Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M2480_40x430_2005.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 15  N_GLOBL: 7  MAX_DIST: 7


. Log(lk) :               * ->   -24160.728970 
. Log(lk) :   -24160.728970 ->   -24018.002602   5 swaps done 
. Log(lk) :   -24018.002602 ->   -23989.247155   5 swaps done 
. Log(lk) :   -23989.247155 ->   -23982.146485   1 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23886.113500 ->   -23879.272759   3 swaps done 
. Log(lk) :   -23879.272759 ->   -23875.306708   1 swap  done
. Log(lk) :   -23875.306708 ->   -23874.116579   2 swaps done 
. Log(lk) :   -23874.116579 ->   -23872.246954   1 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23872.085759 ->   -23871.449906   0 swap  done
. Log(lk) :   -23871.449906 ->   -23871.361730   0 swap  done
. Log(lk) :   -23871.361730 ->   -23871.328617   0 swap  done
. Log(lk) :   -23871.328617 ->   -23871.313520   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23871.303588 ->   -23871.292462   0 swap  done
. Log(lk) :   -23871.292462 ->   -23871.286881   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -23871.317349


. Last optimization step...

. Log(lk) :               * ->   -23871.293909 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23871.293909 ->   -23871.291898 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23871.291898 ->   -23871.291788 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23871.291788 ->   -23871.291441 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23871.291441 ->   -23871.291400 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23871.291400 ->   -23871.291400 

. Optimisation of the gamma shape parameter...
nr_d_L:  3952
nr_d_lk: 1323
nr_loc:  100
nr_glb:  7


. Time used 0h2m58s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

170.74user 0.00system 2:58.37elapsed 95%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps