Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M2639_19x331_2006.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 7  N_GLOBL: 3  MAX_DIST: 3


. Log(lk) :               * ->    -5859.753826 
. Log(lk) :    -5859.753826 ->    -5830.123718   3 swaps done 
. Log(lk) :    -5830.123718 ->    -5822.790005   1 swap  done
. Log(lk) :    -5822.790005 ->    -5821.714876   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5744.605439 ->    -5743.725437   0 swap  done
. Log(lk) :    -5743.725437 ->    -5743.576055   0 swap  done
. Log(lk) :    -5743.576055 ->    -5743.517320   0 swap  done
. Log(lk) :    -5743.517320 ->    -5743.491010   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5743.432303 ->    -5743.402015   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -5743.403170


. Last optimization step...

. Log(lk) :               * ->    -5743.378839 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5743.378839 ->    -5743.368643 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5743.368643 ->    -5743.367222 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5743.367222 ->    -5743.366933 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5743.366933 ->    -5743.366651 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5743.366651 ->    -5743.366651 

. Optimisation of the gamma shape parameter...
nr_d_L:  464
nr_d_lk: 285
nr_loc:  100
nr_glb:  3


. Time used 0h0m41s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

34.57user 0.00system 0:41.25elapsed 83%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps