Sequence filename : /auto/dufayard/res/parc_wim/proteic_M2512_14x717_2006.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Large distance encountered between tax2 and tax1 sequences . Large distance encountered between tax3 and tax1 sequences . Large distance encountered between tax4 and tax1 sequences . Large distance encountered between tax5 and tax1 sequences . Large distance encountered between tax6 and tax1 sequences . Large distance encountered between tax7 and tax1 sequences . Large distance encountered between tax8 and tax1 sequences . Large distance encountered between tax9 and tax1 sequences . Large distance encountered between tax10 and tax1 sequences . Large distance encountered between tax11 and tax1 sequences . Large distance encountered between tax12 and tax1 sequences . Large distance encountered between tax13 and tax1 sequences . Large distance encountered between tax14 and tax1 sequences . Large distance encountered between tax3 and tax2 sequences . Large distance encountered between tax4 and tax2 sequences . Large distance encountered between tax5 and tax2 sequences . Large distance encountered between tax6 and tax2 sequences . Large distance encountered between tax7 and tax2 sequences . Large distance encountered between tax8 and tax2 sequences . Large distance encountered between tax9 and tax2 sequences . Large distance encountered between tax10 and tax2 sequences . Large distance encountered between tax11 and tax2 sequences . Large distance encountered between tax12 and tax2 sequences . Large distance encountered between tax13 and tax2 sequences . Large distance encountered between tax14 and tax2 sequences . Large distance encountered between tax6 and tax3 sequences . Large distance encountered between tax7 and tax3 sequences . Large distance encountered between tax8 and tax3 sequences . Large distance encountered between tax9 and tax3 sequences . Large distance encountered between tax10 and tax3 sequences . Large distance encountered between tax11 and tax3 sequences . Large distance encountered between tax12 and tax3 sequences . Large distance encountered between tax14 and tax3 sequences . Large distance encountered between tax6 and tax4 sequences . Large distance encountered between tax7 and tax4 sequences . Large distance encountered between tax8 and tax4 sequences . Large distance encountered between tax9 and tax4 sequences . Large distance encountered between tax10 and tax4 sequences . Large distance encountered between tax12 and tax4 sequences . Large distance encountered between tax14 and tax4 sequences . Large distance encountered between tax6 and tax5 sequences . Large distance encountered between tax7 and tax5 sequences . Large distance encountered between tax8 and tax5 sequences . Large distance encountered between tax9 and tax5 sequences . Large distance encountered between tax10 and tax5 sequences . Large distance encountered between tax12 and tax5 sequences . Large distance encountered between tax14 and tax5 sequences . Large distance encountered between tax7 and tax6 sequences . Large distance encountered between tax8 and tax6 sequences . Large distance encountered between tax9 and tax6 sequences . Large distance encountered between tax10 and tax6 sequences . Large distance encountered between tax11 and tax6 sequences . Large distance encountered between tax12 and tax6 sequences . Large distance encountered between tax13 and tax6 sequences . Large distance encountered between tax14 and tax6 sequences . Large distance encountered between tax8 and tax7 sequences . Large distance encountered between tax9 and tax7 sequences . Large distance encountered between tax10 and tax7 sequences . Large distance encountered between tax11 and tax7 sequences . Large distance encountered between tax12 and tax7 sequences . Large distance encountered between tax13 and tax7 sequences . Large distance encountered between tax14 and tax7 sequences . Large distance encountered between tax9 and tax8 sequences . Large distance encountered between tax10 and tax8 sequences . Large distance encountered between tax11 and tax8 sequences . Large distance encountered between tax13 and tax8 sequences . Large distance encountered between tax14 and tax8 sequences . Large distance encountered between tax10 and tax9 sequences . Large distance encountered between tax11 and tax9 sequences . Large distance encountered between tax12 and tax9 sequences . Large distance encountered between tax13 and tax9 sequences . Large distance encountered between tax14 and tax9 sequences . Large distance encountered between tax11 and tax10 sequences . Large distance encountered between tax12 and tax10 sequences . Large distance encountered between tax13 and tax10 sequences . Large distance encountered between tax14 and tax10 sequences . Large distance encountered between tax12 and tax11 sequences . Large distance encountered between tax14 and tax11 sequences . Large distance encountered between tax13 and tax12 sequences . Large distance encountered between tax14 and tax12 sequences . Large distance encountered between tax14 and tax13 sequences . Building BIONJ tree... N_RGRFT: 5 N_GLOBL: 2 MAX_DIST: 2 . Large distance encountered between tax2 and tax1 sequences . Large distance encountered between tax3 and tax1 sequences . Large distance encountered between tax4 and tax1 sequences . Large distance encountered between tax5 and tax1 sequences . Large distance encountered between tax6 and tax1 sequences . Large distance encountered between tax7 and tax1 sequences . Large distance encountered between tax8 and tax1 sequences . Large distance encountered between tax9 and tax1 sequences . Large distance encountered between tax10 and tax1 sequences . Large distance encountered between tax11 and tax1 sequences . Large distance encountered between tax12 and tax1 sequences . Large distance encountered between tax13 and tax1 sequences . Large distance encountered between tax14 and tax1 sequences . Large distance encountered between tax3 and tax2 sequences . Large distance encountered between tax4 and tax2 sequences . Large distance encountered between tax5 and tax2 sequences . Large distance encountered between tax6 and tax2 sequences . Large distance encountered between tax7 and tax2 sequences . Large distance encountered between tax8 and tax2 sequences . Large distance encountered between tax9 and tax2 sequences . Large distance encountered between tax10 and tax2 sequences . Large distance encountered between tax11 and tax2 sequences . Large distance encountered between tax12 and tax2 sequences . Large distance encountered between tax13 and tax2 sequences . Large distance encountered between tax14 and tax2 sequences . Large distance encountered between tax6 and tax3 sequences . Large distance encountered between tax7 and tax3 sequences . Large distance encountered between tax8 and tax3 sequences . Large distance encountered between tax9 and tax3 sequences . Large distance encountered between tax10 and tax3 sequences . Large distance encountered between tax11 and tax3 sequences . Large distance encountered between tax12 and tax3 sequences . Large distance encountered between tax14 and tax3 sequences . Large distance encountered between tax6 and tax4 sequences . Large distance encountered between tax7 and tax4 sequences . Large distance encountered between tax8 and tax4 sequences . Large distance encountered between tax9 and tax4 sequences . Large distance encountered between tax10 and tax4 sequences . Large distance encountered between tax12 and tax4 sequences . Large distance encountered between tax14 and tax4 sequences . Large distance encountered between tax6 and tax5 sequences . Large distance encountered between tax7 and tax5 sequences . Large distance encountered between tax8 and tax5 sequences . Large distance encountered between tax9 and tax5 sequences . Large distance encountered between tax10 and tax5 sequences . Large distance encountered between tax12 and tax5 sequences . Large distance encountered between tax14 and tax5 sequences . Large distance encountered between tax7 and tax6 sequences . Large distance encountered between tax8 and tax6 sequences . Large distance encountered between tax9 and tax6 sequences . Large distance encountered between tax10 and tax6 sequences . Large distance encountered between tax11 and tax6 sequences . Large distance encountered between tax12 and tax6 sequences . Large distance encountered between tax13 and tax6 sequences . Large distance encountered between tax14 and tax6 sequences . Large distance encountered between tax8 and tax7 sequences . Large distance encountered between tax9 and tax7 sequences . Large distance encountered between tax10 and tax7 sequences . Large distance encountered between tax11 and tax7 sequences . Large distance encountered between tax12 and tax7 sequences . Large distance encountered between tax13 and tax7 sequences . Large distance encountered between tax14 and tax7 sequences . Large distance encountered between tax9 and tax8 sequences . Large distance encountered between tax10 and tax8 sequences . Large distance encountered between tax11 and tax8 sequences . Large distance encountered between tax13 and tax8 sequences . Large distance encountered between tax14 and tax8 sequences . Large distance encountered between tax10 and tax9 sequences . Large distance encountered between tax11 and tax9 sequences . Large distance encountered between tax12 and tax9 sequences . Large distance encountered between tax13 and tax9 sequences . Large distance encountered between tax14 and tax9 sequences . Large distance encountered between tax11 and tax10 sequences . Large distance encountered between tax12 and tax10 sequences . Large distance encountered between tax13 and tax10 sequences . Large distance encountered between tax14 and tax10 sequences . Large distance encountered between tax12 and tax11 sequences . Large distance encountered between tax14 and tax11 sequences . Large distance encountered between tax13 and tax12 sequences . Large distance encountered between tax14 and tax12 sequences . Large distance encountered between tax14 and tax13 sequences . Log(lk) : * -> -21137.239741 . Log(lk) : -21137.239741 -> -20486.337053 3 swaps done . Log(lk) : -20486.337053 -> -20389.930505 2 swaps done . Log(lk) : -20389.930505 -> -20357.029750 1 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -20354.879075 -> -20298.558097 1 swap done . Log(lk) : -20298.558097 -> -20214.355203 2 swaps done . Log(lk) : -20214.355203 -> -20117.795834 1 swap done . Log(lk) : -20117.795834 -> -20114.163116 1 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -20108.899132 -> -20109.242854 1 swap done . Moving backward (topology + branch lengths) . Optimisation of the gamma shape parameter... . Log(lk) : -20108.899132 -> -20103.802034 1 swap done . Log(lk) : -20103.802034 -> -20102.458369 0 swap done . Log(lk) : -20102.458369 -> -20101.972140 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -20101.745571 -> -20101.289216 0 swap done . Log(lk) : -20101.289216 -> -20101.053302 0 swap done . Log(lk) : -20101.053302 -> -20100.906152 0 swap done . Log(lk) : -20100.906152 -> -20100.801710 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization making move: 14 -> 13 (0.123342) Log (lk): -20100.496112 . Optimisation of the gamma shape parameter... . Log(lk) : -20100.347551 -> -20100.138037 0 swap done . Log(lk) : -20100.138037 -> -20100.073564 0 swap done . Log(lk) : -20100.073564 -> -20100.037176 0 swap done . Log(lk) : -20100.037176 -> -20100.010229 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -20099.972928 -> -20099.934083 0 swap done . Log(lk) : -20099.934083 -> -20099.910329 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations making move: 12 -> 16 (0.124099) Log (lk): -20100.112791 . Moving backward (topology + branch lengths) . Err: mov_back failed Command exited with non-zero status 1 111.18user 0.00system 2:15.39elapsed 82%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps