Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M2899_25x444_2006.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 9  N_GLOBL: 4  MAX_DIST: 4


. Log(lk) :               * ->   -10160.271264 
. Log(lk) :   -10160.271264 ->   -10095.125075   4 swaps done 
. Log(lk) :   -10095.125075 ->   -10089.811806   2 swaps done 
. Log(lk) :   -10089.811806 ->   -10080.590233   3 swaps done 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9970.536081 ->    -9965.315581   2 swaps done 
. Log(lk) :    -9965.315581 ->    -9964.409591   1 swap  done
. Log(lk) :    -9964.409591 ->    -9964.832415   1 swap  done

. Moving backward (topology + branch lengths) 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9964.409591 ->    -9962.809386   1 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9962.809386 ->    -9961.263786   1 swap  done
. Log(lk) :    -9961.263786 ->    -9960.851409   0 swap  done
. Log(lk) :    -9960.851409 ->    -9960.715935   0 swap  done
. Log(lk) :    -9960.715935 ->    -9960.646708   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9960.646706 ->    -9960.608240   0 swap  done
. Log(lk) :    -9960.608240 ->    -9960.585904   0 swap  done
. Log(lk) :    -9960.585904 ->    -9960.572545   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -9960.581447


. Last optimization step...

. Log(lk) :               * ->    -9960.566492 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9960.566492 ->    -9960.562152 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9960.562152 ->    -9960.556584 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9960.556584 ->    -9960.555732 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9960.555732 ->    -9960.555729 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9960.555729 ->    -9960.555729 

. Optimisation of the gamma shape parameter...
nr_d_L:  920
nr_d_lk: 504
nr_loc:  100
nr_glb:  4


. Time used 0h1m35s

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88.29user 0.00system 1:35.54elapsed 92%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps