Sequence filename : /auto/dufayard/res/parc_wim/proteic_M2479_30x627_2005.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... N_RGRFT: 11 N_GLOBL: 5 MAX_DIST: 5 . Log(lk) : * -> -18317.976032 . Log(lk) : -18317.976032 -> -18213.797610 3 swaps done . Log(lk) : -18213.797610 -> -18205.871128 3 swaps done . Log(lk) : -18205.871128 -> -18203.364734 1 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -18066.225753 -> -18064.240712 1 swap done . Log(lk) : -18064.240712 -> -18063.991136 1 swap done . Log(lk) : -18063.991136 -> -18063.911920 1 swap done . Log(lk) : -18063.911920 -> -18063.908592 1 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -18063.844304 -> -18063.765596 1 swap done . Log(lk) : -18063.765596 -> -18063.781138 1 swap done . Moving backward (topology + branch lengths) . Optimisation of the gamma shape parameter... . Log(lk) : -18063.765596 -> -18063.095666 1 swap done . Log(lk) : -18063.095666 -> -18062.862779 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -18062.862743 -> -18062.843641 0 swap done . Log(lk) : -18062.843641 -> -18062.837312 0 swap done . Log(lk) : -18062.837312 -> -18062.834430 0 swap done . Log(lk) : -18062.834430 -> -18062.832965 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -18062.831706 -> -18062.830385 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods making move: 52 -> 55 (1.211243) Log (lk): -18060.316901 . Log(lk) : -18060.316901 -> -18060.292521 0 swap done . Log(lk) : -18060.292521 -> -18060.290962 0 swap done . Log(lk) : -18060.290962 -> -18060.290728 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization making move: 6 -> 20 (0.000455) Log (lk): -18060.276614 . Optimisation of the gamma shape parameter... . Log(lk) : -18060.275951 -> -18059.991675 0 swap done . Log(lk) : -18059.991675 -> -18059.968714 0 swap done . Log(lk) : -18059.968714 -> -18059.964336 0 swap done . Log(lk) : -18059.964336 -> -18059.963029 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -18059.962768 -> -18059.962054 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods making move: 26 -> 17 (4.017219) Log (lk): -18053.723731 . Log(lk) : -18053.723731 -> -18053.662498 0 swap done . Log(lk) : -18053.662498 -> -18053.655900 0 swap done . Log(lk) : -18053.655900 -> -18053.654639 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -18053.654537 -> -18053.654262 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization Log (lk): -18053.664363 nr_d_L: 7082 nr_d_lk: 2866 nr_loc: 200 nr_glb: 7 . Time used 0h5m31s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 288.65user 0.00system 5:30.75elapsed 87%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps