Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M2641_18x326_2006.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 6  N_GLOBL: 3  MAX_DIST: 3


. Log(lk) :               * ->    -5223.825268 
. Log(lk) :    -5223.825268 ->    -5200.514448   1 swap  done
. Log(lk) :    -5200.514448 ->    -5197.997080   0 swap  done
. Log(lk) :    -5197.997080 ->    -5197.439720   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5155.265109 ->    -5154.104812   1 swap  done
. Log(lk) :    -5154.104812 ->    -5153.751382   0 swap  done
. Log(lk) :    -5153.751382 ->    -5153.659231   0 swap  done
. Log(lk) :    -5153.659231 ->    -5153.620564   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5153.612883 ->    -5153.596106   0 swap  done
. Log(lk) :    -5153.596106 ->    -5153.587774   0 swap  done
. Log(lk) :    -5153.587774 ->    -5153.583530   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -5153.585500


. Last optimization step...

. Log(lk) :               * ->    -5153.584679 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5153.584679 ->    -5153.584289 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5153.584289 ->    -5153.584260 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5153.584260 ->    -5153.584260 

. Optimisation of the gamma shape parameter...
nr_d_L:  464
nr_d_lk: 228
nr_loc:  100
nr_glb:  3


. Time used 0h0m34s

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33.78user 0.00system 0:34.50elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps