Sequence filename : /auto/dufayard/res/parc_wim/proteic_M2954_5x1006_2006.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... N_RGRFT: 1 N_GLOBL: 0 MAX_DIST: 0 . Log(lk) : * -> -3247.074542 . Log(lk) : -3247.074542 -> -3242.281212 0 swap done . Log(lk) : -3242.281212 -> -3241.822647 0 swap done . Log(lk) : -3241.822647 -> -3241.780253 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -3241.743743 -> -3241.740472 0 swap done . Log(lk) : -3241.740472 -> -3241.740156 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization Log (lk): -3241.740155 nr_d_L: 16 nr_d_lk: 7 nr_loc: 7 nr_glb: 0 . Time used 0h0m1s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 0.85user 0.00system 0:00.89elapsed 94%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps