Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M2558_27x1060_2005.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Large distance encountered between tax12 and tax1 sequences

. Large distance encountered between tax21 and tax1 sequences

. Large distance encountered between tax19 and tax4 sequences

. Large distance encountered between tax21 and tax12 sequences

. Large distance encountered between tax21 and tax19 sequences

. Large distance encountered between tax27 and tax19 sequences

. Building BIONJ tree...

N_RGRFT: 10  N_GLOBL: 5  MAX_DIST: 5


. Large distance encountered between tax12 and tax1 sequences

. Large distance encountered between tax21 and tax1 sequences

. Large distance encountered between tax19 and tax4 sequences

. Large distance encountered between tax21 and tax12 sequences

. Large distance encountered between tax21 and tax19 sequences

. Large distance encountered between tax27 and tax19 sequences

. Log(lk) :               * ->   -37707.908269 
. Log(lk) :   -37707.908269 ->   -37595.938512   6 swaps done 
. Log(lk) :   -37595.938512 ->   -37559.893783   3 swaps done 
. Log(lk) :   -37559.893783 ->   -37551.129219   1 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -37279.319766 ->   -37252.887602   1 swap  done
. Log(lk) :   -37252.887602 ->   -37243.951129   1 swap  done
. Log(lk) :   -37243.951129 ->   -37236.801619   1 swap  done
. Log(lk) :   -37236.801619 ->   -37234.258109   1 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -37230.913883 ->   -37225.889428   1 swap  done
. Log(lk) :   -37225.889428 ->   -37224.575813   1 swap  done
. Log(lk) :   -37224.575813 ->   -37222.534572   1 swap  done
. Log(lk) :   -37222.534572 ->   -37223.456577   1 swap  done

. Moving backward (topology + branch lengths) 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -37222.534572 ->   -37213.619803   1 swap  done
. Log(lk) :   -37213.619803 ->   -37209.569422   1 swap  done
. Log(lk) :   -37209.569422 ->   -37202.886797   1 swap  done
. Log(lk) :   -37202.886797 ->   -37197.332557   1 swap  done
. Log(lk) :   -37197.332557 ->   -37197.690969   1 swap  done

. Moving backward (topology + branch lengths) 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -37197.332557 ->   -37195.008474   1 swap  done
. Log(lk) :   -37195.008474 ->   -37193.315141   0 swap  done
. Log(lk) :   -37193.315141 ->   -37192.637354   0 swap  done
. Log(lk) :   -37192.637354 ->   -37192.339479   0 swap  done
. Log(lk) :   -37192.339479 ->   -37192.206351   0 swap  done
. Log(lk) :   -37192.206351 ->   -37192.146049   0 swap  done
. Log(lk) :   -37192.146049 ->   -37192.118348   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  making move: 40 -> 42 (0.093394)
Log (lk): -37191.247971

. Log(lk) :   -37191.247971 ->   -37191.045936   0 swap  done
. Log(lk) :   -37191.045936 ->   -37190.967324   0 swap  done
. Log(lk) :   -37190.967324 ->   -37190.926939   0 swap  done
. Log(lk) :   -37190.926939 ->   -37190.904485   0 swap  done
. Log(lk) :   -37190.904485 ->   -37190.891757   0 swap  done
. Log(lk) :   -37190.891757 ->   -37190.884448   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  making move: 13 -> 19 (0.947788)
Log (lk): -37189.276679

. Log(lk) :   -37189.276679 ->   -37189.195593   0 swap  done
. Log(lk) :   -37189.195593 ->   -37189.177627   0 swap  done
. Log(lk) :   -37189.177627 ->   -37189.169214   0 swap  done
. Log(lk) :   -37189.169214 ->   -37189.163891   0 swap  done
. Log(lk) :   -37189.163891 ->   -37189.159882   0 swap  done
. Log(lk) :   -37189.159882 ->   -37189.156625   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
  making move: 13 -> 22 (0.509663)
Log (lk): -37188.633950

. Log(lk) :   -37188.633950 ->   -37188.571525   0 swap  done
. Log(lk) :   -37188.571525 ->   -37188.563800   0 swap  done
. Log(lk) :   -37188.563800 ->   -37188.561265   0 swap  done
. Log(lk) :   -37188.561265 ->   -37188.560051   0 swap  done
. Log(lk) :   -37188.560051 ->   -37188.559357   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -37188.609548
nr_d_L:  4870
nr_d_lk: 2449
nr_loc:  201
nr_glb:  8


. Time used 0h8m40s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

433.59user 0.00system 8:39.78elapsed 83%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps