Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M2476_30x719_2005.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 11  N_GLOBL: 5  MAX_DIST: 5


. Log(lk) :               * ->   -24975.261464 
. Log(lk) :   -24975.261464 ->   -24798.751949   2 swaps done 
. Log(lk) :   -24798.751949 ->   -24784.169102   0 swap  done
. Log(lk) :   -24784.169102 ->   -24781.799278   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -24559.233012 ->   -24551.663628   0 swap  done
. Log(lk) :   -24551.663628 ->   -24550.291523   0 swap  done
. Log(lk) :   -24550.291523 ->   -24549.625751   0 swap  done
. Log(lk) :   -24549.625751 ->   -24549.238774   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  making move: 25 -> 49 (6.551983)
Log (lk): -24541.583186


. Optimisation of the gamma shape parameter...

. Log(lk) :   -24541.506852 ->   -24539.028112   1 swap  done
. Log(lk) :   -24539.028112 ->   -24538.564650   0 swap  done
. Log(lk) :   -24538.564650 ->   -24538.415876   0 swap  done
. Log(lk) :   -24538.415876 ->   -24538.334228   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -24538.334025 ->   -24538.284254   0 swap  done
. Log(lk) :   -24538.284254 ->   -24538.252929   0 swap  done
. Log(lk) :   -24538.252929 ->   -24538.232866   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  making move: 31 -> 32 (0.870864)
Log (lk): -24535.523638

. Log(lk) :   -24535.523638 ->   -24535.275902   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -24535.266568 ->   -24535.231498   0 swap  done
. Log(lk) :   -24535.231498 ->   -24535.214451   0 swap  done
. Log(lk) :   -24535.214451 ->   -24535.204061   0 swap  done
. Log(lk) :   -24535.204061 ->   -24535.197431   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -24535.197295 ->   -24535.192944   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  making move: 15 -> 28 (4.017511)
Log (lk): -24528.247926

. Log(lk) :   -24528.247926 ->   -24527.104843   1 swap  done
. Log(lk) :   -24527.104843 ->   -24526.537263   0 swap  done
. Log(lk) :   -24526.537263 ->   -24526.450999   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -24526.450999 ->   -24526.417072   0 swap  done
. Log(lk) :   -24526.417072 ->   -24526.398538   0 swap  done
. Log(lk) :   -24526.398538 ->   -24526.387274   0 swap  done
. Log(lk) :   -24526.387274 ->   -24526.380145   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -24526.400875


. Last optimization step...

. Log(lk) :               * ->   -24526.385990 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -24526.385990 ->   -24526.384752 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -24526.384752 ->   -24526.384724 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -24526.384724 ->   -24526.384571 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -24526.384571 ->   -24526.384571 

. Optimisation of the gamma shape parameter...
nr_d_L:  6256
nr_d_lk: 2963
nr_loc:  199
nr_glb:  5


. Time used 0h7m17s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

357.14user 0.00system 7:16.50elapsed 81%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps