Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M2478_30x276_2005.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 11  N_GLOBL: 5  MAX_DIST: 5


. Log(lk) :               * ->    -8816.766997 
. Log(lk) :    -8816.766997 ->    -8769.097162   4 swaps done 
. Log(lk) :    -8769.097162 ->    -8761.321100   1 swap  done
. Log(lk) :    -8761.321100 ->    -8760.171929   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8732.415062 ->    -8731.489902   0 swap  done
. Log(lk) :    -8731.489902 ->    -8731.232657   1 swap  done
. Log(lk) :    -8731.232657 ->    -8730.284941   1 swap  done
. Log(lk) :    -8730.284941 ->    -8727.777581   1 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8727.766248 ->    -8725.913657   1 swap  done
. Log(lk) :    -8725.913657 ->    -8725.515317   0 swap  done
. Log(lk) :    -8725.515317 ->    -8725.427006   0 swap  done
. Log(lk) :    -8725.427006 ->    -8725.401899   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8725.397835 ->    -8725.386911   0 swap  done
. Log(lk) :    -8725.386911 ->    -8725.381970   0 swap  done
. Log(lk) :    -8725.381970 ->    -8725.379498   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -8725.384412


. Last optimization step...

. Log(lk) :               * ->    -8725.380687 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8725.380687 ->    -8725.379698 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8725.379698 ->    -8725.379698 

. Optimisation of the gamma shape parameter...
nr_d_L:  1400
nr_d_lk: 758
nr_loc:  100
nr_glb:  5


. Time used 0h1m35s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

76.25user 0.00system 1:35.27elapsed 80%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps