Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M2636_20x1275_2006.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 7  N_GLOBL: 3  MAX_DIST: 3


. Log(lk) :               * ->   -19612.131389 
. Log(lk) :   -19612.131389 ->   -19471.639695   1 swap  done
. Log(lk) :   -19471.639695 ->   -19449.143994   1 swap  done
. Log(lk) :   -19449.143994 ->   -19434.423829   1 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -19087.487080 ->   -19079.145556   0 swap  done
. Log(lk) :   -19079.145556 ->   -19075.492636   1 swap  done
. Log(lk) :   -19075.492636 ->   -19072.236755   0 swap  done
. Log(lk) :   -19072.236755 ->   -19071.303694   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -19071.303677 ->   -19070.842196   0 swap  done
. Log(lk) :   -19070.842196 ->   -19070.592114   0 swap  done
. Log(lk) :   -19070.592114 ->   -19070.452381   0 swap  done
. Log(lk) :   -19070.452381 ->   -19070.373127   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  making move: 25 -> 29 (1.400166)
Log (lk): -19067.276537


. Optimisation of the gamma shape parameter...

. Log(lk) :   -19067.258629 ->   -19066.936102   0 swap  done
. Log(lk) :   -19066.936102 ->   -19066.857362   0 swap  done
. Log(lk) :   -19066.857362 ->   -19066.817779   0 swap  done
. Log(lk) :   -19066.817779 ->   -19066.796127   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -19066.794405 ->   -19066.781757   0 swap  done
. Log(lk) :   -19066.781757 ->   -19066.774685   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -19066.780898


. Last optimization step...

. Log(lk) :               * ->   -19066.775261 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -19066.775261 ->   -19066.775207 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -19066.775207 ->   -19066.775207 

. Optimisation of the gamma shape parameter...
nr_d_L:  1032
nr_d_lk: 607
nr_loc:  101
nr_glb:  3


. Time used 0h3m1s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

155.78user 0.00system 3:01.20elapsed 85%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps