.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : nucleic_M2587_117x1910_2006.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : yes . Number of random starting trees : 5 . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 1192 patterns found. (out of a total of 1910 sites) . 932 sites without polymorphism (48.80%). . [Random start 1/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . This analysis requires at least 74Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 12 sec) [ -30402.4334] [GTR parameters ] . ( 13 sec) [ -29936.2337] [Alpha ][ 0.500960] . ( 13 sec) [ -29695.6907] [ 4684] [depth= 11] . ( 14 sec) [ -29506.3921] [ 4645] [depth= 18] . ( 14 sec) [ -29477.8733] [ 4638] [depth= 8] . ( 14 sec) [ -29471.0337] [ 4638] [depth= 1] . ( 15 sec) [ -29272.3983] [ 4621] [depth= 14] . ( 15 sec) [ -29256.3497] [ 4620] [depth= 2] . ( 16 sec) [ -29174.3600] [ 4604] [depth= 10] . ( 16 sec) [ -29087.2477] [ 4586] [depth= 3] . ( 16 sec) [ -29066.5736] [ 4584] [depth= 3] . ( 17 sec) [ -29002.4847] [ 4577] [depth= 8] . ( 17 sec) [ -28961.6547] [ 4575] [depth= 6] . ( 17 sec) [ -28937.8189] [ 4555] [depth= 3] . ( 18 sec) [ -28897.7045] [ 4554] [depth= 2] . ( 18 sec) [ -28838.7793] [ 4542] [depth= 22] . ( 18 sec) [ -28809.8830] [ 4539] [depth= 5] . ( 19 sec) [ -28775.9814] [ 4541] [depth= 1] . ( 19 sec) [ -28527.0484] [ 4530] [depth= 5] . ( 19 sec) [ -28218.1087] [ 4528] [depth= 20] . ( 19 sec) [ -28155.7699] [ 4521] [depth= 13] . ( 20 sec) [ -28010.4926] [ 4480] [depth= 6] . ( 20 sec) [ -27987.1425] [ 4476] [depth= 11] . ( 20 sec) [ -27901.3002] [ 4448] [depth= 2] . ( 21 sec) [ -27893.0238] [ 4447] [depth= 21] . ( 21 sec) [ -27684.2444] [ 4418] [depth= 27] . ( 22 sec) [ -27524.8759] [ 4388] [depth= 28] . ( 22 sec) [ -27492.5768] [ 4380] [depth= 23] . ( 23 sec) [ -27411.5380] [ 4361] [depth= 13] . ( 23 sec) [ -27360.8604] [ 4350] [depth= 6] . ( 23 sec) [ -27317.6454] [ 4351] [depth= 19] . ( 24 sec) [ -27296.3465] [ 4347] [depth= 14] . ( 24 sec) [ -27180.8525] [ 4323] [depth= 19] . ( 24 sec) [ -27046.2056] [ 4298] [depth= 11] . ( 25 sec) [ -26993.6528] [ 4290] [depth= 7] . ( 25 sec) [ -26887.8835] [ 4272] [depth= 9] . ( 25 sec) [ -26683.5282] [ 4218] [depth= 9] . ( 26 sec) [ -26652.9283] [ 4218] [depth= 1] . ( 26 sec) [ -26492.2631] [ 4218] [depth= 1] . ( 26 sec) [ -26394.0755] [ 4215] [depth= 2] . ( 27 sec) [ -26339.2965] [ 4198] [depth= 20] . ( 27 sec) [ -26191.3409] [ 4155] [depth= 14] . ( 28 sec) [ -26118.7457] [ 4149] [depth= 19] . ( 28 sec) [ -26070.9103] [ 4138] [depth= 1] . ( 28 sec) [ -25929.9315] [ 4096] [depth= 8] . ( 29 sec) [ -25828.8178] [ 4096] [depth= 1] . ( 29 sec) [ -25797.1257] [ 4088] [depth= 2] . ( 30 sec) [ -25795.0566] [ 4083] [depth= 1] . ( 30 sec) [ -25764.0160] [ 4074] [depth= 26] . ( 30 sec) [ -25622.0482] [ 4038] [depth= 14] . ( 31 sec) [ -25591.7424] [ 4034] [depth= 12] . ( 31 sec) [ -25550.4080] [ 4031] [depth= 3] . ( 32 sec) [ -25438.5531] [ 4024] [depth= 5] . ( 32 sec) [ -25398.1412] [ 4015] [depth= 16] . ( 33 sec) [ -25397.2437] [ 4005] [depth= 19] . ( 33 sec) [ -25385.9654] [ 4004] [depth= 3] . ( 33 sec) [ -25384.0207] [ 4004] [depth= 21] . ( 34 sec) [ -25369.1720] [ 4002] [depth= 6] . ( 34 sec) [ -25327.0411] [ 3982] [depth= 8] . ( 34 sec) [ -25289.9379] [ 3981] [depth= 7] . ( 35 sec) [ -25277.5361] [ 3970] [depth= 5] . ( 35 sec) [ -25270.9244] [ 3968] [depth= 3] . ( 35 sec) [ -25236.1499] [ 3962] [depth= 13] . ( 36 sec) [ -25213.4365] [ 3960] [depth= 5] . ( 36 sec) [ -25189.3853] [ 3950] [depth= 15] . ( 38 sec) [ -25139.3702] [ 3932] [depth= 16] . ( 38 sec) [ -25106.3267] [ 3924] [depth= 12] . ( 39 sec) [ -25081.0644] [ 3899] [depth= 13] . ( 39 sec) [ -25062.8999] [ 3893] [depth= 1] . ( 39 sec) [ -24947.4253] [ 3892] [depth= 3] . ( 40 sec) [ -24901.6750] [ 3888] [depth= 12] . ( 40 sec) [ -24805.3750] [ 3857] [depth= 13] . ( 40 sec) [ -24706.3384] [ 3856] [depth= 6] . ( 41 sec) [ -24674.7849] [ 3854] [depth= 3] . ( 41 sec) [ -24663.8757] [ 3856] [depth= 10] . ( 42 sec) [ -24600.6796] [ 3850] [depth= 2] . ( 42 sec) [ -24587.9465] [ 3849] [depth= 2] . ( 42 sec) [ -24558.9318] [ 3843] [depth= 1] . ( 42 sec) [ -24558.3456] [ 3844] [depth= 1] . ( 43 sec) [ -24487.6994] [ 3826] [depth= 7] . ( 43 sec) [ -24485.2904] [ 3830] [depth= 5] . ( 43 sec) [ -24325.2317] [ 3830] [depth= 12] . ( 44 sec) [ -24325.1724] [ 3834] [depth= 15] . ( 44 sec) [ -24201.6212] [ 3813] [depth= 19] . ( 44 sec) [ -24149.2026] [ 3800] [depth= 5] . ( 45 sec) [ -24102.0423] [ 3798] [depth= 14] . ( 45 sec) [ -24082.5897] [ 3793] [depth= 3] . ( 45 sec) [ -24079.0868] [ 3793] [depth= 1] . ( 46 sec) [ -24071.8118] [ 3793] [depth= 2] . ( 46 sec) [ -24070.9846] [ 3793] [depth= 1] . ( 47 sec) [ -24070.9280] [ 3794] [depth= 1] . ( 47 sec) [ -23997.7490] [ 3785] [depth= 8] . ( 47 sec) [ -23947.5692] [ 3778] [depth= 8] . ( 48 sec) [ -23942.4238] [ 3777] [depth= 1] . ( 48 sec) [ -23915.6816] [ 3775] [depth= 8] . ( 48 sec) [ -23756.9908] [ 3736] [depth= 10] . ( 50 sec) [ -23740.7649] [ 3726] [depth= 1] . ( 51 sec) [ -23707.8282] [ 3710] [depth= 10] . ( 51 sec) [ -23571.7113] [ 3698] [depth= 15] . ( 51 sec) [ -23470.5872] [ 3671] [depth= 15] . ( 52 sec) [ -23324.5871] [ 3643] [depth= 19] . ( 52 sec) [ -23228.0020] [ 3607] [depth= 3] . ( 53 sec) [ -23195.6254] [ 3610] [depth= 1] . ( 53 sec) [ -23138.8358] [ 3595] [depth= 3] . ( 54 sec) [ -23082.0170] [ 3577] [depth= 10] . ( 54 sec) [ -23011.1645] [ 3574] [depth= 3] . ( 54 sec) [ -22959.6135] [ 3576] [depth= 1] . ( 55 sec) [ -22933.5458] [ 3565] [depth= 14] . ( 55 sec) [ -22901.5086] [ 3559] [depth= 7] . ( 55 sec) [ -22857.6121] [ 3552] [depth= 12] . ( 56 sec) [ -22854.4648] [ 3555] [depth= 1] . ( 56 sec) [ -22830.3765] [ 3556] [depth= 10] . ( 56 sec) [ -22823.0163] [ 3556] [depth= 2] . ( 57 sec) [ -22757.8884] [ 3544] [depth= 17] . ( 57 sec) [ -22681.4735] [ 3522] [depth= 9] . ( 58 sec) [ -22644.3299] [ 3517] [depth= 12] . ( 58 sec) [ -22486.1542] [ 3498] [depth= 11] . ( 58 sec) [ -22445.7277] [ 3488] [depth= 8] . ( 59 sec) [ -22354.0828] [ 3471] [depth= 10] . ( 59 sec) [ -22264.2408] [ 3447] [depth= 5] . ( 59 sec) [ -22258.6159] [ 3447] [depth= 1] . ( 60 sec) [ -22126.8876] [ 3432] [depth= 9] . ( 60 sec) [ -22080.2823] [ 3432] [depth= 1] . ( 61 sec) [ -22064.5013] [ 3428] [depth= 2] . ( 61 sec) [ -22052.1065] [ 3425] [depth= 1] . ( 62 sec) [ -22050.9331] [ 3428] [depth= 1] . ( 62 sec) [ -22006.0729] [ 3424] [depth= 5] . ( 63 sec) [ -21441.6140] [ 3374] [depth= 16] . ( 63 sec) [ -21415.5990] [ 3379] [depth= 14] . ( 64 sec) [ -21340.9645] [ 3371] [depth= 9] . ( 64 sec) [ -21330.8085] [ 3374] [depth= 16] . ( 65 sec) [ -21250.2628] [ 3379] [depth= 13] . ( 66 sec) [ -21223.3196] [ 3374] [depth= 1] . ( 67 sec) [ -21127.9406] [ 3365] [depth= 6] . ( 67 sec) [ -21091.6405] [ 3348] [depth= 5] . ( 67 sec) [ -21053.9988] [ 3341] [depth= 14] . ( 69 sec) [ -21042.8857] [ 3341] [depth= 1] . ( 69 sec) [ -21018.1753] [ 3335] [depth= 3] . ( 69 sec) [ -21014.6137] [ 3335] [depth= 2] . ( 70 sec) [ -21011.9111] [ 3334] [depth= 3] . ( 70 sec) [ -20959.4287] [ 3323] [depth= 5] . ( 71 sec) [ -20957.6371] [ 3324] [depth= 1] . ( 71 sec) [ -20946.8308] [ 3323] [depth= 3] . ( 72 sec) [ -20906.8324] [ 3314] [depth= 4] . ( 72 sec) [ -20900.1912] [ 3314] [depth= 1] . ( 73 sec) [ -20851.7024] [ 3301] [depth= 1] . ( 74 sec) [ -20839.3488] [ 3299] [depth= 3] . ( 74 sec) [ -20808.8225] [ 3292] [depth= 5] . ( 74 sec) [ -20794.6795] [ 3292] [depth= 1] . ( 75 sec) [ -20734.4296] [ 3276] [depth= 2] . ( 75 sec) [ -20534.0886] [ 3257] [depth= 10] . ( 76 sec) [ -20414.5850] [ 3224] [depth= 18] . ( 76 sec) [ -20411.0815] [ 3221] [depth= 3] . ( 77 sec) [ -20380.3603] [ 3220] [depth= 4] . ( 77 sec) [ -20378.8226] [ 3217] [depth= 1] . ( 78 sec) [ -20318.6814] [ 3202] [depth= 1] . ( 78 sec) [ -20313.3333] [ 3200] [depth= 2] . ( 78 sec) [ -20248.2097] [ 3194] [depth= 4] . ( 80 sec) [ -20237.0989] [ 3196] [depth= 1] . ( 80 sec) [ -20221.9009] [ 3192] [depth= 2] . ( 80 sec) [ -20149.2705] [ 3174] [depth= 16] . ( 81 sec) [ -20094.4512] [ 3151] [depth= 2] . ( 81 sec) [ -20087.6994] [ 3150] [depth= 1] . ( 82 sec) [ -20086.6236] [ 3150] [depth= 2] . ( 82 sec) [ -20081.5665] [ 3154] [depth= 13] . ( 83 sec) [ -20079.0245] [ 3157] [depth= 10] . ( 83 sec) [ -19966.9696] [ 3126] [depth= 5] . ( 83 sec) [ -19958.7704] [ 3126] [depth= 1] . ( 84 sec) [ -19958.6964] [ 3125] [depth= 1] . ( 84 sec) [ -19948.3070] [ 3109] [depth= 3] . ( 86 sec) [ -19916.7093] [ 3104] [depth= 8] . ( 86 sec) [ -19908.4278] [ 3121] [depth= 4] . ( 87 sec) [ -19898.0728] [ 3112] [depth= 3] . ( 87 sec) [ -19872.3174] [ 3102] [depth= 2] . ( 87 sec) [ -19854.2742] [ 3099] [depth= 3] . ( 88 sec) [ -19828.4266] [ 3099] [depth= 1] . ( 88 sec) [ -19824.2548] [ 3099] [depth= 4] . ( 88 sec) [ -19792.6089] [ 3086] [depth= 1] . ( 88 sec) [ -19776.7601] [ 3083] [depth= 1] . ( 89 sec) [ -19769.4067] [ 3080] [depth= 2] . ( 89 sec) [ -19767.9492] [ 3080] [depth= 1] . ( 89 sec) [ -19762.4606] [ 3079] [depth= 4] . ( 90 sec) [ -19732.6005] [ 3075] [depth= 2] . ( 90 sec) [ -19701.7983] [ 3076] [depth= 2] . ( 90 sec) [ -19546.5536] [ 3075] [depth= 1] . ( 90 sec) [ -19543.9988] [ 3074] [depth= 1] . ( 91 sec) [ -19257.6353] [ 3057] [depth= 4] . ( 91 sec) [ -19218.8383] [ 3051] [depth= 4] . ( 92 sec) [ -19128.1870] [ 3031] [depth= 13] . ( 92 sec) [ -19083.6317] [ 3027] [depth= 1] . ( 93 sec) [ -19073.4518] [ 3026] [depth= 6] . ( 93 sec) [ -19057.1760] [ 3025] [depth= 5] . ( 93 sec) [ -19018.4718] [ 3016] [depth= 1] . ( 94 sec) [ -19005.9008] [ 3015] [depth= 1] . ( 95 sec) [ -18912.9111] [ 2999] [depth= 10] . ( 96 sec) [ -18891.1587] [ 2999] [depth= 2] . ( 96 sec) [ -18885.4180] [ 2998] [depth= 2] . ( 96 sec) [ -18883.2175] [ 2996] [depth= 4] . ( 97 sec) [ -18881.3951] [ 2996] [depth= 1] . ( 97 sec) [ -18866.4341] [ 2976] [depth= 7] . ( 98 sec) [ -18788.3564] [ 2961] [depth= 9] . ( 99 sec) [ -18779.7201] [ 2959] [depth= 3] . ( 99 sec) [ -18732.3016] [ 2949] [depth= 18] . ( 100 sec) [ -18731.3595] [ 2950] [depth= 1] . ( 100 sec) [ -18718.0889] [ 2948] [depth= 13] . ( 101 sec) [ -18595.1428] [ 2918] [depth= 16] . ( 101 sec) [ -18582.0475] [ 2913] [depth= 10] . ( 101 sec) [ -18581.7575] [ 2912] [depth= 6] . ( 102 sec) [ -18580.3101] [ 2914] [depth= 5] . ( 102 sec) [ -18565.4786] [ 2913] [depth= 2] . ( 103 sec) [ -18564.9321] [ 2915] [depth= 3] . ( 103 sec) [ -18563.2842] [ 2916] [depth= 1] . ( 104 sec) [ -18528.0434] [ 2910] [depth= 18] . ( 105 sec) [ -18527.9936] [ 2910] [depth= 1] . ( 105 sec) [ -18526.2487] [ 2910] [depth= 3] . ( 105 sec) [ -18519.1590] [ 2895] [depth= 3] . ( 106 sec) [ -18514.2638] [ 2894] [depth= 12] . ( 106 sec) [ -18448.3528] [ 2882] [depth= 1] . ( 107 sec) [ -18447.1650] [ 2883] [depth= 2] . ( 107 sec) [ -18419.8085] [ 2879] [depth= 4] . ( 108 sec) [ -18397.9083] [ 2870] [depth= 2] . ( 108 sec) [ -18368.1083] [ 2876] [depth= 1] . ( 111 sec) [ -18367.5935] [ 2875] [depth= 4] . ( 111 sec) [ -18366.8248] [ 2876] [depth= 2] . ( 111 sec) [ -18363.8934] [ 2875] [depth= 1] . ( 112 sec) [ -18360.3409] [ 2875] [depth= 3] . ( 112 sec) [ -18340.2918] [ 2871] [depth= 3] . ( 112 sec) [ -18286.4499] [ 2853] [depth= 2] . ( 113 sec) [ -18286.0591] [ 2853] [depth= 5] . ( 114 sec) [ -18270.2157] [ 2850] [depth= 8] . ( 114 sec) [ -18207.4908] [ 2841] [depth= 11] . ( 115 sec) [ -18022.0559] [ 2803] [depth= 12] . ( 115 sec) [ -18016.5268] [ 2799] [depth= 2] . ( 116 sec) [ -18015.1686] [ 2800] [depth= 1] . ( 116 sec) [ -18012.5425] [ 2802] [depth= 3] . ( 117 sec) [ -17967.7460] [ 2790] [depth= 3] . ( 117 sec) [ -17942.6326] [ 2788] [depth= 2] . ( 118 sec) [ -17939.5455] [ 2789] [depth= 1] . ( 120 sec) [ -17910.5689] [ 2780] [depth= 3] . ( 120 sec) [ -17794.6672] [ 2763] [depth= 3] . ( 120 sec) [ -17782.8719] [ 2759] [depth= 1] . ( 121 sec) [ -17761.7144] [ 2753] [depth= 15] . ( 122 sec) [ -17743.8680] [ 2752] [depth= 1] . ( 122 sec) [ -17737.7601] [ 2754] [depth= 3] . ( 122 sec) [ -17664.7412] [ 2739] [depth= 10] . ( 123 sec) [ -17632.1504] [ 2730] [depth= 6] . ( 123 sec) [ -17620.9425] [ 2724] [depth= 1] . ( 123 sec) [ -17619.5180] [ 2723] [depth= 3] . ( 124 sec) [ -17604.6285] [ 2720] [depth= 17] . ( 124 sec) [ -17598.6140] [ 2720] [depth= 1] . ( 125 sec) [ -17596.6106] [ 2720] [depth= 1] . ( 126 sec) [ -17571.7787] [ 2723] [depth= 3] . ( 126 sec) [ -17571.5334] [ 2724] [depth= 1] . ( 126 sec) [ -17567.1851] [ 2724] [depth= 7] . ( 128 sec) [ -17533.9712] [ 2716] [depth= 1] . ( 129 sec) [ -17530.6436] [ 2713] [depth= 3] . ( 130 sec) [ -17528.6473] [ 2712] [depth= 1] . ( 130 sec) [ -17455.2068] [ 2682] [depth= 4] . ( 133 sec) [ -17183.0862] [Branch lengths ] . ( 138 sec) [ -17169.6357] [GTR parameters ] . ( 138 sec) [ -17168.9449] [Alpha ][ 0.473737] . ( 140 sec) [ -17166.7913] [ 2679] [depth= 1] . ( 140 sec) [ -17166.1683] [ 2677] [depth= 1] . ( 140 sec) [ -17141.1700] [ 2667] [depth= 1] . ( 141 sec) [ -17116.8094] [ 2640] [depth= 17] . ( 141 sec) [ -17116.6204] [ 2643] [depth= 1] . ( 142 sec) [ -17114.3788] [ 2643] [depth= 1] . ( 143 sec) [ -17091.4215] [ 2642] [depth= 13] . ( 144 sec) [ -17088.3696] [ 2642] [depth= 1] . ( 144 sec) [ -17088.3258] [ 2642] [depth= 2] . ( 145 sec) [ -17086.2545] [ 2641] [depth= 1] . ( 145 sec) [ -17012.8158] [ 2612] [depth= 13] . ( 147 sec) [ -17012.6816] [ 2612] [depth= 3] . ( 148 sec) [ -16981.7383] [ 2608] [depth= 15] . ( 149 sec) [ -16980.5899] [ 2606] [depth= 11] . ( 150 sec) [ -16976.3446] [ 2605] [depth= 2] . ( 150 sec) [ -16974.7496] [ 2605] [depth= 1] . ( 151 sec) [ -16971.5476] [ 2602] [depth= 1] . ( 152 sec) [ -16933.4449] [ 2604] [depth= 4] . ( 152 sec) [ -16923.9254] [ 2600] [depth= 2] . ( 156 sec) [ -16923.8184] [ 2599] [depth= 1] . ( 156 sec) [ -16922.1659] [ 2597] [depth= 2] . ( 156 sec) [ -16921.0813] [ 2599] [depth= 1] . ( 157 sec) [ -16903.3642] [ 2588] [depth= 1] . ( 157 sec) [ -16898.5964] [ 2585] [depth= 1] . ( 158 sec) [ -16875.5794] [ 2581] [depth= 5] . ( 159 sec) [ -16870.2117] [ 2581] [depth= 18] . ( 161 sec) [ -16854.3446] [ 2571] [depth= 1] . ( 161 sec) [ -16851.9117] [ 2573] [depth= 10] . ( 162 sec) [ -16822.8662] [ 2572] [depth= 1] . ( 163 sec) [ -16822.1049] [ 2575] [depth= 6] . ( 164 sec) [ -16820.8064] [ 2575] [depth= 5] . ( 168 sec) [ -16815.6058] [ 2574] [depth= 5] . ( 170 sec) [ -16814.4570] [ 2575] [depth= 1] . ( 170 sec) [ -16751.1322] [ 2558] [depth= 5] . ( 171 sec) [ -16751.0371] [ 2558] [depth= 2] . ( 172 sec) [ -16748.1732] [ 2558] [depth= 1] . ( 172 sec) [ -16747.0276] [ 2558] [depth= 3] . ( 173 sec) [ -16743.8539] [ 2557] [depth= 2] . ( 174 sec) [ -16727.1057] [ 2554] [depth= 1] . ( 175 sec) [ -16711.2555] [ 2549] [depth= 1] . ( 175 sec) [ -16695.8292] [ 2547] [depth= 1] . ( 176 sec) [ -16693.8247] [ 2547] [depth= 1] . ( 177 sec) [ -16693.6846] [ 2547] [depth= 1] . ( 178 sec) [ -16693.0579] [ 2545] [depth= 1] . ( 179 sec) [ -16692.0420] [ 2546] [depth= 1] . ( 179 sec) [ -16685.5697] [ 2544] [depth= 5] . ( 180 sec) [ -16681.8009] [ 2542] [depth= 5] . ( 181 sec) [ -16681.5224] [ 2543] [depth= 1] . ( 181 sec) [ -16680.3825] [ 2543] [depth= 1] . ( 185 sec) [ -16652.6196] [ 2531] [depth= 2] . ( 185 sec) [ -16652.0105] [ 2531] [depth= 2] . ( 186 sec) [ -16605.2688] [ 2527] [depth= 15] . ( 187 sec) [ -16604.3673] [ 2526] [depth= 2] . ( 187 sec) [ -16575.6593] [ 2517] [depth= 1] . ( 188 sec) [ -16574.5332] [ 2517] [depth= 3] . ( 188 sec) [ -16574.1264] [ 2517] [depth= 1] . ( 189 sec) [ -16558.6770] [ 2514] [depth= 3] . ( 193 sec) [ -16557.6596] [ 2511] [depth= 1] . ( 195 sec) [ -16557.1597] [ 2511] [depth= 1] . ( 197 sec) [ -16507.2292] [ 2497] [depth= 11] . ( 200 sec) [ -16505.9576] [ 2496] [depth= 2] . ( 200 sec) [ -16505.8907] [ 2496] [depth= 2] . ( 200 sec) [ -16504.7550] [ 2496] [depth= 1] . ( 201 sec) [ -16503.7275] [ 2496] [depth= 1] . ( 202 sec) [ -16502.2121] [ 2495] [depth= 1] . ( 206 sec) [ -16491.5110] [ 2514] [depth= 21] . ( 207 sec) [ -16490.5387] [ 2514] [depth= 3] . ( 208 sec) [ -16490.4458] [ 2517] [depth= 3] . ( 209 sec) [ -16490.1404] [ 2517] [depth= 2] . ( 210 sec) [ -16489.1492] [ 2517] [depth= 2] . ( 211 sec) [ -16406.9704] [ 2490] [depth= 16] . ( 211 sec) [ -16406.9578] [ 2490] [depth= 2] . ( 212 sec) [ -16405.2082] [ 2488] [depth= 5] . ( 216 sec) [ -16404.8510] [ 2488] [depth= 2] . ( 216 sec) [ -16404.7538] [ 2488] [depth= 1] . ( 217 sec) [ -16403.3853] [ 2488] [depth= 1] . ( 217 sec) [ -16391.3462] [ 2484] [depth= 6] . ( 218 sec) [ -16367.7105] [ 2476] [depth= 6] . ( 218 sec) [ -16366.8897] [ 2477] [depth= 1] . ( 219 sec) [ -16366.4299] [ 2477] [depth= 1] . ( 224 sec) [ -16366.2446] [ 2477] [depth= 1] . ( 225 sec) [ -16365.3909] [ 2476] [depth= 1] . ( 225 sec) [ -16283.2499] [ 2431] [depth= 19] . ( 230 sec) [ -16282.2879] [ 2431] [depth= 1] . ( 231 sec) [ -16266.4693] [ 2428] [depth= 7] . ( 232 sec) [ -16266.3820] [ 2429] [depth= 2] . ( 235 sec) [ -16265.4925] [ 2428] [depth= 2] . ( 236 sec) [ -16263.9213] [ 2430] [depth= 1] . ( 237 sec) [ -16263.8973] [ 2430] [depth= 1] . ( 237 sec) [ -16262.7332] [ 2429] [depth= 1] . ( 238 sec) [ -16261.1295] [ 2427] [depth= 4] . ( 238 sec) [ -16260.1077] [ 2426] [depth= 4] . ( 242 sec) [ -16259.8649] [ 2427] [depth= 5] . ( 246 sec) [ -16257.9389] [ 2427] [depth= 3] . ( 247 sec) [ -16257.8347] [ 2427] [depth= 3] . ( 248 sec) [ -16257.6312] [ 2428] [depth= 1] . ( 249 sec) [ -16257.0783] [ 2429] [depth= 1] . ( 250 sec) [ -16255.9065] [ 2428] [depth= 1] . ( 250 sec) [ -16254.7314] [ 2432] [depth= 1] . ( 250 sec) [ -16214.7829] [ 2420] [depth= 1] . ( 251 sec) [ -16213.3343] [ 2419] [depth= 2] . ( 251 sec) [ -16213.2611] [ 2419] [depth= 1] . ( 257 sec) [ -16212.8173] [ 2423] [depth= 3] . ( 257 sec) [ -16205.0271] [ 2422] [depth= 1] . ( 258 sec) [ -16204.7209] [ 2422] [depth= 3] . ( 261 sec) [ -16202.2353] [ 2422] [depth= 2] . ( 268 sec) [ -16201.8521] [ 2423] [depth= 1] . ( 272 sec) [ -16201.1735] [ 2423] [depth= 1] . ( 272 sec) [ -16199.7610] [ 2423] [depth= 4] . ( 273 sec) [ -16199.3189] [ 2423] [depth= 1] . ( 274 sec) [ -16197.6845] [ 2423] [depth= 1] . ( 274 sec) [ -16197.5165] [ 2423] [depth= 1] . ( 278 sec) [ -16194.8956] [ 2423] [depth= 1] . ( 278 sec) [ -16191.7461] [ 2423] [depth= 1] . ( 281 sec) [ -16191.4842] [ 2423] [depth= 10] . ( 285 sec) [ -16081.6052] [Branch lengths ] . ( 288 sec) [ -16080.9926] [GTR parameters ] . ( 289 sec) [ -16079.2726] [Alpha ][ 0.433914] . ( 293 sec) [ -16079.2427] [ 2425] [depth= 1] . ( 295 sec) [ -16078.7232] [ 2424] [depth= 3] . ( 295 sec) [ -16075.1505] [ 2421] [depth= 2] . ( 299 sec) [ -16069.6386] [ 2419] [depth= 1] . ( 300 sec) [ -16066.3406] [ 2419] [depth= 1] . ( 306 sec) [ -16065.8667] [ 2419] [depth= 1] . ( 307 sec) [ -16065.7593] [ 2419] [depth= 1] . ( 308 sec) [ -16065.0812] [ 2419] [depth= 2] . ( 310 sec) [ -16064.9999] [ 2419] [depth= 1] . ( 314 sec) [ -16060.2741] [ 2420] [depth= 7] . ( 314 sec) [ -16059.3741] [ 2419] [depth= 1] . ( 324 sec) [ -16056.0750] [ 2418] [depth= 1] . ( 327 sec) [ -16055.1267] [ 2418] [depth= 1] . ( 330 sec) [ -16052.9349] [ 2418] [depth= 3] . ( 332 sec) [ -16052.9154] [ 2417] [depth= 1] . ( 334 sec) [ -16052.4353] [ 2417] [depth= 1] . ( 342 sec) [ -16050.9600] [ 2414] [depth= 1] . ( 345 sec) [ -16050.6542] [ 2414] [depth= 1] . ( 345 sec) [ -16049.8272] [ 2414] [depth= 1] . ( 346 sec) [ -16049.6262] [ 2414] [depth= 1] . ( 358 sec) [ -16049.2373] [ 2414] [depth= 1] . ( 368 sec) [ -16049.2266] [ 2414] [depth= 1] . ( 373 sec) [ -16049.0477] [ 2414] [depth= 2] . ( 374 sec) [ -16049.0272] [ 2414] [depth= 2] . ( 377 sec) [ -16049.0061] [ 2414] [depth= 3] . ( 378 sec) [ -16048.6623] [ 2414] [depth= 2] . ( 379 sec) [ -16048.5837] [ 2414] [depth= 2] . ( 382 sec) [ -16044.7280] [ 2411] [depth= 3] . ( 385 sec) [ -16044.6933] [ 2411] [depth= 2] . ( 389 sec) [ -16044.6718] [ 2411] [depth= 1] . ( 392 sec) [ -16044.6080] [ 2411] [depth= 2] . ( 395 sec) [ -16043.0774] [ 2411] [depth= 1] . ( 397 sec) [ -16043.0651] [ 2411] [depth= 1] . ( 409 sec) [ -16042.6558] [ 2411] [depth= 3] . ( 414 sec) [ -16042.0699] [ 2411] [depth= 1] . ( 416 sec) [ -16041.9856] [ 2411] [depth= 1] . ( 418 sec) [ -16041.9530] [ 2411] [depth= 2] . ( 436 sec) [ -16041.5263] [ 2410] [depth= 2] . ( 438 sec) [ -16041.2293] [ 2410] [depth= 3] . ( 441 sec) [ -16039.8906] [ 2410] [depth= 1] . ( 444 sec) [ -16039.7834] [ 2410] [depth= 1] . ( 456 sec) [ -16012.9457] [Branch lengths ] . ( 460 sec) [ -16012.7321] [GTR parameters ] . ( 461 sec) [ -16011.2201] [Alpha ][ 0.400862] . ( 476 sec) [ -16010.2280] [ 2414] [depth= 3] . ( 492 sec) [ -16010.0551] [ 2414] [depth= 1] . ( 492 sec) [ -16009.9628] [ 2412] [depth= 2] . ( 500 sec) [ -16009.8751] [ 2412] [depth= 1] . ( 506 sec) [ -16009.8114] [ 2412] [depth= 2] . ( 508 sec) [ -16009.6860] [ 2413] [depth= 1] . ( 509 sec) [ -16009.6435] [ 2413] [depth= 1] . ( 510 sec) [ -16008.0271] [ 2410] [depth= 3] . ( 514 sec) [ -16006.8300] [ 2410] [depth= 1] . ( 554 sec) [ -16006.7873] [ 2410] [depth= 1] . ( 558 sec) [ -16006.7600] [ 2410] [depth= 1] . ( 568 sec) [ -16006.5526] [ 2410] [depth= 2] . ( 573 sec) [ -16006.3770] [ 2409] [depth= 1] . ( 576 sec) [ -16006.3231] [ 2409] [depth= 1] . ( 587 sec) [ -16006.2429] [ 2409] [depth= 2] . ( 594 sec) [ -16005.4797] [ 2409] [depth= 6] . ( 595 sec) [ -16005.4495] [ 2409] [depth= 1] . ( 622 sec) [ -16005.0360] [ 2411] [depth= 4] . ( 627 sec) [ -16005.0142] [ 2411] [depth= 1] . ( 634 sec) [ -16000.1966] [ 2411] [depth= 1] . ( 634 sec) [ -15999.2954] [ 2407] [depth= 5] . ( 648 sec) [ -15984.0109] [Branch lengths ] . ( 650 sec) [ -15983.9242] [GTR parameters ] . ( 651 sec) [ -15983.3689] [Alpha ][ 0.382499] . ( 664 sec) [ -15981.4847] [ 2407] [depth= 1] . ( 671 sec) [ -15981.4356] [ 2407] [depth= 1] . ( 680 sec) [ -15981.3917] [ 2407] [depth= 1] . ( 698 sec) [ -15981.2673] [ 2407] [depth= 1] . ( 705 sec) [ -15981.1496] [ 2407] [depth= 1] . ( 770 sec) [ -15981.1161] [ 2407] [depth= 2] . ( 780 sec) [ -15981.1047] [ 2407] [depth= 2] . ( 788 sec) [ -15981.0290] [ 2407] [depth= 1] . ( 795 sec) [ -15980.8285] [ 2407] [depth= 1] . ( 837 sec) [ -15980.7057] [ 2408] [depth= 6] . ( 840 sec) [ -15976.4623] [Branch lengths ] . ( 844 sec) [ -15976.4422] [GTR parameters ] . ( 844 sec) [ -15976.0947] [Alpha ][ 0.368828] . ( 970 sec) [ -15976.0656] [ 2408] [depth= 2] . ( 997 sec) [ -15975.9290] [ 2408] [depth= 1] . ( 998 sec) [ -15975.8888] [ 2408] [depth= 1] . ( 1044 sec) [ -15973.9965] [Branch lengths ] . ( 1046 sec) [ -15973.9922] [GTR parameters ] . ( 1047 sec) [ -15973.8289] [Alpha ][ 0.359948] . ( 1083 sec) [ -15973.5799] [ 2408] [depth= 1] . ( 1179 sec) [ -15973.5558] [ 2408] [depth= 2] . ( 1209 sec) [ -15973.5330] [ 2408] [depth= 3] . ( 1258 sec) [ -15972.5081] [Branch lengths ] . ( 1260 sec) [ -15972.5058] [GTR parameters ] . ( 1261 sec) [ -15972.4305] [Alpha ][ 0.353840] . ( 1476 sec) [ -15971.8657] [Branch lengths ] . ( 1489 sec) [ -15971.7676] [ 2406] [depth= 1] . ( 1543 sec) [ -15971.3973] [ 2406] [depth= 3] . ( 1558 sec) [ -15971.2280] [ 2406] [depth= 1] . ( 1623 sec) [ -15971.0226] [ 2405] [depth= 1] . ( 1714 sec) [ -15971.0120] [ 2405] [depth= 1] . ( 1789 sec) [ -15970.9268] [ 2405] [depth= 1] . ( 1807 sec) [ -15970.5749] [Branch lengths ] . ( 1810 sec) [ -15970.5714] [GTR parameters ] . ( 1810 sec) [ -15970.4770] [Alpha ][ 0.347176] . ( 2139 sec) [ -15970.4398] [ 2404] [depth= 7] . ( 2145 sec) [ -15970.1401] [Branch lengths ] . ( 2147 sec) [ -15970.1374] [GTR parameters ] . ( 2147 sec) [ -15970.1317] [Alpha ][ 0.345554] . ( 2148 sec) [ -15970.1317] [Topology ] . ( 2154 sec) [ -15970.0269] [Topology ] . ( 2161 sec) [ -15969.9656] [Topology ] . ( 2167 sec) [ -15969.9222] [Topology ] . ( 2174 sec) [ -15969.8910] [Topology ] . ( 2180 sec) [ -15969.8683] [Topology ] . ( 2187 sec) [ -15969.8516] [Topology ] . ( 2188 sec) [ -15969.8512] [GTR parameters ] . ( 2188 sec) [ -15969.8266] [Alpha ][ 0.342255] . ( 2189 sec) [ -15969.8266] [Topology ] . ( 2195 sec) [ -15969.8034] [Topology ] . ( 2202 sec) [ -15969.7869] [Topology ] . ( 2208 sec) [ -15969.7750] [Topology ] . ( 2215 sec) [ -15969.7662] [Topology ] . ( 2221 sec) [ -15969.7598] [Topology ] . ( 2228 sec) [ -15969.7550] [Topology ] . ( 2229 sec) [ -15969.7545] [GTR parameters ] . ( 2229 sec) [ -15969.7474] [Alpha ][ 0.340490] . ( 2230 sec) [ -15969.7474] [Topology ] . ( 2236 sec) [ -15969.7408] [Topology ] . ( 2243 sec) [ -15969.7360] [Topology ] . ( 2249 sec) [ -15969.7325] [Topology ] . ( 2256 sec) [ -15969.7300] [Topology ] . ( 2262 sec) [ -15969.7281] [Topology ] . ( 2269 sec) [ -15969.7267] [Topology ] . ( 2270 sec) [ -15969.7265] [GTR parameters ] . ( 2271 sec) [ -15969.7246] [Alpha ][ 0.339575] . ( 2271 sec) [ -15969.7246] [Topology ] . ( 2277 sec) [ -15969.7227] [Topology ] . ( 2284 sec) [ -15969.7213] [Topology ] . ( 2290 sec) [ -15969.7202] [Topology ] . ( 2297 sec) [ -15969.7195] [Topology ] . ( 2298 sec) [ -15969.7194] [GTR parameters ] . ( 2299 sec) [ -15969.7190] [Alpha ][ 0.339186] . ( 2299 sec) [ -15969.7190] [Topology ] . ( 2305 sec) [ -15969.7182] [Topology ] . ( 2306 sec) [ -15969.7182] [GTR parameters ] . ( 2307 sec) [ -15969.7182] [Alpha ][ 0.339186] . Checking for NNIs, optimizing five branches... . ( 2352 sec) [ -15969.4123] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -15969.412325. . [Random start 2/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 11 sec) [ -29958.6430] [GTR parameters ] . ( 12 sec) [ -29472.8802] [Alpha ][ 0.500960] . ( 12 sec) [ -29416.3303] [ 4727] [depth= 8] . ( 13 sec) [ -29199.3393] [ 4702] [depth= 11] . ( 13 sec) [ -29166.1507] [ 4700] [depth= 3] . ( 13 sec) [ -29059.2600] [ 4693] [depth= 5] . ( 14 sec) [ -28936.0599] [ 4668] [depth= 5] . ( 14 sec) [ -28916.3817] [ 4660] [depth= 7] . ( 15 sec) [ -28885.0478] [ 4644] [depth= 2] . ( 15 sec) [ -28797.9716] [ 4638] [depth= 4] . ( 15 sec) [ -28784.0776] [ 4638] [depth= 2] . ( 16 sec) [ -28728.9837] [ 4619] [depth= 9] . ( 16 sec) [ -28713.9799] [ 4612] [depth= 4] . ( 16 sec) [ -28630.2816] [ 4610] [depth= 4] . ( 17 sec) [ -28349.0256] [ 4567] [depth= 11] . ( 17 sec) [ -28266.8737] [ 4566] [depth= 1] . ( 17 sec) [ -28200.7923] [ 4556] [depth= 7] . ( 17 sec) [ -28082.5925] [ 4553] [depth= 6] . ( 18 sec) [ -28015.1217] [ 4531] [depth= 9] . ( 18 sec) [ -27975.6249] [ 4528] [depth= 8] . ( 18 sec) [ -27930.0211] [ 4515] [depth= 10] . ( 19 sec) [ -27849.6010] [ 4515] [depth= 1] . ( 19 sec) [ -27819.8060] [ 4512] [depth= 30] . ( 20 sec) [ -27766.5657] [ 4508] [depth= 17] . ( 20 sec) [ -27750.2317] [ 4508] [depth= 1] . ( 20 sec) [ -27684.8036] [ 4490] [depth= 12] . ( 21 sec) [ -27680.4988] [ 4484] [depth= 20] . ( 21 sec) [ -27575.7242] [ 4448] [depth= 10] . ( 21 sec) [ -27508.0516] [ 4430] [depth= 19] . ( 22 sec) [ -27312.2657] [ 4413] [depth= 27] . ( 22 sec) [ -27287.0943] [ 4395] [depth= 21] . ( 22 sec) [ -27282.6293] [ 4394] [depth= 1] . ( 22 sec) [ -27267.5764] [ 4395] [depth= 2] . ( 23 sec) [ -27223.5513] [ 4394] [depth= 2] . ( 23 sec) [ -27016.5634] [ 4349] [depth= 6] . ( 23 sec) [ -26946.8101] [ 4347] [depth= 6] . ( 24 sec) [ -26874.4569] [ 4342] [depth= 2] . ( 24 sec) [ -26860.1296] [ 4338] [depth= 6] . ( 24 sec) [ -26796.9588] [ 4327] [depth= 14] . ( 25 sec) [ -26639.6657] [ 4327] [depth= 3] . ( 25 sec) [ -26625.2486] [ 4323] [depth= 1] . ( 25 sec) [ -26501.1781] [ 4315] [depth= 3] . ( 26 sec) [ -26470.1787] [ 4306] [depth= 17] . ( 26 sec) [ -26467.8228] [ 4302] [depth= 1] . ( 26 sec) [ -26401.2772] [ 4296] [depth= 8] . ( 27 sec) [ -26300.9735] [ 4277] [depth= 17] . ( 27 sec) [ -26285.7665] [ 4273] [depth= 1] . ( 27 sec) [ -26274.4304] [ 4265] [depth= 13] . ( 28 sec) [ -26149.7083] [ 4248] [depth= 11] . ( 28 sec) [ -26026.7728] [ 4218] [depth= 12] . ( 28 sec) [ -25906.5579] [ 4208] [depth= 11] . ( 29 sec) [ -25868.2619] [ 4209] [depth= 1] . ( 29 sec) [ -25776.5018] [ 4194] [depth= 8] . ( 30 sec) [ -25575.1241] [ 4154] [depth= 12] . ( 30 sec) [ -25527.6333] [ 4143] [depth= 17] . ( 30 sec) [ -25464.6397] [ 4133] [depth= 12] . ( 31 sec) [ -25460.5599] [ 4133] [depth= 1] . ( 31 sec) [ -25343.4868] [ 4110] [depth= 9] . ( 31 sec) [ -25266.3307] [ 4095] [depth= 13] . ( 32 sec) [ -25201.1066] [ 4085] [depth= 13] . ( 32 sec) [ -25125.4423] [ 4058] [depth= 17] . ( 33 sec) [ -24962.4013] [ 4005] [depth= 9] . ( 33 sec) [ -24882.9250] [ 3989] [depth= 7] . ( 33 sec) [ -24660.6385] [ 3959] [depth= 16] . ( 34 sec) [ -24373.1045] [ 3932] [depth= 11] . ( 34 sec) [ -24299.2850] [ 3898] [depth= 11] . ( 34 sec) [ -24237.6908] [ 3880] [depth= 19] . ( 35 sec) [ -24230.8096] [ 3877] [depth= 3] . ( 35 sec) [ -24142.1228] [ 3874] [depth= 3] . ( 35 sec) [ -24083.9833] [ 3873] [depth= 4] . ( 36 sec) [ -24078.8026] [ 3872] [depth= 2] . ( 36 sec) [ -24068.1471] [ 3862] [depth= 11] . ( 36 sec) [ -24002.3871] [ 3862] [depth= 2] . ( 37 sec) [ -23979.2588] [ 3858] [depth= 4] . ( 37 sec) [ -23934.3979] [ 3845] [depth= 3] . ( 37 sec) [ -23712.8741] [ 3802] [depth= 13] . ( 38 sec) [ -23697.0330] [ 3793] [depth= 16] . ( 38 sec) [ -23547.4379] [ 3798] [depth= 14] . ( 38 sec) [ -23539.4641] [ 3798] [depth= 4] . ( 39 sec) [ -23534.5255] [ 3798] [depth= 1] . ( 39 sec) [ -23522.5008] [ 3797] [depth= 14] . ( 40 sec) [ -23509.0848] [ 3795] [depth= 17] . ( 40 sec) [ -23471.1650] [ 3791] [depth= 13] . ( 40 sec) [ -23416.9294] [ 3776] [depth= 2] . ( 41 sec) [ -23348.2809] [ 3771] [depth= 7] . ( 42 sec) [ -23295.2609] [ 3765] [depth= 10] . ( 42 sec) [ -23274.6845] [ 3771] [depth= 9] . ( 43 sec) [ -23178.7171] [ 3741] [depth= 15] . ( 43 sec) [ -23177.1511] [ 3740] [depth= 18] . ( 43 sec) [ -23176.7376] [ 3740] [depth= 1] . ( 44 sec) [ -23155.5649] [ 3739] [depth= 17] . ( 44 sec) [ -23153.8763] [ 3739] [depth= 21] . ( 44 sec) [ -23017.6818] [ 3704] [depth= 6] . ( 45 sec) [ -22914.2573] [ 3668] [depth= 1] . ( 45 sec) [ -22895.1659] [ 3669] [depth= 1] . ( 46 sec) [ -22566.2240] [ 3652] [depth= 1] . ( 46 sec) [ -22445.0357] [ 3633] [depth= 8] . ( 46 sec) [ -22336.3331] [ 3588] [depth= 12] . ( 47 sec) [ -22320.0403] [ 3595] [depth= 1] . ( 47 sec) [ -22288.3488] [ 3582] [depth= 16] . ( 47 sec) [ -22157.9213] [ 3569] [depth= 19] . ( 48 sec) [ -22155.3016] [ 3566] [depth= 4] . ( 49 sec) [ -22094.1680] [ 3568] [depth= 1] . ( 49 sec) [ -22047.8069] [ 3561] [depth= 16] . ( 49 sec) [ -21960.2703] [ 3523] [depth= 10] . ( 50 sec) [ -21931.5320] [ 3521] [depth= 9] . ( 51 sec) [ -21831.1082] [ 3495] [depth= 15] . ( 51 sec) [ -21775.2755] [ 3486] [depth= 1] . ( 52 sec) [ -21770.9478] [ 3488] [depth= 1] . ( 52 sec) [ -21769.7512] [ 3486] [depth= 2] . ( 52 sec) [ -21745.7568] [ 3480] [depth= 6] . ( 53 sec) [ -21740.1776] [ 3475] [depth= 3] . ( 53 sec) [ -21736.6575] [ 3477] [depth= 1] . ( 53 sec) [ -21735.0757] [ 3472] [depth= 8] . ( 53 sec) [ -21725.2613] [ 3472] [depth= 1] . ( 54 sec) [ -21636.0021] [ 3437] [depth= 15] . ( 54 sec) [ -21617.6351] [ 3432] [depth= 1] . ( 54 sec) [ -21539.6055] [ 3420] [depth= 13] . ( 55 sec) [ -21441.9933] [ 3420] [depth= 6] . ( 55 sec) [ -21382.6174] [ 3410] [depth= 17] . ( 56 sec) [ -21358.1685] [ 3411] [depth= 5] . ( 56 sec) [ -21310.5790] [ 3404] [depth= 17] . ( 57 sec) [ -21261.6718] [ 3394] [depth= 6] . ( 57 sec) [ -21204.9600] [ 3378] [depth= 10] . ( 58 sec) [ -21203.1113] [ 3380] [depth= 5] . ( 58 sec) [ -21179.1119] [ 3373] [depth= 1] . ( 58 sec) [ -21091.3773] [ 3366] [depth= 6] . ( 59 sec) [ -21069.8438] [ 3366] [depth= 1] . ( 59 sec) [ -20977.3621] [ 3344] [depth= 14] . ( 59 sec) [ -20939.8491] [ 3343] [depth= 1] . ( 60 sec) [ -20839.5359] [ 3346] [depth= 17] . ( 60 sec) [ -20822.6102] [ 3343] [depth= 2] . ( 60 sec) [ -20802.3085] [ 3341] [depth= 4] . ( 61 sec) [ -20793.3696] [ 3339] [depth= 9] . ( 61 sec) [ -20792.8085] [ 3339] [depth= 1] . ( 62 sec) [ -20791.6387] [ 3339] [depth= 1] . ( 62 sec) [ -20780.6974] [ 3338] [depth= 6] . ( 62 sec) [ -20774.6094] [ 3335] [depth= 3] . ( 62 sec) [ -20767.8106] [ 3334] [depth= 2] . ( 63 sec) [ -20721.4169] [ 3319] [depth= 3] . ( 63 sec) [ -20613.5230] [ 3309] [depth= 9] . ( 64 sec) [ -20588.5847] [ 3307] [depth= 9] . ( 64 sec) [ -20582.8152] [ 3306] [depth= 5] . ( 64 sec) [ -20534.2100] [ 3299] [depth= 9] . ( 64 sec) [ -20530.5441] [ 3297] [depth= 1] . ( 65 sec) [ -20524.8411] [ 3297] [depth= 2] . ( 65 sec) [ -20481.4897] [ 3290] [depth= 12] . ( 65 sec) [ -20455.9653] [ 3287] [depth= 5] . ( 66 sec) [ -20420.8459] [ 3275] [depth= 10] . ( 66 sec) [ -20405.1237] [ 3269] [depth= 1] . ( 66 sec) [ -20361.2358] [ 3262] [depth= 3] . ( 67 sec) [ -20322.3136] [ 3255] [depth= 21] . ( 67 sec) [ -20314.9572] [ 3249] [depth= 11] . ( 68 sec) [ -20277.9417] [ 3236] [depth= 6] . ( 68 sec) [ -20273.3218] [ 3236] [depth= 2] . ( 69 sec) [ -20261.7836] [ 3236] [depth= 2] . ( 69 sec) [ -20258.8771] [ 3239] [depth= 8] . ( 70 sec) [ -20250.1003] [ 3236] [depth= 1] . ( 70 sec) [ -20211.8423] [ 3232] [depth= 12] . ( 70 sec) [ -20211.1556] [ 3232] [depth= 1] . ( 71 sec) [ -20142.3236] [ 3212] [depth= 11] . ( 71 sec) [ -20107.7766] [ 3203] [depth= 16] . ( 71 sec) [ -20068.1620] [ 3194] [depth= 1] . ( 73 sec) [ -20026.6892] [ 3182] [depth= 14] . ( 73 sec) [ -20009.2090] [ 3177] [depth= 5] . ( 74 sec) [ -19980.8726] [ 3173] [depth= 16] . ( 74 sec) [ -19977.1782] [ 3172] [depth= 5] . ( 74 sec) [ -19976.3123] [ 3171] [depth= 10] . ( 75 sec) [ -19974.1564] [ 3170] [depth= 8] . ( 75 sec) [ -19868.9876] [ 3150] [depth= 5] . ( 76 sec) [ -19862.8520] [ 3149] [depth= 11] . ( 77 sec) [ -19851.0124] [ 3147] [depth= 3] . ( 77 sec) [ -19835.5787] [ 3147] [depth= 9] . ( 78 sec) [ -19809.0970] [ 3143] [depth= 25] . ( 79 sec) [ -19800.9642] [ 3142] [depth= 1] . ( 79 sec) [ -19720.9627] [ 3114] [depth= 7] . ( 79 sec) [ -19684.0066] [ 3113] [depth= 2] . ( 80 sec) [ -19667.7644] [ 3104] [depth= 3] . ( 80 sec) [ -19666.8590] [ 3104] [depth= 2] . ( 80 sec) [ -19652.9327] [ 3094] [depth= 10] . ( 81 sec) [ -19651.7699] [ 3095] [depth= 1] . ( 81 sec) [ -19647.0006] [ 3094] [depth= 10] . ( 82 sec) [ -19635.3481] [ 3096] [depth= 2] . ( 82 sec) [ -19605.9568] [ 3092] [depth= 8] . ( 82 sec) [ -19598.5308] [ 3095] [depth= 13] . ( 83 sec) [ -19587.5686] [ 3093] [depth= 8] . ( 83 sec) [ -19570.5944] [ 3089] [depth= 12] . ( 85 sec) [ -19567.2309] [ 3090] [depth= 1] . ( 85 sec) [ -19560.4152] [ 3089] [depth= 1] . ( 85 sec) [ -19501.0005] [ 3065] [depth= 5] . ( 86 sec) [ -19479.1306] [ 3063] [depth= 1] . ( 86 sec) [ -19477.5909] [ 3061] [depth= 1] . ( 86 sec) [ -19450.6962] [ 3050] [depth= 7] . ( 86 sec) [ -19411.4991] [ 3048] [depth= 5] . ( 87 sec) [ -19368.4031] [ 3045] [depth= 9] . ( 87 sec) [ -19366.3685] [ 3045] [depth= 2] . ( 88 sec) [ -19357.3666] [ 3043] [depth= 11] . ( 89 sec) [ -19351.5022] [ 3043] [depth= 1] . ( 89 sec) [ -19261.3989] [ 3020] [depth= 10] . ( 90 sec) [ -19253.1260] [ 3019] [depth= 1] . ( 90 sec) [ -19248.6306] [ 3019] [depth= 1] . ( 90 sec) [ -19248.3552] [ 3016] [depth= 6] . ( 90 sec) [ -19214.1501] [ 3007] [depth= 1] . ( 91 sec) [ -19211.8182] [ 3007] [depth= 1] . ( 91 sec) [ -19177.2949] [ 2988] [depth= 6] . ( 91 sec) [ -19159.6866] [ 2988] [depth= 2] . ( 92 sec) [ -19140.2696] [ 2986] [depth= 12] . ( 92 sec) [ -19136.9000] [ 2985] [depth= 17] . ( 92 sec) [ -19080.7858] [ 2971] [depth= 2] . ( 93 sec) [ -19074.8057] [ 2970] [depth= 1] . ( 93 sec) [ -19074.6128] [ 2969] [depth= 7] . ( 94 sec) [ -19028.9762] [ 2962] [depth= 18] . ( 94 sec) [ -19017.4605] [ 2955] [depth= 1] . ( 95 sec) [ -19014.6954] [ 2954] [depth= 2] . ( 95 sec) [ -19014.4191] [ 2954] [depth= 7] . ( 96 sec) [ -18980.5042] [ 2939] [depth= 2] . ( 97 sec) [ -18969.5085] [ 2936] [depth= 8] . ( 97 sec) [ -18800.9555] [ 2936] [depth= 1] . ( 98 sec) [ -18670.6635] [ 2889] [depth= 12] . ( 99 sec) [ -18663.3425] [ 2887] [depth= 8] . ( 99 sec) [ -18624.4965] [ 2871] [depth= 10] . ( 99 sec) [ -18623.1005] [ 2874] [depth= 1] . ( 100 sec) [ -18555.2417] [ 2856] [depth= 14] . ( 100 sec) [ -18548.3575] [ 2855] [depth= 7] . ( 100 sec) [ -18531.9468] [ 2854] [depth= 4] . ( 101 sec) [ -18509.9171] [ 2846] [depth= 2] . ( 102 sec) [ -18400.3568] [ 2817] [depth= 13] . ( 102 sec) [ -18398.5861] [ 2819] [depth= 1] . ( 103 sec) [ -18396.5882] [ 2822] [depth= 14] . ( 104 sec) [ -18382.7009] [ 2821] [depth= 1] . ( 104 sec) [ -18381.9391] [ 2825] [depth= 10] . ( 104 sec) [ -18367.7340] [ 2823] [depth= 2] . ( 105 sec) [ -18343.3689] [ 2818] [depth= 1] . ( 105 sec) [ -18332.7933] [ 2822] [depth= 7] . ( 106 sec) [ -18316.2751] [ 2818] [depth= 4] . ( 106 sec) [ -18278.2593] [ 2819] [depth= 2] . ( 106 sec) [ -18246.6687] [ 2807] [depth= 20] . ( 107 sec) [ -18197.0218] [ 2797] [depth= 23] . ( 107 sec) [ -18192.6747] [ 2794] [depth= 2] . ( 107 sec) [ -18035.3460] [ 2763] [depth= 17] . ( 108 sec) [ -18011.4212] [ 2759] [depth= 3] . ( 108 sec) [ -18007.2433] [ 2756] [depth= 1] . ( 108 sec) [ -17986.0788] [ 2750] [depth= 13] . ( 109 sec) [ -17984.5872] [ 2750] [depth= 5] . ( 109 sec) [ -17980.9873] [ 2750] [depth= 1] . ( 110 sec) [ -17975.6752] [ 2750] [depth= 3] . ( 110 sec) [ -17974.0471] [ 2750] [depth= 1] . ( 110 sec) [ -17961.9300] [ 2746] [depth= 10] . ( 111 sec) [ -17961.5219] [ 2741] [depth= 5] . ( 111 sec) [ -17947.4654] [ 2739] [depth= 4] . ( 112 sec) [ -17936.0516] [ 2736] [depth= 1] . ( 112 sec) [ -17907.8869] [ 2732] [depth= 5] . ( 113 sec) [ -17894.5597] [ 2731] [depth= 3] . ( 113 sec) [ -17870.1699] [ 2729] [depth= 8] . ( 114 sec) [ -17849.7434] [ 2730] [depth= 1] . ( 115 sec) [ -17847.5360] [ 2729] [depth= 1] . ( 115 sec) [ -17806.7145] [ 2716] [depth= 3] . ( 116 sec) [ -17790.7041] [ 2710] [depth= 1] . ( 117 sec) [ -17685.5468] [ 2685] [depth= 5] . ( 117 sec) [ -17675.4543] [ 2675] [depth= 2] . ( 117 sec) [ -17657.6909] [ 2673] [depth= 2] . ( 118 sec) [ -17635.4681] [ 2673] [depth= 1] . ( 118 sec) [ -17542.6832] [ 2650] [depth= 14] . ( 118 sec) [ -17538.7878] [ 2649] [depth= 1] . ( 119 sec) [ -17526.3027] [ 2648] [depth= 3] . ( 119 sec) [ -17475.5120] [ 2648] [depth= 1] . ( 120 sec) [ -17409.1660] [ 2631] [depth= 6] . ( 120 sec) [ -17408.6268] [ 2630] [depth= 6] . ( 120 sec) [ -17389.2810] [ 2628] [depth= 3] . ( 120 sec) [ -17389.2241] [ 2628] [depth= 1] . ( 121 sec) [ -17387.0585] [ 2629] [depth= 1] . ( 121 sec) [ -17382.4348] [ 2627] [depth= 7] . ( 122 sec) [ -17294.1497] [ 2599] [depth= 12] . ( 122 sec) [ -17291.1001] [ 2601] [depth= 3] . ( 125 sec) [ -16947.2048] [Branch lengths ] . ( 130 sec) [ -16937.8396] [GTR parameters ] . ( 131 sec) [ -16936.7330] [Alpha ][ 0.466761] . ( 132 sec) [ -16926.7541] [ 2599] [depth= 3] . ( 132 sec) [ -16910.8134] [ 2592] [depth= 6] . ( 133 sec) [ -16910.6514] [ 2596] [depth= 2] . ( 133 sec) [ -16904.0063] [ 2593] [depth= 1] . ( 134 sec) [ -16895.9569] [ 2597] [depth= 15] . ( 135 sec) [ -16891.6430] [ 2593] [depth= 15] . ( 136 sec) [ -16881.2885] [ 2590] [depth= 4] . ( 137 sec) [ -16880.5879] [ 2590] [depth= 1] . ( 139 sec) [ -16879.1768] [ 2590] [depth= 6] . ( 139 sec) [ -16846.6867] [ 2579] [depth= 4] . ( 139 sec) [ -16844.9120] [ 2580] [depth= 2] . ( 140 sec) [ -16827.8481] [ 2567] [depth= 3] . ( 142 sec) [ -16791.1325] [ 2548] [depth= 10] . ( 143 sec) [ -16789.1073] [ 2547] [depth= 1] . ( 143 sec) [ -16773.4097] [ 2543] [depth= 1] . ( 145 sec) [ -16769.0781] [ 2544] [depth= 1] . ( 145 sec) [ -16767.3296] [ 2544] [depth= 1] . ( 147 sec) [ -16765.0386] [ 2544] [depth= 7] . ( 149 sec) [ -16752.7292] [ 2543] [depth= 8] . ( 149 sec) [ -16705.7503] [ 2526] [depth= 14] . ( 150 sec) [ -16701.5083] [ 2524] [depth= 3] . ( 150 sec) [ -16701.4623] [ 2526] [depth= 5] . ( 150 sec) [ -16693.0192] [ 2523] [depth= 1] . ( 151 sec) [ -16684.7076] [ 2521] [depth= 1] . ( 152 sec) [ -16674.0197] [ 2515] [depth= 1] . ( 153 sec) [ -16673.2904] [ 2514] [depth= 1] . ( 153 sec) [ -16666.9002] [ 2512] [depth= 1] . ( 154 sec) [ -16664.4440] [ 2511] [depth= 1] . ( 154 sec) [ -16664.1727] [ 2511] [depth= 2] . ( 156 sec) [ -16638.9241] [ 2510] [depth= 10] . ( 156 sec) [ -16628.0350] [ 2509] [depth= 12] . ( 160 sec) [ -16626.1868] [ 2511] [depth= 7] . ( 161 sec) [ -16615.4629] [ 2508] [depth= 14] . ( 162 sec) [ -16614.7787] [ 2508] [depth= 1] . ( 163 sec) [ -16566.3811] [ 2495] [depth= 6] . ( 168 sec) [ -16559.4772] [ 2496] [depth= 1] . ( 170 sec) [ -16559.4190] [ 2497] [depth= 2] . ( 170 sec) [ -16556.4245] [ 2497] [depth= 2] . ( 171 sec) [ -16550.6568] [ 2495] [depth= 1] . ( 172 sec) [ -16548.3023] [ 2494] [depth= 1] . ( 173 sec) [ -16547.0947] [ 2493] [depth= 3] . ( 176 sec) [ -16545.6522] [ 2495] [depth= 1] . ( 176 sec) [ -16545.5951] [ 2495] [depth= 1] . ( 178 sec) [ -16536.7922] [ 2492] [depth= 1] . ( 182 sec) [ -16535.0963] [ 2492] [depth= 1] . ( 186 sec) [ -16522.4847] [ 2489] [depth= 4] . ( 186 sec) [ -16521.0599] [ 2490] [depth= 4] . ( 187 sec) [ -16520.0772] [ 2492] [depth= 1] . ( 187 sec) [ -16469.0612] [ 2483] [depth= 2] . ( 187 sec) [ -16464.9880] [ 2481] [depth= 5] . ( 188 sec) [ -16462.4070] [ 2480] [depth= 1] . ( 188 sec) [ -16455.8442] [ 2478] [depth= 3] . ( 188 sec) [ -16455.7915] [ 2478] [depth= 2] . ( 190 sec) [ -16455.0438] [ 2478] [depth= 15] . ( 192 sec) [ -16453.7193] [ 2478] [depth= 2] . ( 192 sec) [ -16453.5748] [ 2478] [depth= 1] . ( 194 sec) [ -16443.5710] [ 2474] [depth= 1] . ( 198 sec) [ -16441.3557] [ 2474] [depth= 3] . ( 200 sec) [ -16435.0927] [ 2472] [depth= 2] . ( 202 sec) [ -16434.8168] [ 2473] [depth= 1] . ( 203 sec) [ -16433.0314] [ 2473] [depth= 1] . ( 204 sec) [ -16431.7170] [ 2473] [depth= 5] . ( 205 sec) [ -16429.0708] [ 2470] [depth= 1] . ( 207 sec) [ -16427.4375] [ 2471] [depth= 2] . ( 208 sec) [ -16421.8640] [ 2470] [depth= 2] . ( 214 sec) [ -16421.5117] [ 2470] [depth= 2] . ( 215 sec) [ -16421.0972] [ 2471] [depth= 4] . ( 215 sec) [ -16419.3297] [ 2474] [depth= 5] . ( 216 sec) [ -16414.9159] [ 2472] [depth= 2] . ( 216 sec) [ -16391.9660] [ 2460] [depth= 8] . ( 217 sec) [ -16390.7758] [ 2461] [depth= 1] . ( 217 sec) [ -16390.5326] [ 2461] [depth= 1] . ( 217 sec) [ -16390.4295] [ 2461] [depth= 1] . ( 221 sec) [ -16350.7529] [ 2451] [depth= 1] . ( 222 sec) [ -16342.9721] [ 2450] [depth= 2] . ( 222 sec) [ -16342.1514] [ 2450] [depth= 1] . ( 223 sec) [ -16342.1027] [ 2450] [depth= 1] . ( 224 sec) [ -16341.3514] [ 2451] [depth= 3] . ( 224 sec) [ -16339.8453] [ 2451] [depth= 10] . ( 225 sec) [ -16338.9924] [ 2451] [depth= 1] . ( 225 sec) [ -16338.5214] [ 2450] [depth= 2] . ( 234 sec) [ -16336.1335] [ 2450] [depth= 1] . ( 235 sec) [ -16329.0595] [ 2449] [depth= 1] . ( 237 sec) [ -16328.6086] [ 2448] [depth= 2] . ( 239 sec) [ -16325.5542] [ 2447] [depth= 12] . ( 239 sec) [ -16307.6859] [ 2442] [depth= 1] . ( 242 sec) [ -16295.4432] [ 2441] [depth= 8] . ( 244 sec) [ -16291.7457] [ 2442] [depth= 2] . ( 245 sec) [ -16291.6927] [ 2442] [depth= 1] . ( 245 sec) [ -16286.6101] [ 2443] [depth= 8] . ( 247 sec) [ -16286.3130] [ 2442] [depth= 1] . ( 248 sec) [ -16236.3985] [ 2432] [depth= 1] . ( 249 sec) [ -16230.6128] [ 2429] [depth= 2] . ( 250 sec) [ -16230.5219] [ 2430] [depth= 5] . ( 250 sec) [ -16230.0446] [ 2431] [depth= 5] . ( 250 sec) [ -16221.5612] [ 2429] [depth= 1] . ( 253 sec) [ -16221.5410] [ 2429] [depth= 1] . ( 254 sec) [ -16221.5084] [ 2429] [depth= 1] . ( 254 sec) [ -16221.0782] [ 2428] [depth= 2] . ( 257 sec) [ -16220.8491] [ 2428] [depth= 6] . ( 260 sec) [ -16148.5257] [Branch lengths ] . ( 263 sec) [ -16147.1400] [GTR parameters ] . ( 264 sec) [ -16144.6292] [Alpha ][ 0.420279] . ( 267 sec) [ -16114.2996] [ 2423] [depth= 3] . ( 268 sec) [ -16111.9636] [ 2423] [depth= 1] . ( 269 sec) [ -16111.8800] [ 2423] [depth= 1] . ( 271 sec) [ -16111.6705] [ 2423] [depth= 5] . ( 273 sec) [ -16110.6973] [ 2423] [depth= 1] . ( 275 sec) [ -16105.8065] [ 2425] [depth= 1] . ( 277 sec) [ -16104.5781] [ 2426] [depth= 1] . ( 282 sec) [ -16103.7644] [ 2426] [depth= 1] . ( 286 sec) [ -16103.2710] [ 2427] [depth= 1] . ( 286 sec) [ -16103.0788] [ 2427] [depth= 1] . ( 292 sec) [ -16102.7450] [ 2428] [depth= 4] . ( 294 sec) [ -16101.8964] [ 2427] [depth= 2] . ( 297 sec) [ -16101.7328] [ 2427] [depth= 5] . ( 297 sec) [ -16085.9050] [ 2425] [depth= 10] . ( 308 sec) [ -16085.8335] [ 2425] [depth= 3] . ( 308 sec) [ -16082.7201] [ 2426] [depth= 1] . ( 311 sec) [ -16081.0342] [ 2425] [depth= 1] . ( 313 sec) [ -16079.6559] [ 2425] [depth= 1] . ( 314 sec) [ -16079.3143] [ 2425] [depth= 5] . ( 315 sec) [ -16079.1925] [ 2425] [depth= 1] . ( 317 sec) [ -16078.2151] [ 2428] [depth= 4] . ( 318 sec) [ -16078.1842] [ 2428] [depth= 1] . ( 318 sec) [ -16077.3783] [ 2428] [depth= 2] . ( 319 sec) [ -16076.8521] [ 2426] [depth= 1] . ( 322 sec) [ -16076.8419] [ 2425] [depth= 2] . ( 322 sec) [ -16076.4998] [ 2422] [depth= 1] . ( 325 sec) [ -16075.9830] [ 2422] [depth= 1] . ( 332 sec) [ -16074.6179] [ 2419] [depth= 3] . ( 333 sec) [ -16074.5442] [ 2419] [depth= 1] . ( 335 sec) [ -16074.1628] [ 2419] [depth= 1] . ( 343 sec) [ -16072.9648] [ 2420] [depth= 1] . ( 345 sec) [ -16072.6547] [ 2420] [depth= 2] . ( 347 sec) [ -16072.0148] [ 2419] [depth= 4] . ( 347 sec) [ -16059.1124] [ 2415] [depth= 2] . ( 348 sec) [ -16058.0695] [ 2415] [depth= 2] . ( 351 sec) [ -16055.2925] [ 2415] [depth= 3] . ( 351 sec) [ -16055.2101] [ 2415] [depth= 2] . ( 353 sec) [ -16055.1934] [ 2415] [depth= 1] . ( 354 sec) [ -16055.1760] [ 2413] [depth= 1] . ( 358 sec) [ -16055.0567] [ 2414] [depth= 3] . ( 359 sec) [ -16054.7752] [ 2414] [depth= 1] . ( 360 sec) [ -16054.3689] [ 2414] [depth= 1] . ( 368 sec) [ -16051.8692] [ 2413] [depth= 3] . ( 368 sec) [ -16051.8429] [ 2413] [depth= 1] . ( 369 sec) [ -16051.4238] [ 2413] [depth= 2] . ( 369 sec) [ -16051.2148] [ 2413] [depth= 2] . ( 370 sec) [ -16049.5875] [ 2412] [depth= 4] . ( 371 sec) [ -16049.2579] [ 2412] [depth= 1] . ( 373 sec) [ -16049.2312] [ 2412] [depth= 1] . ( 380 sec) [ -16048.9590] [ 2410] [depth= 1] . ( 383 sec) [ -16048.8679] [ 2410] [depth= 4] . ( 387 sec) [ -16048.8388] [ 2410] [depth= 1] . ( 389 sec) [ -16048.8208] [ 2410] [depth= 1] . ( 390 sec) [ -16048.7390] [ 2410] [depth= 2] . ( 391 sec) [ -16048.5342] [ 2411] [depth= 1] . ( 393 sec) [ -16047.8030] [ 2410] [depth= 3] . ( 394 sec) [ -16046.8589] [ 2410] [depth= 1] . ( 398 sec) [ -16046.7944] [ 2411] [depth= 5] . ( 398 sec) [ -16046.2302] [ 2411] [depth= 1] . ( 399 sec) [ -16045.9192] [ 2411] [depth= 2] . ( 403 sec) [ -16020.0510] [Branch lengths ] . ( 406 sec) [ -16019.9930] [GTR parameters ] . ( 406 sec) [ -16018.5294] [Alpha ][ 0.389155] . ( 410 sec) [ -16012.3183] [ 2408] [depth= 1] . ( 421 sec) [ -16012.2382] [ 2408] [depth= 2] . ( 429 sec) [ -16011.1999] [ 2410] [depth= 1] . ( 442 sec) [ -16010.4521] [ 2409] [depth= 2] . ( 448 sec) [ -16010.0308] [ 2408] [depth= 1] . ( 463 sec) [ -16009.9448] [ 2408] [depth= 2] . ( 472 sec) [ -16009.8590] [ 2408] [depth= 1] . ( 491 sec) [ -16009.7424] [ 2408] [depth= 1] . ( 512 sec) [ -16009.7112] [ 2408] [depth= 2] . ( 527 sec) [ -16009.6887] [ 2408] [depth= 1] . ( 555 sec) [ -16009.1278] [ 2407] [depth= 1] . ( 555 sec) [ -16009.0045] [ 2408] [depth= 8] . ( 559 sec) [ -16008.7076] [ 2408] [depth= 1] . ( 593 sec) [ -16008.5507] [ 2408] [depth= 1] . ( 596 sec) [ -16008.4970] [ 2408] [depth= 1] . ( 606 sec) [ -16000.2693] [Branch lengths ] . ( 608 sec) [ -16000.2562] [GTR parameters ] . ( 609 sec) [ -15999.6377] [Alpha ][ 0.370548] . ( 649 sec) [ -15999.6091] [ 2408] [depth= 2] . ( 661 sec) [ -15999.2391] [ 2407] [depth= 1] . ( 667 sec) [ -15999.1852] [ 2407] [depth= 3] . ( 749 sec) [ -15999.0671] [ 2406] [depth= 6] . ( 799 sec) [ -15994.7799] [Branch lengths ] . ( 802 sec) [ -15994.7726] [GTR parameters ] . ( 803 sec) [ -15994.4561] [Alpha ][ 0.358087] . ( 814 sec) [ -15994.4436] [ 2406] [depth= 1] . ( 814 sec) [ -15994.3572] [ 2406] [depth= 5] . ( 831 sec) [ -15994.2241] [ 2406] [depth= 2] . ( 850 sec) [ -15994.1472] [ 2407] [depth= 6] . ( 872 sec) [ -15994.0350] [ 2407] [depth= 2] . ( 916 sec) [ -15993.6179] [ 2408] [depth= 6] . ( 918 sec) [ -15993.6053] [ 2407] [depth= 1] . ( 923 sec) [ -15993.5041] [ 2407] [depth= 1] . ( 927 sec) [ -15993.1549] [ 2407] [depth= 1] . ( 953 sec) [ -15993.0018] [ 2407] [depth= 1] . ( 970 sec) [ -15992.4585] [ 2407] [depth= 1] . ( 984 sec) [ -15992.3524] [ 2407] [depth= 3] . ( 985 sec) [ -15992.3277] [ 2407] [depth= 1] . ( 987 sec) [ -15992.0893] [ 2407] [depth= 1] . ( 999 sec) [ -15987.9603] [Branch lengths ] . ( 1002 sec) [ -15987.9420] [GTR parameters ] . ( 1003 sec) [ -15987.7791] [Alpha ][ 0.349572] . ( 1078 sec) [ -15987.7614] [ 2407] [depth= 1] . ( 1115 sec) [ -15987.7502] [ 2407] [depth= 2] . ( 1198 sec) [ -15986.6507] [Branch lengths ] . ( 1201 sec) [ -15986.6485] [GTR parameters ] . ( 1202 sec) [ -15986.5824] [Alpha ][ 0.344066] . ( 1243 sec) [ -15986.2399] [ 2407] [depth= 2] . ( 1288 sec) [ -15986.2281] [ 2406] [depth= 2] . ( 1295 sec) [ -15986.0903] [ 2406] [depth= 1] . ( 1325 sec) [ -15986.0539] [ 2407] [depth= 1] . ( 1342 sec) [ -15985.8955] [ 2407] [depth= 1] . ( 1345 sec) [ -15985.8719] [ 2412] [depth= 2] . ( 1386 sec) [ -15985.8555] [ 2412] [depth= 2] . ( 1396 sec) [ -15982.2132] [Branch lengths ] . ( 1398 sec) [ -15982.2049] [GTR parameters ] . ( 1399 sec) [ -15982.0943] [Alpha ][ 0.337114] . ( 1613 sec) [ -15981.4683] [Branch lengths ] . ( 1680 sec) [ -15981.2662] [ 2414] [depth= 2] . ( 1797 sec) [ -15981.1922] [ 2412] [depth= 1] . ( 1921 sec) [ -15981.1100] [ 2412] [depth= 1] . ( 1934 sec) [ -15979.0655] [Branch lengths ] . ( 1937 sec) [ -15979.0499] [GTR parameters ] . ( 1937 sec) [ -15978.9103] [Alpha ][ 0.329528] . ( 2244 sec) [ -15978.6159] [Branch lengths ] . ( 2244 sec) [ -15978.6159] [Topology ] . ( 2250 sec) [ -15978.5054] [Topology ] . ( 2257 sec) [ -15978.4226] [Topology ] . ( 2263 sec) [ -15978.3884] [Topology ] . ( 2269 sec) [ -15978.3672] [Topology ] . ( 2275 sec) [ -15978.3527] [Topology ] . ( 2282 sec) [ -15978.3426] [Topology ] . ( 2288 sec) [ -15978.3352] [Topology ] . ( 2291 sec) [ -15978.3319] [GTR parameters ] . ( 2291 sec) [ -15978.2626] [Alpha ][ 0.324325] . ( 2292 sec) [ -15978.2626] [Topology ] . ( 2298 sec) [ -15978.2402] [Topology ] . ( 2304 sec) [ -15978.2250] [Topology ] . ( 2310 sec) [ -15978.2139] [Topology ] . ( 2317 sec) [ -15978.2059] [Topology ] . ( 2323 sec) [ -15978.2000] [Topology ] . ( 2329 sec) [ -15978.1957] [Topology ] . ( 2331 sec) [ -15978.1954] [GTR parameters ] . ( 2331 sec) [ -15978.1882] [Alpha ][ 0.322665] . ( 2331 sec) [ -15978.1882] [Topology ] . ( 2338 sec) [ -15978.1819] [Topology ] . ( 2344 sec) [ -15978.1774] [Topology ] . ( 2350 sec) [ -15978.1740] [Topology ] . ( 2357 sec) [ -15978.1715] [Topology ] . ( 2363 sec) [ -15978.1697] [Topology ] . ( 2369 sec) [ -15978.1683] [Topology ] . ( 2370 sec) [ -15978.1682] [GTR parameters ] . ( 2371 sec) [ -15978.1662] [Alpha ][ 0.321794] . ( 2371 sec) [ -15978.1662] [Topology ] . ( 2377 sec) [ -15978.1643] [Topology ] . ( 2384 sec) [ -15978.1628] [Topology ] . ( 2390 sec) [ -15978.1618] [Topology ] . ( 2396 sec) [ -15978.1610] [Topology ] . ( 2397 sec) [ -15978.1609] [GTR parameters ] . ( 2398 sec) [ -15978.1605] [Alpha ][ 0.321413] . ( 2398 sec) [ -15978.1605] [Topology ] . ( 2405 sec) [ -15978.1597] [Topology ] . ( 2406 sec) [ -15978.1597] [GTR parameters ] . ( 2406 sec) [ -15978.1597] [Alpha ][ 0.321413] . Checking for NNIs, optimizing five branches... . ( 2453 sec) [ -15977.6828] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -15977.682801. . [Random start 3/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 12 sec) [ -29949.6665] [GTR parameters ] . ( 13 sec) [ -29480.3319] [Alpha ][ 0.500960] . ( 14 sec) [ -29350.6063] [ 4622] [depth= 11] . ( 14 sec) [ -29170.9280] [ 4604] [depth= 13] . ( 14 sec) [ -29150.2420] [ 4596] [depth= 5] . ( 15 sec) [ -29124.7098] [ 4596] [depth= 1] . ( 15 sec) [ -29055.9957] [ 4576] [depth= 5] . ( 15 sec) [ -28869.8048] [ 4557] [depth= 4] . ( 16 sec) [ -28739.4203] [ 4548] [depth= 8] . ( 16 sec) [ -28579.5337] [ 4504] [depth= 1] . ( 16 sec) [ -28434.6960] [ 4475] [depth= 13] . ( 16 sec) [ -28419.9976] [ 4475] [depth= 1] . ( 17 sec) [ -28400.6136] [ 4474] [depth= 6] . ( 17 sec) [ -28397.5121] [ 4469] [depth= 2] . ( 17 sec) [ -28342.7644] [ 4467] [depth= 8] . ( 18 sec) [ -28339.9003] [ 4465] [depth= 2] . ( 18 sec) [ -28336.9843] [ 4460] [depth= 13] . ( 18 sec) [ -28274.5953] [ 4449] [depth= 3] . ( 18 sec) [ -28198.1058] [ 4446] [depth= 4] . ( 19 sec) [ -28187.9947] [ 4441] [depth= 11] . ( 19 sec) [ -28147.5395] [ 4434] [depth= 1] . ( 19 sec) [ -28110.0228] [ 4433] [depth= 2] . ( 20 sec) [ -28097.3175] [ 4438] [depth= 4] . ( 20 sec) [ -27820.2815] [ 4359] [depth= 7] . ( 20 sec) [ -27759.5564] [ 4353] [depth= 12] . ( 21 sec) [ -27666.1843] [ 4343] [depth= 2] . ( 21 sec) [ -27631.2744] [ 4333] [depth= 11] . ( 21 sec) [ -27557.8671] [ 4317] [depth= 20] . ( 22 sec) [ -27332.1268] [ 4289] [depth= 18] . ( 22 sec) [ -27294.5629] [ 4283] [depth= 1] . ( 22 sec) [ -27188.2658] [ 4265] [depth= 20] . ( 23 sec) [ -27165.9409] [ 4259] [depth= 1] . ( 23 sec) [ -27055.0473] [ 4237] [depth= 22] . ( 23 sec) [ -26986.9661] [ 4223] [depth= 6] . ( 24 sec) [ -26920.2289] [ 4225] [depth= 19] . ( 24 sec) [ -26917.9492] [ 4226] [depth= 1] . ( 24 sec) [ -26869.1507] [ 4214] [depth= 2] . ( 25 sec) [ -26744.2663] [ 4189] [depth= 13] . ( 25 sec) [ -26742.2674] [ 4190] [depth= 10] . ( 25 sec) [ -26622.3141] [ 4165] [depth= 4] . ( 26 sec) [ -26602.2940] [ 4161] [depth= 9] . ( 26 sec) [ -26546.0185] [ 4143] [depth= 8] . ( 26 sec) [ -26532.7128] [ 4138] [depth= 9] . ( 26 sec) [ -26510.9734] [ 4134] [depth= 2] . ( 27 sec) [ -26376.4726] [ 4116] [depth= 5] . ( 27 sec) [ -26367.8637] [ 4116] [depth= 1] . ( 27 sec) [ -26355.4387] [ 4112] [depth= 7] . ( 28 sec) [ -26285.4255] [ 4099] [depth= 12] . ( 28 sec) [ -26277.6595] [ 4099] [depth= 1] . ( 28 sec) [ -26248.5006] [ 4097] [depth= 5] . ( 29 sec) [ -26179.4360] [ 4094] [depth= 15] . ( 29 sec) [ -26149.0106] [ 4086] [depth= 12] . ( 30 sec) [ -26065.5498] [ 4084] [depth= 15] . ( 30 sec) [ -25895.4234] [ 4056] [depth= 11] . ( 30 sec) [ -25834.1090] [ 4049] [depth= 10] . ( 30 sec) [ -25734.2337] [ 4047] [depth= 1] . ( 31 sec) [ -25651.0283] [ 4020] [depth= 9] . ( 31 sec) [ -25570.7255] [ 4019] [depth= 1] . ( 31 sec) [ -25449.5273] [ 4002] [depth= 17] . ( 32 sec) [ -25409.6865] [ 3992] [depth= 14] . ( 32 sec) [ -25245.3979] [ 3990] [depth= 18] . ( 32 sec) [ -25214.0122] [ 3989] [depth= 1] . ( 33 sec) [ -25153.0173] [ 3986] [depth= 3] . ( 33 sec) [ -25073.8583] [ 3984] [depth= 6] . ( 34 sec) [ -25043.2182] [ 3983] [depth= 1] . ( 34 sec) [ -24998.5842] [ 3979] [depth= 13] . ( 34 sec) [ -24713.7921] [ 3977] [depth= 11] . ( 35 sec) [ -24630.2012] [ 3944] [depth= 1] . ( 35 sec) [ -24325.5864] [ 3884] [depth= 17] . ( 35 sec) [ -24253.0425] [ 3864] [depth= 9] . ( 36 sec) [ -24225.4217] [ 3858] [depth= 4] . ( 36 sec) [ -24196.6239] [ 3856] [depth= 1] . ( 36 sec) [ -24086.5742] [ 3823] [depth= 6] . ( 37 sec) [ -23973.6114] [ 3794] [depth= 11] . ( 37 sec) [ -23953.6465] [ 3793] [depth= 6] . ( 38 sec) [ -23952.7495] [ 3795] [depth= 3] . ( 38 sec) [ -23928.4187] [ 3785] [depth= 9] . ( 38 sec) [ -23904.4741] [ 3776] [depth= 9] . ( 39 sec) [ -23890.0677] [ 3775] [depth= 2] . ( 39 sec) [ -23878.9925] [ 3768] [depth= 1] . ( 39 sec) [ -23855.8094] [ 3758] [depth= 8] . ( 40 sec) [ -23760.7791] [ 3753] [depth= 11] . ( 40 sec) [ -23700.4238] [ 3753] [depth= 1] . ( 40 sec) [ -23637.5452] [ 3727] [depth= 8] . ( 41 sec) [ -23575.4946] [ 3728] [depth= 1] . ( 41 sec) [ -23392.5666] [ 3703] [depth= 14] . ( 41 sec) [ -23314.3804] [ 3699] [depth= 1] . ( 42 sec) [ -23217.7952] [ 3680] [depth= 14] . ( 42 sec) [ -22991.8539] [ 3658] [depth= 8] . ( 42 sec) [ -22934.3057] [ 3635] [depth= 7] . ( 43 sec) [ -22769.5948] [ 3601] [depth= 19] . ( 43 sec) [ -22509.9540] [ 3556] [depth= 19] . ( 43 sec) [ -22505.3739] [ 3554] [depth= 1] . ( 44 sec) [ -22497.0209] [ 3554] [depth= 4] . ( 44 sec) [ -22460.4742] [ 3544] [depth= 1] . ( 44 sec) [ -22410.6561] [ 3527] [depth= 3] . ( 45 sec) [ -22406.3139] [ 3528] [depth= 5] . ( 45 sec) [ -22327.7457] [ 3502] [depth= 6] . ( 45 sec) [ -22303.1117] [ 3502] [depth= 3] . ( 46 sec) [ -22293.4200] [ 3501] [depth= 1] . ( 46 sec) [ -22291.0940] [ 3502] [depth= 3] . ( 46 sec) [ -22274.1952] [ 3502] [depth= 1] . ( 46 sec) [ -22255.3423] [ 3501] [depth= 2] . ( 47 sec) [ -22247.6337] [ 3498] [depth= 12] . ( 47 sec) [ -22204.1890] [ 3490] [depth= 5] . ( 48 sec) [ -22173.7670] [ 3475] [depth= 13] . ( 48 sec) [ -22115.3742] [ 3462] [depth= 1] . ( 48 sec) [ -22114.9442] [ 3463] [depth= 1] . ( 49 sec) [ -22108.1382] [ 3464] [depth= 3] . ( 49 sec) [ -22102.3047] [ 3461] [depth= 12] . ( 49 sec) [ -22050.2272] [ 3447] [depth= 9] . ( 50 sec) [ -22042.4925] [ 3445] [depth= 4] . ( 51 sec) [ -22034.2653] [ 3447] [depth= 31] . ( 51 sec) [ -21935.2414] [ 3415] [depth= 5] . ( 52 sec) [ -21910.5546] [ 3413] [depth= 3] . ( 52 sec) [ -21856.3922] [ 3408] [depth= 18] . ( 52 sec) [ -21854.3694] [ 3412] [depth= 8] . ( 52 sec) [ -21842.4040] [ 3406] [depth= 1] . ( 53 sec) [ -21821.9846] [ 3407] [depth= 1] . ( 53 sec) [ -21706.3828] [ 3387] [depth= 11] . ( 53 sec) [ -21705.4427] [ 3388] [depth= 1] . ( 54 sec) [ -21614.4941] [ 3380] [depth= 14] . ( 54 sec) [ -21609.5614] [ 3377] [depth= 14] . ( 54 sec) [ -21601.1679] [ 3376] [depth= 1] . ( 55 sec) [ -21598.8634] [ 3372] [depth= 8] . ( 55 sec) [ -21592.8620] [ 3374] [depth= 1] . ( 55 sec) [ -21485.8212] [ 3344] [depth= 7] . ( 56 sec) [ -21479.2784] [ 3342] [depth= 7] . ( 56 sec) [ -21439.7746] [ 3331] [depth= 2] . ( 56 sec) [ -21236.2629] [ 3331] [depth= 2] . ( 57 sec) [ -21227.3038] [ 3334] [depth= 21] . ( 57 sec) [ -21193.0830] [ 3324] [depth= 8] . ( 57 sec) [ -21146.0186] [ 3304] [depth= 12] . ( 58 sec) [ -21139.5834] [ 3302] [depth= 2] . ( 58 sec) [ -21099.6255] [ 3288] [depth= 20] . ( 58 sec) [ -21096.2344] [ 3289] [depth= 16] . ( 59 sec) [ -21093.2216] [ 3290] [depth= 5] . ( 59 sec) [ -21082.0331] [ 3287] [depth= 2] . ( 60 sec) [ -20957.5776] [ 3265] [depth= 12] . ( 60 sec) [ -20945.9717] [ 3261] [depth= 4] . ( 60 sec) [ -20926.4684] [ 3259] [depth= 3] . ( 61 sec) [ -20871.2902] [ 3233] [depth= 20] . ( 61 sec) [ -20867.9150] [ 3244] [depth= 1] . ( 61 sec) [ -20829.2501] [ 3233] [depth= 1] . ( 62 sec) [ -20822.2721] [ 3230] [depth= 1] . ( 62 sec) [ -20728.5680] [ 3227] [depth= 8] . ( 62 sec) [ -20711.6607] [ 3224] [depth= 3] . ( 63 sec) [ -20700.8661] [ 3221] [depth= 28] . ( 63 sec) [ -20635.3936] [ 3198] [depth= 27] . ( 63 sec) [ -20628.8040] [ 3198] [depth= 1] . ( 64 sec) [ -20624.5046] [ 3199] [depth= 1] . ( 64 sec) [ -20582.0481] [ 3190] [depth= 11] . ( 64 sec) [ -20576.0330] [ 3189] [depth= 1] . ( 65 sec) [ -20575.6412] [ 3189] [depth= 3] . ( 66 sec) [ -20507.7158] [ 3176] [depth= 16] . ( 66 sec) [ -20474.7972] [ 3179] [depth= 1] . ( 66 sec) [ -20389.5133] [ 3148] [depth= 13] . ( 67 sec) [ -20384.0117] [ 3149] [depth= 1] . ( 67 sec) [ -20371.3536] [ 3148] [depth= 2] . ( 67 sec) [ -20335.4098] [ 3153] [depth= 17] . ( 68 sec) [ -20318.5257] [ 3148] [depth= 1] . ( 68 sec) [ -20311.1355] [ 3147] [depth= 1] . ( 68 sec) [ -20259.9594] [ 3138] [depth= 6] . ( 69 sec) [ -20258.8947] [ 3136] [depth= 3] . ( 69 sec) [ -20247.2434] [ 3136] [depth= 3] . ( 69 sec) [ -20244.3120] [ 3136] [depth= 2] . ( 70 sec) [ -20240.5404] [ 3135] [depth= 2] . ( 70 sec) [ -20083.4112] [ 3112] [depth= 14] . ( 70 sec) [ -20056.6766] [ 3112] [depth= 2] . ( 71 sec) [ -20054.0394] [ 3107] [depth= 15] . ( 71 sec) [ -19977.2218] [ 3096] [depth= 16] . ( 71 sec) [ -19970.2761] [ 3094] [depth= 18] . ( 72 sec) [ -19968.3119] [ 3093] [depth= 1] . ( 72 sec) [ -19962.0809] [ 3093] [depth= 1] . ( 72 sec) [ -19852.4772] [ 3058] [depth= 15] . ( 73 sec) [ -19849.2253] [ 3060] [depth= 1] . ( 73 sec) [ -19824.9410] [ 3059] [depth= 1] . ( 73 sec) [ -19817.4421] [ 3057] [depth= 23] . ( 74 sec) [ -19817.1103] [ 3057] [depth= 1] . ( 74 sec) [ -19815.7649] [ 3058] [depth= 1] . ( 74 sec) [ -19811.1714] [ 3061] [depth= 2] . ( 75 sec) [ -19687.3421] [ 3017] [depth= 13] . ( 75 sec) [ -19660.3687] [ 3014] [depth= 4] . ( 76 sec) [ -19648.4330] [ 3011] [depth= 1] . ( 76 sec) [ -19648.0753] [ 3012] [depth= 3] . ( 77 sec) [ -19644.0274] [ 3013] [depth= 10] . ( 77 sec) [ -19642.1974] [ 3013] [depth= 1] . ( 77 sec) [ -19564.9538] [ 2987] [depth= 12] . ( 78 sec) [ -19553.8600] [ 2984] [depth= 3] . ( 78 sec) [ -19548.9675] [ 2983] [depth= 1] . ( 78 sec) [ -19473.5767] [ 2980] [depth= 11] . ( 78 sec) [ -19466.6574] [ 2980] [depth= 1] . ( 79 sec) [ -19348.0008] [ 2952] [depth= 16] . ( 79 sec) [ -19345.9745] [ 2952] [depth= 1] . ( 79 sec) [ -19338.0660] [ 2951] [depth= 1] . ( 80 sec) [ -19200.4960] [ 2916] [depth= 14] . ( 80 sec) [ -18967.3484] [ 2913] [depth= 9] . ( 80 sec) [ -18963.9727] [ 2912] [depth= 1] . ( 81 sec) [ -18963.1452] [ 2911] [depth= 1] . ( 82 sec) [ -18930.3833] [ 2906] [depth= 1] . ( 82 sec) [ -18929.6644] [ 2905] [depth= 2] . ( 82 sec) [ -18927.3781] [ 2905] [depth= 3] . ( 83 sec) [ -18914.0857] [ 2901] [depth= 2] . ( 83 sec) [ -18908.6720] [ 2898] [depth= 6] . ( 84 sec) [ -18845.7581] [ 2889] [depth= 13] . ( 84 sec) [ -18826.5306] [ 2886] [depth= 6] . ( 84 sec) [ -18821.4415] [ 2886] [depth= 1] . ( 85 sec) [ -18811.6132] [ 2883] [depth= 5] . ( 85 sec) [ -18615.0402] [ 2831] [depth= 17] . ( 85 sec) [ -18602.1248] [ 2824] [depth= 1] . ( 86 sec) [ -18589.5911] [ 2823] [depth= 14] . ( 86 sec) [ -18451.6342] [ 2798] [depth= 10] . ( 87 sec) [ -18451.6079] [ 2799] [depth= 1] . ( 87 sec) [ -18429.2157] [ 2796] [depth= 9] . ( 88 sec) [ -18424.5426] [ 2793] [depth= 1] . ( 89 sec) [ -18341.3860] [ 2785] [depth= 9] . ( 89 sec) [ -18340.1680] [ 2785] [depth= 1] . ( 90 sec) [ -18339.0577] [ 2786] [depth= 1] . ( 90 sec) [ -18331.9488] [ 2783] [depth= 3] . ( 90 sec) [ -18319.1296] [ 2774] [depth= 11] . ( 90 sec) [ -18290.6293] [ 2769] [depth= 4] . ( 91 sec) [ -18251.4337] [ 2764] [depth= 17] . ( 91 sec) [ -18197.8344] [ 2752] [depth= 10] . ( 91 sec) [ -18185.9427] [ 2756] [depth= 1] . ( 92 sec) [ -18166.1625] [ 2749] [depth= 13] . ( 92 sec) [ -18165.3958] [ 2748] [depth= 1] . ( 93 sec) [ -18130.6636] [ 2740] [depth= 2] . ( 93 sec) [ -18129.5874] [ 2741] [depth= 1] . ( 94 sec) [ -18121.4996] [ 2739] [depth= 1] . ( 94 sec) [ -18119.9691] [ 2740] [depth= 8] . ( 95 sec) [ -18114.1544] [ 2741] [depth= 1] . ( 95 sec) [ -18107.3271] [ 2739] [depth= 2] . ( 96 sec) [ -18100.1841] [ 2738] [depth= 1] . ( 96 sec) [ -18089.3050] [ 2736] [depth= 1] . ( 97 sec) [ -18089.2502] [ 2737] [depth= 12] . ( 98 sec) [ -18089.0781] [ 2737] [depth= 2] . ( 98 sec) [ -18084.5705] [ 2735] [depth= 2] . ( 98 sec) [ -18030.3814] [ 2734] [depth= 2] . ( 99 sec) [ -18015.1161] [ 2732] [depth= 14] . ( 99 sec) [ -18005.0314] [ 2736] [depth= 5] . ( 100 sec) [ -18003.0972] [ 2735] [depth= 1] . ( 100 sec) [ -17982.9224] [ 2735] [depth= 2] . ( 100 sec) [ -17916.7835] [ 2741] [depth= 1] . ( 101 sec) [ -17870.8062] [ 2726] [depth= 3] . ( 101 sec) [ -17870.7066] [ 2725] [depth= 5] . ( 102 sec) [ -17867.5963] [ 2723] [depth= 5] . ( 102 sec) [ -17793.1444] [ 2714] [depth= 11] . ( 103 sec) [ -17787.5527] [ 2717] [depth= 1] . ( 105 sec) [ -17763.3913] [ 2709] [depth= 2] . ( 105 sec) [ -17761.9531] [ 2709] [depth= 1] . ( 106 sec) [ -17761.5123] [ 2709] [depth= 1] . ( 107 sec) [ -17739.0567] [ 2707] [depth= 3] . ( 108 sec) [ -17736.6748] [ 2708] [depth= 1] . ( 108 sec) [ -17680.2845] [ 2704] [depth= 4] . ( 109 sec) [ -17678.5846] [ 2704] [depth= 2] . ( 109 sec) [ -17657.5479] [ 2711] [depth= 1] . ( 109 sec) [ -17646.2503] [ 2705] [depth= 4] . ( 110 sec) [ -17645.6838] [ 2705] [depth= 2] . ( 110 sec) [ -17633.2975] [ 2703] [depth= 7] . ( 111 sec) [ -17596.3506] [ 2703] [depth= 1] . ( 112 sec) [ -17591.4404] [ 2702] [depth= 1] . ( 112 sec) [ -17581.9586] [ 2700] [depth= 2] . ( 113 sec) [ -17578.7483] [ 2707] [depth= 14] . ( 113 sec) [ -17574.9178] [ 2706] [depth= 9] . ( 114 sec) [ -17574.0890] [ 2707] [depth= 2] . ( 114 sec) [ -17572.2100] [ 2710] [depth= 2] . ( 114 sec) [ -17561.4744] [ 2708] [depth= 2] . ( 115 sec) [ -17559.0403] [ 2708] [depth= 8] . ( 115 sec) [ -17557.0219] [ 2707] [depth= 1] . ( 116 sec) [ -17504.4658] [ 2695] [depth= 11] . ( 116 sec) [ -17502.9805] [ 2698] [depth= 4] . ( 117 sec) [ -17492.4723] [ 2695] [depth= 10] . ( 117 sec) [ -17474.7118] [ 2690] [depth= 1] . ( 119 sec) [ -17202.3823] [Branch lengths ] . ( 125 sec) [ -17193.4948] [GTR parameters ] . ( 125 sec) [ -17193.1234] [Alpha ][ 0.480631] . ( 126 sec) [ -17188.9193] [ 2689] [depth= 1] . ( 126 sec) [ -17167.3683] [ 2680] [depth= 2] . ( 127 sec) [ -17166.9278] [ 2680] [depth= 1] . ( 127 sec) [ -17146.7151] [ 2673] [depth= 8] . ( 130 sec) [ -17129.9936] [ 2667] [depth= 4] . ( 131 sec) [ -17129.2174] [ 2665] [depth= 4] . ( 131 sec) [ -17116.2914] [ 2665] [depth= 3] . ( 131 sec) [ -17105.5214] [ 2661] [depth= 7] . ( 132 sec) [ -17076.9137] [ 2651] [depth= 2] . ( 133 sec) [ -17067.3296] [ 2648] [depth= 2] . ( 133 sec) [ -17061.6057] [ 2648] [depth= 4] . ( 134 sec) [ -17061.0499] [ 2648] [depth= 1] . ( 134 sec) [ -17057.2626] [ 2645] [depth= 11] . ( 134 sec) [ -17057.2445] [ 2645] [depth= 3] . ( 136 sec) [ -17043.6403] [ 2640] [depth= 5] . ( 137 sec) [ -17006.4108] [ 2627] [depth= 8] . ( 139 sec) [ -17006.1595] [ 2627] [depth= 1] . ( 140 sec) [ -17004.8690] [ 2626] [depth= 3] . ( 140 sec) [ -17004.8149] [ 2625] [depth= 8] . ( 141 sec) [ -17004.3956] [ 2625] [depth= 4] . ( 141 sec) [ -16930.6806] [ 2612] [depth= 6] . ( 142 sec) [ -16930.6611] [ 2612] [depth= 1] . ( 142 sec) [ -16888.8306] [ 2598] [depth= 6] . ( 143 sec) [ -16888.7648] [ 2597] [depth= 1] . ( 144 sec) [ -16886.5620] [ 2600] [depth= 1] . ( 144 sec) [ -16883.3157] [ 2599] [depth= 1] . ( 148 sec) [ -16882.5464] [ 2599] [depth= 1] . ( 148 sec) [ -16881.8702] [ 2599] [depth= 3] . ( 149 sec) [ -16881.3925] [ 2599] [depth= 1] . ( 149 sec) [ -16869.6976] [ 2598] [depth= 4] . ( 150 sec) [ -16869.1456] [ 2597] [depth= 2] . ( 151 sec) [ -16868.9077] [ 2597] [depth= 1] . ( 152 sec) [ -16854.7629] [ 2592] [depth= 1] . ( 153 sec) [ -16845.4644] [ 2585] [depth= 1] . ( 153 sec) [ -16824.3988] [ 2570] [depth= 2] . ( 154 sec) [ -16813.6043] [ 2565] [depth= 7] . ( 155 sec) [ -16813.4145] [ 2564] [depth= 8] . ( 156 sec) [ -16812.8623] [ 2564] [depth= 5] . ( 157 sec) [ -16810.9256] [ 2567] [depth= 1] . ( 157 sec) [ -16761.6151] [ 2555] [depth= 5] . ( 157 sec) [ -16755.9967] [ 2554] [depth= 4] . ( 158 sec) [ -16755.3956] [ 2554] [depth= 1] . ( 158 sec) [ -16750.4093] [ 2554] [depth= 1] . ( 159 sec) [ -16739.8048] [ 2552] [depth= 1] . ( 159 sec) [ -16739.5392] [ 2553] [depth= 1] . ( 160 sec) [ -16739.1514] [ 2554] [depth= 1] . ( 160 sec) [ -16738.3740] [ 2554] [depth= 1] . ( 161 sec) [ -16738.0122] [ 2556] [depth= 1] . ( 161 sec) [ -16700.7504] [ 2545] [depth= 24] . ( 162 sec) [ -16700.1366] [ 2547] [depth= 6] . ( 164 sec) [ -16679.9887] [ 2540] [depth= 8] . ( 165 sec) [ -16679.6922] [ 2540] [depth= 1] . ( 166 sec) [ -16679.4239] [ 2540] [depth= 1] . ( 166 sec) [ -16678.8904] [ 2540] [depth= 1] . ( 167 sec) [ -16675.6349] [ 2541] [depth= 6] . ( 167 sec) [ -16674.8491] [ 2541] [depth= 3] . ( 168 sec) [ -16628.8992] [ 2534] [depth= 1] . ( 168 sec) [ -16628.0534] [ 2533] [depth= 2] . ( 169 sec) [ -16619.0585] [ 2532] [depth= 1] . ( 169 sec) [ -16618.8509] [ 2534] [depth= 1] . ( 173 sec) [ -16617.7818] [ 2535] [depth= 2] . ( 173 sec) [ -16615.6702] [ 2535] [depth= 1] . ( 174 sec) [ -16612.2749] [ 2533] [depth= 4] . ( 174 sec) [ -16611.9822] [ 2534] [depth= 1] . ( 174 sec) [ -16603.2955] [ 2532] [depth= 7] . ( 175 sec) [ -16602.2892] [ 2532] [depth= 1] . ( 176 sec) [ -16599.8277] [ 2532] [depth= 2] . ( 176 sec) [ -16599.2966] [ 2532] [depth= 1] . ( 177 sec) [ -16555.9649] [ 2532] [depth= 23] . ( 179 sec) [ -16528.8425] [ 2523] [depth= 6] . ( 179 sec) [ -16524.8310] [ 2522] [depth= 1] . ( 180 sec) [ -16523.9079] [ 2522] [depth= 1] . ( 181 sec) [ -16489.7277] [ 2512] [depth= 4] . ( 181 sec) [ -16478.4487] [ 2509] [depth= 1] . ( 183 sec) [ -16478.3996] [ 2509] [depth= 1] . ( 183 sec) [ -16475.5006] [ 2508] [depth= 3] . ( 183 sec) [ -16472.6625] [ 2508] [depth= 1] . ( 184 sec) [ -16465.7593] [ 2504] [depth= 1] . ( 184 sec) [ -16465.0783] [ 2502] [depth= 1] . ( 185 sec) [ -16462.6710] [ 2500] [depth= 4] . ( 186 sec) [ -16459.6857] [ 2501] [depth= 2] . ( 187 sec) [ -16457.6873] [ 2501] [depth= 5] . ( 190 sec) [ -16457.0699] [ 2501] [depth= 1] . ( 190 sec) [ -16456.1711] [ 2501] [depth= 2] . ( 192 sec) [ -16445.8552] [ 2501] [depth= 1] . ( 193 sec) [ -16445.7853] [ 2501] [depth= 3] . ( 193 sec) [ -16445.7612] [ 2501] [depth= 1] . ( 194 sec) [ -16444.2803] [ 2502] [depth= 1] . ( 194 sec) [ -16444.0329] [ 2502] [depth= 2] . ( 195 sec) [ -16405.2139] [ 2490] [depth= 11] . ( 196 sec) [ -16404.4588] [ 2490] [depth= 1] . ( 196 sec) [ -16403.1120] [ 2491] [depth= 2] . ( 197 sec) [ -16402.0443] [ 2491] [depth= 1] . ( 197 sec) [ -16401.7729] [ 2491] [depth= 1] . ( 198 sec) [ -16401.7560] [ 2491] [depth= 2] . ( 199 sec) [ -16401.7450] [ 2491] [depth= 1] . ( 200 sec) [ -16401.6708] [ 2491] [depth= 1] . ( 200 sec) [ -16389.4990] [ 2491] [depth= 9] . ( 201 sec) [ -16389.4346] [ 2491] [depth= 1] . ( 201 sec) [ -16361.6609] [ 2484] [depth= 12] . ( 203 sec) [ -16348.1661] [ 2482] [depth= 2] . ( 210 sec) [ -16348.0080] [ 2482] [depth= 1] . ( 211 sec) [ -16347.6626] [ 2483] [depth= 4] . ( 216 sec) [ -16342.3321] [ 2483] [depth= 2] . ( 216 sec) [ -16334.5541] [ 2482] [depth= 4] . ( 217 sec) [ -16334.4162] [ 2482] [depth= 1] . ( 218 sec) [ -16333.3547] [ 2486] [depth= 1] . ( 219 sec) [ -16332.7281] [ 2485] [depth= 2] . ( 223 sec) [ -16201.7683] [ 2421] [depth= 25] . ( 224 sec) [ -16201.6384] [ 2421] [depth= 1] . ( 226 sec) [ -16199.6307] [ 2421] [depth= 1] . ( 232 sec) [ -16198.2169] [ 2421] [depth= 1] . ( 233 sec) [ -16198.2056] [ 2421] [depth= 1] . ( 234 sec) [ -16194.9954] [ 2420] [depth= 1] . ( 234 sec) [ -16187.5975] [ 2425] [depth= 1] . ( 235 sec) [ -16185.3814] [ 2425] [depth= 9] . ( 236 sec) [ -16176.6778] [ 2424] [depth= 9] . ( 237 sec) [ -16173.2425] [ 2422] [depth= 1] . ( 238 sec) [ -16172.2501] [ 2421] [depth= 3] . ( 240 sec) [ -16082.5377] [Branch lengths ] . ( 245 sec) [ -16081.4041] [GTR parameters ] . ( 246 sec) [ -16079.8020] [Alpha ][ 0.441072] . ( 247 sec) [ -16079.7788] [ 2421] [depth= 2] . ( 249 sec) [ -16077.4519] [ 2420] [depth= 1] . ( 254 sec) [ -16077.4152] [ 2416] [depth= 2] . ( 255 sec) [ -16076.7238] [ 2420] [depth= 3] . ( 255 sec) [ -16076.6842] [ 2419] [depth= 3] . ( 258 sec) [ -16076.6577] [ 2419] [depth= 1] . ( 266 sec) [ -16076.6091] [ 2419] [depth= 1] . ( 267 sec) [ -16069.9926] [ 2414] [depth= 1] . ( 267 sec) [ -16068.0359] [ 2414] [depth= 1] . ( 270 sec) [ -16067.9815] [ 2414] [depth= 1] . ( 271 sec) [ -16067.9451] [ 2414] [depth= 1] . ( 271 sec) [ -16066.1457] [ 2412] [depth= 1] . ( 272 sec) [ -16065.5127] [ 2411] [depth= 2] . ( 275 sec) [ -16065.4662] [ 2411] [depth= 2] . ( 277 sec) [ -16065.0894] [ 2411] [depth= 2] . ( 282 sec) [ -16064.8753] [ 2411] [depth= 5] . ( 283 sec) [ -16064.7903] [ 2411] [depth= 1] . ( 287 sec) [ -16064.4957] [ 2410] [depth= 4] . ( 290 sec) [ -16062.9209] [ 2409] [depth= 2] . ( 293 sec) [ -16062.7603] [ 2409] [depth= 3] . ( 302 sec) [ -16060.1404] [ 2408] [depth= 2] . ( 305 sec) [ -16059.4595] [ 2408] [depth= 2] . ( 306 sec) [ -16059.0848] [ 2408] [depth= 4] . ( 307 sec) [ -16058.9698] [ 2408] [depth= 2] . ( 312 sec) [ -16058.8314] [ 2408] [depth= 1] . ( 316 sec) [ -16055.3965] [ 2408] [depth= 3] . ( 328 sec) [ -16053.7609] [ 2409] [depth= 3] . ( 333 sec) [ -16053.6583] [ 2409] [depth= 1] . ( 334 sec) [ -16053.5419] [ 2408] [depth= 4] . ( 343 sec) [ -16053.4703] [ 2408] [depth= 2] . ( 344 sec) [ -16053.3505] [ 2408] [depth= 2] . ( 350 sec) [ -16053.1802] [ 2408] [depth= 1] . ( 351 sec) [ -16052.9393] [ 2408] [depth= 2] . ( 353 sec) [ -16052.8034] [ 2408] [depth= 1] . ( 354 sec) [ -16050.0379] [ 2406] [depth= 8] . ( 364 sec) [ -16050.0057] [ 2406] [depth= 1] . ( 367 sec) [ -16049.8330] [ 2407] [depth= 1] . ( 368 sec) [ -16049.5739] [ 2407] [depth= 1] . ( 371 sec) [ -16048.9530] [ 2407] [depth= 1] . ( 377 sec) [ -16048.8947] [ 2407] [depth= 1] . ( 399 sec) [ -16048.0397] [ 2407] [depth= 9] . ( 400 sec) [ -16047.8530] [ 2406] [depth= 2] . ( 403 sec) [ -16024.4867] [Branch lengths ] . ( 406 sec) [ -16024.4645] [GTR parameters ] . ( 407 sec) [ -16023.7833] [Alpha ][ 0.417871] . ( 417 sec) [ -16022.7634] [ 2404] [depth= 3] . ( 443 sec) [ -16022.4523] [ 2404] [depth= 1] . ( 449 sec) [ -16020.5611] [ 2404] [depth= 3] . ( 451 sec) [ -16019.9255] [ 2404] [depth= 1] . ( 453 sec) [ -16019.8947] [ 2404] [depth= 2] . ( 454 sec) [ -16019.8374] [ 2404] [depth= 1] . ( 456 sec) [ -16019.8269] [ 2404] [depth= 1] . ( 456 sec) [ -16018.7938] [ 2409] [depth= 4] . ( 471 sec) [ -16018.0435] [ 2409] [depth= 1] . ( 491 sec) [ -16016.0441] [ 2406] [depth= 1] . ( 494 sec) [ -16016.0309] [ 2406] [depth= 1] . ( 509 sec) [ -16015.0948] [ 2404] [depth= 1] . ( 523 sec) [ -16015.0510] [ 2404] [depth= 2] . ( 528 sec) [ -16014.7128] [ 2404] [depth= 1] . ( 542 sec) [ -16014.6824] [ 2404] [depth= 2] . ( 548 sec) [ -16014.3761] [ 2404] [depth= 2] . ( 548 sec) [ -16012.0711] [ 2404] [depth= 1] . ( 558 sec) [ -16011.9341] [ 2404] [depth= 1] . ( 564 sec) [ -16011.8460] [ 2405] [depth= 1] . ( 597 sec) [ -16011.6308] [ 2405] [depth= 1] . ( 602 sec) [ -15994.6121] [Branch lengths ] . ( 606 sec) [ -15994.5889] [GTR parameters ] . ( 606 sec) [ -15993.9662] [Alpha ][ 0.397342] . ( 610 sec) [ -15993.9516] [ 2405] [depth= 1] . ( 613 sec) [ -15993.4815] [ 2405] [depth= 1] . ( 657 sec) [ -15993.4712] [ 2405] [depth= 1] . ( 688 sec) [ -15993.4509] [ 2405] [depth= 3] . ( 730 sec) [ -15993.4008] [ 2405] [depth= 1] . ( 734 sec) [ -15993.3886] [ 2406] [depth= 5] . ( 775 sec) [ -15993.3093] [ 2406] [depth= 1] . ( 797 sec) [ -15992.5096] [ 2406] [depth= 3] . ( 802 sec) [ -15988.2760] [Branch lengths ] . ( 806 sec) [ -15988.2648] [GTR parameters ] . ( 807 sec) [ -15987.8607] [Alpha ][ 0.381855] . ( 858 sec) [ -15987.8461] [ 2406] [depth= 3] . ( 933 sec) [ -15987.8204] [ 2406] [depth= 1] . ( 1009 sec) [ -15985.6653] [Branch lengths ] . ( 1011 sec) [ -15985.6615] [GTR parameters ] . ( 1012 sec) [ -15985.4754] [Alpha ][ 0.371931] . ( 1065 sec) [ -15985.4546] [ 2406] [depth= 3] . ( 1227 sec) [ -15984.2036] [Branch lengths ] . ( 1229 sec) [ -15984.2016] [GTR parameters ] . ( 1230 sec) [ -15984.1110] [Alpha ][ 0.364955] . ( 1450 sec) [ -15982.6709] [Branch lengths ] . ( 1474 sec) [ -15982.6133] [ 2405] [depth= 1] . ( 1526 sec) [ -15982.6017] [ 2405] [depth= 1] . ( 1787 sec) [ -15981.6625] [Branch lengths ] . ( 1790 sec) [ -15981.6605] [GTR parameters ] . ( 1790 sec) [ -15981.5689] [Alpha ][ 0.358136] . ( 2124 sec) [ -15981.4175] [Branch lengths ] . ( 2125 sec) [ -15981.4175] [Topology ] . ( 2131 sec) [ -15981.3841] [Topology ] . ( 2138 sec) [ -15981.3670] [Topology ] . ( 2144 sec) [ -15981.3557] [Topology ] . ( 2151 sec) [ -15981.3478] [Topology ] . ( 2157 sec) [ -15981.3423] [Topology ] . ( 2164 sec) [ -15981.3383] [Topology ] . ( 2166 sec) [ -15981.3368] [GTR parameters ] . ( 2166 sec) [ -15981.3036] [Alpha ][ 0.354108] . ( 2167 sec) [ -15981.3036] [Topology ] . ( 2173 sec) [ -15981.2919] [Topology ] . ( 2180 sec) [ -15981.2843] [Topology ] . ( 2186 sec) [ -15981.2791] [Topology ] . ( 2193 sec) [ -15981.2754] [Topology ] . ( 2199 sec) [ -15981.2728] [Topology ] . ( 2206 sec) [ -15981.2708] [Topology ] . ( 2207 sec) [ -15981.2707] [GTR parameters ] . ( 2208 sec) [ -15981.2669] [Alpha ][ 0.352756] . ( 2208 sec) [ -15981.2669] [Topology ] . ( 2214 sec) [ -15981.2639] [Topology ] . ( 2221 sec) [ -15981.2618] [Topology ] . ( 2227 sec) [ -15981.2603] [Topology ] . ( 2234 sec) [ -15981.2591] [Topology ] . ( 2240 sec) [ -15981.2582] [Topology ] . ( 2241 sec) [ -15981.2582] [GTR parameters ] . ( 2242 sec) [ -15981.2575] [Alpha ][ 0.352159] . ( 2242 sec) [ -15981.2575] [Topology ] . ( 2249 sec) [ -15981.2564] [Topology ] . ( 2255 sec) [ -15981.2556] [Topology ] . ( 2256 sec) [ -15981.2556] [GTR parameters ] . ( 2257 sec) [ -15981.2556] [Alpha ][ 0.352159] . ( 2257 sec) [ -15981.2556] [Topology ] . ( 2264 sec) [ -15981.2549] [Topology ] . ( 2265 sec) [ -15981.2549] [GTR parameters ] . ( 2265 sec) [ -15981.2548] [Alpha ][ 0.351806] . Checking for NNIs, optimizing five branches... . ( 2311 sec) [ -15981.1907] [Topology ] . Checking for NNIs, optimizing five branches... . ( 2356 sec) [ -15981.1890] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -15981.188988. . [Random start 4/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 12 sec) [ -31609.8198] [GTR parameters ] . ( 13 sec) [ -31115.9113] [Alpha ][ 0.500960] . ( 14 sec) [ -31046.1242] [ 4722] [depth= 10] . ( 14 sec) [ -30895.6895] [ 4698] [depth= 9] . ( 14 sec) [ -30885.5336] [ 4696] [depth= 3] . ( 15 sec) [ -30838.4623] [ 4669] [depth= 9] . ( 15 sec) [ -30811.3069] [ 4667] [depth= 3] . ( 15 sec) [ -30735.0140] [ 4666] [depth= 1] . ( 16 sec) [ -30445.3144] [ 4663] [depth= 2] . ( 16 sec) [ -30272.3920] [ 4652] [depth= 9] . ( 16 sec) [ -30228.9974] [ 4602] [depth= 7] . ( 17 sec) [ -30205.7028] [ 4587] [depth= 14] . ( 17 sec) [ -30202.8639] [ 4582] [depth= 6] . ( 17 sec) [ -30165.6238] [ 4583] [depth= 1] . ( 18 sec) [ -30110.1204] [ 4564] [depth= 4] . ( 18 sec) [ -30108.3181] [ 4561] [depth= 4] . ( 18 sec) [ -30065.7757] [ 4548] [depth= 14] . ( 19 sec) [ -29964.6313] [ 4536] [depth= 11] . ( 19 sec) [ -29792.6456] [ 4525] [depth= 3] . ( 19 sec) [ -29779.2419] [ 4523] [depth= 2] . ( 19 sec) [ -29264.1993] [ 4501] [depth= 3] . ( 20 sec) [ -29114.2196] [ 4490] [depth= 8] . ( 20 sec) [ -29054.0030] [ 4479] [depth= 1] . ( 20 sec) [ -29035.7776] [ 4478] [depth= 4] . ( 21 sec) [ -28946.2839] [ 4467] [depth= 10] . ( 21 sec) [ -28927.8871] [ 4463] [depth= 1] . ( 21 sec) [ -28820.0642] [ 4436] [depth= 15] . ( 22 sec) [ -28722.1750] [ 4409] [depth= 17] . ( 22 sec) [ -28673.1107] [ 4405] [depth= 3] . ( 22 sec) [ -28668.7644] [ 4405] [depth= 1] . ( 23 sec) [ -28659.7067] [ 4404] [depth= 1] . ( 23 sec) [ -28577.8989] [ 4397] [depth= 22] . ( 23 sec) [ -28492.8510] [ 4383] [depth= 10] . ( 24 sec) [ -28478.2543] [ 4389] [depth= 21] . ( 24 sec) [ -28414.6751] [ 4377] [depth= 15] . ( 25 sec) [ -28298.7285] [ 4364] [depth= 13] . ( 26 sec) [ -28290.8149] [ 4362] [depth= 1] . ( 26 sec) [ -28098.7068] [ 4353] [depth= 21] . ( 26 sec) [ -28090.8675] [ 4352] [depth= 4] . ( 27 sec) [ -27884.3395] [ 4341] [depth= 17] . ( 27 sec) [ -27708.1174] [ 4312] [depth= 6] . ( 28 sec) [ -27665.4656] [ 4312] [depth= 1] . ( 28 sec) [ -27479.3352] [ 4286] [depth= 5] . ( 28 sec) [ -27424.2570] [ 4281] [depth= 23] . ( 29 sec) [ -27335.1691] [ 4264] [depth= 14] . ( 29 sec) [ -27298.3143] [ 4250] [depth= 12] . ( 30 sec) [ -27192.1241] [ 4238] [depth= 16] . ( 30 sec) [ -26895.5386] [ 4236] [depth= 16] . ( 30 sec) [ -26885.4461] [ 4238] [depth= 13] . ( 31 sec) [ -26566.8610] [ 4190] [depth= 23] . ( 31 sec) [ -26353.6124] [ 4140] [depth= 6] . ( 32 sec) [ -26235.0231] [ 4109] [depth= 12] . ( 32 sec) [ -26122.8169] [ 4095] [depth= 10] . ( 32 sec) [ -26057.1926] [ 4085] [depth= 11] . ( 33 sec) [ -26003.4217] [ 4079] [depth= 8] . ( 33 sec) [ -25947.8191] [ 4063] [depth= 12] . ( 33 sec) [ -25942.4359] [ 4064] [depth= 1] . ( 34 sec) [ -25893.0481] [ 4049] [depth= 8] . ( 34 sec) [ -25844.5753] [ 4041] [depth= 19] . ( 34 sec) [ -25843.8279] [ 4041] [depth= 1] . ( 35 sec) [ -25740.3295] [ 4027] [depth= 20] . ( 35 sec) [ -25724.2850] [ 4017] [depth= 14] . ( 35 sec) [ -25638.7199] [ 4009] [depth= 1] . ( 36 sec) [ -25361.9187] [ 4002] [depth= 18] . ( 36 sec) [ -25336.4326] [ 3994] [depth= 20] . ( 37 sec) [ -25322.3274] [ 3992] [depth= 19] . ( 37 sec) [ -25295.9495] [ 3988] [depth= 17] . ( 38 sec) [ -25260.9078] [ 3974] [depth= 14] . ( 38 sec) [ -25206.0965] [ 3971] [depth= 5] . ( 38 sec) [ -25105.2983] [ 3960] [depth= 15] . ( 39 sec) [ -25088.3758] [ 3958] [depth= 3] . ( 40 sec) [ -25000.4248] [ 3931] [depth= 4] . ( 40 sec) [ -24930.1201] [ 3918] [depth= 15] . ( 40 sec) [ -24922.4386] [ 3917] [depth= 4] . ( 41 sec) [ -24853.6287] [ 3910] [depth= 7] . ( 41 sec) [ -24823.3454] [ 3873] [depth= 4] . ( 41 sec) [ -24798.4353] [ 3872] [depth= 1] . ( 42 sec) [ -24750.1457] [ 3857] [depth= 26] . ( 42 sec) [ -24509.8738] [ 3830] [depth= 12] . ( 43 sec) [ -24509.6299] [ 3832] [depth= 1] . ( 44 sec) [ -24369.4294] [ 3810] [depth= 6] . ( 44 sec) [ -24362.1966] [ 3807] [depth= 6] . ( 44 sec) [ -24205.8183] [ 3807] [depth= 1] . ( 45 sec) [ -24176.2918] [ 3793] [depth= 18] . ( 46 sec) [ -24174.5172] [ 3795] [depth= 1] . ( 46 sec) [ -24166.7001] [ 3792] [depth= 3] . ( 47 sec) [ -24032.8073] [ 3778] [depth= 9] . ( 47 sec) [ -23991.6769] [ 3791] [depth= 1] . ( 47 sec) [ -23873.4553] [ 3776] [depth= 11] . ( 48 sec) [ -23667.7815] [ 3745] [depth= 7] . ( 48 sec) [ -23653.4898] [ 3742] [depth= 2] . ( 49 sec) [ -23638.0533] [ 3734] [depth= 5] . ( 49 sec) [ -23596.0611] [ 3721] [depth= 8] . ( 49 sec) [ -23573.8423] [ 3719] [depth= 4] . ( 50 sec) [ -23570.0168] [ 3713] [depth= 1] . ( 50 sec) [ -23470.5356] [ 3703] [depth= 2] . ( 50 sec) [ -23446.7672] [ 3697] [depth= 1] . ( 51 sec) [ -23426.7295] [ 3676] [depth= 7] . ( 51 sec) [ -23224.5996] [ 3678] [depth= 1] . ( 52 sec) [ -23119.0879] [ 3677] [depth= 1] . ( 52 sec) [ -23094.0101] [ 3650] [depth= 2] . ( 52 sec) [ -23088.3280] [ 3649] [depth= 1] . ( 52 sec) [ -22848.0154] [ 3621] [depth= 1] . ( 53 sec) [ -22831.2758] [ 3617] [depth= 1] . ( 53 sec) [ -22829.9600] [ 3617] [depth= 2] . ( 54 sec) [ -22785.1626] [ 3611] [depth= 14] . ( 54 sec) [ -22753.1131] [ 3599] [depth= 10] . ( 55 sec) [ -22715.2883] [ 3596] [depth= 23] . ( 55 sec) [ -22617.2096] [ 3583] [depth= 13] . ( 56 sec) [ -22615.2369] [ 3583] [depth= 1] . ( 56 sec) [ -22381.3846] [ 3544] [depth= 10] . ( 56 sec) [ -22236.0687] [ 3500] [depth= 6] . ( 57 sec) [ -22227.3285] [ 3503] [depth= 7] . ( 58 sec) [ -22017.7965] [ 3466] [depth= 16] . ( 58 sec) [ -21997.5651] [ 3460] [depth= 3] . ( 58 sec) [ -21866.4708] [ 3449] [depth= 2] . ( 59 sec) [ -21844.7333] [ 3448] [depth= 1] . ( 59 sec) [ -21785.6855] [ 3448] [depth= 7] . ( 59 sec) [ -21674.9789] [ 3416] [depth= 8] . ( 60 sec) [ -21618.0795] [ 3406] [depth= 12] . ( 60 sec) [ -21567.9021] [ 3398] [depth= 7] . ( 61 sec) [ -21517.7471] [ 3390] [depth= 2] . ( 61 sec) [ -21517.1210] [ 3387] [depth= 5] . ( 61 sec) [ -21511.3024] [ 3387] [depth= 1] . ( 62 sec) [ -21508.5818] [ 3387] [depth= 1] . ( 62 sec) [ -21479.1880] [ 3380] [depth= 22] . ( 63 sec) [ -21455.9523] [ 3379] [depth= 7] . ( 64 sec) [ -21401.9722] [ 3370] [depth= 5] . ( 64 sec) [ -21364.1605] [ 3369] [depth= 5] . ( 64 sec) [ -21360.3542] [ 3365] [depth= 2] . ( 65 sec) [ -21316.1169] [ 3365] [depth= 2] . ( 65 sec) [ -21315.4306] [ 3366] [depth= 15] . ( 66 sec) [ -21311.4520] [ 3366] [depth= 1] . ( 66 sec) [ -21282.2372] [ 3360] [depth= 17] . ( 66 sec) [ -21251.5905] [ 3365] [depth= 2] . ( 67 sec) [ -21163.6260] [ 3347] [depth= 2] . ( 67 sec) [ -21149.8851] [ 3346] [depth= 2] . ( 67 sec) [ -20976.5356] [ 3343] [depth= 2] . ( 68 sec) [ -20933.7677] [ 3343] [depth= 1] . ( 68 sec) [ -20769.0905] [ 3325] [depth= 7] . ( 68 sec) [ -20722.2151] [ 3313] [depth= 1] . ( 69 sec) [ -20602.0562] [ 3310] [depth= 14] . ( 69 sec) [ -20562.1318] [ 3293] [depth= 7] . ( 70 sec) [ -20492.9685] [ 3288] [depth= 1] . ( 70 sec) [ -20356.5280] [ 3257] [depth= 11] . ( 71 sec) [ -20345.9505] [ 3256] [depth= 1] . ( 71 sec) [ -20236.4780] [ 3236] [depth= 7] . ( 72 sec) [ -20230.8596] [ 3236] [depth= 1] . ( 72 sec) [ -20079.8744] [ 3196] [depth= 4] . ( 72 sec) [ -20057.1591] [ 3176] [depth= 3] . ( 73 sec) [ -19872.4192] [ 3143] [depth= 17] . ( 73 sec) [ -19776.8887] [ 3121] [depth= 6] . ( 74 sec) [ -19776.5731] [ 3120] [depth= 4] . ( 74 sec) [ -19744.0220] [ 3114] [depth= 4] . ( 74 sec) [ -19740.2301] [ 3115] [depth= 8] . ( 75 sec) [ -19687.0021] [ 3096] [depth= 6] . ( 75 sec) [ -19679.6994] [ 3095] [depth= 1] . ( 76 sec) [ -19655.7732] [ 3087] [depth= 1] . ( 76 sec) [ -19590.8394] [ 3074] [depth= 16] . ( 77 sec) [ -19578.6517] [ 3073] [depth= 4] . ( 77 sec) [ -19562.8903] [ 3073] [depth= 1] . ( 77 sec) [ -19552.5789] [ 3070] [depth= 3] . ( 78 sec) [ -19548.6368] [ 3070] [depth= 1] . ( 78 sec) [ -19543.2929] [ 3070] [depth= 1] . ( 78 sec) [ -19543.0958] [ 3072] [depth= 1] . ( 79 sec) [ -19522.4974] [ 3068] [depth= 3] . ( 80 sec) [ -19521.7565] [ 3073] [depth= 18] . ( 80 sec) [ -19406.8489] [ 3036] [depth= 23] . ( 81 sec) [ -19389.3833] [ 3035] [depth= 1] . ( 81 sec) [ -19382.1129] [ 3033] [depth= 1] . ( 81 sec) [ -19379.9181] [ 3040] [depth= 1] . ( 82 sec) [ -19376.9248] [ 3038] [depth= 1] . ( 84 sec) [ -19375.6529] [ 3039] [depth= 1] . ( 84 sec) [ -19326.2309] [ 3037] [depth= 20] . ( 84 sec) [ -19316.5083] [ 3032] [depth= 2] . ( 85 sec) [ -19282.2688] [ 3021] [depth= 12] . ( 86 sec) [ -19259.8766] [ 3018] [depth= 3] . ( 86 sec) [ -19252.1264] [ 3014] [depth= 9] . ( 86 sec) [ -19246.5183] [ 3007] [depth= 2] . ( 87 sec) [ -19234.9957] [ 3005] [depth= 1] . ( 87 sec) [ -19206.4419] [ 3002] [depth= 2] . ( 87 sec) [ -19203.4420] [ 3001] [depth= 6] . ( 88 sec) [ -19194.1191] [ 2999] [depth= 10] . ( 88 sec) [ -19184.7133] [ 3000] [depth= 1] . ( 88 sec) [ -19143.9545] [ 2989] [depth= 3] . ( 89 sec) [ -19140.7481] [ 2987] [depth= 2] . ( 90 sec) [ -19134.0951] [ 2987] [depth= 1] . ( 91 sec) [ -19096.4315] [ 2982] [depth= 1] . ( 92 sec) [ -19056.5162] [ 2973] [depth= 13] . ( 92 sec) [ -19046.1327] [ 2971] [depth= 1] . ( 92 sec) [ -18987.1645] [ 2950] [depth= 2] . ( 93 sec) [ -18935.4513] [ 2931] [depth= 4] . ( 93 sec) [ -18890.9571] [ 2920] [depth= 1] . ( 93 sec) [ -18890.1752] [ 2922] [depth= 2] . ( 94 sec) [ -18867.0755] [ 2917] [depth= 3] . ( 94 sec) [ -18789.5570] [ 2901] [depth= 6] . ( 95 sec) [ -18695.3506] [ 2880] [depth= 6] . ( 95 sec) [ -18597.4354] [ 2856] [depth= 14] . ( 95 sec) [ -18500.3883] [ 2837] [depth= 4] . ( 96 sec) [ -18486.6811] [ 2836] [depth= 2] . ( 96 sec) [ -18484.6961] [ 2836] [depth= 1] . ( 97 sec) [ -18446.8365] [ 2834] [depth= 6] . ( 97 sec) [ -18436.9169] [ 2833] [depth= 1] . ( 98 sec) [ -18416.9024] [ 2829] [depth= 3] . ( 98 sec) [ -18415.5359] [ 2826] [depth= 1] . ( 98 sec) [ -18409.5432] [ 2827] [depth= 2] . ( 99 sec) [ -18336.3151] [ 2817] [depth= 5] . ( 99 sec) [ -18309.9205] [ 2815] [depth= 5] . ( 99 sec) [ -18131.1657] [ 2816] [depth= 6] . ( 100 sec) [ -18107.3782] [ 2764] [depth= 7] . ( 100 sec) [ -18078.7975] [ 2759] [depth= 2] . ( 100 sec) [ -17933.8803] [ 2746] [depth= 7] . ( 101 sec) [ -17870.0123] [ 2746] [depth= 1] . ( 101 sec) [ -17791.7110] [ 2731] [depth= 1] . ( 102 sec) [ -17758.8335] [ 2728] [depth= 2] . ( 102 sec) [ -17750.8354] [ 2726] [depth= 9] . ( 103 sec) [ -17741.9000] [ 2722] [depth= 1] . ( 105 sec) [ -17728.2966] [ 2722] [depth= 13] . ( 105 sec) [ -17725.5017] [ 2723] [depth= 1] . ( 106 sec) [ -17723.9629] [ 2724] [depth= 1] . ( 106 sec) [ -17717.7479] [ 2724] [depth= 2] . ( 107 sec) [ -17705.8452] [ 2724] [depth= 1] . ( 107 sec) [ -17683.4161] [ 2717] [depth= 5] . ( 108 sec) [ -17681.2505] [ 2718] [depth= 2] . ( 108 sec) [ -17666.1984] [ 2718] [depth= 6] . ( 108 sec) [ -17665.2386] [ 2717] [depth= 1] . ( 109 sec) [ -17665.0576] [ 2716] [depth= 1] . ( 109 sec) [ -17659.6560] [ 2720] [depth= 12] . ( 110 sec) [ -17581.9155] [ 2700] [depth= 17] . ( 110 sec) [ -17576.2453] [ 2698] [depth= 6] . ( 110 sec) [ -17575.4260] [ 2697] [depth= 1] . ( 111 sec) [ -17565.9532] [ 2695] [depth= 2] . ( 111 sec) [ -17521.3584] [ 2682] [depth= 13] . ( 112 sec) [ -17454.0266] [ 2651] [depth= 11] . ( 113 sec) [ -17452.1912] [ 2651] [depth= 1] . ( 113 sec) [ -17450.5628] [ 2651] [depth= 1] . ( 113 sec) [ -17399.7256] [ 2649] [depth= 9] . ( 114 sec) [ -17368.6140] [ 2653] [depth= 5] . ( 116 sec) [ -17358.3908] [ 2654] [depth= 1] . ( 118 sec) [ -17352.0030] [ 2648] [depth= 4] . ( 118 sec) [ -17347.4288] [ 2648] [depth= 1] . ( 118 sec) [ -17329.2065] [ 2640] [depth= 3] . ( 119 sec) [ -17319.2454] [ 2638] [depth= 1] . ( 119 sec) [ -17314.5062] [ 2635] [depth= 3] . ( 119 sec) [ -17307.4595] [ 2638] [depth= 1] . ( 120 sec) [ -17304.8912] [ 2638] [depth= 1] . ( 121 sec) [ -17297.5543] [ 2637] [depth= 11] . ( 121 sec) [ -17297.3839] [ 2639] [depth= 2] . ( 122 sec) [ -17290.3060] [ 2639] [depth= 2] . ( 122 sec) [ -17289.3138] [ 2642] [depth= 1] . ( 122 sec) [ -17287.4458] [ 2641] [depth= 3] . ( 123 sec) [ -17267.5749] [ 2643] [depth= 2] . ( 124 sec) [ -17263.3946] [ 2645] [depth= 8] . ( 124 sec) [ -17217.5894] [ 2638] [depth= 4] . ( 124 sec) [ -17216.0677] [ 2638] [depth= 1] . ( 125 sec) [ -17215.4813] [ 2638] [depth= 1] . ( 125 sec) [ -17212.9437] [ 2638] [depth= 1] . ( 126 sec) [ -17212.0857] [ 2638] [depth= 2] . ( 126 sec) [ -17210.7473] [ 2639] [depth= 1] . ( 127 sec) [ -17205.7820] [ 2653] [depth= 14] . ( 127 sec) [ -17202.9349] [ 2652] [depth= 4] . ( 128 sec) [ -17201.1824] [ 2652] [depth= 2] . ( 128 sec) [ -17199.2045] [ 2652] [depth= 1] . ( 129 sec) [ -17191.4831] [ 2651] [depth= 1] . ( 129 sec) [ -17172.1207] [ 2646] [depth= 8] . ( 131 sec) [ -16901.0960] [Branch lengths ] . ( 137 sec) [ -16886.3841] [GTR parameters ] . ( 137 sec) [ -16885.4922] [Alpha ][ 0.469504] . ( 139 sec) [ -16880.8447] [ 2644] [depth= 1] . ( 140 sec) [ -16838.4643] [ 2631] [depth= 5] . ( 141 sec) [ -16838.3406] [ 2633] [depth= 4] . ( 141 sec) [ -16836.3170] [ 2632] [depth= 1] . ( 142 sec) [ -16829.5052] [ 2630] [depth= 2] . ( 143 sec) [ -16827.8542] [ 2630] [depth= 1] . ( 144 sec) [ -16799.8338] [ 2620] [depth= 9] . ( 144 sec) [ -16799.1750] [ 2621] [depth= 1] . ( 144 sec) [ -16797.7782] [ 2620] [depth= 7] . ( 145 sec) [ -16793.8813] [ 2616] [depth= 3] . ( 145 sec) [ -16792.7825] [ 2612] [depth= 9] . ( 147 sec) [ -16789.7536] [ 2609] [depth= 2] . ( 148 sec) [ -16788.1871] [ 2609] [depth= 11] . ( 149 sec) [ -16787.4249] [ 2608] [depth= 5] . ( 149 sec) [ -16761.1229] [ 2596] [depth= 5] . ( 150 sec) [ -16751.9699] [ 2598] [depth= 3] . ( 152 sec) [ -16749.7264] [ 2598] [depth= 4] . ( 152 sec) [ -16733.4416] [ 2594] [depth= 1] . ( 153 sec) [ -16727.8115] [ 2591] [depth= 3] . ( 153 sec) [ -16685.9075] [ 2579] [depth= 5] . ( 154 sec) [ -16685.6482] [ 2579] [depth= 2] . ( 155 sec) [ -16685.2983] [ 2584] [depth= 2] . ( 156 sec) [ -16685.0627] [ 2584] [depth= 2] . ( 160 sec) [ -16682.7913] [ 2579] [depth= 1] . ( 162 sec) [ -16672.3669] [ 2575] [depth= 4] . ( 162 sec) [ -16633.9028] [ 2563] [depth= 4] . ( 162 sec) [ -16628.6931] [ 2564] [depth= 1] . ( 165 sec) [ -16628.0202] [ 2564] [depth= 2] . ( 165 sec) [ -16627.4787] [ 2564] [depth= 1] . ( 167 sec) [ -16626.8751] [ 2563] [depth= 8] . ( 168 sec) [ -16626.6865] [ 2563] [depth= 1] . ( 168 sec) [ -16610.4624] [ 2559] [depth= 10] . ( 169 sec) [ -16608.3194] [ 2559] [depth= 1] . ( 169 sec) [ -16607.2367] [ 2559] [depth= 2] . ( 170 sec) [ -16560.7533] [ 2548] [depth= 4] . ( 172 sec) [ -16558.2007] [ 2552] [depth= 1] . ( 172 sec) [ -16556.1007] [ 2553] [depth= 1] . ( 172 sec) [ -16555.6400] [ 2552] [depth= 1] . ( 173 sec) [ -16555.0540] [ 2552] [depth= 1] . ( 176 sec) [ -16553.9258] [ 2554] [depth= 4] . ( 176 sec) [ -16551.1778] [ 2553] [depth= 3] . ( 177 sec) [ -16551.0995] [ 2553] [depth= 1] . ( 177 sec) [ -16550.9928] [ 2553] [depth= 1] . ( 178 sec) [ -16521.3305] [ 2545] [depth= 6] . ( 178 sec) [ -16458.4152] [ 2514] [depth= 15] . ( 179 sec) [ -16455.4210] [ 2513] [depth= 8] . ( 180 sec) [ -16455.2791] [ 2513] [depth= 1] . ( 187 sec) [ -16452.4155] [ 2510] [depth= 1] . ( 188 sec) [ -16451.6863] [ 2509] [depth= 5] . ( 189 sec) [ -16449.4013] [ 2508] [depth= 4] . ( 191 sec) [ -16448.3809] [ 2506] [depth= 1] . ( 192 sec) [ -16423.4714] [ 2496] [depth= 2] . ( 193 sec) [ -16422.2396] [ 2496] [depth= 2] . ( 194 sec) [ -16411.3497] [ 2495] [depth= 12] . ( 195 sec) [ -16405.4075] [ 2492] [depth= 1] . ( 195 sec) [ -16396.0407] [ 2490] [depth= 1] . ( 196 sec) [ -16390.5161] [ 2490] [depth= 1] . ( 199 sec) [ -16390.0462] [ 2490] [depth= 1] . ( 200 sec) [ -16387.9995] [ 2493] [depth= 1] . ( 201 sec) [ -16386.5546] [ 2495] [depth= 7] . ( 204 sec) [ -16386.1114] [ 2495] [depth= 1] . ( 205 sec) [ -16385.5701] [ 2495] [depth= 2] . ( 205 sec) [ -16384.0607] [ 2492] [depth= 1] . ( 210 sec) [ -16382.3706] [ 2492] [depth= 1] . ( 211 sec) [ -16381.9190] [ 2492] [depth= 3] . ( 213 sec) [ -16381.6826] [ 2492] [depth= 1] . ( 213 sec) [ -16251.4157] [ 2437] [depth= 20] . ( 214 sec) [ -16224.1875] [ 2427] [depth= 2] . ( 215 sec) [ -16223.7218] [ 2428] [depth= 1] . ( 216 sec) [ -16219.8489] [ 2427] [depth= 3] . ( 216 sec) [ -16215.7956] [ 2426] [depth= 1] . ( 217 sec) [ -16211.6651] [ 2423] [depth= 1] . ( 217 sec) [ -16207.6767] [ 2422] [depth= 2] . ( 219 sec) [ -16206.2586] [ 2423] [depth= 2] . ( 219 sec) [ -16200.0444] [ 2420] [depth= 2] . ( 224 sec) [ -16199.7653] [ 2418] [depth= 7] . ( 225 sec) [ -16195.8441] [ 2418] [depth= 8] . ( 226 sec) [ -16184.2148] [ 2414] [depth= 1] . ( 229 sec) [ -16184.1301] [ 2414] [depth= 3] . ( 232 sec) [ -16184.0306] [ 2414] [depth= 2] . ( 232 sec) [ -16183.6007] [ 2412] [depth= 1] . ( 233 sec) [ -16183.2417] [ 2412] [depth= 1] . ( 235 sec) [ -16175.2387] [ 2416] [depth= 3] . ( 235 sec) [ -16169.0595] [ 2417] [depth= 7] . ( 236 sec) [ -16168.6221] [ 2416] [depth= 5] . ( 237 sec) [ -16166.2665] [ 2417] [depth= 3] . ( 237 sec) [ -16163.9509] [ 2418] [depth= 8] . ( 237 sec) [ -16155.7511] [ 2423] [depth= 1] . ( 238 sec) [ -16155.0276] [ 2423] [depth= 1] . ( 239 sec) [ -16142.4908] [ 2418] [depth= 1] . ( 240 sec) [ -16142.3935] [ 2418] [depth= 1] . ( 243 sec) [ -16141.9260] [ 2418] [depth= 1] . ( 244 sec) [ -16140.2960] [ 2416] [depth= 1] . ( 244 sec) [ -16139.8023] [ 2418] [depth= 1] . ( 245 sec) [ -16139.7472] [ 2418] [depth= 1] . ( 245 sec) [ -16129.2236] [ 2415] [depth= 1] . ( 246 sec) [ -16126.1721] [ 2416] [depth= 6] . ( 250 sec) [ -16126.0706] [ 2417] [depth= 1] . ( 253 sec) [ -16126.0173] [ 2417] [depth= 2] . ( 255 sec) [ -16125.8098] [ 2418] [depth= 1] . ( 255 sec) [ -16125.1482] [ 2418] [depth= 1] . ( 256 sec) [ -16122.7750] [ 2418] [depth= 5] . ( 256 sec) [ -16122.7434] [ 2418] [depth= 1] . ( 260 sec) [ -16122.1109] [ 2419] [depth= 1] . ( 261 sec) [ -16122.0572] [ 2419] [depth= 1] . ( 261 sec) [ -16121.2967] [ 2419] [depth= 1] . ( 263 sec) [ -16116.8107] [ 2417] [depth= 5] . ( 263 sec) [ -16115.7946] [ 2416] [depth= 6] . ( 264 sec) [ -16115.2196] [ 2416] [depth= 4] . ( 264 sec) [ -16114.6057] [ 2416] [depth= 2] . ( 265 sec) [ -16111.1820] [ 2415] [depth= 3] . ( 266 sec) [ -16111.0170] [ 2414] [depth= 7] . ( 266 sec) [ -16110.0270] [ 2414] [depth= 1] . ( 268 sec) [ -16108.9043] [ 2414] [depth= 1] . ( 268 sec) [ -16108.7018] [ 2413] [depth= 2] . ( 271 sec) [ -16024.5338] [Branch lengths ] . ( 274 sec) [ -16023.8056] [GTR parameters ] . ( 275 sec) [ -16022.4339] [Alpha ][ 0.434102] . ( 278 sec) [ -16022.3179] [ 2413] [depth= 1] . ( 280 sec) [ -16020.6663] [ 2413] [depth= 1] . ( 283 sec) [ -16020.3187] [ 2412] [depth= 1] . ( 283 sec) [ -16020.1510] [ 2412] [depth= 8] . ( 284 sec) [ -16020.0303] [ 2412] [depth= 2] . ( 288 sec) [ -16020.0029] [ 2412] [depth= 1] . ( 289 sec) [ -16019.8751] [ 2412] [depth= 1] . ( 296 sec) [ -16019.8310] [ 2412] [depth= 3] . ( 297 sec) [ -16019.3209] [ 2412] [depth= 4] . ( 308 sec) [ -16019.2597] [ 2411] [depth= 1] . ( 321 sec) [ -16019.1222] [ 2411] [depth= 4] . ( 323 sec) [ -16018.9901] [ 2411] [depth= 1] . ( 344 sec) [ -16018.9076] [ 2411] [depth= 1] . ( 353 sec) [ -16018.7667] [ 2411] [depth= 1] . ( 355 sec) [ -16018.5665] [ 2411] [depth= 1] . ( 359 sec) [ -16018.4672] [ 2409] [depth= 1] . ( 363 sec) [ -16018.3923] [ 2408] [depth= 1] . ( 363 sec) [ -16018.1300] [ 2408] [depth= 2] . ( 363 sec) [ -16017.1055] [ 2407] [depth= 3] . ( 367 sec) [ -16016.3094] [ 2407] [depth= 1] . ( 373 sec) [ -16013.4314] [ 2407] [depth= 7] . ( 385 sec) [ -16013.3775] [ 2407] [depth= 1] . ( 387 sec) [ -16013.3590] [ 2407] [depth= 3] . ( 398 sec) [ -16012.9069] [ 2407] [depth= 3] . ( 404 sec) [ -16012.3154] [ 2406] [depth= 8] . ( 409 sec) [ -16011.6549] [ 2406] [depth= 1] . ( 410 sec) [ -16011.3319] [ 2406] [depth= 2] . ( 416 sec) [ -16011.2671] [ 2406] [depth= 1] . ( 417 sec) [ -16011.2382] [ 2406] [depth= 3] . ( 422 sec) [ -16010.4778] [ 2407] [depth= 1] . ( 423 sec) [ -16010.3453] [ 2407] [depth= 2] . ( 431 sec) [ -16009.8534] [ 2407] [depth= 1] . ( 431 sec) [ -16009.8389] [ 2406] [depth= 3] . ( 431 sec) [ -16009.8054] [ 2406] [depth= 1] . ( 435 sec) [ -16009.7898] [ 2406] [depth= 2] . ( 444 sec) [ -15991.2815] [Branch lengths ] . ( 447 sec) [ -15991.2415] [GTR parameters ] . ( 447 sec) [ -15989.7413] [Alpha ][ 0.401143] . ( 454 sec) [ -15989.3086] [ 2407] [depth= 1] . ( 462 sec) [ -15989.2671] [ 2407] [depth= 1] . ( 464 sec) [ -15989.2377] [ 2408] [depth= 4] . ( 474 sec) [ -15989.0559] [ 2408] [depth= 2] . ( 483 sec) [ -15988.9489] [ 2408] [depth= 1] . ( 496 sec) [ -15988.9356] [ 2408] [depth= 2] . ( 498 sec) [ -15988.9006] [ 2408] [depth= 1] . ( 520 sec) [ -15988.8870] [ 2408] [depth= 1] . ( 538 sec) [ -15988.8515] [ 2408] [depth= 1] . ( 549 sec) [ -15988.7667] [ 2408] [depth= 2] . ( 590 sec) [ -15988.7566] [ 2408] [depth= 2] . ( 600 sec) [ -15988.7183] [ 2407] [depth= 4] . ( 600 sec) [ -15988.6745] [ 2407] [depth= 1] . ( 607 sec) [ -15988.3640] [ 2406] [depth= 2] . ( 614 sec) [ -15988.3285] [ 2406] [depth= 2] . ( 616 sec) [ -15988.2984] [ 2406] [depth= 2] . ( 616 sec) [ -15988.2835] [ 2406] [depth= 1] . ( 619 sec) [ -15988.2472] [ 2406] [depth= 1] . ( 620 sec) [ -15988.2343] [ 2406] [depth= 2] . ( 624 sec) [ -15981.3162] [Branch lengths ] . ( 626 sec) [ -15981.2986] [GTR parameters ] . ( 627 sec) [ -15980.6313] [Alpha ][ 0.381064] . ( 644 sec) [ -15980.2791] [ 2406] [depth= 1] . ( 644 sec) [ -15980.1654] [ 2407] [depth= 4] . ( 666 sec) [ -15980.1518] [ 2407] [depth= 1] . ( 736 sec) [ -15980.1383] [ 2407] [depth= 3] . ( 784 sec) [ -15980.1283] [ 2407] [depth= 1] . ( 816 sec) [ -15980.0402] [ 2407] [depth= 1] . ( 820 sec) [ -15976.3634] [Branch lengths ] . ( 822 sec) [ -15976.3518] [GTR parameters ] . ( 823 sec) [ -15976.0934] [Alpha ][ 0.369341] . ( 829 sec) [ -15976.0825] [ 2409] [depth= 1] . ( 936 sec) [ -15976.0647] [ 2409] [depth= 2] . ( 1014 sec) [ -15976.0519] [ 2409] [depth= 2] . ( 1017 sec) [ -15976.0236] [ 2409] [depth= 1] . ( 1021 sec) [ -15973.5771] [Branch lengths ] . ( 1023 sec) [ -15973.5679] [GTR parameters ] . ( 1024 sec) [ -15973.4356] [Alpha ][ 0.361357] . ( 1226 sec) [ -15973.4188] [ 2409] [depth= 2] . ( 1234 sec) [ -15972.4560] [Branch lengths ] . ( 1237 sec) [ -15972.4539] [GTR parameters ] . ( 1237 sec) [ -15972.3798] [Alpha ][ 0.355271] . ( 1463 sec) [ -15971.8881] [Branch lengths ] . ( 1524 sec) [ -15971.6361] [ 2408] [depth= 1] . ( 1555 sec) [ -15971.5207] [ 2407] [depth= 1] . ( 1558 sec) [ -15971.5081] [ 2407] [depth= 1] . ( 1616 sec) [ -15970.9900] [ 2407] [depth= 3] . ( 1625 sec) [ -15970.9759] [ 2407] [depth= 2] . ( 1800 sec) [ -15970.6761] [Branch lengths ] . ( 1803 sec) [ -15970.6727] [GTR parameters ] . ( 1803 sec) [ -15970.5828] [Alpha ][ 0.348734] . ( 1832 sec) [ -15970.5690] [ 2406] [depth= 5] . ( 2147 sec) [ -15970.3067] [Branch lengths ] . ( 2149 sec) [ -15970.3045] [GTR parameters ] . ( 2150 sec) [ -15970.3001] [Alpha ][ 0.347303] . ( 2150 sec) [ -15970.3001] [Topology ] . ( 2157 sec) [ -15970.0795] [Topology ] . ( 2163 sec) [ -15969.8341] [Topology ] . ( 2170 sec) [ -15969.7663] [Topology ] . ( 2177 sec) [ -15969.7304] [Topology ] . ( 2183 sec) [ -15969.7084] [Topology ] . ( 2190 sec) [ -15969.6941] [Topology ] . ( 2196 sec) [ -15969.6843] [Topology ] . ( 2199 sec) [ -15969.6811] [GTR parameters ] . ( 2199 sec) [ -15969.6460] [Alpha ][ 0.343345] . ( 2200 sec) [ -15969.6460] [Topology ] . ( 2206 sec) [ -15969.6263] [Topology ] . ( 2213 sec) [ -15969.6129] [Topology ] . ( 2219 sec) [ -15969.6035] [Topology ] . ( 2226 sec) [ -15969.5968] [Topology ] . ( 2233 sec) [ -15969.5920] [Topology ] . ( 2239 sec) [ -15969.5885] [Topology ] . ( 2241 sec) [ -15969.5882] [GTR parameters ] . ( 2241 sec) [ -15969.5811] [Alpha ][ 0.341571] . ( 2241 sec) [ -15969.5811] [Topology ] . ( 2248 sec) [ -15969.5755] [Topology ] . ( 2254 sec) [ -15969.5715] [Topology ] . ( 2261 sec) [ -15969.5687] [Topology ] . ( 2267 sec) [ -15969.5667] [Topology ] . ( 2274 sec) [ -15969.5652] [Topology ] . ( 2281 sec) [ -15969.5642] [Topology ] . ( 2282 sec) [ -15969.5641] [GTR parameters ] . ( 2282 sec) [ -15969.5621] [Alpha ][ 0.340641] . ( 2283 sec) [ -15969.5621] [Topology ] . ( 2289 sec) [ -15969.5605] [Topology ] . ( 2296 sec) [ -15969.5593] [Topology ] . ( 2303 sec) [ -15969.5584] [Topology ] . ( 2304 sec) [ -15969.5584] [GTR parameters ] . ( 2304 sec) [ -15969.5582] [Alpha ][ 0.340300] . ( 2305 sec) [ -15969.5582] [Topology ] . ( 2311 sec) [ -15969.5573] [Topology ] . ( 2312 sec) [ -15969.5573] [GTR parameters ] . ( 2313 sec) [ -15969.5573] [Alpha ][ 0.340300] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -15969.557266. . [Random start 5/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 8 sec) [ -31737.9488] [GTR parameters ] . ( 9 sec) [ -31235.8171] [Alpha ][ 0.500960] . ( 10 sec) [ -31176.2147] [ 4669] [depth= 12] . ( 10 sec) [ -30943.4142] [ 4647] [depth= 8] . ( 10 sec) [ -30910.5483] [ 4646] [depth= 2] . ( 11 sec) [ -30875.2370] [ 4638] [depth= 6] . ( 11 sec) [ -30866.6139] [ 4637] [depth= 1] . ( 11 sec) [ -30815.6569] [ 4644] [depth= 4] . ( 12 sec) [ -30796.4498] [ 4643] [depth= 1] . ( 12 sec) [ -30721.0154] [ 4637] [depth= 4] . ( 12 sec) [ -30687.8664] [ 4627] [depth= 9] . ( 12 sec) [ -30681.2054] [ 4624] [depth= 10] . ( 13 sec) [ -30647.6286] [ 4618] [depth= 7] . ( 13 sec) [ -30508.3145] [ 4607] [depth= 5] . ( 13 sec) [ -30355.3830] [ 4564] [depth= 10] . ( 14 sec) [ -30312.5787] [ 4564] [depth= 2] . ( 14 sec) [ -30251.7479] [ 4558] [depth= 3] . ( 14 sec) [ -30224.3996] [ 4556] [depth= 4] . ( 15 sec) [ -30179.2485] [ 4542] [depth= 1] . ( 15 sec) [ -30104.1849] [ 4539] [depth= 4] . ( 15 sec) [ -30036.5529] [ 4537] [depth= 3] . ( 16 sec) [ -29961.4136] [ 4512] [depth= 3] . ( 16 sec) [ -29716.3175] [ 4509] [depth= 10] . ( 16 sec) [ -29698.9497] [ 4505] [depth= 7] . ( 17 sec) [ -29686.9818] [ 4512] [depth= 1] . ( 17 sec) [ -29646.8209] [ 4511] [depth= 11] . ( 17 sec) [ -29190.6384] [ 4456] [depth= 22] . ( 18 sec) [ -29128.8058] [ 4446] [depth= 7] . ( 18 sec) [ -29109.6630] [ 4444] [depth= 5] . ( 19 sec) [ -29059.4896] [ 4423] [depth= 24] . ( 19 sec) [ -28978.3443] [ 4412] [depth= 10] . ( 19 sec) [ -28865.9737] [ 4414] [depth= 19] . ( 20 sec) [ -28848.5682] [ 4414] [depth= 2] . ( 20 sec) [ -28763.4700] [ 4387] [depth= 20] . ( 20 sec) [ -28671.2657] [ 4387] [depth= 1] . ( 21 sec) [ -28534.5057] [ 4354] [depth= 21] . ( 21 sec) [ -28457.1595] [ 4334] [depth= 1] . ( 21 sec) [ -28424.0854] [ 4331] [depth= 1] . ( 22 sec) [ -28273.0924] [ 4320] [depth= 10] . ( 22 sec) [ -28261.4526] [ 4320] [depth= 1] . ( 22 sec) [ -27860.6158] [ 4319] [depth= 20] . ( 23 sec) [ -27661.2003] [ 4266] [depth= 6] . ( 23 sec) [ -27644.4545] [ 4264] [depth= 14] . ( 23 sec) [ -27515.6549] [ 4253] [depth= 14] . ( 24 sec) [ -27444.4125] [ 4253] [depth= 1] . ( 24 sec) [ -27361.9611] [ 4224] [depth= 11] . ( 24 sec) [ -27208.9917] [ 4210] [depth= 21] . ( 25 sec) [ -27104.2020] [ 4198] [depth= 9] . ( 25 sec) [ -27044.5329] [ 4195] [depth= 2] . ( 25 sec) [ -27029.1901] [ 4194] [depth= 1] . ( 26 sec) [ -27003.8142] [ 4187] [depth= 1] . ( 26 sec) [ -26915.7428] [ 4190] [depth= 1] . ( 27 sec) [ -26784.6283] [ 4159] [depth= 29] . ( 27 sec) [ -26764.3439] [ 4155] [depth= 12] . ( 27 sec) [ -26611.5890] [ 4129] [depth= 10] . ( 28 sec) [ -26579.2539] [ 4119] [depth= 1] . ( 28 sec) [ -26534.7028] [ 4104] [depth= 16] . ( 28 sec) [ -26392.5177] [ 4080] [depth= 11] . ( 29 sec) [ -26279.1409] [ 4074] [depth= 21] . ( 29 sec) [ -26160.9862] [ 4070] [depth= 5] . ( 29 sec) [ -26097.3748] [ 4061] [depth= 4] . ( 30 sec) [ -26059.1363] [ 4054] [depth= 22] . ( 30 sec) [ -26055.2412] [ 4054] [depth= 1] . ( 30 sec) [ -25897.0405] [ 4055] [depth= 2] . ( 31 sec) [ -25743.0713] [ 4044] [depth= 11] . ( 31 sec) [ -25726.2305] [ 4039] [depth= 1] . ( 31 sec) [ -25705.8027] [ 4030] [depth= 10] . ( 32 sec) [ -25629.3691] [ 4000] [depth= 8] . ( 32 sec) [ -25626.8343] [ 4001] [depth= 1] . ( 32 sec) [ -25557.9777] [ 3984] [depth= 3] . ( 33 sec) [ -25470.7078] [ 3967] [depth= 11] . ( 33 sec) [ -25443.0725] [ 3958] [depth= 1] . ( 33 sec) [ -25050.7056] [ 3935] [depth= 9] . ( 34 sec) [ -25030.1452] [ 3929] [depth= 2] . ( 34 sec) [ -25000.3047] [ 3917] [depth= 10] . ( 34 sec) [ -24926.4017] [ 3912] [depth= 10] . ( 35 sec) [ -24777.1530] [ 3874] [depth= 12] . ( 35 sec) [ -24642.5344] [ 3864] [depth= 1] . ( 35 sec) [ -24596.0345] [ 3849] [depth= 1] . ( 36 sec) [ -24582.6283] [ 3851] [depth= 3] . ( 36 sec) [ -24549.9008] [ 3856] [depth= 6] . ( 37 sec) [ -24533.5703] [ 3854] [depth= 15] . ( 37 sec) [ -24460.6657] [ 3847] [depth= 16] . ( 37 sec) [ -24438.0498] [ 3841] [depth= 17] . ( 38 sec) [ -24369.2305] [ 3830] [depth= 9] . ( 38 sec) [ -24369.0564] [ 3831] [depth= 1] . ( 38 sec) [ -24336.7795] [ 3829] [depth= 7] . ( 39 sec) [ -24321.6569] [ 3826] [depth= 22] . ( 39 sec) [ -24301.3435] [ 3814] [depth= 1] . ( 39 sec) [ -24245.5441] [ 3797] [depth= 2] . ( 40 sec) [ -24216.1080] [ 3795] [depth= 1] . ( 40 sec) [ -24202.3977] [ 3789] [depth= 1] . ( 41 sec) [ -24086.5850] [ 3771] [depth= 15] . ( 41 sec) [ -24085.6091] [ 3771] [depth= 1] . ( 41 sec) [ -24081.2860] [ 3771] [depth= 1] . ( 42 sec) [ -24078.4415] [ 3771] [depth= 1] . ( 42 sec) [ -24002.8313] [ 3744] [depth= 2] . ( 43 sec) [ -23932.5408] [ 3729] [depth= 14] . ( 44 sec) [ -23926.0116] [ 3728] [depth= 10] . ( 45 sec) [ -23887.1856] [ 3724] [depth= 12] . ( 45 sec) [ -23862.5423] [ 3724] [depth= 1] . ( 45 sec) [ -23831.6440] [ 3722] [depth= 3] . ( 46 sec) [ -23774.8270] [ 3721] [depth= 1] . ( 46 sec) [ -23440.9919] [ 3721] [depth= 1] . ( 46 sec) [ -23427.4505] [ 3690] [depth= 9] . ( 47 sec) [ -23189.1488] [ 3660] [depth= 8] . ( 47 sec) [ -23173.7196] [ 3660] [depth= 1] . ( 47 sec) [ -23035.2603] [ 3655] [depth= 4] . ( 48 sec) [ -23011.2219] [ 3646] [depth= 1] . ( 48 sec) [ -22950.5176] [ 3629] [depth= 9] . ( 49 sec) [ -22888.1158] [ 3620] [depth= 8] . ( 49 sec) [ -22498.9422] [ 3577] [depth= 9] . ( 49 sec) [ -22476.2954] [ 3564] [depth= 3] . ( 50 sec) [ -22472.6684] [ 3562] [depth= 2] . ( 50 sec) [ -22468.8225] [ 3560] [depth= 7] . ( 50 sec) [ -22450.8971] [ 3559] [depth= 4] . ( 51 sec) [ -22449.6243] [ 3554] [depth= 3] . ( 51 sec) [ -22396.0365] [ 3540] [depth= 9] . ( 51 sec) [ -22267.4900] [ 3518] [depth= 11] . ( 52 sec) [ -22103.2333] [ 3462] [depth= 8] . ( 52 sec) [ -21967.8361] [ 3439] [depth= 19] . ( 53 sec) [ -21933.5218] [ 3433] [depth= 15] . ( 53 sec) [ -21926.5828] [ 3428] [depth= 3] . ( 53 sec) [ -21918.2352] [ 3428] [depth= 5] . ( 54 sec) [ -21711.9983] [ 3420] [depth= 10] . ( 54 sec) [ -21671.1643] [ 3404] [depth= 13] . ( 54 sec) [ -21638.2082] [ 3397] [depth= 8] . ( 55 sec) [ -21485.3647] [ 3357] [depth= 9] . ( 55 sec) [ -21480.2645] [ 3361] [depth= 1] . ( 55 sec) [ -21396.3501] [ 3331] [depth= 14] . ( 56 sec) [ -21312.2511] [ 3300] [depth= 10] . ( 56 sec) [ -21279.7516] [ 3296] [depth= 1] . ( 57 sec) [ -21259.8996] [ 3292] [depth= 20] . ( 57 sec) [ -21205.4696] [ 3276] [depth= 1] . ( 57 sec) [ -21166.7107] [ 3268] [depth= 8] . ( 58 sec) [ -21159.0433] [ 3269] [depth= 1] . ( 58 sec) [ -21152.3209] [ 3268] [depth= 1] . ( 58 sec) [ -21100.0251] [ 3244] [depth= 4] . ( 59 sec) [ -21097.4396] [ 3243] [depth= 3] . ( 59 sec) [ -21063.8308] [ 3238] [depth= 5] . ( 59 sec) [ -20960.5651] [ 3239] [depth= 4] . ( 60 sec) [ -20785.6802] [ 3209] [depth= 6] . ( 60 sec) [ -20746.3579] [ 3209] [depth= 2] . ( 60 sec) [ -20710.3595] [ 3207] [depth= 3] . ( 61 sec) [ -20699.6119] [ 3205] [depth= 1] . ( 61 sec) [ -20688.4221] [ 3205] [depth= 2] . ( 61 sec) [ -20673.8917] [ 3205] [depth= 1] . ( 62 sec) [ -20663.3135] [ 3204] [depth= 7] . ( 62 sec) [ -20648.0741] [ 3202] [depth= 24] . ( 62 sec) [ -20581.4680] [ 3178] [depth= 2] . ( 63 sec) [ -20574.0280] [ 3174] [depth= 3] . ( 63 sec) [ -20520.4833] [ 3159] [depth= 26] . ( 63 sec) [ -20486.8484] [ 3154] [depth= 21] . ( 64 sec) [ -20480.0729] [ 3154] [depth= 1] . ( 64 sec) [ -20434.6299] [ 3152] [depth= 27] . ( 65 sec) [ -20286.3786] [ 3142] [depth= 7] . ( 65 sec) [ -20285.2968] [ 3142] [depth= 1] . ( 65 sec) [ -20270.3247] [ 3133] [depth= 3] . ( 66 sec) [ -20263.0879] [ 3128] [depth= 13] . ( 66 sec) [ -20206.9569] [ 3122] [depth= 15] . ( 67 sec) [ -20177.1351] [ 3114] [depth= 6] . ( 67 sec) [ -20085.7423] [ 3096] [depth= 8] . ( 67 sec) [ -19791.4018] [ 3083] [depth= 19] . ( 69 sec) [ -19776.8847] [ 3086] [depth= 21] . ( 69 sec) [ -19746.4593] [ 3091] [depth= 25] . ( 69 sec) [ -19741.2467] [ 3085] [depth= 4] . ( 70 sec) [ -19681.3384] [ 3072] [depth= 1] . ( 70 sec) [ -19677.8178] [ 3069] [depth= 6] . ( 70 sec) [ -19636.6475] [ 3064] [depth= 3] . ( 71 sec) [ -19581.2630] [ 3052] [depth= 5] . ( 71 sec) [ -19567.3504] [ 3048] [depth= 21] . ( 72 sec) [ -19498.3863] [ 3028] [depth= 2] . ( 72 sec) [ -19441.5527] [ 3015] [depth= 3] . ( 72 sec) [ -19432.7570] [ 3009] [depth= 1] . ( 73 sec) [ -19414.6201] [ 3004] [depth= 10] . ( 73 sec) [ -19414.4369] [ 3008] [depth= 2] . ( 73 sec) [ -19409.9399] [ 3006] [depth= 1] . ( 74 sec) [ -19400.4946] [ 3002] [depth= 2] . ( 74 sec) [ -19399.5118] [ 3004] [depth= 7] . ( 74 sec) [ -19398.1453] [ 3004] [depth= 1] . ( 75 sec) [ -19355.6566] [ 2992] [depth= 1] . ( 75 sec) [ -19343.4992] [ 2995] [depth= 2] . ( 76 sec) [ -19299.5118] [ 2987] [depth= 24] . ( 77 sec) [ -19188.6129] [ 2948] [depth= 14] . ( 77 sec) [ -19093.2943] [ 2916] [depth= 10] . ( 78 sec) [ -19088.7291] [ 2914] [depth= 1] . ( 78 sec) [ -19083.2368] [ 2912] [depth= 10] . ( 78 sec) [ -19077.6181] [ 2911] [depth= 7] . ( 79 sec) [ -19057.4732] [ 2909] [depth= 8] . ( 79 sec) [ -19005.4385] [ 2893] [depth= 3] . ( 80 sec) [ -18991.8178] [ 2894] [depth= 1] . ( 80 sec) [ -18984.1595] [ 2893] [depth= 1] . ( 80 sec) [ -18922.0101] [ 2876] [depth= 17] . ( 81 sec) [ -18753.1969] [ 2847] [depth= 19] . ( 81 sec) [ -18665.6243] [ 2826] [depth= 22] . ( 82 sec) [ -18662.3343] [ 2825] [depth= 1] . ( 83 sec) [ -18660.6319] [ 2822] [depth= 2] . ( 84 sec) [ -18655.5364] [ 2822] [depth= 1] . ( 84 sec) [ -18578.4868] [ 2809] [depth= 7] . ( 85 sec) [ -18572.9524] [ 2808] [depth= 1] . ( 86 sec) [ -18567.6755] [ 2812] [depth= 4] . ( 86 sec) [ -18542.7804] [ 2814] [depth= 1] . ( 87 sec) [ -18528.4289] [ 2807] [depth= 2] . ( 87 sec) [ -18505.5941] [ 2802] [depth= 17] . ( 88 sec) [ -18495.9084] [ 2802] [depth= 4] . ( 89 sec) [ -18481.5513] [ 2801] [depth= 3] . ( 89 sec) [ -18461.1402] [ 2799] [depth= 8] . ( 90 sec) [ -18457.2979] [ 2802] [depth= 1] . ( 90 sec) [ -18456.0945] [ 2800] [depth= 2] . ( 90 sec) [ -18433.1764] [ 2795] [depth= 3] . ( 91 sec) [ -18401.2986] [ 2787] [depth= 11] . ( 91 sec) [ -18400.9331] [ 2789] [depth= 8] . ( 92 sec) [ -18351.4096] [ 2771] [depth= 9] . ( 92 sec) [ -18349.4394] [ 2771] [depth= 1] . ( 92 sec) [ -18294.2604] [ 2765] [depth= 1] . ( 93 sec) [ -18256.4035] [ 2748] [depth= 2] . ( 93 sec) [ -18234.3699] [ 2744] [depth= 17] . ( 94 sec) [ -18186.0185] [ 2745] [depth= 3] . ( 94 sec) [ -18016.1931] [ 2743] [depth= 5] . ( 95 sec) [ -17965.9676] [ 2727] [depth= 6] . ( 95 sec) [ -17928.1535] [ 2729] [depth= 20] . ( 96 sec) [ -17927.9181] [ 2730] [depth= 12] . ( 96 sec) [ -17869.8387] [ 2718] [depth= 7] . ( 97 sec) [ -17867.7941] [ 2720] [depth= 1] . ( 97 sec) [ -17867.0176] [ 2722] [depth= 1] . ( 98 sec) [ -17864.2578] [ 2722] [depth= 1] . ( 98 sec) [ -17859.8438] [ 2718] [depth= 6] . ( 98 sec) [ -17854.0715] [ 2709] [depth= 1] . ( 99 sec) [ -17847.9983] [ 2708] [depth= 5] . ( 100 sec) [ -17781.1089] [ 2692] [depth= 4] . ( 100 sec) [ -17769.3933] [ 2690] [depth= 1] . ( 100 sec) [ -17695.5117] [ 2681] [depth= 11] . ( 101 sec) [ -17691.1093] [ 2679] [depth= 8] . ( 101 sec) [ -17676.4298] [ 2678] [depth= 1] . ( 102 sec) [ -17676.2436] [ 2678] [depth= 2] . ( 102 sec) [ -17669.3754] [ 2674] [depth= 1] . ( 102 sec) [ -17667.3395] [ 2674] [depth= 1] . ( 103 sec) [ -17662.0049] [ 2674] [depth= 1] . ( 103 sec) [ -17660.3724] [ 2674] [depth= 1] . ( 103 sec) [ -17655.6287] [ 2673] [depth= 1] . ( 104 sec) [ -17649.7554] [ 2672] [depth= 4] . ( 104 sec) [ -17644.5379] [ 2664] [depth= 3] . ( 105 sec) [ -17625.1174] [ 2660] [depth= 5] . ( 105 sec) [ -17551.5180] [ 2644] [depth= 10] . ( 105 sec) [ -17534.4914] [ 2642] [depth= 18] . ( 106 sec) [ -17531.2847] [ 2644] [depth= 7] . ( 107 sec) [ -17482.5689] [ 2635] [depth= 15] . ( 107 sec) [ -17478.5690] [ 2637] [depth= 1] . ( 108 sec) [ -17452.7841] [ 2636] [depth= 3] . ( 108 sec) [ -17444.9878] [ 2635] [depth= 1] . ( 109 sec) [ -17444.6794] [ 2638] [depth= 3] . ( 109 sec) [ -17435.0034] [ 2636] [depth= 1] . ( 109 sec) [ -17399.0632] [ 2629] [depth= 1] . ( 110 sec) [ -17398.6261] [ 2630] [depth= 12] . ( 111 sec) [ -17397.9380] [ 2630] [depth= 1] . ( 111 sec) [ -17387.1022] [ 2626] [depth= 3] . ( 111 sec) [ -17383.3015] [ 2626] [depth= 3] . ( 112 sec) [ -17374.1761] [ 2626] [depth= 1] . ( 112 sec) [ -17348.7685] [ 2618] [depth= 13] . ( 113 sec) [ -17348.0587] [ 2617] [depth= 1] . ( 113 sec) [ -17346.3904] [ 2616] [depth= 7] . ( 114 sec) [ -17344.9391] [ 2617] [depth= 1] . ( 114 sec) [ -17318.5386] [ 2614] [depth= 13] . ( 116 sec) [ -17318.5091] [ 2618] [depth= 6] . ( 118 sec) [ -16988.1674] [Branch lengths ] . ( 125 sec) [ -16970.5810] [GTR parameters ] . ( 126 sec) [ -16970.3232] [Alpha ][ 0.483778] . ( 127 sec) [ -16967.8215] [ 2617] [depth= 1] . ( 128 sec) [ -16967.5709] [ 2617] [depth= 1] . ( 128 sec) [ -16965.9268] [ 2616] [depth= 4] . ( 128 sec) [ -16934.5121] [ 2612] [depth= 4] . ( 129 sec) [ -16932.6320] [ 2612] [depth= 1] . ( 129 sec) [ -16932.4376] [ 2611] [depth= 1] . ( 129 sec) [ -16931.8289] [ 2610] [depth= 1] . ( 130 sec) [ -16893.5075] [ 2604] [depth= 3] . ( 130 sec) [ -16882.7965] [ 2601] [depth= 2] . ( 130 sec) [ -16881.1789] [ 2598] [depth= 5] . ( 131 sec) [ -16881.1653] [ 2599] [depth= 1] . ( 131 sec) [ -16873.0034] [ 2597] [depth= 1] . ( 132 sec) [ -16872.3147] [ 2597] [depth= 1] . ( 132 sec) [ -16871.4928] [ 2597] [depth= 2] . ( 134 sec) [ -16826.6129] [ 2578] [depth= 12] . ( 134 sec) [ -16740.2347] [ 2547] [depth= 4] . ( 136 sec) [ -16720.2161] [ 2542] [depth= 14] . ( 137 sec) [ -16668.9643] [ 2522] [depth= 17] . ( 137 sec) [ -16668.1082] [ 2522] [depth= 1] . ( 138 sec) [ -16667.8433] [ 2522] [depth= 1] . ( 139 sec) [ -16667.6597] [ 2522] [depth= 5] . ( 140 sec) [ -16667.3111] [ 2522] [depth= 1] . ( 143 sec) [ -16667.1421] [ 2522] [depth= 1] . ( 144 sec) [ -16665.7608] [ 2522] [depth= 2] . ( 144 sec) [ -16665.2076] [ 2522] [depth= 1] . ( 146 sec) [ -16662.0914] [ 2519] [depth= 2] . ( 147 sec) [ -16661.6244] [ 2520] [depth= 1] . ( 147 sec) [ -16658.5722] [ 2525] [depth= 3] . ( 148 sec) [ -16658.4530] [ 2525] [depth= 1] . ( 149 sec) [ -16657.9987] [ 2526] [depth= 1] . ( 149 sec) [ -16657.9574] [ 2526] [depth= 1] . ( 150 sec) [ -16657.4634] [ 2526] [depth= 1] . ( 153 sec) [ -16639.5170] [ 2516] [depth= 11] . ( 156 sec) [ -16638.7324] [ 2517] [depth= 1] . ( 158 sec) [ -16638.5104] [ 2517] [depth= 3] . ( 159 sec) [ -16637.9839] [ 2516] [depth= 13] . ( 159 sec) [ -16608.4654] [ 2510] [depth= 7] . ( 159 sec) [ -16608.2567] [ 2510] [depth= 2] . ( 160 sec) [ -16600.8224] [ 2508] [depth= 3] . ( 160 sec) [ -16576.1200] [ 2506] [depth= 1] . ( 161 sec) [ -16575.8851] [ 2505] [depth= 10] . ( 164 sec) [ -16568.7873] [ 2505] [depth= 2] . ( 166 sec) [ -16566.6877] [ 2504] [depth= 1] . ( 167 sec) [ -16566.0282] [ 2503] [depth= 2] . ( 167 sec) [ -16565.2335] [ 2503] [depth= 3] . ( 169 sec) [ -16563.1322] [ 2505] [depth= 3] . ( 169 sec) [ -16563.0513] [ 2506] [depth= 2] . ( 170 sec) [ -16559.7796] [ 2507] [depth= 9] . ( 171 sec) [ -16559.6434] [ 2507] [depth= 3] . ( 176 sec) [ -16559.2422] [ 2508] [depth= 2] . ( 177 sec) [ -16539.2949] [ 2503] [depth= 1] . ( 177 sec) [ -16539.2787] [ 2503] [depth= 1] . ( 181 sec) [ -16536.8011] [ 2502] [depth= 1] . ( 182 sec) [ -16536.2610] [ 2499] [depth= 4] . ( 182 sec) [ -16534.3526] [ 2501] [depth= 1] . ( 184 sec) [ -16533.7986] [ 2501] [depth= 10] . ( 184 sec) [ -16513.6396] [ 2495] [depth= 4] . ( 185 sec) [ -16512.1762] [ 2493] [depth= 1] . ( 186 sec) [ -16511.8521] [ 2493] [depth= 1] . ( 186 sec) [ -16511.8141] [ 2493] [depth= 5] . ( 187 sec) [ -16507.0692] [ 2492] [depth= 1] . ( 187 sec) [ -16505.0754] [ 2487] [depth= 3] . ( 188 sec) [ -16504.3482] [ 2488] [depth= 2] . ( 188 sec) [ -16495.6618] [ 2486] [depth= 1] . ( 189 sec) [ -16495.6424] [ 2486] [depth= 2] . ( 192 sec) [ -16495.5112] [ 2486] [depth= 2] . ( 194 sec) [ -16495.4956] [ 2486] [depth= 1] . ( 195 sec) [ -16495.2740] [ 2486] [depth= 4] . ( 198 sec) [ -16493.8377] [ 2486] [depth= 1] . ( 199 sec) [ -16493.6149] [ 2487] [depth= 10] . ( 199 sec) [ -16487.6449] [ 2484] [depth= 3] . ( 199 sec) [ -16482.4432] [ 2485] [depth= 1] . ( 200 sec) [ -16479.2343] [ 2486] [depth= 1] . ( 201 sec) [ -16475.2167] [ 2486] [depth= 1] . ( 201 sec) [ -16457.9919] [ 2481] [depth= 7] . ( 201 sec) [ -16447.7402] [ 2480] [depth= 3] . ( 202 sec) [ -16441.8715] [ 2481] [depth= 1] . ( 202 sec) [ -16441.5909] [ 2479] [depth= 1] . ( 203 sec) [ -16441.4091] [ 2480] [depth= 1] . ( 203 sec) [ -16424.7913] [ 2476] [depth= 2] . ( 206 sec) [ -16424.4466] [ 2478] [depth= 2] . ( 206 sec) [ -16423.0527] [ 2478] [depth= 2] . ( 208 sec) [ -16422.5442] [ 2478] [depth= 1] . ( 208 sec) [ -16422.4744] [ 2478] [depth= 1] . ( 209 sec) [ -16422.3086] [ 2478] [depth= 1] . ( 214 sec) [ -16404.4357] [ 2474] [depth= 2] . ( 215 sec) [ -16404.3012] [ 2474] [depth= 1] . ( 217 sec) [ -16404.2675] [ 2473] [depth= 1] . ( 218 sec) [ -16403.5116] [ 2473] [depth= 1] . ( 222 sec) [ -16403.4791] [ 2473] [depth= 1] . ( 223 sec) [ -16402.4000] [ 2472] [depth= 1] . ( 224 sec) [ -16386.1017] [ 2469] [depth= 7] . ( 224 sec) [ -16386.0160] [ 2469] [depth= 2] . ( 225 sec) [ -16384.3071] [ 2468] [depth= 2] . ( 225 sec) [ -16383.6683] [ 2468] [depth= 1] . ( 226 sec) [ -16382.6825] [ 2467] [depth= 2] . ( 226 sec) [ -16382.5217] [ 2467] [depth= 1] . ( 227 sec) [ -16316.7660] [ 2455] [depth= 10] . ( 228 sec) [ -16314.9974] [ 2455] [depth= 3] . ( 231 sec) [ -16312.9565] [ 2456] [depth= 1] . ( 232 sec) [ -16308.2697] [ 2456] [depth= 1] . ( 233 sec) [ -16307.7376] [ 2456] [depth= 3] . ( 234 sec) [ -16306.4259] [ 2456] [depth= 1] . ( 235 sec) [ -16306.3224] [ 2456] [depth= 9] . ( 236 sec) [ -16291.3731] [ 2455] [depth= 3] . ( 240 sec) [ -16291.0842] [ 2456] [depth= 1] . ( 245 sec) [ -16284.4787] [ 2456] [depth= 1] . ( 246 sec) [ -16283.9892] [ 2455] [depth= 1] . ( 248 sec) [ -16210.3961] [ 2434] [depth= 10] . ( 249 sec) [ -16209.4115] [ 2434] [depth= 1] . ( 249 sec) [ -16209.2521] [ 2434] [depth= 1] . ( 250 sec) [ -16209.1235] [ 2434] [depth= 1] . ( 250 sec) [ -16208.9132] [ 2434] [depth= 4] . ( 250 sec) [ -16207.8709] [ 2433] [depth= 2] . ( 251 sec) [ -16204.9520] [ 2431] [depth= 3] . ( 251 sec) [ -16204.8931] [ 2431] [depth= 1] . ( 252 sec) [ -16204.4670] [ 2432] [depth= 2] . ( 253 sec) [ -16203.8796] [ 2431] [depth= 1] . ( 254 sec) [ -16203.2194] [ 2432] [depth= 1] . ( 259 sec) [ -16121.1064] [Branch lengths ] . ( 264 sec) [ -16120.1703] [GTR parameters ] . ( 265 sec) [ -16117.5094] [Alpha ][ 0.433605] . ( 267 sec) [ -16117.4397] [ 2432] [depth= 1] . ( 277 sec) [ -16117.3550] [ 2432] [depth= 1] . ( 282 sec) [ -16115.9340] [ 2434] [depth= 2] . ( 288 sec) [ -16115.8426] [ 2434] [depth= 6] . ( 289 sec) [ -16103.2850] [ 2429] [depth= 2] . ( 291 sec) [ -16103.1651] [ 2428] [depth= 1] . ( 298 sec) [ -16102.8132] [ 2428] [depth= 4] . ( 299 sec) [ -16102.4509] [ 2428] [depth= 3] . ( 303 sec) [ -16102.3704] [ 2429] [depth= 1] . ( 309 sec) [ -16102.3414] [ 2429] [depth= 1] . ( 315 sec) [ -16102.2881] [ 2429] [depth= 2] . ( 315 sec) [ -16102.0047] [ 2428] [depth= 2] . ( 317 sec) [ -16101.9439] [ 2428] [depth= 2] . ( 320 sec) [ -16101.8457] [ 2428] [depth= 1] . ( 325 sec) [ -16101.8113] [ 2428] [depth= 1] . ( 327 sec) [ -16100.8192] [ 2427] [depth= 2] . ( 328 sec) [ -16100.2200] [ 2427] [depth= 1] . ( 328 sec) [ -16099.6498] [ 2427] [depth= 2] . ( 330 sec) [ -16099.3335] [ 2427] [depth= 2] . ( 335 sec) [ -16099.2990] [ 2427] [depth= 3] . ( 342 sec) [ -16095.7904] [ 2427] [depth= 1] . ( 342 sec) [ -16070.5181] [ 2421] [depth= 7] . ( 346 sec) [ -16070.4020] [ 2421] [depth= 1] . ( 349 sec) [ -16069.2311] [ 2421] [depth= 5] . ( 353 sec) [ -16069.2080] [ 2421] [depth= 2] . ( 354 sec) [ -16068.9827] [ 2421] [depth= 2] . ( 355 sec) [ -16068.8299] [ 2421] [depth= 1] . ( 358 sec) [ -16068.7980] [ 2421] [depth= 1] . ( 360 sec) [ -16068.7099] [ 2421] [depth= 1] . ( 376 sec) [ -16068.6970] [ 2422] [depth= 2] . ( 377 sec) [ -16067.4755] [ 2421] [depth= 1] . ( 378 sec) [ -16066.1458] [ 2421] [depth= 1] . ( 383 sec) [ -16066.0542] [ 2421] [depth= 1] . ( 384 sec) [ -16066.0420] [ 2421] [depth= 2] . ( 385 sec) [ -16065.9869] [ 2421] [depth= 3] . ( 389 sec) [ -16049.6027] [ 2417] [depth= 7] . ( 390 sec) [ -16048.2700] [ 2414] [depth= 1] . ( 406 sec) [ -16048.2363] [ 2414] [depth= 3] . ( 407 sec) [ -16048.1601] [ 2414] [depth= 1] . ( 414 sec) [ -16048.1451] [ 2414] [depth= 2] . ( 423 sec) [ -16045.9789] [ 2414] [depth= 5] . ( 430 sec) [ -16045.8210] [ 2414] [depth= 1] . ( 431 sec) [ -16043.7993] [ 2411] [depth= 1] . ( 432 sec) [ -16043.3390] [ 2411] [depth= 1] . ( 441 sec) [ -16043.3282] [ 2411] [depth= 1] . ( 442 sec) [ -16043.2935] [ 2411] [depth= 2] . ( 450 sec) [ -16015.1635] [Branch lengths ] . ( 454 sec) [ -16015.0991] [GTR parameters ] . ( 454 sec) [ -16013.2856] [Alpha ][ 0.397658] . ( 456 sec) [ -16013.0582] [ 2411] [depth= 2] . ( 460 sec) [ -16012.9726] [ 2411] [depth= 1] . ( 464 sec) [ -16012.9567] [ 2411] [depth= 1] . ( 488 sec) [ -16012.8757] [ 2411] [depth= 1] . ( 489 sec) [ -16012.6928] [ 2412] [depth= 2] . ( 491 sec) [ -16012.6675] [ 2411] [depth= 4] . ( 503 sec) [ -16012.6087] [ 2411] [depth= 2] . ( 520 sec) [ -16011.8059] [ 2411] [depth= 1] . ( 538 sec) [ -16011.7454] [ 2411] [depth= 1] . ( 542 sec) [ -16011.7157] [ 2411] [depth= 1] . ( 585 sec) [ -16011.6993] [ 2411] [depth= 1] . ( 591 sec) [ -16011.5829] [ 2411] [depth= 1] . ( 593 sec) [ -16011.5713] [ 2412] [depth= 2] . ( 596 sec) [ -16011.5119] [ 2411] [depth= 1] . ( 623 sec) [ -16011.4966] [ 2411] [depth= 1] . ( 669 sec) [ -16003.3964] [Branch lengths ] . ( 673 sec) [ -16003.3791] [GTR parameters ] . ( 674 sec) [ -16002.6328] [Alpha ][ 0.376697] . ( 676 sec) [ -16002.5178] [ 2410] [depth= 1] . ( 686 sec) [ -16002.0800] [ 2410] [depth= 1] . ( 759 sec) [ -16002.0499] [ 2410] [depth= 4] . ( 766 sec) [ -16001.6529] [ 2410] [depth= 1] . ( 806 sec) [ -16001.5507] [ 2409] [depth= 5] . ( 872 sec) [ -16001.1735] [ 2414] [depth= 2] . ( 898 sec) [ -15994.5267] [Branch lengths ] . ( 902 sec) [ -15994.5187] [GTR parameters ] . ( 903 sec) [ -15994.0762] [Alpha ][ 0.361625] . ( 990 sec) [ -15994.0169] [ 2414] [depth= 1] . ( 1029 sec) [ -15993.8359] [ 2415] [depth= 5] . ( 1122 sec) [ -15991.3883] [Branch lengths ] . ( 1126 sec) [ -15991.3795] [GTR parameters ] . ( 1127 sec) [ -15991.1524] [Alpha ][ 0.351396] . ( 1341 sec) [ -15989.9504] [Branch lengths ] . ( 1376 sec) [ -15989.8283] [ 2414] [depth= 1] . ( 1382 sec) [ -15989.5001] [ 2413] [depth= 1] . ( 1510 sec) [ -15989.4104] [ 2413] [depth= 6] . ( 1523 sec) [ -15989.3816] [ 2412] [depth= 5] . ( 1543 sec) [ -15989.0953] [ 2412] [depth= 1] . ( 1650 sec) [ -15988.2369] [Branch lengths ] . ( 1654 sec) [ -15988.2301] [GTR parameters ] . ( 1655 sec) [ -15988.0543] [Alpha ][ 0.342482] . ( 1701 sec) [ -15986.1619] [ 2412] [depth= 3] . ( 1739 sec) [ -15986.1296] [ 2412] [depth= 2] . ( 1752 sec) [ -15986.0629] [ 2412] [depth= 2] . ( 1783 sec) [ -15985.9808] [ 2411] [depth= 1] . ( 1810 sec) [ -15985.8912] [ 2411] [depth= 1] . ( 1821 sec) [ -15985.7410] [ 2411] [depth= 1] . ( 1856 sec) [ -15985.6999] [ 2411] [depth= 2] . ( 1889 sec) [ -15985.3451] [ 2411] [depth= 1] . ( 1903 sec) [ -15985.1856] [ 2411] [depth= 1] . ( 1964 sec) [ -15984.3505] [Branch lengths ] . ( 1967 sec) [ -15984.3487] [GTR parameters ] . ( 1967 sec) [ -15984.3218] [Alpha ][ 0.339055] . ( 1990 sec) [ -15984.2124] [ 2411] [depth= 1] . ( 2310 sec) [ -15983.9203] [Branch lengths ] . ( 2312 sec) [ -15983.9199] [GTR parameters ] . ( 2313 sec) [ -15983.9048] [Alpha ][ 0.336521] . ( 2313 sec) [ -15983.9048] [Topology ] . ( 2320 sec) [ -15983.8125] [Topology ] . ( 2327 sec) [ -15983.7599] [Topology ] . ( 2334 sec) [ -15983.7237] [Topology ] . ( 2342 sec) [ -15983.6980] [Topology ] . ( 2349 sec) [ -15983.6798] [Topology ] . ( 2357 sec) [ -15983.6669] [Topology ] . ( 2359 sec) [ -15983.6663] [GTR parameters ] . ( 2360 sec) [ -15983.6427] [Alpha ][ 0.333404] . ( 2360 sec) [ -15983.6427] [Topology ] . ( 2367 sec) [ -15983.6231] [Topology ] . ( 2374 sec) [ -15983.6094] [Topology ] . ( 2382 sec) [ -15983.5998] [Topology ] . ( 2390 sec) [ -15983.5929] [Topology ] . ( 2397 sec) [ -15983.5880] [Topology ] . ( 2404 sec) [ -15983.5845] [Topology ] . ( 2406 sec) [ -15983.5843] [GTR parameters ] . ( 2407 sec) [ -15983.5776] [Alpha ][ 0.331750] . ( 2407 sec) [ -15983.5776] [Topology ] . ( 2414 sec) [ -15983.5723] [Topology ] . ( 2422 sec) [ -15983.5686] [Topology ] . ( 2431 sec) [ -15983.5659] [Topology ] . ( 2440 sec) [ -15983.5640] [Topology ] . ( 2448 sec) [ -15983.5626] [Topology ] . ( 2455 sec) [ -15983.5617] [Topology ] . ( 2457 sec) [ -15983.5616] [GTR parameters ] . ( 2457 sec) [ -15983.5598] [Alpha ][ 0.330894] . ( 2458 sec) [ -15983.5598] [Topology ] . ( 2464 sec) [ -15983.5583] [Topology ] . ( 2470 sec) [ -15983.5573] [Topology ] . ( 2477 sec) [ -15983.5565] [Topology ] . ( 2479 sec) [ -15983.5564] [GTR parameters ] . ( 2480 sec) [ -15983.5562] [Alpha ][ 0.330563] . ( 2481 sec) [ -15983.5562] [Topology ] . ( 2489 sec) [ -15983.5555] [Topology ] . ( 2490 sec) [ -15983.5555] [GTR parameters ] . ( 2491 sec) [ -15983.5555] [Alpha ][ 0.330563] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -15983.555468. . Computing pairwise distances... . Building BioNJ tree... . Maximizing likelihood (using NNI moves)... . ( 8 sec) [ -17118.5858] [GTR parameters ] . ( 9 sec) [ -17061.9139] [Alpha ][ 0.510962] . ( 9 sec) [ -17061.9139] [Topology ] . ( 15 sec) [ -16566.4637] [Topology ] . ( 25 sec) [ -16395.7592] [Topology ] . ( 33 sec) [ -16329.6622] [Topology ] . ( 41 sec) [ -16301.5525] [Topology ] . ( 50 sec) [ -16281.5882] [Topology ] . ( 58 sec) [ -16253.3293] [Topology ] . ( 67 sec) [ -16225.5514] [Topology ] . ( 75 sec) [ -16192.4716] [Topology ] . ( 84 sec) [ -16169.6603] [Topology ] . Checking for NNIs, optimizing five branches... . ( 143 sec) [ -16162.8883] [Topology ] . ( 151 sec) [ -16161.1635] [GTR parameters ] . ( 152 sec) [ -16152.8076] [Alpha ][ 0.421205] . ( 152 sec) [ -16152.8076] [Topology ] . ( 161 sec) [ -16146.8031] [Topology ] . ( 170 sec) [ -16143.9114] [Topology ] . ( 178 sec) [ -16142.3110] [Topology ] . ( 187 sec) [ -16141.4056] [Topology ] . ( 194 sec) [ -16140.8910] [Topology ] . ( 202 sec) [ -16140.5715] [Topology ] . ( 209 sec) [ -16140.3591] [Topology ] . Checking for NNIs, optimizing five branches... . ( 262 sec) [ -16140.3560] [Topology ] . ( 266 sec) [ -16140.3138] [GTR parameters ] . ( 267 sec) [ -16138.7899] [Alpha ][ 0.389395] . ( 267 sec) [ -16138.7899] [Topology ] . ( 275 sec) [ -16138.1767] [Topology ] . ( 283 sec) [ -16137.7959] [Topology ] . ( 291 sec) [ -16137.5477] [Topology ] . ( 299 sec) [ -16137.3834] [Topology ] . ( 308 sec) [ -16137.2736] [Topology ] . ( 315 sec) [ -16137.1999] [Topology ] . Checking for NNIs, optimizing five branches... . ( 371 sec) [ -16137.1919] [GTR parameters ] . ( 372 sec) [ -16136.9231] [Alpha ][ 0.377080] . ( 373 sec) [ -16136.9231] [Topology ] . ( 380 sec) [ -16136.7700] [Topology ] . ( 388 sec) [ -16136.6701] [Topology ] . ( 396 sec) [ -16136.6028] [Topology ] . ( 404 sec) [ -16136.5574] [Topology ] . ( 411 sec) [ -16136.5266] [Topology ] . ( 418 sec) [ -16136.5058] [Topology ] . Checking for NNIs, optimizing five branches... . ( 474 sec) [ -16136.5034] [GTR parameters ] . ( 474 sec) [ -16136.4332] [Alpha ][ 0.370790] . ( 474 sec) [ -16136.4332] [Topology ] . ( 481 sec) [ -16136.3904] [Topology ] . ( 488 sec) [ -16136.3622] [Topology ] . ( 494 sec) [ -16136.3432] [Topology ] . ( 501 sec) [ -16136.3303] [Topology ] . ( 507 sec) [ -16136.3216] [Topology ] . ( 514 sec) [ -16136.3156] [Topology ] . Checking for NNIs, optimizing five branches... . ( 565 sec) [ -16136.3147] [GTR parameters ] . ( 565 sec) [ -16136.2980] [Alpha ][ 0.367753] . ( 565 sec) [ -16136.2980] [Topology ] . ( 572 sec) [ -16136.2865] [Topology ] . ( 578 sec) [ -16136.2790] [Topology ] . ( 585 sec) [ -16136.2739] [Topology ] . ( 592 sec) [ -16136.2704] [Topology ] . ( 598 sec) [ -16136.2681] [Topology ] . ( 605 sec) [ -16136.2665] [Topology ] . Checking for NNIs, optimizing five branches... . ( 655 sec) [ -16136.2663] [GTR parameters ] . ( 655 sec) [ -16136.2619] [Alpha ][ 0.366216] . ( 655 sec) [ -16136.2619] [Topology ] . ( 662 sec) [ -16136.2589] [Topology ] . ( 669 sec) [ -16136.2569] [Topology ] . ( 675 sec) [ -16136.2556] [Topology ] . ( 682 sec) [ -16136.2546] [Topology ] . Checking for NNIs, optimizing five branches... . ( 732 sec) [ -16136.2545] [GTR parameters ] . ( 732 sec) [ -16136.2538] [Alpha ][ 0.365592] . ( 732 sec) [ -16136.2538] [Topology ] . ( 739 sec) [ -16136.2527] [Topology ] . ( 746 sec) [ -16136.2519] [Topology ] . Checking for NNIs, optimizing five branches... . ( 795 sec) [ -16136.2519] [GTR parameters ] . ( 795 sec) [ -16136.2518] [Alpha ][ 0.365227] . ( 796 sec) [ -16136.2518] [Topology ] . ( 802 sec) [ -16136.2510] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 907 sec) [ -17118.5858] [GTR parameters ] . ( 908 sec) [ -17061.9139] [Alpha ][ 0.510962] . ( 910 sec) [ -17061.8486] [ 2501] [depth= 1] . ( 911 sec) [ -17061.5245] [ 2503] [depth= 1] . ( 914 sec) [ -17061.3940] [ 2503] [depth= 1] . ( 914 sec) [ -17055.7601] [ 2503] [depth= 1] . ( 915 sec) [ -17054.4582] [ 2504] [depth= 1] . ( 915 sec) [ -17048.2848] [ 2503] [depth= 1] . ( 916 sec) [ -17048.1573] [ 2503] [depth= 1] . ( 916 sec) [ -17012.1744] [ 2499] [depth= 2] . ( 917 sec) [ -17011.1295] [ 2500] [depth= 1] . ( 918 sec) [ -17008.9932] [ 2499] [depth= 1] . ( 919 sec) [ -17007.7526] [ 2498] [depth= 2] . ( 921 sec) [ -16997.0382] [ 2497] [depth= 1] . ( 923 sec) [ -16988.9504] [ 2496] [depth= 1] . ( 923 sec) [ -16986.8155] [ 2494] [depth= 1] . ( 925 sec) [ -16986.6340] [ 2495] [depth= 1] . ( 925 sec) [ -16984.9873] [ 2498] [depth= 1] . ( 926 sec) [ -16981.1079] [ 2498] [depth= 1] . ( 926 sec) [ -16978.1535] [ 2498] [depth= 3] . ( 926 sec) [ -16977.9780] [ 2499] [depth= 1] . ( 927 sec) [ -16975.2247] [ 2498] [depth= 1] . ( 927 sec) [ -16969.3938] [ 2497] [depth= 1] . ( 928 sec) [ -16968.6801] [ 2499] [depth= 1] . ( 928 sec) [ -16941.9979] [ 2490] [depth= 3] . ( 929 sec) [ -16940.4873] [ 2489] [depth= 1] . ( 930 sec) [ -16939.8321] [ 2488] [depth= 2] . ( 930 sec) [ -16939.6579] [ 2488] [depth= 1] . ( 931 sec) [ -16938.7979] [ 2490] [depth= 3] . ( 932 sec) [ -16938.4292] [ 2491] [depth= 1] . ( 932 sec) [ -16938.3078] [ 2490] [depth= 2] . ( 933 sec) [ -16937.3245] [ 2490] [depth= 1] . ( 933 sec) [ -16937.0116] [ 2490] [depth= 1] . ( 934 sec) [ -16936.7720] [ 2490] [depth= 1] . ( 935 sec) [ -16929.7948] [ 2492] [depth= 1] . ( 935 sec) [ -16924.2174] [ 2491] [depth= 2] . ( 937 sec) [ -16911.7561] [ 2488] [depth= 1] . ( 939 sec) [ -16907.5293] [ 2488] [depth= 1] . ( 939 sec) [ -16905.3548] [ 2488] [depth= 1] . ( 939 sec) [ -16877.3714] [ 2486] [depth= 2] . ( 940 sec) [ -16848.2452] [ 2479] [depth= 2] . ( 943 sec) [ -16847.5262] [ 2480] [depth= 2] . ( 943 sec) [ -16845.7151] [ 2478] [depth= 1] . ( 943 sec) [ -16833.2815] [ 2479] [depth= 5] . ( 944 sec) [ -16815.1570] [ 2477] [depth= 5] . ( 947 sec) [ -16814.0064] [ 2477] [depth= 1] . ( 948 sec) [ -16807.4038] [ 2478] [depth= 6] . ( 948 sec) [ -16804.1323] [ 2478] [depth= 2] . ( 948 sec) [ -16802.1090] [ 2478] [depth= 4] . ( 949 sec) [ -16793.5405] [ 2478] [depth= 1] . ( 949 sec) [ -16768.5916] [ 2483] [depth= 3] . ( 949 sec) [ -16720.6904] [ 2468] [depth= 3] . ( 950 sec) [ -16710.6190] [ 2468] [depth= 4] . ( 950 sec) [ -16664.5551] [ 2460] [depth= 10] . ( 950 sec) [ -16656.6646] [ 2460] [depth= 1] . ( 951 sec) [ -16653.7134] [ 2459] [depth= 1] . ( 951 sec) [ -16634.4284] [ 2458] [depth= 2] . ( 952 sec) [ -16633.8186] [ 2457] [depth= 1] . ( 952 sec) [ -16629.0993] [ 2457] [depth= 1] . ( 952 sec) [ -16612.3678] [ 2454] [depth= 1] . ( 953 sec) [ -16588.9138] [ 2453] [depth= 1] . ( 953 sec) [ -16587.1099] [ 2453] [depth= 1] . ( 953 sec) [ -16585.3977] [ 2451] [depth= 1] . ( 953 sec) [ -16570.3859] [ 2450] [depth= 2] . ( 954 sec) [ -16558.7194] [ 2447] [depth= 2] . ( 955 sec) [ -16551.4450] [ 2447] [depth= 1] . ( 956 sec) [ -16550.6123] [ 2448] [depth= 1] . ( 957 sec) [ -16537.2948] [ 2447] [depth= 1] . ( 957 sec) [ -16537.1023] [ 2447] [depth= 1] . ( 960 sec) [ -16536.6356] [ 2448] [depth= 5] . ( 961 sec) [ -16536.5111] [ 2445] [depth= 6] . ( 961 sec) [ -16533.1132] [ 2445] [depth= 1] . ( 962 sec) [ -16530.7956] [ 2446] [depth= 1] . ( 962 sec) [ -16527.7890] [ 2446] [depth= 1] . ( 963 sec) [ -16518.3524] [ 2444] [depth= 1] . ( 963 sec) [ -16477.2808] [ 2443] [depth= 2] . ( 964 sec) [ -16475.6929] [ 2442] [depth= 2] . ( 964 sec) [ -16444.7209] [ 2438] [depth= 3] . ( 964 sec) [ -16433.8394] [ 2438] [depth= 2] . ( 965 sec) [ -16420.0941] [ 2436] [depth= 1] . ( 966 sec) [ -16414.7122] [ 2435] [depth= 1] . ( 966 sec) [ -16414.4033] [ 2436] [depth= 1] . ( 967 sec) [ -16412.3239] [ 2435] [depth= 1] . ( 968 sec) [ -16411.8317] [ 2440] [depth= 2] . ( 970 sec) [ -16411.6088] [ 2440] [depth= 1] . ( 970 sec) [ -16386.9789] [ 2432] [depth= 11] . ( 971 sec) [ -16375.2206] [ 2430] [depth= 1] . ( 971 sec) [ -16340.5658] [ 2420] [depth= 11] . ( 972 sec) [ -16337.9436] [ 2423] [depth= 1] . ( 972 sec) [ -16336.0694] [ 2420] [depth= 1] . ( 973 sec) [ -16332.6989] [ 2420] [depth= 2] . ( 973 sec) [ -16317.8764] [ 2417] [depth= 1] . ( 974 sec) [ -16315.7141] [ 2420] [depth= 1] . ( 975 sec) [ -16311.1329] [ 2420] [depth= 1] . ( 975 sec) [ -16308.4740] [ 2419] [depth= 5] . ( 976 sec) [ -16302.2313] [ 2415] [depth= 2] . ( 980 sec) [ -16300.8847] [ 2414] [depth= 1] . ( 986 sec) [ -16300.3938] [ 2414] [depth= 5] . ( 986 sec) [ -16299.8693] [ 2415] [depth= 1] . ( 988 sec) [ -16299.8225] [ 2415] [depth= 1] . ( 988 sec) [ -16299.5804] [ 2415] [depth= 1] . ( 989 sec) [ -16299.5675] [ 2415] [depth= 1] . ( 990 sec) [ -16299.1221] [ 2415] [depth= 1] . ( 993 sec) [ -16299.1110] [ 2415] [depth= 1] . ( 993 sec) [ -16298.9413] [ 2415] [depth= 1] . ( 995 sec) [ -16298.7875] [ 2415] [depth= 1] . ( 1005 sec) [ -16298.4173] [ 2414] [depth= 2] . ( 1005 sec) [ -16297.4455] [ 2415] [depth= 3] . ( 1008 sec) [ -16295.6015] [ 2414] [depth= 1] . ( 1011 sec) [ -16293.9554] [ 2415] [depth= 1] . ( 1011 sec) [ -16293.8110] [ 2413] [depth= 3] . ( 1012 sec) [ -16293.3504] [ 2413] [depth= 1] . ( 1012 sec) [ -16293.1993] [ 2413] [depth= 1] . ( 1013 sec) [ -16292.1502] [ 2413] [depth= 2] . ( 1013 sec) [ -16291.6914] [ 2411] [depth= 1] . ( 1014 sec) [ -16291.4998] [ 2411] [depth= 3] . ( 1014 sec) [ -16286.5956] [ 2410] [depth= 1] . ( 1014 sec) [ -16285.2249] [ 2410] [depth= 1] . ( 1015 sec) [ -16284.7493] [ 2411] [depth= 1] . ( 1016 sec) [ -16284.2564] [ 2411] [depth= 8] . ( 1018 sec) [ -16283.9869] [ 2411] [depth= 1] . ( 1019 sec) [ -16283.6030] [ 2411] [depth= 3] . ( 1019 sec) [ -16283.5534] [ 2411] [depth= 2] . ( 1022 sec) [ -16282.9945] [ 2413] [depth= 1] . ( 1025 sec) [ -16282.7010] [ 2413] [depth= 1] . ( 1026 sec) [ -16282.5971] [ 2412] [depth= 2] . ( 1026 sec) [ -16282.0522] [ 2412] [depth= 1] . ( 1026 sec) [ -16281.8022] [ 2412] [depth= 1] . ( 1027 sec) [ -16281.7418] [ 2412] [depth= 2] . ( 1029 sec) [ -16281.4656] [ 2413] [depth= 1] . ( 1037 sec) [ -16281.3579] [ 2413] [depth= 1] . ( 1039 sec) [ -16120.0277] [Branch lengths ] . ( 1045 sec) [ -16117.5178] [GTR parameters ] . ( 1046 sec) [ -16117.3171] [Alpha ][ 0.528134] . ( 1049 sec) [ -16116.7830] [ 2412] [depth= 1] . ( 1054 sec) [ -16116.6175] [ 2411] [depth= 1] . ( 1063 sec) [ -16116.5757] [ 2408] [depth= 1] . ( 1066 sec) [ -16115.5897] [ 2411] [depth= 1] . ( 1067 sec) [ -16115.4180] [ 2411] [depth= 2] . ( 1072 sec) [ -16115.1206] [ 2411] [depth= 1] . ( 1072 sec) [ -16114.8013] [ 2410] [depth= 2] . ( 1073 sec) [ -16114.6590] [ 2410] [depth= 1] . ( 1073 sec) [ -16114.6324] [ 2412] [depth= 2] . ( 1074 sec) [ -16113.4557] [ 2413] [depth= 1] . ( 1084 sec) [ -16113.1497] [ 2413] [depth= 1] . ( 1088 sec) [ -16112.8715] [ 2414] [depth= 1] . ( 1100 sec) [ -16112.7857] [ 2414] [depth= 1] . ( 1102 sec) [ -16112.6531] [ 2414] [depth= 1] . ( 1112 sec) [ -16112.5534] [ 2414] [depth= 1] . ( 1112 sec) [ -16110.8717] [ 2413] [depth= 9] . ( 1115 sec) [ -16100.3139] [ 2414] [depth= 13] . ( 1124 sec) [ -16097.6759] [ 2412] [depth= 1] . ( 1128 sec) [ -16095.1643] [ 2409] [depth= 1] . ( 1147 sec) [ -16093.4681] [ 2408] [depth= 2] . ( 1158 sec) [ -16093.4250] [ 2408] [depth= 1] . ( 1161 sec) [ -16093.3742] [ 2408] [depth= 1] . ( 1176 sec) [ -16093.0488] [ 2408] [depth= 1] . ( 1176 sec) [ -16092.8752] [ 2407] [depth= 1] . ( 1185 sec) [ -16091.5530] [ 2407] [depth= 5] . ( 1186 sec) [ -16091.5119] [ 2407] [depth= 2] . ( 1194 sec) [ -16091.4425] [ 2406] [depth= 1] . ( 1194 sec) [ -16091.0760] [ 2406] [depth= 1] . ( 1202 sec) [ -16091.0628] [ 2406] [depth= 2] . ( 1212 sec) [ -16091.0346] [ 2406] [depth= 3] . ( 1213 sec) [ -16090.8085] [ 2406] [depth= 1] . ( 1216 sec) [ -16090.6981] [ 2406] [depth= 1] . ( 1218 sec) [ -16090.2993] [ 2406] [depth= 2] . ( 1221 sec) [ -16090.2692] [ 2406] [depth= 2] . ( 1228 sec) [ -16090.2045] [ 2406] [depth= 2] . ( 1231 sec) [ -16090.1847] [ 2406] [depth= 1] . ( 1234 sec) [ -16040.0961] [Branch lengths ] . ( 1238 sec) [ -16039.9837] [GTR parameters ] . ( 1239 sec) [ -16036.8921] [Alpha ][ 0.467227] . ( 1242 sec) [ -16036.7681] [ 2407] [depth= 1] . ( 1258 sec) [ -16031.8905] [ 2404] [depth= 1] . ( 1259 sec) [ -16031.4071] [ 2403] [depth= 2] . ( 1259 sec) [ -16031.3782] [ 2403] [depth= 1] . ( 1264 sec) [ -16031.1151] [ 2403] [depth= 2] . ( 1265 sec) [ -16031.0280] [ 2403] [depth= 1] . ( 1266 sec) [ -16031.0166] [ 2403] [depth= 2] . ( 1266 sec) [ -16031.0056] [ 2403] [depth= 1] . ( 1269 sec) [ -16030.2336] [ 2403] [depth= 3] . ( 1269 sec) [ -16029.6962] [ 2400] [depth= 1] . ( 1271 sec) [ -16029.4872] [ 2405] [depth= 2] . ( 1292 sec) [ -16029.4538] [ 2405] [depth= 1] . ( 1296 sec) [ -16029.2589] [ 2407] [depth= 1] . ( 1297 sec) [ -16029.1713] [ 2407] [depth= 1] . ( 1304 sec) [ -16029.0985] [ 2407] [depth= 1] . ( 1317 sec) [ -16028.8793] [ 2407] [depth= 1] . ( 1322 sec) [ -16028.8346] [ 2407] [depth= 1] . ( 1350 sec) [ -16028.8198] [ 2407] [depth= 2] . ( 1355 sec) [ -16028.8032] [ 2407] [depth= 1] . ( 1365 sec) [ -16028.7826] [ 2408] [depth= 1] . ( 1366 sec) [ -16028.5403] [ 2408] [depth= 1] . ( 1366 sec) [ -16027.8104] [ 2408] [depth= 3] . ( 1370 sec) [ -16027.6439] [ 2408] [depth= 2] . ( 1375 sec) [ -16027.6317] [ 2408] [depth= 1] . ( 1385 sec) [ -16027.6212] [ 2408] [depth= 2] . ( 1403 sec) [ -16027.4481] [ 2408] [depth= 1] . ( 1403 sec) [ -16027.2664] [ 2408] [depth= 3] . ( 1409 sec) [ -16027.2541] [ 2408] [depth= 2] . ( 1410 sec) [ -16027.2126] [ 2408] [depth= 1] . ( 1415 sec) [ -16002.9456] [Branch lengths ] . ( 1419 sec) [ -16002.7906] [GTR parameters ] . ( 1420 sec) [ -16000.4331] [Alpha ][ 0.422057] . ( 1423 sec) [ -16000.3959] [ 2407] [depth= 1] . ( 1443 sec) [ -16000.3540] [ 2407] [depth= 1] . ( 1445 sec) [ -16000.3002] [ 2407] [depth= 3] . ( 1446 sec) [ -16000.0417] [ 2408] [depth= 1] . ( 1533 sec) [ -16000.0259] [ 2408] [depth= 2] . ( 1535 sec) [ -16000.0130] [ 2408] [depth= 1] . ( 1547 sec) [ -15999.9830] [ 2408] [depth= 1] . ( 1548 sec) [ -15999.8588] [ 2408] [depth= 1] . ( 1555 sec) [ -15999.8418] [ 2408] [depth= 2] . ( 1555 sec) [ -15999.8207] [ 2408] [depth= 3] . ( 1569 sec) [ -15999.7982] [ 2409] [depth= 2] . ( 1569 sec) [ -15999.7368] [ 2408] [depth= 2] . ( 1580 sec) [ -15999.6409] [ 2408] [depth= 2] . ( 1587 sec) [ -15999.6013] [ 2408] [depth= 2] . ( 1592 sec) [ -15999.5604] [ 2408] [depth= 1] . ( 1599 sec) [ -15989.0826] [Branch lengths ] . ( 1604 sec) [ -15989.0499] [GTR parameters ] . ( 1604 sec) [ -15987.9969] [Alpha ][ 0.395290] . ( 1625 sec) [ -15987.9328] [ 2408] [depth= 2] . ( 1626 sec) [ -15987.8818] [ 2408] [depth= 1] . ( 1631 sec) [ -15987.8153] [ 2408] [depth= 2] . ( 1632 sec) [ -15987.5197] [ 2407] [depth= 2] . ( 1758 sec) [ -15987.4816] [ 2407] [depth= 2] . ( 1776 sec) [ -15987.4657] [ 2408] [depth= 6] . ( 1817 sec) [ -15981.5061] [Branch lengths ] . ( 1822 sec) [ -15981.4902] [GTR parameters ] . ( 1822 sec) [ -15980.8927] [Alpha ][ 0.376640] . ( 1843 sec) [ -15980.8238] [ 2408] [depth= 1] . ( 1849 sec) [ -15980.7971] [ 2408] [depth= 3] . ( 1905 sec) [ -15980.7581] [ 2409] [depth= 1] . ( 1963 sec) [ -15980.7039] [ 2409] [depth= 3] . ( 1971 sec) [ -15980.6883] [ 2409] [depth= 2] . ( 2012 sec) [ -15980.6701] [ 2409] [depth= 2] . ( 2034 sec) [ -15977.3202] [Branch lengths ] . ( 2035 sec) [ -15977.3140] [GTR parameters ] . ( 2036 sec) [ -15977.0609] [Alpha ][ 0.365243] . ( 2061 sec) [ -15977.0475] [ 2409] [depth= 3] . ( 2245 sec) [ -15975.2870] [Branch lengths ] . ( 2248 sec) [ -15975.2842] [GTR parameters ] . ( 2248 sec) [ -15975.1797] [Alpha ][ 0.358283] . ( 2468 sec) [ -15972.6765] [Branch lengths ] . ( 2485 sec) [ -15972.5604] [ 2408] [depth= 1] . ( 2556 sec) [ -15972.3747] [ 2407] [depth= 1] . ( 2748 sec) [ -15972.0369] [ 2407] [depth= 4] . ( 2760 sec) [ -15972.0154] [ 2407] [depth= 1] . ( 2800 sec) [ -15970.2284] [Branch lengths ] . ( 2804 sec) [ -15970.2234] [GTR parameters ] . ( 2805 sec) [ -15970.0689] [Alpha ][ 0.350001] . ( 3058 sec) [ -15970.0552] [ 2407] [depth= 1] . ( 3104 sec) [ -15969.8029] [Branch lengths ] . ( 3108 sec) [ -15969.8020] [GTR parameters ] . ( 3108 sec) [ -15969.7841] [Alpha ][ 0.347103] . ( 3108 sec) [ -15969.7841] [Topology ] . ( 3115 sec) [ -15969.7074] [Topology ] . ( 3121 sec) [ -15969.6648] [Topology ] . ( 3128 sec) [ -15969.6366] [Topology ] . ( 3134 sec) [ -15969.6176] [Topology ] . ( 3141 sec) [ -15969.6046] [Topology ] . ( 3147 sec) [ -15969.5957] [Topology ] . ( 3149 sec) [ -15969.5950] [GTR parameters ] . ( 3150 sec) [ -15969.5740] [Alpha ][ 0.344014] . ( 3150 sec) [ -15969.5740] [Topology ] . ( 3157 sec) [ -15969.5590] [Topology ] . ( 3163 sec) [ -15969.5490] [Topology ] . ( 3170 sec) [ -15969.5422] [Topology ] . ( 3176 sec) [ -15969.5374] [Topology ] . ( 3183 sec) [ -15969.5341] [Topology ] . ( 3189 sec) [ -15969.5318] [Topology ] . ( 3192 sec) [ -15969.5314] [GTR parameters ] . ( 3192 sec) [ -15969.5264] [Alpha ][ 0.342506] . ( 3193 sec) [ -15969.5264] [Topology ] . ( 3199 sec) [ -15969.5226] [Topology ] . ( 3206 sec) [ -15969.5200] [Topology ] . ( 3212 sec) [ -15969.5182] [Topology ] . ( 3219 sec) [ -15969.5169] [Topology ] . ( 3225 sec) [ -15969.5160] [Topology ] . ( 3226 sec) [ -15969.5159] [GTR parameters ] . ( 3227 sec) [ -15969.5150] [Alpha ][ 0.341829] . ( 3227 sec) [ -15969.5150] [Topology ] . ( 3234 sec) [ -15969.5138] [Topology ] . ( 3240 sec) [ -15969.5129] [Topology ] . ( 3241 sec) [ -15969.5129] [GTR parameters ] . ( 3242 sec) [ -15969.5129] [Alpha ][ 0.341487] . ( 3242 sec) [ -15969.5129] [Topology ] . ( 3249 sec) [ -15969.5121] [Topology ] . ( 3250 sec) [ -15969.5121] [GTR parameters ] . ( 3250 sec) [ -15969.5121] [Alpha ][ 0.341487] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -16136.251048 . Log likelihood obtained after SPR moves : -15969.512094 . Log likelihood of the current tree: -15969.512094. . Printing the most likely tree in file 'nucleic_M2587_117x1910_2006.phy_phyml_tree.txt'... . Best log likelihood : -15969.412325 . Time used 0h54m59s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 15271.72user 0.00system 4:18:47elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps