Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M2477_39x888_2005.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 15  N_GLOBL: 7  MAX_DIST: 7


. Log(lk) :               * ->   -21760.786527 
. Log(lk) :   -21760.786527 ->   -21562.200335   0 swap  done
. Log(lk) :   -21562.200335 ->   -21544.342930   1 swap  done
. Log(lk) :   -21544.342930 ->   -21539.235430   1 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -21177.323768 ->   -21169.095523   0 swap  done
. Log(lk) :   -21169.095523 ->   -21166.358624   0 swap  done
. Log(lk) :   -21166.358624 ->   -21164.997354   0 swap  done
. Log(lk) :   -21164.997354 ->   -21164.289558   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -21164.276809 ->   -21163.893657   0 swap  done
. Log(lk) :   -21163.893657 ->   -21163.688152   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -21163.453212


. Last optimization step...

. Log(lk) :               * ->   -21163.450472 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -21163.450472 ->   -21163.445470 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -21163.445470 ->   -21163.445433 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -21163.445433 ->   -21163.445433 

. Optimisation of the gamma shape parameter...
nr_d_L:  3040
nr_d_lk: 1333
nr_loc:  100
nr_glb:  7


. Time used 0h3m50s

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221.32user 0.00system 3:50.32elapsed 96%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps