Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M2638_18x378_2006.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 6  N_GLOBL: 3  MAX_DIST: 3


. Log(lk) :               * ->    -1708.332051 
. Log(lk) :    -1708.332051 ->    -1705.992895   1 swap  done
. Log(lk) :    -1705.992895 ->    -1704.150045   1 swap  done
. Log(lk) :    -1704.150045 ->    -1703.980897   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -1694.031489 ->    -1693.978592   0 swap  done
. Log(lk) :    -1693.978592 ->    -1693.968451   0 swap  done
. Log(lk) :    -1693.968451 ->    -1693.965984   0 swap  done
. Log(lk) :    -1693.965984 ->    -1693.965333   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  making move: 16 -> 18 (0.560801)
Log (lk): -1692.167062


. Optimisation of the gamma shape parameter...

. Log(lk) :    -1692.165219 ->    -1691.938894   0 swap  done
. Log(lk) :    -1691.938894 ->    -1691.865408   0 swap  done
. Log(lk) :    -1691.865408 ->    -1691.847352   0 swap  done
. Log(lk) :    -1691.847352 ->    -1691.843381   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -1691.841241 ->    -1691.840223   0 swap  done
. Log(lk) :    -1691.840223 ->    -1691.840036   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -1691.840033


. Last optimization step...

. Log(lk) :               * ->    -1691.840033 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -1691.840033 ->    -1691.840031 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -1691.840031 ->    -1691.840031 

. Optimisation of the gamma shape parameter...
nr_d_L:  890
nr_d_lk: 465
nr_loc:  100
nr_glb:  3


. Time used 0h0m16s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

16.06user 0.00system 0:16.17elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps