.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : nucleic_M2623_139x1044_2006.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : yes . Number of random starting trees : 5 . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 959 patterns found. (out of a total of 1044 sites) . 202 sites without polymorphism (19.35%). . [Random start 1/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . This analysis requires at least 71Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 5 sec) [ -90458.1036] [GTR parameters ] . ( 6 sec) [ -88362.3987] [Alpha ][ 0.500960] . ( 6 sec) [ -87886.6268] [20894] [depth= 14] . ( 7 sec) [ -87675.8568] [20869] [depth= 15] . ( 7 sec) [ -87331.0551] [20819] [depth= 14] . ( 7 sec) [ -87091.3182] [20746] [depth= 1] . ( 8 sec) [ -86725.6302] [20647] [depth= 11] . ( 8 sec) [ -86578.3569] [20618] [depth= 2] . ( 8 sec) [ -86554.2384] [20603] [depth= 12] . ( 8 sec) [ -86518.5083] [20585] [depth= 1] . ( 9 sec) [ -86416.7754] [20557] [depth= 5] . ( 9 sec) [ -86415.1739] [20561] [depth= 1] . ( 9 sec) [ -86403.3130] [20548] [depth= 10] . ( 10 sec) [ -85933.1285] [20457] [depth= 3] . ( 10 sec) [ -85888.5032] [20447] [depth= 2] . ( 10 sec) [ -85859.2771] [20439] [depth= 5] . ( 10 sec) [ -85852.2159] [20417] [depth= 6] . ( 11 sec) [ -85276.7232] [20369] [depth= 6] . ( 11 sec) [ -85172.2448] [20335] [depth= 10] . ( 11 sec) [ -85099.7145] [20327] [depth= 3] . ( 12 sec) [ -84979.7668] [20293] [depth= 14] . ( 12 sec) [ -84728.1983] [20293] [depth= 2] . ( 12 sec) [ -84458.5861] [20194] [depth= 10] . ( 13 sec) [ -84448.0326] [20193] [depth= 1] . ( 13 sec) [ -84378.2136] [20185] [depth= 7] . ( 13 sec) [ -84290.7717] [20144] [depth= 15] . ( 14 sec) [ -83771.6862] [20125] [depth= 4] . ( 14 sec) [ -83653.2367] [20113] [depth= 10] . ( 14 sec) [ -83564.2490] [20098] [depth= 10] . ( 15 sec) [ -83395.9003] [20003] [depth= 17] . ( 15 sec) [ -83202.3688] [19946] [depth= 4] . ( 15 sec) [ -82996.5716] [19915] [depth= 8] . ( 16 sec) [ -82889.6901] [19865] [depth= 15] . ( 16 sec) [ -82854.9742] [19854] [depth= 1] . ( 16 sec) [ -82679.3686] [19776] [depth= 8] . ( 16 sec) [ -82671.9349] [19776] [depth= 1] . ( 17 sec) [ -82498.8754] [19747] [depth= 2] . ( 17 sec) [ -82321.9567] [19718] [depth= 9] . ( 17 sec) [ -82274.9717] [19715] [depth= 1] . ( 18 sec) [ -82240.0507] [19718] [depth= 1] . ( 18 sec) [ -82127.3512] [19633] [depth= 5] . ( 18 sec) [ -82052.5825] [19605] [depth= 4] . ( 19 sec) [ -81980.2910] [19606] [depth= 1] . ( 19 sec) [ -81148.5343] [19492] [depth= 21] . ( 19 sec) [ -78967.2151] [19311] [depth= 9] . ( 20 sec) [ -78930.3446] [19294] [depth= 2] . ( 20 sec) [ -77958.4767] [19139] [depth= 13] . ( 21 sec) [ -77653.5280] [19122] [depth= 5] . ( 21 sec) [ -77501.7361] [18962] [depth= 22] . ( 21 sec) [ -77429.6507] [18957] [depth= 1] . ( 22 sec) [ -76985.9643] [18998] [depth= 1] . ( 22 sec) [ -76777.9168] [18925] [depth= 8] . ( 22 sec) [ -76615.8813] [18897] [depth= 1] . ( 23 sec) [ -76471.5658] [18842] [depth= 18] . ( 23 sec) [ -76469.0361] [18851] [depth= 15] . ( 23 sec) [ -76363.2904] [18820] [depth= 1] . ( 24 sec) [ -76226.3073] [18785] [depth= 13] . ( 24 sec) [ -76104.2535] [18748] [depth= 3] . ( 24 sec) [ -75968.0960] [18713] [depth= 5] . ( 24 sec) [ -75790.7854] [18682] [depth= 6] . ( 25 sec) [ -75712.9432] [18650] [depth= 3] . ( 25 sec) [ -75711.2552] [18652] [depth= 1] . ( 25 sec) [ -75669.3065] [18634] [depth= 10] . ( 26 sec) [ -75635.0379] [18635] [depth= 1] . ( 26 sec) [ -75470.4847] [18617] [depth= 4] . ( 26 sec) [ -75321.6450] [18513] [depth= 14] . ( 26 sec) [ -75123.5941] [18489] [depth= 4] . ( 27 sec) [ -75068.0832] [18451] [depth= 23] . ( 27 sec) [ -74895.5748] [18407] [depth= 4] . ( 27 sec) [ -74736.3213] [18364] [depth= 1] . ( 27 sec) [ -74699.8676] [18343] [depth= 2] . ( 28 sec) [ -74133.7663] [18177] [depth= 2] . ( 28 sec) [ -74082.9664] [18131] [depth= 1] . ( 29 sec) [ -74025.9096] [18117] [depth= 22] . ( 29 sec) [ -73996.6759] [18071] [depth= 4] . ( 29 sec) [ -73630.0156] [18032] [depth= 1] . ( 30 sec) [ -73230.8918] [17951] [depth= 10] . ( 30 sec) [ -72595.1815] [17917] [depth= 15] . ( 30 sec) [ -72381.2021] [17923] [depth= 21] . ( 31 sec) [ -72061.3900] [17874] [depth= 11] . ( 31 sec) [ -71802.1095] [17851] [depth= 4] . ( 31 sec) [ -71340.6684] [17817] [depth= 1] . ( 31 sec) [ -71261.3233] [17822] [depth= 1] . ( 32 sec) [ -71155.0177] [17778] [depth= 3] . ( 32 sec) [ -71064.8234] [17738] [depth= 1] . ( 32 sec) [ -71019.4466] [17727] [depth= 1] . ( 33 sec) [ -70871.9328] [17697] [depth= 27] . ( 33 sec) [ -70844.0256] [17679] [depth= 1] . ( 33 sec) [ -70836.2864] [17658] [depth= 7] . ( 34 sec) [ -70250.9342] [17426] [depth= 22] . ( 34 sec) [ -70057.0973] [17391] [depth= 26] . ( 35 sec) [ -70052.1799] [17392] [depth= 1] . ( 35 sec) [ -69619.0533] [17350] [depth= 12] . ( 35 sec) [ -68918.5294] [17273] [depth= 14] . ( 36 sec) [ -68906.7463] [17270] [depth= 3] . ( 36 sec) [ -68889.3878] [17247] [depth= 1] . ( 37 sec) [ -68773.2645] [17232] [depth= 1] . ( 37 sec) [ -68748.0937] [17226] [depth= 5] . ( 37 sec) [ -68474.9245] [17165] [depth= 20] . ( 38 sec) [ -68434.4191] [17147] [depth= 1] . ( 38 sec) [ -68405.8891] [17161] [depth= 1] . ( 38 sec) [ -68353.0752] [17142] [depth= 9] . ( 39 sec) [ -68211.2255] [17082] [depth= 4] . ( 39 sec) [ -67870.3267] [16977] [depth= 14] . ( 39 sec) [ -67848.1707] [16967] [depth= 12] . ( 40 sec) [ -67832.7038] [16969] [depth= 1] . ( 40 sec) [ -67481.6121] [16974] [depth= 18] . ( 40 sec) [ -67394.6389] [16959] [depth= 2] . ( 41 sec) [ -67331.2777] [16939] [depth= 1] . ( 41 sec) [ -67189.9407] [16858] [depth= 16] . ( 41 sec) [ -67144.9575] [16807] [depth= 7] . ( 42 sec) [ -67116.2840] [16822] [depth= 1] . ( 42 sec) [ -66982.3015] [16765] [depth= 14] . ( 42 sec) [ -66758.1838] [16739] [depth= 18] . ( 43 sec) [ -66674.9100] [16746] [depth= 21] . ( 43 sec) [ -66667.2553] [16765] [depth= 1] . ( 43 sec) [ -66523.1816] [16728] [depth= 8] . ( 44 sec) [ -66450.0483] [16726] [depth= 1] . ( 44 sec) [ -66328.1951] [16689] [depth= 3] . ( 44 sec) [ -66324.3678] [16687] [depth= 1] . ( 45 sec) [ -66055.1318] [16566] [depth= 26] . ( 45 sec) [ -65697.8952] [16479] [depth= 31] . ( 45 sec) [ -65601.8144] [16485] [depth= 4] . ( 46 sec) [ -65467.7602] [16419] [depth= 18] . ( 46 sec) [ -65314.6794] [16426] [depth= 1] . ( 46 sec) [ -65140.3142] [16339] [depth= 23] . ( 47 sec) [ -65102.2470] [16342] [depth= 1] . ( 47 sec) [ -65041.1926] [16337] [depth= 1] . ( 48 sec) [ -64946.5279] [16315] [depth= 2] . ( 48 sec) [ -64517.6859] [16298] [depth= 15] . ( 49 sec) [ -64448.8443] [16301] [depth= 21] . ( 49 sec) [ -64430.3658] [16287] [depth= 1] . ( 50 sec) [ -64252.7135] [16229] [depth= 9] . ( 50 sec) [ -64124.2197] [16210] [depth= 4] . ( 50 sec) [ -64104.4182] [16210] [depth= 6] . ( 50 sec) [ -64031.1196] [16201] [depth= 7] . ( 51 sec) [ -63942.5616] [16162] [depth= 3] . ( 51 sec) [ -63931.9458] [16158] [depth= 10] . ( 51 sec) [ -63909.8435] [16164] [depth= 1] . ( 52 sec) [ -63865.6392] [16178] [depth= 1] . ( 52 sec) [ -63850.3873] [16142] [depth= 25] . ( 53 sec) [ -63842.2398] [16142] [depth= 1] . ( 53 sec) [ -63792.1024] [16142] [depth= 1] . ( 53 sec) [ -63761.9528] [16132] [depth= 13] . ( 54 sec) [ -63483.7013] [16041] [depth= 16] . ( 54 sec) [ -62683.5528] [15719] [depth= 21] . ( 54 sec) [ -62642.9395] [15696] [depth= 3] . ( 54 sec) [ -62541.9008] [15671] [depth= 17] . ( 55 sec) [ -62407.7949] [15625] [depth= 17] . ( 55 sec) [ -62328.6061] [15557] [depth= 22] . ( 55 sec) [ -62299.8461] [15539] [depth= 2] . ( 56 sec) [ -62160.6620] [15516] [depth= 10] . ( 56 sec) [ -62100.1702] [15500] [depth= 1] . ( 56 sec) [ -62047.0063] [15480] [depth= 8] . ( 57 sec) [ -62019.1999] [15476] [depth= 2] . ( 57 sec) [ -61867.8545] [15426] [depth= 2] . ( 57 sec) [ -61866.2684] [15477] [depth= 1] . ( 58 sec) [ -61842.8783] [15437] [depth= 17] . ( 58 sec) [ -61822.9785] [15386] [depth= 1] . ( 59 sec) [ -61792.7201] [15388] [depth= 1] . ( 59 sec) [ -61755.8195] [15372] [depth= 1] . ( 59 sec) [ -61643.9178] [15356] [depth= 16] . ( 60 sec) [ -61642.5139] [15360] [depth= 2] . ( 60 sec) [ -61629.0936] [15369] [depth= 1] . ( 60 sec) [ -61623.7303] [15374] [depth= 1] . ( 61 sec) [ -61576.2826] [15388] [depth= 1] . ( 61 sec) [ -61553.5497] [15366] [depth= 1] . ( 61 sec) [ -61421.3239] [15334] [depth= 11] . ( 62 sec) [ -60862.0310] [15317] [depth= 4] . ( 62 sec) [ -60670.2338] [15299] [depth= 1] . ( 62 sec) [ -60333.0154] [15153] [depth= 3] . ( 62 sec) [ -60151.8798] [15129] [depth= 11] . ( 63 sec) [ -59949.4905] [15068] [depth= 4] . ( 63 sec) [ -59726.1393] [15012] [depth= 17] . ( 63 sec) [ -59113.5410] [14957] [depth= 1] . ( 64 sec) [ -58565.6981] [14833] [depth= 6] . ( 64 sec) [ -58496.2916] [14845] [depth= 1] . ( 64 sec) [ -58424.3282] [14806] [depth= 4] . ( 65 sec) [ -58336.4312] [14775] [depth= 5] . ( 65 sec) [ -58330.6669] [14773] [depth= 1] . ( 65 sec) [ -58329.9819] [14761] [depth= 1] . ( 66 sec) [ -58167.0214] [14738] [depth= 2] . ( 66 sec) [ -58061.8768] [14697] [depth= 14] . ( 66 sec) [ -57863.5891] [14641] [depth= 2] . ( 67 sec) [ -57860.5833] [14646] [depth= 1] . ( 67 sec) [ -57732.7287] [14592] [depth= 7] . ( 67 sec) [ -57718.0457] [14560] [depth= 2] . ( 68 sec) [ -57695.6758] [14526] [depth= 6] . ( 68 sec) [ -57431.9284] [14426] [depth= 11] . ( 68 sec) [ -57353.6886] [14414] [depth= 3] . ( 68 sec) [ -57305.4091] [14408] [depth= 1] . ( 69 sec) [ -57275.1841] [14410] [depth= 5] . ( 69 sec) [ -57264.9100] [14408] [depth= 1] . ( 70 sec) [ -57184.8158] [14361] [depth= 3] . ( 70 sec) [ -57124.5653] [14340] [depth= 8] . ( 71 sec) [ -57065.3838] [14330] [depth= 2] . ( 71 sec) [ -56893.8822] [14260] [depth= 8] . ( 71 sec) [ -56681.1733] [14257] [depth= 1] . ( 71 sec) [ -56473.9476] [14158] [depth= 19] . ( 72 sec) [ -56301.9628] [14132] [depth= 11] . ( 72 sec) [ -56283.8489] [14110] [depth= 1] . ( 72 sec) [ -56222.8300] [14076] [depth= 16] . ( 73 sec) [ -56154.0296] [13999] [depth= 1] . ( 73 sec) [ -56035.9929] [13945] [depth= 7] . ( 73 sec) [ -55969.8444] [13941] [depth= 19] . ( 74 sec) [ -55955.3622] [13941] [depth= 2] . ( 74 sec) [ -55568.0231] [13915] [depth= 15] . ( 74 sec) [ -55164.1984] [13806] [depth= 2] . ( 75 sec) [ -54852.4128] [13804] [depth= 12] . ( 75 sec) [ -54463.7675] [13767] [depth= 12] . ( 75 sec) [ -54180.0613] [13780] [depth= 10] . ( 76 sec) [ -53901.7167] [13702] [depth= 10] . ( 76 sec) [ -53790.2533] [13638] [depth= 2] . ( 76 sec) [ -53647.5375] [13598] [depth= 11] . ( 76 sec) [ -53636.5495] [13607] [depth= 3] . ( 77 sec) [ -53632.3830] [13611] [depth= 2] . ( 77 sec) [ -53624.5751] [13634] [depth= 2] . ( 78 sec) [ -53607.7205] [13636] [depth= 3] . ( 78 sec) [ -53564.8341] [13629] [depth= 10] . ( 79 sec) [ -53559.1598] [13631] [depth= 1] . ( 79 sec) [ -53528.8238] [13626] [depth= 4] . ( 79 sec) [ -53400.3213] [13605] [depth= 9] . ( 80 sec) [ -53370.0574] [13548] [depth= 11] . ( 80 sec) [ -53131.9694] [13452] [depth= 9] . ( 80 sec) [ -53016.7383] [13390] [depth= 11] . ( 81 sec) [ -52891.1145] [13358] [depth= 10] . ( 81 sec) [ -52888.0290] [13356] [depth= 1] . ( 81 sec) [ -52851.9239] [13370] [depth= 1] . ( 82 sec) [ -52561.8366] [13278] [depth= 10] . ( 82 sec) [ -52559.2799] [13278] [depth= 1] . ( 82 sec) [ -52550.6307] [13198] [depth= 8] . ( 82 sec) [ -52523.4449] [13192] [depth= 1] . ( 83 sec) [ -52504.6748] [13188] [depth= 2] . ( 83 sec) [ -52438.6236] [13180] [depth= 1] . ( 84 sec) [ -52431.2666] [13180] [depth= 3] . ( 84 sec) [ -52345.7186] [13140] [depth= 7] . ( 84 sec) [ -52163.2611] [13143] [depth= 1] . ( 84 sec) [ -52070.9211] [13116] [depth= 5] . ( 85 sec) [ -52058.1474] [13112] [depth= 1] . ( 85 sec) [ -51997.0388] [13100] [depth= 1] . ( 85 sec) [ -51953.8278] [13084] [depth= 2] . ( 86 sec) [ -51943.6355] [13084] [depth= 1] . ( 86 sec) [ -51782.0311] [13035] [depth= 14] . ( 86 sec) [ -51675.4189] [13016] [depth= 2] . ( 87 sec) [ -51638.4372] [12991] [depth= 1] . ( 87 sec) [ -51627.7990] [12990] [depth= 2] . ( 87 sec) [ -51620.2476] [12977] [depth= 2] . ( 88 sec) [ -51481.4188] [12951] [depth= 1] . ( 88 sec) [ -51337.5296] [12873] [depth= 8] . ( 88 sec) [ -51151.7160] [12815] [depth= 2] . ( 89 sec) [ -51063.0586] [12779] [depth= 16] . ( 89 sec) [ -50806.7656] [12722] [depth= 2] . ( 90 sec) [ -50791.4076] [12715] [depth= 2] . ( 90 sec) [ -50756.0939] [12715] [depth= 1] . ( 90 sec) [ -50731.9511] [12710] [depth= 1] . ( 91 sec) [ -50722.8633] [12703] [depth= 2] . ( 91 sec) [ -50668.4028] [12694] [depth= 1] . ( 91 sec) [ -50634.6096] [12679] [depth= 1] . ( 91 sec) [ -50542.0446] [12622] [depth= 3] . ( 92 sec) [ -50517.5903] [12616] [depth= 3] . ( 92 sec) [ -50512.8522] [12615] [depth= 1] . ( 93 sec) [ -50511.6464] [12617] [depth= 1] . ( 93 sec) [ -50455.8736] [12605] [depth= 17] . ( 93 sec) [ -50446.2109] [12595] [depth= 2] . ( 93 sec) [ -50421.9529] [12597] [depth= 2] . ( 94 sec) [ -50415.8153] [12600] [depth= 1] . ( 94 sec) [ -50412.2695] [12589] [depth= 2] . ( 94 sec) [ -50397.2387] [12576] [depth= 3] . ( 95 sec) [ -50083.8865] [12496] [depth= 16] . ( 95 sec) [ -49918.8902] [12412] [depth= 13] . ( 95 sec) [ -49906.7500] [12410] [depth= 1] . ( 95 sec) [ -49888.1134] [12404] [depth= 1] . ( 96 sec) [ -49871.6135] [12394] [depth= 1] . ( 96 sec) [ -49862.2336] [12393] [depth= 5] . ( 96 sec) [ -49851.7133] [12387] [depth= 2] . ( 97 sec) [ -49845.3723] [12385] [depth= 6] . ( 97 sec) [ -49839.8147] [12389] [depth= 1] . ( 97 sec) [ -49839.0087] [12385] [depth= 1] . ( 98 sec) [ -49747.3624] [12362] [depth= 9] . ( 98 sec) [ -49741.1129] [12365] [depth= 1] . ( 98 sec) [ -49700.0051] [12357] [depth= 11] . ( 99 sec) [ -49651.3046] [12349] [depth= 4] . ( 100 sec) [ -49639.8675] [12338] [depth= 11] . ( 100 sec) [ -49629.7026] [12333] [depth= 3] . ( 100 sec) [ -49625.8909] [12327] [depth= 3] . ( 101 sec) [ -49492.4521] [12279] [depth= 3] . ( 101 sec) [ -49487.7126] [12274] [depth= 4] . ( 102 sec) [ -49412.9625] [12246] [depth= 4] . ( 102 sec) [ -49384.0879] [12246] [depth= 1] . ( 102 sec) [ -49378.8928] [12236] [depth= 8] . ( 103 sec) [ -49378.6798] [12236] [depth= 1] . ( 103 sec) [ -49378.0433] [12235] [depth= 1] . ( 103 sec) [ -49342.9347] [12218] [depth= 2] . ( 103 sec) [ -49341.5661] [12213] [depth= 3] . ( 104 sec) [ -49327.7710] [12202] [depth= 1] . ( 104 sec) [ -49275.6644] [12190] [depth= 4] . ( 105 sec) [ -49241.1426] [12170] [depth= 9] . ( 105 sec) [ -49207.0817] [12154] [depth= 1] . ( 105 sec) [ -49199.3120] [12156] [depth= 1] . ( 106 sec) [ -49154.6510] [12142] [depth= 1] . ( 106 sec) [ -49139.8248] [12131] [depth= 5] . ( 106 sec) [ -49130.4435] [12126] [depth= 1] . ( 107 sec) [ -48619.9220] [12120] [depth= 1] . ( 107 sec) [ -48563.5167] [12075] [depth= 11] . ( 108 sec) [ -48522.0736] [12061] [depth= 1] . ( 110 sec) [ -47487.4881] [Branch lengths ] . ( 124 sec) [ -47001.5565] [GTR parameters ] . ( 124 sec) [ -47001.3198] [Alpha ][ 0.491452] . ( 125 sec) [ -46997.9098] [12057] [depth= 1] . ( 125 sec) [ -46996.2715] [12057] [depth= 1] . ( 126 sec) [ -46994.4564] [12054] [depth= 3] . ( 126 sec) [ -46979.1074] [12044] [depth= 2] . ( 126 sec) [ -46978.1005] [12042] [depth= 1] . ( 127 sec) [ -46954.8168] [12066] [depth= 1] . ( 127 sec) [ -46927.6208] [12042] [depth= 1] . ( 128 sec) [ -46922.7416] [12044] [depth= 1] . ( 128 sec) [ -46917.9189] [12045] [depth= 1] . ( 129 sec) [ -46917.7413] [12047] [depth= 1] . ( 129 sec) [ -46916.2487] [12040] [depth= 3] . ( 129 sec) [ -46913.9307] [12037] [depth= 2] . ( 130 sec) [ -46913.8803] [12038] [depth= 2] . ( 130 sec) [ -46912.6024] [12034] [depth= 3] . ( 131 sec) [ -46911.9778] [12039] [depth= 1] . ( 131 sec) [ -46823.3759] [12043] [depth= 1] . ( 132 sec) [ -46822.0395] [12039] [depth= 1] . ( 132 sec) [ -46821.1377] [12038] [depth= 1] . ( 133 sec) [ -46818.5502] [12035] [depth= 1] . ( 133 sec) [ -46818.2098] [12035] [depth= 1] . ( 134 sec) [ -46809.7419] [12035] [depth= 1] . ( 135 sec) [ -46801.1876] [12030] [depth= 1] . ( 135 sec) [ -46794.9396] [12018] [depth= 2] . ( 136 sec) [ -46779.5529] [11991] [depth= 3] . ( 136 sec) [ -46772.2944] [11992] [depth= 2] . ( 137 sec) [ -46727.3516] [11977] [depth= 7] . ( 138 sec) [ -46685.2995] [11962] [depth= 2] . ( 138 sec) [ -46683.0991] [11964] [depth= 4] . ( 139 sec) [ -46678.1176] [11962] [depth= 1] . ( 139 sec) [ -46677.6924] [11956] [depth= 1] . ( 139 sec) [ -46667.4175] [11913] [depth= 13] . ( 140 sec) [ -46666.8221] [11912] [depth= 1] . ( 140 sec) [ -46664.7370] [11915] [depth= 1] . ( 141 sec) [ -46663.2966] [11910] [depth= 5] . ( 141 sec) [ -46662.2285] [11903] [depth= 3] . ( 142 sec) [ -46654.7534] [11906] [depth= 3] . ( 142 sec) [ -46643.7472] [11901] [depth= 5] . ( 143 sec) [ -46639.4681] [11894] [depth= 1] . ( 143 sec) [ -46628.7455] [11882] [depth= 2] . ( 143 sec) [ -46622.3025] [11884] [depth= 2] . ( 145 sec) [ -46621.5385] [11885] [depth= 1] . ( 146 sec) [ -46620.1500] [11894] [depth= 1] . ( 147 sec) [ -46594.4807] [11887] [depth= 2] . ( 148 sec) [ -46590.8303] [11882] [depth= 1] . ( 149 sec) [ -46584.2913] [11879] [depth= 1] . ( 149 sec) [ -46583.9116] [11879] [depth= 1] . ( 150 sec) [ -46583.7267] [11877] [depth= 2] . ( 151 sec) [ -46582.5852] [11875] [depth= 1] . ( 151 sec) [ -46581.9002] [11874] [depth= 1] . ( 151 sec) [ -46572.1332] [11871] [depth= 1] . ( 152 sec) [ -46566.9794] [11876] [depth= 1] . ( 153 sec) [ -46565.0657] [11872] [depth= 1] . ( 154 sec) [ -46564.1385] [11874] [depth= 2] . ( 154 sec) [ -46563.6486] [11873] [depth= 1] . ( 155 sec) [ -46518.7451] [11827] [depth= 15] . ( 155 sec) [ -46518.1872] [11830] [depth= 1] . ( 155 sec) [ -46490.9200] [11821] [depth= 7] . ( 156 sec) [ -46459.7141] [11809] [depth= 1] . ( 157 sec) [ -46448.8116] [11804] [depth= 3] . ( 158 sec) [ -46447.2973] [11804] [depth= 1] . ( 159 sec) [ -46444.8949] [11804] [depth= 1] . ( 160 sec) [ -46443.4061] [11799] [depth= 1] . ( 160 sec) [ -46443.3279] [11802] [depth= 1] . ( 163 sec) [ -46440.5128] [11796] [depth= 1] . ( 163 sec) [ -46423.7666] [11788] [depth= 1] . ( 166 sec) [ -46423.7201] [11788] [depth= 1] . ( 167 sec) [ -46421.0219] [11784] [depth= 1] . ( 168 sec) [ -46421.0118] [11784] [depth= 1] . ( 169 sec) [ -46418.8246] [11784] [depth= 1] . ( 170 sec) [ -46417.1736] [11788] [depth= 1] . ( 171 sec) [ -46417.0737] [11789] [depth= 1] . ( 171 sec) [ -46416.2650] [11789] [depth= 2] . ( 172 sec) [ -46406.6157] [11789] [depth= 1] . ( 172 sec) [ -46406.6042] [11789] [depth= 1] . ( 172 sec) [ -46400.1242] [11798] [depth= 1] . ( 173 sec) [ -46389.7385] [11794] [depth= 1] . ( 173 sec) [ -46381.7205] [11786] [depth= 4] . ( 173 sec) [ -46377.1698] [11786] [depth= 1] . ( 174 sec) [ -46376.7690] [11783] [depth= 1] . ( 176 sec) [ -46372.8035] [11763] [depth= 1] . ( 177 sec) [ -46371.4905] [11763] [depth= 1] . ( 177 sec) [ -46371.3039] [11762] [depth= 1] . ( 179 sec) [ -46370.0033] [11762] [depth= 1] . ( 180 sec) [ -46369.5339] [11761] [depth= 1] . ( 181 sec) [ -46368.7391] [11762] [depth= 1] . ( 181 sec) [ -46368.3624] [11764] [depth= 1] . ( 185 sec) [ -46367.3497] [11769] [depth= 1] . ( 186 sec) [ -46358.0366] [11761] [depth= 2] . ( 186 sec) [ -46349.6791] [11769] [depth= 1] . ( 186 sec) [ -46349.3239] [11767] [depth= 1] . ( 187 sec) [ -46324.7565] [11765] [depth= 1] . ( 187 sec) [ -46311.9681] [11768] [depth= 6] . ( 187 sec) [ -46310.7836] [11769] [depth= 1] . ( 188 sec) [ -46309.7632] [11769] [depth= 2] . ( 189 sec) [ -46309.1812] [11770] [depth= 1] . ( 189 sec) [ -46279.5932] [11753] [depth= 8] . ( 190 sec) [ -46258.4018] [11746] [depth= 2] . ( 190 sec) [ -46258.2495] [11746] [depth= 1] . ( 191 sec) [ -46257.7408] [11745] [depth= 1] . ( 192 sec) [ -46245.8274] [11743] [depth= 1] . ( 192 sec) [ -46243.5142] [11737] [depth= 7] . ( 193 sec) [ -46242.2032] [11738] [depth= 1] . ( 194 sec) [ -46241.9470] [11742] [depth= 2] . ( 194 sec) [ -46238.6555] [11744] [depth= 1] . ( 195 sec) [ -46237.3932] [11743] [depth= 1] . ( 195 sec) [ -46237.3632] [11744] [depth= 2] . ( 196 sec) [ -46235.9560] [11746] [depth= 1] . ( 198 sec) [ -46093.1724] [Branch lengths ] . ( 208 sec) [ -46088.7522] [GTR parameters ] . ( 209 sec) [ -46085.6082] [Alpha ][ 0.522475] . ( 211 sec) [ -46085.5773] [11748] [depth= 1] . ( 212 sec) [ -46084.8334] [11753] [depth= 1] . ( 212 sec) [ -46079.4871] [11758] [depth= 1] . ( 213 sec) [ -46078.4556] [11758] [depth= 1] . ( 213 sec) [ -46078.0634] [11758] [depth= 1] . ( 214 sec) [ -46076.7727] [11759] [depth= 1] . ( 216 sec) [ -46076.5962] [11757] [depth= 1] . ( 218 sec) [ -46076.3508] [11762] [depth= 2] . ( 220 sec) [ -46072.1241] [11759] [depth= 5] . ( 220 sec) [ -46064.2483] [11757] [depth= 1] . ( 224 sec) [ -46063.9897] [11759] [depth= 1] . ( 225 sec) [ -46057.5900] [11755] [depth= 1] . ( 226 sec) [ -46057.5428] [11754] [depth= 2] . ( 227 sec) [ -46057.5208] [11753] [depth= 2] . ( 228 sec) [ -46057.0036] [11757] [depth= 1] . ( 231 sec) [ -46056.8965] [11755] [depth= 1] . ( 238 sec) [ -46056.8663] [11758] [depth= 1] . ( 238 sec) [ -46048.3772] [11753] [depth= 6] . ( 239 sec) [ -46047.6394] [11753] [depth= 1] . ( 240 sec) [ -46026.2587] [11766] [depth= 1] . ( 240 sec) [ -46026.2276] [11763] [depth= 1] . ( 241 sec) [ -46026.1537] [11760] [depth= 1] . ( 243 sec) [ -46024.6907] [11759] [depth= 1] . ( 244 sec) [ -46024.6221] [11763] [depth= 1] . ( 246 sec) [ -46024.0200] [11765] [depth= 1] . ( 250 sec) [ -46023.6278] [11768] [depth= 1] . ( 254 sec) [ -46020.9692] [11767] [depth= 4] . ( 255 sec) [ -46020.8123] [11767] [depth= 1] . ( 255 sec) [ -46020.1055] [11751] [depth= 1] . ( 256 sec) [ -46019.4223] [11756] [depth= 3] . ( 256 sec) [ -46019.3311] [11756] [depth= 1] . ( 258 sec) [ -46018.4359] [11753] [depth= 1] . ( 259 sec) [ -46015.1518] [11758] [depth= 1] . ( 259 sec) [ -46006.1661] [11763] [depth= 1] . ( 261 sec) [ -46002.2481] [11795] [depth= 1] . ( 262 sec) [ -46000.8850] [11787] [depth= 1] . ( 263 sec) [ -46000.4158] [11787] [depth= 1] . ( 264 sec) [ -45998.8062] [11789] [depth= 1] . ( 267 sec) [ -45998.7697] [11789] [depth= 1] . ( 270 sec) [ -45998.4020] [11785] [depth= 1] . ( 271 sec) [ -45997.2659] [11784] [depth= 1] . ( 273 sec) [ -45997.2198] [11784] [depth= 1] . ( 279 sec) [ -45996.5229] [11783] [depth= 3] . ( 279 sec) [ -45996.4241] [11780] [depth= 1] . ( 281 sec) [ -45994.4109] [11783] [depth= 1] . ( 285 sec) [ -45943.6706] [Branch lengths ] . ( 297 sec) [ -45942.9457] [GTR parameters ] . ( 297 sec) [ -45942.8454] [Alpha ][ 0.528119] . ( 299 sec) [ -45942.2609] [11783] [depth= 3] . ( 302 sec) [ -45942.0721] [11785] [depth= 1] . ( 306 sec) [ -45941.9373] [11787] [depth= 2] . ( 307 sec) [ -45941.9117] [11786] [depth= 2] . ( 308 sec) [ -45941.6928] [11787] [depth= 1] . ( 313 sec) [ -45941.6636] [11787] [depth= 1] . ( 315 sec) [ -45925.8820] [11813] [depth= 1] . ( 330 sec) [ -45925.6847] [11813] [depth= 1] . ( 331 sec) [ -45924.4758] [11818] [depth= 3] . ( 331 sec) [ -45924.2963] [11818] [depth= 2] . ( 334 sec) [ -45924.0643] [11818] [depth= 1] . ( 343 sec) [ -45923.9804] [11818] [depth= 3] . ( 345 sec) [ -45922.8153] [11822] [depth= 1] . ( 366 sec) [ -45922.4655] [11823] [depth= 1] . ( 378 sec) [ -45920.5561] [11813] [depth= 1] . ( 383 sec) [ -45899.9541] [Branch lengths ] . ( 386 sec) [ -45899.6331] [GTR parameters ] . ( 387 sec) [ -45899.5946] [Alpha ][ 0.531502] . ( 392 sec) [ -45899.4670] [11813] [depth= 1] . ( 400 sec) [ -45899.4507] [11810] [depth= 1] . ( 435 sec) [ -45899.4286] [11810] [depth= 1] . ( 456 sec) [ -45899.4136] [11810] [depth= 1] . ( 467 sec) [ -45899.3635] [11813] [depth= 2] . ( 474 sec) [ -45885.6405] [Branch lengths ] . ( 482 sec) [ -45885.4902] [GTR parameters ] . ( 482 sec) [ -45885.4841] [Alpha ][ 0.532828] . ( 499 sec) [ -45885.3684] [11813] [depth= 7] . ( 524 sec) [ -45884.1911] [11803] [depth= 2] . ( 534 sec) [ -45884.1699] [11803] [depth= 1] . ( 558 sec) [ -45883.6254] [11803] [depth= 1] . ( 568 sec) [ -45873.1598] [Branch lengths ] . ( 573 sec) [ -45873.0901] [GTR parameters ] . ( 574 sec) [ -45873.0901] [Alpha ][ 0.532828] . ( 578 sec) [ -45872.6582] [11804] [depth= 1] . ( 641 sec) [ -45872.6460] [11804] [depth= 1] . ( 660 sec) [ -45869.5939] [Branch lengths ] . ( 664 sec) [ -45869.5665] [GTR parameters ] . ( 665 sec) [ -45869.5626] [Alpha ][ 0.531763] . ( 750 sec) [ -45869.1379] [Branch lengths ] . ( 796 sec) [ -45868.3037] [11848] [depth= 1] . ( 907 sec) [ -45868.2383] [11848] [depth= 2] . ( 911 sec) [ -45863.5650] [11882] [depth= 1] . ( 1001 sec) [ -45862.8666] [Branch lengths ] . ( 1009 sec) [ -45862.8174] [GTR parameters ] . ( 1009 sec) [ -45862.7971] [Alpha ][ 0.533950] . ( 1264 sec) [ -45862.6670] [Branch lengths ] . ( 1264 sec) [ -45862.6670] [Topology ] . ( 1269 sec) [ -45862.6406] [Topology ] . ( 1275 sec) [ -45862.6278] [Topology ] . ( 1281 sec) [ -45862.6198] [Topology ] . ( 1286 sec) [ -45862.6147] [Topology ] . ( 1292 sec) [ -45862.6112] [Topology ] . ( 1297 sec) [ -45862.6089] [Topology ] . ( 1302 sec) [ -45862.5981] [GTR parameters ] . ( 1303 sec) [ -45862.5976] [Alpha ][ 0.533416] . ( 1303 sec) [ -45862.5976] [Topology ] . ( 1308 sec) [ -45862.5937] [Topology ] . ( 1314 sec) [ -45862.5912] [Topology ] . ( 1320 sec) [ -45862.5895] [Topology ] . ( 1325 sec) [ -45862.5883] [Topology ] . ( 1331 sec) [ -45862.5874] [Topology ] . ( 1333 sec) [ -45862.5873] [GTR parameters ] . ( 1333 sec) [ -45862.5873] [Alpha ][ 0.533416] . ( 1333 sec) [ -45862.5873] [Topology ] . ( 1339 sec) [ -45862.5866] [Topology ] . ( 1342 sec) [ -45862.5854] [GTR parameters ] . ( 1342 sec) [ -45862.5854] [Alpha ][ 0.533416] . ( 1343 sec) [ -45862.5854] [Topology ] . ( 1348 sec) [ -45862.5846] [Topology ] . ( 1352 sec) [ -45862.5844] [GTR parameters ] . ( 1352 sec) [ -45862.5844] [Alpha ][ 0.533416] . ( 1352 sec) [ -45862.5844] [Topology ] . ( 1358 sec) [ -45862.5837] [Topology ] . ( 1359 sec) [ -45862.5837] [GTR parameters ] . ( 1360 sec) [ -45862.5837] [Alpha ][ 0.533416] . Checking for NNIs, optimizing five branches... . ( 1411 sec) [ -45862.2636] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1463 sec) [ -45862.0583] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1515 sec) [ -45861.9819] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1566 sec) [ -45861.9265] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1616 sec) [ -45861.8930] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -45861.892981. . [Random start 2/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 4 sec) [ -91134.8046] [GTR parameters ] . ( 5 sec) [ -89063.9159] [Alpha ][ 0.500960] . ( 6 sec) [ -88526.7433] [20820] [depth= 12] . ( 6 sec) [ -88397.1436] [20777] [depth= 11] . ( 6 sec) [ -88006.8018] [20699] [depth= 2] . ( 7 sec) [ -87824.3258] [20660] [depth= 4] . ( 7 sec) [ -87682.7969] [20612] [depth= 1] . ( 7 sec) [ -87215.1367] [20525] [depth= 16] . ( 8 sec) [ -87158.7052] [20509] [depth= 4] . ( 8 sec) [ -87127.9814] [20496] [depth= 3] . ( 8 sec) [ -87078.5087] [20475] [depth= 6] . ( 8 sec) [ -86669.6338] [20427] [depth= 5] . ( 9 sec) [ -86551.1730] [20406] [depth= 5] . ( 9 sec) [ -86434.0081] [20405] [depth= 1] . ( 9 sec) [ -86410.9822] [20380] [depth= 1] . ( 10 sec) [ -86387.3217] [20370] [depth= 3] . ( 10 sec) [ -85672.1590] [20314] [depth= 12] . ( 10 sec) [ -85672.0339] [20308] [depth= 1] . ( 10 sec) [ -85655.4117] [20277] [depth= 5] . ( 11 sec) [ -85499.7419] [20283] [depth= 1] . ( 11 sec) [ -85179.9489] [20194] [depth= 8] . ( 11 sec) [ -84979.2495] [20162] [depth= 1] . ( 12 sec) [ -84868.4986] [20122] [depth= 11] . ( 12 sec) [ -84194.9111] [20076] [depth= 3] . ( 12 sec) [ -83935.9108] [19998] [depth= 2] . ( 13 sec) [ -83608.5366] [19904] [depth= 7] . ( 13 sec) [ -83514.8950] [19891] [depth= 13] . ( 13 sec) [ -83479.3573] [19889] [depth= 1] . ( 14 sec) [ -83372.9082] [19868] [depth= 19] . ( 14 sec) [ -83185.6463] [19880] [depth= 1] . ( 14 sec) [ -82836.8771] [19788] [depth= 24] . ( 14 sec) [ -82725.9830] [19707] [depth= 13] . ( 15 sec) [ -82657.8855] [19692] [depth= 8] . ( 15 sec) [ -82447.7683] [19677] [depth= 8] . ( 15 sec) [ -82415.9286] [19643] [depth= 2] . ( 16 sec) [ -82333.6719] [19643] [depth= 1] . ( 16 sec) [ -82072.2845] [19596] [depth= 32] . ( 16 sec) [ -81441.3253] [19591] [depth= 8] . ( 17 sec) [ -81426.8355] [19578] [depth= 8] . ( 17 sec) [ -81421.6526] [19581] [depth= 9] . ( 17 sec) [ -81310.4960] [19539] [depth= 2] . ( 17 sec) [ -81209.0405] [19477] [depth= 27] . ( 18 sec) [ -81005.2259] [19379] [depth= 15] . ( 18 sec) [ -80756.7073] [19357] [depth= 28] . ( 18 sec) [ -80715.0715] [19354] [depth= 1] . ( 19 sec) [ -80684.5311] [19346] [depth= 26] . ( 19 sec) [ -77620.8430] [19192] [depth= 20] . ( 19 sec) [ -77529.4921] [19143] [depth= 9] . ( 20 sec) [ -77422.8681] [19119] [depth= 6] . ( 20 sec) [ -77000.0115] [19114] [depth= 28] . ( 20 sec) [ -76841.5373] [19081] [depth= 9] . ( 21 sec) [ -76637.9723] [19044] [depth= 1] . ( 21 sec) [ -76032.3148] [19002] [depth= 30] . ( 21 sec) [ -75912.4717] [18955] [depth= 10] . ( 22 sec) [ -75755.6892] [18919] [depth= 20] . ( 22 sec) [ -75316.4311] [18904] [depth= 8] . ( 22 sec) [ -75266.9459] [18894] [depth= 1] . ( 23 sec) [ -75210.3113] [18868] [depth= 5] . ( 23 sec) [ -75156.3050] [18846] [depth= 5] . ( 23 sec) [ -75014.2014] [18769] [depth= 1] . ( 23 sec) [ -74852.3347] [18711] [depth= 15] . ( 24 sec) [ -74831.0803] [18714] [depth= 1] . ( 24 sec) [ -74716.4545] [18671] [depth= 1] . ( 24 sec) [ -74669.2707] [18667] [depth= 26] . ( 25 sec) [ -74478.9490] [18635] [depth= 9] . ( 25 sec) [ -74337.7553] [18572] [depth= 25] . ( 25 sec) [ -74213.2741] [18567] [depth= 1] . ( 26 sec) [ -74140.4469] [18557] [depth= 5] . ( 26 sec) [ -73973.4217] [18514] [depth= 4] . ( 26 sec) [ -73785.7008] [18453] [depth= 2] . ( 27 sec) [ -73379.6324] [18296] [depth= 20] . ( 27 sec) [ -73317.6319] [18293] [depth= 18] . ( 27 sec) [ -73076.9015] [18305] [depth= 1] . ( 28 sec) [ -72425.6336] [18255] [depth= 14] . ( 28 sec) [ -72162.6829] [18129] [depth= 2] . ( 28 sec) [ -71907.4984] [18108] [depth= 9] . ( 29 sec) [ -71768.1410] [18076] [depth= 13] . ( 29 sec) [ -71108.7861] [17974] [depth= 5] . ( 29 sec) [ -71104.4294] [17974] [depth= 1] . ( 29 sec) [ -70979.0142] [17914] [depth= 11] . ( 30 sec) [ -70784.0725] [17749] [depth= 23] . ( 30 sec) [ -70711.9292] [17747] [depth= 6] . ( 31 sec) [ -70465.6169] [17720] [depth= 30] . ( 31 sec) [ -70178.7749] [17622] [depth= 20] . ( 31 sec) [ -70131.1862] [17598] [depth= 1] . ( 32 sec) [ -69500.4578] [17527] [depth= 24] . ( 32 sec) [ -69403.7133] [17468] [depth= 9] . ( 32 sec) [ -69301.9092] [17442] [depth= 4] . ( 33 sec) [ -69286.0266] [17449] [depth= 19] . ( 33 sec) [ -69077.2826] [17446] [depth= 7] . ( 33 sec) [ -68876.4376] [17371] [depth= 12] . ( 34 sec) [ -68784.6620] [17352] [depth= 2] . ( 34 sec) [ -68697.4396] [17317] [depth= 28] . ( 34 sec) [ -68627.4100] [17302] [depth= 3] . ( 35 sec) [ -68427.2763] [17268] [depth= 26] . ( 35 sec) [ -68232.5020] [17170] [depth= 10] . ( 35 sec) [ -68118.7317] [17168] [depth= 2] . ( 35 sec) [ -67895.5754] [17115] [depth= 12] . ( 36 sec) [ -67870.5157] [17093] [depth= 1] . ( 36 sec) [ -67821.0547] [17086] [depth= 1] . ( 37 sec) [ -67800.3726] [17082] [depth= 6] . ( 37 sec) [ -67773.1844] [17071] [depth= 2] . ( 37 sec) [ -67753.9926] [17050] [depth= 7] . ( 38 sec) [ -67568.9179] [16996] [depth= 3] . ( 38 sec) [ -67551.5817] [16996] [depth= 1] . ( 38 sec) [ -67504.8679] [17009] [depth= 1] . ( 39 sec) [ -67461.0805] [16996] [depth= 1] . ( 39 sec) [ -67229.2247] [16947] [depth= 16] . ( 39 sec) [ -67220.7097] [16922] [depth= 1] . ( 40 sec) [ -67137.2395] [16899] [depth= 6] . ( 40 sec) [ -67121.9760] [16899] [depth= 1] . ( 40 sec) [ -67120.4522] [16899] [depth= 1] . ( 41 sec) [ -67104.0762] [16889] [depth= 6] . ( 41 sec) [ -66822.9638] [16848] [depth= 11] . ( 41 sec) [ -66752.5328] [16838] [depth= 1] . ( 41 sec) [ -66536.4413] [16762] [depth= 10] . ( 42 sec) [ -66303.6937] [16639] [depth= 16] . ( 42 sec) [ -65949.8987] [16542] [depth= 26] . ( 42 sec) [ -65800.5305] [16533] [depth= 1] . ( 43 sec) [ -65683.7165] [16440] [depth= 16] . ( 43 sec) [ -65577.0062] [16442] [depth= 18] . ( 44 sec) [ -65456.7110] [16428] [depth= 1] . ( 44 sec) [ -65377.0308] [16367] [depth= 24] . ( 45 sec) [ -65296.6258] [16351] [depth= 25] . ( 45 sec) [ -65230.5177] [16345] [depth= 4] . ( 45 sec) [ -65207.7616] [16345] [depth= 1] . ( 46 sec) [ -65139.3823] [16319] [depth= 9] . ( 46 sec) [ -64987.4499] [16297] [depth= 10] . ( 46 sec) [ -64817.7441] [16256] [depth= 3] . ( 46 sec) [ -64689.9793] [16187] [depth= 10] . ( 47 sec) [ -64416.8868] [16184] [depth= 3] . ( 47 sec) [ -64261.5989] [16131] [depth= 26] . ( 47 sec) [ -64225.0818] [16118] [depth= 1] . ( 48 sec) [ -64135.0922] [16095] [depth= 2] . ( 48 sec) [ -64092.4507] [16096] [depth= 1] . ( 48 sec) [ -64076.4155] [16097] [depth= 1] . ( 48 sec) [ -64017.3745] [16094] [depth= 2] . ( 49 sec) [ -64000.6895] [16095] [depth= 1] . ( 49 sec) [ -63830.8350] [16025] [depth= 21] . ( 50 sec) [ -63781.9424] [16018] [depth= 8] . ( 50 sec) [ -63669.8068] [16002] [depth= 13] . ( 50 sec) [ -63590.4629] [15987] [depth= 25] . ( 51 sec) [ -63558.1237] [15980] [depth= 5] . ( 51 sec) [ -63390.2246] [15937] [depth= 13] . ( 51 sec) [ -63382.4253] [15937] [depth= 1] . ( 52 sec) [ -63377.2864] [15937] [depth= 1] . ( 52 sec) [ -63367.1267] [15924] [depth= 1] . ( 52 sec) [ -63253.3618] [15900] [depth= 6] . ( 53 sec) [ -63244.8333] [15904] [depth= 2] . ( 53 sec) [ -63207.9515] [15898] [depth= 2] . ( 53 sec) [ -63158.6852] [15884] [depth= 1] . ( 54 sec) [ -63106.5571] [15880] [depth= 1] . ( 54 sec) [ -63029.2955] [15850] [depth= 1] . ( 55 sec) [ -63026.3760] [15847] [depth= 1] . ( 55 sec) [ -62811.2385] [15783] [depth= 7] . ( 55 sec) [ -62797.9538] [15801] [depth= 1] . ( 56 sec) [ -62766.1124] [15783] [depth= 1] . ( 56 sec) [ -62737.5323] [15783] [depth= 15] . ( 56 sec) [ -62654.7300] [15773] [depth= 3] . ( 57 sec) [ -62647.3494] [15771] [depth= 1] . ( 57 sec) [ -62506.7780] [15724] [depth= 5] . ( 58 sec) [ -62473.7903] [15725] [depth= 1] . ( 58 sec) [ -62422.3621] [15728] [depth= 1] . ( 58 sec) [ -62398.4517] [15700] [depth= 2] . ( 58 sec) [ -62377.8802] [15632] [depth= 22] . ( 59 sec) [ -62134.5022] [15593] [depth= 1] . ( 59 sec) [ -61692.9294] [15400] [depth= 14] . ( 59 sec) [ -61551.1537] [15383] [depth= 2] . ( 60 sec) [ -61364.5285] [15351] [depth= 2] . ( 60 sec) [ -60702.7031] [15351] [depth= 19] . ( 60 sec) [ -60385.2025] [15186] [depth= 7] . ( 61 sec) [ -59491.3768] [15077] [depth= 4] . ( 61 sec) [ -59428.5556] [15041] [depth= 5] . ( 61 sec) [ -59389.3475] [15037] [depth= 1] . ( 61 sec) [ -59282.3027] [15020] [depth= 13] . ( 62 sec) [ -59185.5971] [14968] [depth= 2] . ( 62 sec) [ -58971.8495] [14952] [depth= 2] . ( 63 sec) [ -58923.2286] [14951] [depth= 19] . ( 63 sec) [ -58839.5943] [14941] [depth= 9] . ( 63 sec) [ -58829.3520] [14937] [depth= 1] . ( 63 sec) [ -58827.5583] [14916] [depth= 1] . ( 64 sec) [ -58805.8669] [14891] [depth= 1] . ( 64 sec) [ -58796.1877] [14901] [depth= 1] . ( 64 sec) [ -58790.7202] [14911] [depth= 1] . ( 65 sec) [ -58694.0448] [14874] [depth= 6] . ( 65 sec) [ -58680.5665] [14867] [depth= 1] . ( 65 sec) [ -58679.4582] [14870] [depth= 1] . ( 66 sec) [ -58366.6901] [14877] [depth= 1] . ( 66 sec) [ -58207.9326] [14834] [depth= 13] . ( 66 sec) [ -58206.6369] [14833] [depth= 2] . ( 67 sec) [ -58083.2359] [14789] [depth= 1] . ( 67 sec) [ -58045.3084] [14784] [depth= 3] . ( 67 sec) [ -58035.2933] [14826] [depth= 8] . ( 68 sec) [ -57995.8218] [14814] [depth= 1] . ( 68 sec) [ -57836.6176] [14732] [depth= 10] . ( 69 sec) [ -57830.5677] [14691] [depth= 21] . ( 69 sec) [ -57694.0027] [14695] [depth= 2] . ( 69 sec) [ -57559.0389] [14613] [depth= 24] . ( 69 sec) [ -57500.3329] [14612] [depth= 11] . ( 70 sec) [ -57463.4078] [14592] [depth= 1] . ( 70 sec) [ -57380.3042] [14561] [depth= 26] . ( 71 sec) [ -57182.0095] [14461] [depth= 23] . ( 71 sec) [ -57167.8543] [14465] [depth= 1] . ( 71 sec) [ -56973.1729] [14462] [depth= 1] . ( 72 sec) [ -56970.9835] [14468] [depth= 1] . ( 72 sec) [ -56966.4334] [14467] [depth= 2] . ( 72 sec) [ -56652.4366] [14325] [depth= 20] . ( 73 sec) [ -56647.1970] [14321] [depth= 1] . ( 73 sec) [ -56639.4470] [14321] [depth= 5] . ( 73 sec) [ -56567.1516] [14300] [depth= 7] . ( 74 sec) [ -56560.5554] [14295] [depth= 1] . ( 74 sec) [ -56555.8267] [14296] [depth= 2] . ( 74 sec) [ -56532.3295] [14288] [depth= 2] . ( 75 sec) [ -56490.0609] [14284] [depth= 2] . ( 75 sec) [ -56486.4028] [14281] [depth= 3] . ( 75 sec) [ -56464.8786] [14281] [depth= 2] . ( 76 sec) [ -56433.7172] [14267] [depth= 5] . ( 76 sec) [ -56430.3965] [14268] [depth= 1] . ( 78 sec) [ -56060.9571] [14184] [depth= 7] . ( 78 sec) [ -55867.5261] [14121] [depth= 10] . ( 78 sec) [ -55725.1618] [14053] [depth= 7] . ( 79 sec) [ -55673.7723] [14020] [depth= 5] . ( 79 sec) [ -55559.4079] [13968] [depth= 20] . ( 79 sec) [ -55512.2726] [13947] [depth= 13] . ( 80 sec) [ -55510.0310] [13952] [depth= 1] . ( 80 sec) [ -55497.2645] [13944] [depth= 1] . ( 80 sec) [ -55443.8797] [13935] [depth= 17] . ( 81 sec) [ -55195.8586] [13889] [depth= 10] . ( 82 sec) [ -54679.6690] [13808] [depth= 2] . ( 82 sec) [ -54312.9679] [13774] [depth= 3] . ( 82 sec) [ -54028.4706] [13714] [depth= 1] . ( 83 sec) [ -53837.3522] [13658] [depth= 8] . ( 83 sec) [ -53836.0885] [13632] [depth= 1] . ( 83 sec) [ -53824.0526] [13625] [depth= 1] . ( 84 sec) [ -53785.0793] [13622] [depth= 1] . ( 84 sec) [ -53778.8819] [13604] [depth= 13] . ( 84 sec) [ -53768.0653] [13609] [depth= 1] . ( 85 sec) [ -53718.6917] [13587] [depth= 7] . ( 85 sec) [ -53678.7187] [13548] [depth= 2] . ( 86 sec) [ -53419.9400] [13477] [depth= 18] . ( 86 sec) [ -53329.5489] [13475] [depth= 6] . ( 86 sec) [ -53311.4666] [13481] [depth= 1] . ( 87 sec) [ -53083.8013] [13376] [depth= 5] . ( 87 sec) [ -53053.6428] [13371] [depth= 2] . ( 87 sec) [ -53043.0347] [13375] [depth= 1] . ( 87 sec) [ -52571.6302] [13230] [depth= 5] . ( 88 sec) [ -52268.2173] [13154] [depth= 8] . ( 88 sec) [ -52264.1085] [13155] [depth= 1] . ( 89 sec) [ -52255.4715] [13147] [depth= 1] . ( 89 sec) [ -52224.3404] [13141] [depth= 19] . ( 89 sec) [ -52147.7584] [13117] [depth= 3] . ( 90 sec) [ -52128.2508] [13109] [depth= 1] . ( 90 sec) [ -52112.7384] [13108] [depth= 1] . ( 90 sec) [ -51914.5260] [13093] [depth= 6] . ( 90 sec) [ -51842.4441] [13058] [depth= 9] . ( 91 sec) [ -51601.4441] [12931] [depth= 4] . ( 91 sec) [ -51526.5703] [12905] [depth= 2] . ( 91 sec) [ -51519.9191] [12897] [depth= 3] . ( 92 sec) [ -51519.7973] [12879] [depth= 2] . ( 92 sec) [ -51493.3619] [12877] [depth= 1] . ( 92 sec) [ -51362.8572] [12877] [depth= 2] . ( 93 sec) [ -51188.3514] [12745] [depth= 15] . ( 93 sec) [ -51107.9057] [12748] [depth= 1] . ( 93 sec) [ -50969.0555] [12733] [depth= 1] . ( 94 sec) [ -50967.1043] [12733] [depth= 1] . ( 94 sec) [ -50779.9846] [12657] [depth= 16] . ( 95 sec) [ -50751.2077] [12647] [depth= 8] . ( 95 sec) [ -50693.7447] [12638] [depth= 1] . ( 95 sec) [ -50657.3171] [12634] [depth= 1] . ( 96 sec) [ -50656.0023] [12640] [depth= 1] . ( 96 sec) [ -50649.1601] [12639] [depth= 1] . ( 96 sec) [ -50594.9808] [12624] [depth= 6] . ( 97 sec) [ -50587.8091] [12624] [depth= 2] . ( 97 sec) [ -50582.7369] [12631] [depth= 1] . ( 97 sec) [ -50517.8703] [12588] [depth= 1] . ( 98 sec) [ -50512.3802] [12592] [depth= 1] . ( 98 sec) [ -50505.6106] [12595] [depth= 1] . ( 98 sec) [ -50479.3196] [12582] [depth= 1] . ( 99 sec) [ -50360.4547] [12551] [depth= 1] . ( 99 sec) [ -50356.0274] [12527] [depth= 6] . ( 99 sec) [ -50338.9046] [12500] [depth= 1] . ( 100 sec) [ -50338.0187] [12502] [depth= 1] . ( 100 sec) [ -50261.1097] [12479] [depth= 12] . ( 101 sec) [ -50119.1385] [12459] [depth= 1] . ( 101 sec) [ -49898.7729] [12459] [depth= 1] . ( 101 sec) [ -49858.2686] [12474] [depth= 1] . ( 101 sec) [ -49796.9986] [12466] [depth= 3] . ( 102 sec) [ -49788.8721] [12466] [depth= 6] . ( 102 sec) [ -49780.3253] [12452] [depth= 2] . ( 102 sec) [ -49739.4569] [12435] [depth= 8] . ( 103 sec) [ -49698.4967] [12424] [depth= 1] . ( 103 sec) [ -49398.8015] [12349] [depth= 22] . ( 103 sec) [ -49333.9154] [12336] [depth= 1] . ( 104 sec) [ -49221.4355] [12328] [depth= 2] . ( 104 sec) [ -49196.2209] [12324] [depth= 1] . ( 104 sec) [ -49132.0171] [12292] [depth= 8] . ( 105 sec) [ -49128.5418] [12293] [depth= 1] . ( 105 sec) [ -49121.0767] [12294] [depth= 1] . ( 106 sec) [ -49107.3529] [12293] [depth= 1] . ( 106 sec) [ -49030.9227] [12290] [depth= 4] . ( 106 sec) [ -49026.8730] [12295] [depth= 1] . ( 107 sec) [ -49008.9063] [12305] [depth= 1] . ( 107 sec) [ -48944.2766] [12263] [depth= 2] . ( 107 sec) [ -48816.7232] [12259] [depth= 2] . ( 108 sec) [ -48684.0498] [12204] [depth= 11] . ( 108 sec) [ -48634.4820] [12203] [depth= 1] . ( 109 sec) [ -48623.8631] [12203] [depth= 1] . ( 111 sec) [ -47706.5723] [Branch lengths ] . ( 124 sec) [ -47316.7946] [GTR parameters ] . ( 125 sec) [ -47316.7499] [Alpha ][ 0.504729] . ( 126 sec) [ -47306.4586] [12194] [depth= 1] . ( 127 sec) [ -47299.3334] [12185] [depth= 7] . ( 127 sec) [ -47292.0742] [12181] [depth= 1] . ( 127 sec) [ -47273.1685] [12170] [depth= 5] . ( 127 sec) [ -47234.0586] [12144] [depth= 1] . ( 128 sec) [ -47163.2835] [12095] [depth= 2] . ( 128 sec) [ -47115.5334] [12112] [depth= 1] . ( 129 sec) [ -47113.0013] [12112] [depth= 1] . ( 129 sec) [ -47096.6246] [12115] [depth= 1] . ( 130 sec) [ -47063.9070] [12101] [depth= 3] . ( 130 sec) [ -47063.0150] [12102] [depth= 1] . ( 130 sec) [ -46937.6572] [12056] [depth= 4] . ( 130 sec) [ -46909.5246] [12060] [depth= 1] . ( 131 sec) [ -46907.6141] [12060] [depth= 1] . ( 131 sec) [ -46892.8096] [12051] [depth= 1] . ( 131 sec) [ -46887.8185] [12045] [depth= 5] . ( 132 sec) [ -46877.2620] [12040] [depth= 1] . ( 133 sec) [ -46877.0859] [12044] [depth= 15] . ( 133 sec) [ -46759.6263] [12001] [depth= 12] . ( 134 sec) [ -46759.2012] [11999] [depth= 1] . ( 134 sec) [ -46756.9969] [12000] [depth= 1] . ( 134 sec) [ -46736.9777] [11994] [depth= 6] . ( 135 sec) [ -46731.7926] [11994] [depth= 3] . ( 135 sec) [ -46724.1212] [11984] [depth= 1] . ( 136 sec) [ -46724.0527] [11984] [depth= 2] . ( 137 sec) [ -46723.9116] [11987] [depth= 1] . ( 137 sec) [ -46720.7954] [11987] [depth= 1] . ( 138 sec) [ -46716.0457] [11987] [depth= 1] . ( 139 sec) [ -46705.7446] [11973] [depth= 3] . ( 139 sec) [ -46671.5122] [11972] [depth= 1] . ( 140 sec) [ -46668.8222] [11967] [depth= 1] . ( 141 sec) [ -46668.4677] [11966] [depth= 2] . ( 141 sec) [ -46668.3758] [11969] [depth= 1] . ( 141 sec) [ -46664.1937] [11969] [depth= 1] . ( 141 sec) [ -46661.6502] [11970] [depth= 1] . ( 143 sec) [ -46660.9628] [11972] [depth= 2] . ( 143 sec) [ -46616.9198] [11949] [depth= 6] . ( 143 sec) [ -46615.5795] [11948] [depth= 1] . ( 144 sec) [ -46536.3809] [11897] [depth= 16] . ( 146 sec) [ -46536.0964] [11893] [depth= 1] . ( 146 sec) [ -46533.0889] [11888] [depth= 1] . ( 147 sec) [ -46532.9123] [11889] [depth= 1] . ( 148 sec) [ -46525.2867] [11891] [depth= 1] . ( 149 sec) [ -46523.9006] [11893] [depth= 1] . ( 150 sec) [ -46523.1530] [11873] [depth= 8] . ( 150 sec) [ -46522.5869] [11873] [depth= 2] . ( 151 sec) [ -46522.1350] [11873] [depth= 1] . ( 152 sec) [ -46519.2658] [11875] [depth= 1] . ( 152 sec) [ -46516.4217] [11873] [depth= 3] . ( 154 sec) [ -46515.4455] [11874] [depth= 1] . ( 154 sec) [ -46477.2026] [11862] [depth= 2] . ( 156 sec) [ -46477.0707] [11859] [depth= 1] . ( 156 sec) [ -46475.0899] [11859] [depth= 1] . ( 157 sec) [ -46474.2177] [11859] [depth= 3] . ( 157 sec) [ -46465.1674] [11851] [depth= 2] . ( 158 sec) [ -46465.0284] [11855] [depth= 1] . ( 159 sec) [ -46463.8908] [11859] [depth= 2] . ( 159 sec) [ -46463.4670] [11861] [depth= 1] . ( 160 sec) [ -46462.0962] [11862] [depth= 2] . ( 161 sec) [ -46456.8244] [11851] [depth= 4] . ( 162 sec) [ -46422.9148] [11835] [depth= 7] . ( 162 sec) [ -46422.9015] [11831] [depth= 3] . ( 163 sec) [ -46419.2656] [11831] [depth= 1] . ( 163 sec) [ -46419.0058] [11831] [depth= 1] . ( 164 sec) [ -46415.8179] [11835] [depth= 1] . ( 164 sec) [ -46414.8661] [11835] [depth= 1] . ( 165 sec) [ -46413.7916] [11834] [depth= 2] . ( 165 sec) [ -46405.3089] [11838] [depth= 1] . ( 166 sec) [ -46404.9935] [11843] [depth= 1] . ( 166 sec) [ -46403.8317] [11827] [depth= 1] . ( 168 sec) [ -46403.3018] [11823] [depth= 1] . ( 169 sec) [ -46397.7914] [11816] [depth= 1] . ( 170 sec) [ -46396.3431] [11820] [depth= 7] . ( 171 sec) [ -46395.1944] [11824] [depth= 2] . ( 171 sec) [ -46367.9407] [11819] [depth= 1] . ( 171 sec) [ -46336.7294] [11789] [depth= 4] . ( 172 sec) [ -46336.5858] [11788] [depth= 1] . ( 172 sec) [ -46336.0475] [11787] [depth= 1] . ( 173 sec) [ -46335.6930] [11785] [depth= 1] . ( 174 sec) [ -46335.2174] [11784] [depth= 6] . ( 174 sec) [ -46329.3916] [11775] [depth= 6] . ( 175 sec) [ -46328.7297] [11775] [depth= 1] . ( 175 sec) [ -46327.3703] [11774] [depth= 4] . ( 176 sec) [ -46322.0495] [11771] [depth= 3] . ( 176 sec) [ -46321.7565] [11771] [depth= 1] . ( 176 sec) [ -46321.7445] [11771] [depth= 1] . ( 177 sec) [ -46321.5284] [11768] [depth= 1] . ( 178 sec) [ -46316.1772] [11771] [depth= 4] . ( 178 sec) [ -46308.0833] [11774] [depth= 1] . ( 179 sec) [ -46307.9898] [11778] [depth= 2] . ( 180 sec) [ -46298.6341] [11764] [depth= 9] . ( 181 sec) [ -46297.9357] [11761] [depth= 1] . ( 186 sec) [ -46291.3227] [11761] [depth= 1] . ( 186 sec) [ -46270.1979] [11762] [depth= 2] . ( 186 sec) [ -46269.1240] [11765] [depth= 1] . ( 187 sec) [ -46265.4247] [11763] [depth= 1] . ( 188 sec) [ -46265.2992] [11763] [depth= 1] . ( 188 sec) [ -46253.2048] [11758] [depth= 6] . ( 189 sec) [ -46248.8643] [11756] [depth= 1] . ( 190 sec) [ -46232.1821] [11747] [depth= 1] . ( 190 sec) [ -46231.9352] [11746] [depth= 1] . ( 191 sec) [ -46228.7316] [11751] [depth= 1] . ( 191 sec) [ -46228.1811] [11748] [depth= 2] . ( 192 sec) [ -46227.6055] [11748] [depth= 1] . ( 193 sec) [ -46226.5989] [11748] [depth= 1] . ( 193 sec) [ -46222.1794] [11753] [depth= 1] . ( 193 sec) [ -46202.5627] [11730] [depth= 7] . ( 194 sec) [ -46202.5302] [11730] [depth= 1] . ( 195 sec) [ -46149.5009] [11731] [depth= 1] . ( 195 sec) [ -46145.0960] [11729] [depth= 1] . ( 195 sec) [ -46142.5566] [11727] [depth= 1] . ( 196 sec) [ -46142.3059] [11727] [depth= 1] . ( 197 sec) [ -46130.3293] [11723] [depth= 1] . ( 199 sec) [ -46127.8430] [11716] [depth= 1] . ( 202 sec) [ -46012.0365] [Branch lengths ] . ( 212 sec) [ -46007.7724] [GTR parameters ] . ( 212 sec) [ -46006.0452] [Alpha ][ 0.528546] . ( 213 sec) [ -46004.7299] [11713] [depth= 1] . ( 217 sec) [ -46004.2374] [11713] [depth= 1] . ( 217 sec) [ -46000.4090] [11706] [depth= 9] . ( 220 sec) [ -46000.3710] [11706] [depth= 1] . ( 222 sec) [ -45996.2099] [11739] [depth= 13] . ( 225 sec) [ -45996.0418] [11739] [depth= 1] . ( 228 sec) [ -45995.9286] [11739] [depth= 1] . ( 230 sec) [ -45995.4177] [11740] [depth= 1] . ( 233 sec) [ -45995.2592] [11742] [depth= 1] . ( 234 sec) [ -45995.0861] [11742] [depth= 1] . ( 235 sec) [ -45994.1931] [11742] [depth= 1] . ( 238 sec) [ -45993.7073] [11742] [depth= 1] . ( 239 sec) [ -45992.0146] [11743] [depth= 2] . ( 241 sec) [ -45991.6794] [11745] [depth= 2] . ( 243 sec) [ -45990.7765] [11749] [depth= 1] . ( 244 sec) [ -45986.3724] [11742] [depth= 4] . ( 246 sec) [ -45986.3601] [11742] [depth= 1] . ( 247 sec) [ -45985.3197] [11740] [depth= 1] . ( 251 sec) [ -45985.0169] [11740] [depth= 1] . ( 251 sec) [ -45984.5876] [11740] [depth= 1] . ( 256 sec) [ -45982.5690] [11741] [depth= 2] . ( 264 sec) [ -45982.5099] [11742] [depth= 1] . ( 265 sec) [ -45982.4801] [11742] [depth= 1] . ( 266 sec) [ -45982.1178] [11746] [depth= 2] . ( 268 sec) [ -45980.2967] [11755] [depth= 1] . ( 271 sec) [ -45980.2635] [11755] [depth= 1] . ( 272 sec) [ -45978.0972] [11757] [depth= 2] . ( 279 sec) [ -45946.9430] [Branch lengths ] . ( 288 sec) [ -45946.6035] [GTR parameters ] . ( 289 sec) [ -45946.4951] [Alpha ][ 0.534082] . ( 293 sec) [ -45946.2310] [11756] [depth= 1] . ( 294 sec) [ -45944.1440] [11754] [depth= 5] . ( 295 sec) [ -45943.8581] [11746] [depth= 3] . ( 297 sec) [ -45943.6001] [11748] [depth= 1] . ( 303 sec) [ -45943.1926] [11749] [depth= 1] . ( 305 sec) [ -45943.0693] [11745] [depth= 1] . ( 306 sec) [ -45942.3794] [11748] [depth= 1] . ( 308 sec) [ -45942.3406] [11748] [depth= 1] . ( 316 sec) [ -45942.2112] [11748] [depth= 1] . ( 317 sec) [ -45942.1664] [11748] [depth= 1] . ( 323 sec) [ -45941.5262] [11751] [depth= 1] . ( 324 sec) [ -45941.3214] [11752] [depth= 1] . ( 329 sec) [ -45941.2483] [11754] [depth= 2] . ( 331 sec) [ -45941.0980] [11753] [depth= 1] . ( 331 sec) [ -45940.4746] [11752] [depth= 2] . ( 340 sec) [ -45940.4178] [11757] [depth= 1] . ( 347 sec) [ -45939.4398] [11757] [depth= 1] . ( 347 sec) [ -45935.7795] [11751] [depth= 3] . ( 360 sec) [ -45922.3450] [Branch lengths ] . ( 365 sec) [ -45922.1566] [GTR parameters ] . ( 365 sec) [ -45922.1421] [Alpha ][ 0.536040] . ( 380 sec) [ -45922.0317] [11756] [depth= 1] . ( 395 sec) [ -45921.9872] [11759] [depth= 1] . ( 415 sec) [ -45921.9363] [11757] [depth= 2] . ( 432 sec) [ -45921.4852] [11756] [depth= 3] . ( 445 sec) [ -45915.0439] [Branch lengths ] . ( 454 sec) [ -45914.9594] [GTR parameters ] . ( 454 sec) [ -45914.9539] [Alpha ][ 0.537209] . ( 500 sec) [ -45914.6002] [11755] [depth= 4] . ( 529 sec) [ -45910.8730] [Branch lengths ] . ( 536 sec) [ -45910.8193] [GTR parameters ] . ( 537 sec) [ -45910.8193] [Alpha ][ 0.537209] . ( 612 sec) [ -45908.4520] [Branch lengths ] . ( 655 sec) [ -45900.2907] [11793] [depth= 7] . ( 707 sec) [ -45900.2070] [11790] [depth= 2] . ( 708 sec) [ -45899.3896] [11788] [depth= 1] . ( 764 sec) [ -45898.7304] [11794] [depth= 3] . ( 768 sec) [ -45896.8412] [11886] [depth= 2] . ( 828 sec) [ -45895.6104] [11877] [depth= 1] . ( 835 sec) [ -45891.4786] [11893] [depth= 1] . ( 836 sec) [ -45890.4667] [11904] [depth= 2] . ( 841 sec) [ -45886.6463] [11893] [depth= 1] . ( 864 sec) [ -45876.9641] [Branch lengths ] . ( 872 sec) [ -45876.6539] [GTR parameters ] . ( 873 sec) [ -45876.5779] [Alpha ][ 0.532698] . ( 885 sec) [ -45875.7669] [11909] [depth= 2] . ( 886 sec) [ -45875.6469] [11899] [depth= 1] . ( 1026 sec) [ -45871.9555] [11902] [depth= 2] . ( 1031 sec) [ -45869.7151] [11903] [depth= 1] . ( 1132 sec) [ -45866.8053] [Branch lengths ] . ( 1136 sec) [ -45866.7604] [GTR parameters ] . ( 1136 sec) [ -45866.7551] [Alpha ][ 0.533757] . ( 1159 sec) [ -45866.7387] [11902] [depth= 2] . ( 1230 sec) [ -45866.5997] [11903] [depth= 1] . ( 1284 sec) [ -45866.5871] [11902] [depth= 1] . ( 1393 sec) [ -45864.8462] [Branch lengths ] . ( 1395 sec) [ -45864.8394] [GTR parameters ] . ( 1396 sec) [ -45864.8394] [Alpha ][ 0.533757] . ( 1652 sec) [ -45864.5792] [Branch lengths ] . ( 1652 sec) [ -45864.5792] [Topology ] . ( 1657 sec) [ -45864.5405] [Topology ] . ( 1663 sec) [ -45864.5232] [Topology ] . ( 1668 sec) [ -45864.5130] [Topology ] . ( 1674 sec) [ -45864.5065] [Topology ] . ( 1680 sec) [ -45864.5023] [Topology ] . ( 1685 sec) [ -45864.4995] [Topology ] . ( 1688 sec) [ -45864.4829] [GTR parameters ] . ( 1688 sec) [ -45864.4829] [Alpha ][ 0.533757] . ( 1688 sec) [ -45864.4829] [Topology ] . ( 1694 sec) [ -45864.4780] [Topology ] . ( 1699 sec) [ -45864.4750] [Topology ] . ( 1705 sec) [ -45864.4729] [Topology ] . ( 1710 sec) [ -45864.4714] [Topology ] . ( 1716 sec) [ -45864.4703] [Topology ] . ( 1721 sec) [ -45864.4695] [Topology ] . ( 1728 sec) [ -45864.4677] [GTR parameters ] . ( 1729 sec) [ -45864.4676] [Alpha ][ 0.533224] . ( 1729 sec) [ -45864.4676] [Topology ] . ( 1735 sec) [ -45864.4665] [Topology ] . ( 1740 sec) [ -45864.4657] [Topology ] . ( 1743 sec) [ -45864.4655] [GTR parameters ] . ( 1743 sec) [ -45864.4655] [Alpha ][ 0.533224] . ( 1743 sec) [ -45864.4655] [Topology ] . ( 1749 sec) [ -45864.4648] [Topology ] . ( 1750 sec) [ -45864.4648] [GTR parameters ] . ( 1750 sec) [ -45864.4648] [Alpha ][ 0.533224] . Checking for NNIs, optimizing five branches... . ( 1803 sec) [ -45864.3865] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1855 sec) [ -45864.3286] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1908 sec) [ -45864.2840] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -45864.283992. . [Random start 3/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 6 sec) [ -89513.2775] [GTR parameters ] . ( 7 sec) [ -87433.9137] [Alpha ][ 0.500960] . ( 7 sec) [ -86991.5577] [21176] [depth= 14] . ( 8 sec) [ -86818.8962] [21128] [depth= 16] . ( 8 sec) [ -86814.2131] [21113] [depth= 1] . ( 8 sec) [ -86770.5741] [21087] [depth= 13] . ( 8 sec) [ -86717.6417] [21079] [depth= 1] . ( 9 sec) [ -86675.5596] [21067] [depth= 14] . ( 9 sec) [ -86513.7131] [21080] [depth= 1] . ( 9 sec) [ -86477.9885] [21060] [depth= 7] . ( 9 sec) [ -86453.1989] [21027] [depth= 1] . ( 10 sec) [ -86148.0143] [20979] [depth= 11] . ( 10 sec) [ -85873.3035] [20969] [depth= 3] . ( 10 sec) [ -85501.0242] [20933] [depth= 5] . ( 11 sec) [ -85314.2133] [20855] [depth= 3] . ( 11 sec) [ -85283.0047] [20846] [depth= 13] . ( 11 sec) [ -85262.8270] [20844] [depth= 1] . ( 11 sec) [ -84900.9153] [20828] [depth= 1] . ( 12 sec) [ -84495.9665] [20658] [depth= 6] . ( 12 sec) [ -84035.1508] [20631] [depth= 6] . ( 12 sec) [ -83967.7988] [20601] [depth= 6] . ( 12 sec) [ -83953.3457] [20596] [depth= 3] . ( 13 sec) [ -83929.2021] [20583] [depth= 1] . ( 13 sec) [ -83831.5536] [20587] [depth= 5] . ( 13 sec) [ -83382.5313] [20545] [depth= 7] . ( 14 sec) [ -82878.9624] [20515] [depth= 1] . ( 14 sec) [ -82525.9247] [20389] [depth= 16] . ( 14 sec) [ -82494.8999] [20393] [depth= 1] . ( 14 sec) [ -82362.1058] [20306] [depth= 6] . ( 15 sec) [ -81441.1648] [20305] [depth= 2] . ( 15 sec) [ -81381.6934] [20266] [depth= 1] . ( 15 sec) [ -80671.9942] [19915] [depth= 12] . ( 16 sec) [ -80347.2060] [19839] [depth= 11] . ( 16 sec) [ -79923.2986] [19812] [depth= 10] . ( 16 sec) [ -79721.5695] [19743] [depth= 5] . ( 17 sec) [ -79629.3575] [19731] [depth= 5] . ( 17 sec) [ -78834.6846] [19713] [depth= 18] . ( 17 sec) [ -78627.6484] [19665] [depth= 5] . ( 18 sec) [ -78495.2297] [19643] [depth= 2] . ( 18 sec) [ -78268.6319] [19453] [depth= 10] . ( 18 sec) [ -78204.2857] [19433] [depth= 5] . ( 18 sec) [ -78147.6537] [19428] [depth= 2] . ( 19 sec) [ -78075.1960] [19393] [depth= 16] . ( 19 sec) [ -77620.7392] [19259] [depth= 14] . ( 19 sec) [ -76910.8858] [19215] [depth= 5] . ( 20 sec) [ -76466.4994] [19181] [depth= 16] . ( 20 sec) [ -76060.0385] [19119] [depth= 9] . ( 20 sec) [ -75170.0135] [18877] [depth= 15] . ( 21 sec) [ -74995.9239] [18869] [depth= 2] . ( 21 sec) [ -74747.9309] [18796] [depth= 2] . ( 21 sec) [ -74352.2376] [18808] [depth= 1] . ( 21 sec) [ -74017.8906] [18795] [depth= 23] . ( 22 sec) [ -73941.2947] [18744] [depth= 1] . ( 22 sec) [ -73832.6214] [18719] [depth= 14] . ( 22 sec) [ -73246.8930] [18627] [depth= 22] . ( 23 sec) [ -72930.7141] [18608] [depth= 14] . ( 23 sec) [ -72890.2894] [18585] [depth= 1] . ( 23 sec) [ -72740.4610] [18566] [depth= 1] . ( 24 sec) [ -72492.1936] [18488] [depth= 25] . ( 24 sec) [ -72148.5424] [18346] [depth= 15] . ( 24 sec) [ -71932.2367] [18330] [depth= 2] . ( 25 sec) [ -71930.3033] [18352] [depth= 1] . ( 25 sec) [ -71920.3908] [18366] [depth= 1] . ( 26 sec) [ -71761.0453] [18238] [depth= 14] . ( 26 sec) [ -71753.0300] [18220] [depth= 2] . ( 26 sec) [ -71599.9296] [18212] [depth= 25] . ( 26 sec) [ -71247.5891] [18208] [depth= 2] . ( 27 sec) [ -71030.7455] [18175] [depth= 11] . ( 27 sec) [ -70917.2989] [18121] [depth= 3] . ( 27 sec) [ -70494.2289] [18051] [depth= 14] . ( 28 sec) [ -69508.2898] [17873] [depth= 17] . ( 28 sec) [ -69440.0935] [17890] [depth= 1] . ( 28 sec) [ -69360.5661] [17855] [depth= 12] . ( 28 sec) [ -68898.6496] [17762] [depth= 1] . ( 29 sec) [ -68883.5529] [17741] [depth= 1] . ( 29 sec) [ -68796.0768] [17688] [depth= 20] . ( 29 sec) [ -68756.6374] [17662] [depth= 4] . ( 30 sec) [ -68717.6972] [17648] [depth= 25] . ( 30 sec) [ -68609.0946] [17620] [depth= 1] . ( 30 sec) [ -68583.6322] [17648] [depth= 3] . ( 31 sec) [ -68408.3596] [17585] [depth= 4] . ( 31 sec) [ -68145.6896] [17505] [depth= 22] . ( 31 sec) [ -67740.9719] [17435] [depth= 9] . ( 32 sec) [ -67597.2130] [17360] [depth= 23] . ( 32 sec) [ -67474.3578] [17295] [depth= 3] . ( 32 sec) [ -67305.5331] [17217] [depth= 7] . ( 33 sec) [ -67247.8865] [17190] [depth= 1] . ( 33 sec) [ -66697.7783] [17061] [depth= 28] . ( 33 sec) [ -66363.4547] [17016] [depth= 3] . ( 34 sec) [ -66296.4048] [16988] [depth= 1] . ( 34 sec) [ -65817.6754] [16977] [depth= 14] . ( 34 sec) [ -65579.0561] [16911] [depth= 18] . ( 35 sec) [ -65404.7932] [16905] [depth= 1] . ( 35 sec) [ -65400.6558] [16915] [depth= 1] . ( 35 sec) [ -65234.8869] [16876] [depth= 7] . ( 36 sec) [ -65095.6632] [16856] [depth= 11] . ( 36 sec) [ -65015.8124] [16823] [depth= 14] . ( 36 sec) [ -65004.7803] [16830] [depth= 2] . ( 36 sec) [ -64972.7141] [16823] [depth= 1] . ( 37 sec) [ -64869.2776] [16811] [depth= 13] . ( 37 sec) [ -64828.1143] [16797] [depth= 5] . ( 37 sec) [ -64805.0582] [16793] [depth= 1] . ( 38 sec) [ -64804.0615] [16797] [depth= 1] . ( 38 sec) [ -64798.7047] [16793] [depth= 1] . ( 38 sec) [ -64592.8586] [16750] [depth= 13] . ( 39 sec) [ -64580.0283] [16731] [depth= 12] . ( 39 sec) [ -64403.9609] [16677] [depth= 13] . ( 39 sec) [ -64335.3936] [16658] [depth= 1] . ( 40 sec) [ -63906.8836] [16558] [depth= 8] . ( 40 sec) [ -63774.7080] [16495] [depth= 13] . ( 40 sec) [ -63718.8714] [16482] [depth= 1] . ( 40 sec) [ -63714.8913] [16477] [depth= 1] . ( 41 sec) [ -63609.1941] [16483] [depth= 1] . ( 41 sec) [ -63596.5682] [16482] [depth= 1] . ( 41 sec) [ -63559.0349] [16451] [depth= 18] . ( 42 sec) [ -63545.5763] [16430] [depth= 23] . ( 42 sec) [ -63400.0901] [16404] [depth= 12] . ( 42 sec) [ -63356.5746] [16403] [depth= 1] . ( 43 sec) [ -63175.4734] [16279] [depth= 22] . ( 43 sec) [ -63046.2409] [16253] [depth= 1] . ( 44 sec) [ -63013.0009] [16252] [depth= 1] . ( 44 sec) [ -62789.6876] [16248] [depth= 1] . ( 44 sec) [ -62776.8035] [16249] [depth= 3] . ( 45 sec) [ -62513.1125] [16222] [depth= 10] . ( 45 sec) [ -62418.0196] [16195] [depth= 11] . ( 45 sec) [ -62070.2799] [16172] [depth= 2] . ( 46 sec) [ -61770.6976] [16029] [depth= 13] . ( 46 sec) [ -61540.0285] [16027] [depth= 1] . ( 46 sec) [ -61518.6901] [16007] [depth= 1] . ( 46 sec) [ -61483.8869] [16029] [depth= 10] . ( 47 sec) [ -61477.9528] [16006] [depth= 11] . ( 47 sec) [ -61477.0080] [16010] [depth= 1] . ( 47 sec) [ -61414.1537] [15981] [depth= 24] . ( 48 sec) [ -61176.7959] [15932] [depth= 9] . ( 48 sec) [ -61170.3836] [15926] [depth= 1] . ( 48 sec) [ -60868.4588] [15926] [depth= 10] . ( 49 sec) [ -60700.4633] [15800] [depth= 7] . ( 49 sec) [ -60385.6083] [15683] [depth= 4] . ( 49 sec) [ -60384.8572] [15689] [depth= 1] . ( 50 sec) [ -60279.3383] [15668] [depth= 8] . ( 50 sec) [ -60044.0157] [15531] [depth= 9] . ( 50 sec) [ -59903.8930] [15500] [depth= 14] . ( 51 sec) [ -59836.6035] [15486] [depth= 2] . ( 51 sec) [ -59802.9525] [15472] [depth= 1] . ( 51 sec) [ -59749.2039] [15455] [depth= 5] . ( 51 sec) [ -59733.9051] [15452] [depth= 1] . ( 52 sec) [ -59474.0345] [15362] [depth= 17] . ( 52 sec) [ -59395.0209] [15342] [depth= 1] . ( 52 sec) [ -59189.6247] [15319] [depth= 10] . ( 53 sec) [ -59159.6426] [15316] [depth= 1] . ( 53 sec) [ -59155.1111] [15314] [depth= 1] . ( 53 sec) [ -59098.9661] [15303] [depth= 5] . ( 54 sec) [ -58942.9199] [15237] [depth= 7] . ( 54 sec) [ -58909.5008] [15231] [depth= 2] . ( 54 sec) [ -58892.7900] [15240] [depth= 1] . ( 55 sec) [ -58778.9641] [15209] [depth= 10] . ( 55 sec) [ -58701.9641] [15146] [depth= 11] . ( 56 sec) [ -58538.7917] [15123] [depth= 10] . ( 56 sec) [ -58457.9364] [15091] [depth= 1] . ( 56 sec) [ -58457.3683] [15073] [depth= 15] . ( 56 sec) [ -58411.2615] [15073] [depth= 1] . ( 57 sec) [ -58351.3982] [15027] [depth= 17] . ( 57 sec) [ -58291.7182] [15032] [depth= 1] . ( 57 sec) [ -58278.9501] [15015] [depth= 21] . ( 58 sec) [ -58106.4787] [14983] [depth= 5] . ( 58 sec) [ -58059.6615] [14984] [depth= 1] . ( 58 sec) [ -57967.4759] [14927] [depth= 15] . ( 59 sec) [ -57848.6594] [14880] [depth= 2] . ( 59 sec) [ -57703.8903] [14826] [depth= 2] . ( 60 sec) [ -57596.6653] [14832] [depth= 2] . ( 60 sec) [ -57585.4768] [14822] [depth= 3] . ( 60 sec) [ -57545.3665] [14803] [depth= 6] . ( 61 sec) [ -57519.1885] [14796] [depth= 6] . ( 61 sec) [ -57499.9244] [14796] [depth= 1] . ( 61 sec) [ -57446.6418] [14796] [depth= 1] . ( 61 sec) [ -57435.7823] [14798] [depth= 1] . ( 62 sec) [ -57383.1854] [14798] [depth= 1] . ( 62 sec) [ -57364.1243] [14770] [depth= 5] . ( 62 sec) [ -57350.2280] [14768] [depth= 2] . ( 63 sec) [ -57297.8154] [14763] [depth= 14] . ( 63 sec) [ -57137.2034] [14738] [depth= 24] . ( 63 sec) [ -57131.5113] [14738] [depth= 1] . ( 64 sec) [ -57083.6958] [14718] [depth= 22] . ( 64 sec) [ -56957.5821] [14698] [depth= 4] . ( 64 sec) [ -56861.5295] [14690] [depth= 1] . ( 65 sec) [ -56684.7730] [14694] [depth= 9] . ( 65 sec) [ -56668.2089] [14694] [depth= 17] . ( 65 sec) [ -56646.4562] [14693] [depth= 8] . ( 66 sec) [ -56636.2252] [14683] [depth= 16] . ( 66 sec) [ -56608.4466] [14683] [depth= 13] . ( 66 sec) [ -56537.9648] [14670] [depth= 3] . ( 67 sec) [ -56517.8783] [14632] [depth= 9] . ( 67 sec) [ -56467.1475] [14614] [depth= 2] . ( 67 sec) [ -56331.9697] [14544] [depth= 27] . ( 68 sec) [ -56011.4385] [14441] [depth= 8] . ( 68 sec) [ -55916.1774] [14423] [depth= 1] . ( 68 sec) [ -55376.4476] [14247] [depth= 20] . ( 69 sec) [ -55171.7029] [14214] [depth= 1] . ( 69 sec) [ -55024.0918] [14157] [depth= 14] . ( 69 sec) [ -54856.1678] [14119] [depth= 3] . ( 70 sec) [ -54299.0643] [14001] [depth= 2] . ( 70 sec) [ -54289.5441] [14002] [depth= 1] . ( 70 sec) [ -54232.3842] [13958] [depth= 5] . ( 70 sec) [ -54103.2052] [13969] [depth= 2] . ( 71 sec) [ -54057.2568] [13957] [depth= 1] . ( 71 sec) [ -54014.8233] [13925] [depth= 6] . ( 71 sec) [ -53880.4192] [13898] [depth= 2] . ( 72 sec) [ -53784.3716] [13868] [depth= 19] . ( 72 sec) [ -53759.3008] [13879] [depth= 1] . ( 72 sec) [ -53743.3078] [13888] [depth= 1] . ( 73 sec) [ -53726.6403] [13877] [depth= 2] . ( 73 sec) [ -53611.4184] [13799] [depth= 15] . ( 73 sec) [ -53544.3708] [13763] [depth= 17] . ( 74 sec) [ -53519.9338] [13748] [depth= 1] . ( 74 sec) [ -53517.2058] [13721] [depth= 8] . ( 75 sec) [ -53462.0242] [13716] [depth= 9] . ( 75 sec) [ -53461.2366] [13699] [depth= 3] . ( 75 sec) [ -53374.4550] [13687] [depth= 3] . ( 76 sec) [ -53238.5316] [13669] [depth= 1] . ( 76 sec) [ -53187.0110] [13648] [depth= 8] . ( 76 sec) [ -53093.4025] [13632] [depth= 9] . ( 77 sec) [ -53090.9719] [13636] [depth= 1] . ( 77 sec) [ -53086.0247] [13632] [depth= 1] . ( 77 sec) [ -53078.1402] [13637] [depth= 1] . ( 78 sec) [ -53070.8723] [13625] [depth= 16] . ( 78 sec) [ -53064.7625] [13624] [depth= 2] . ( 78 sec) [ -52979.3669] [13601] [depth= 2] . ( 78 sec) [ -52888.0537] [13596] [depth= 7] . ( 79 sec) [ -52886.3320] [13595] [depth= 1] . ( 79 sec) [ -52775.3266] [13563] [depth= 6] . ( 79 sec) [ -52769.9879] [13549] [depth= 2] . ( 80 sec) [ -52665.0321] [13503] [depth= 18] . ( 80 sec) [ -52660.6440] [13500] [depth= 1] . ( 80 sec) [ -52651.9047] [13497] [depth= 7] . ( 81 sec) [ -52550.6428] [13475] [depth= 11] . ( 81 sec) [ -52515.6691] [13472] [depth= 3] . ( 82 sec) [ -52507.7721] [13459] [depth= 1] . ( 82 sec) [ -52493.8272] [13465] [depth= 1] . ( 83 sec) [ -52367.8736] [13434] [depth= 5] . ( 83 sec) [ -52362.7848] [13434] [depth= 1] . ( 83 sec) [ -52039.6983] [13315] [depth= 13] . ( 83 sec) [ -52037.3319] [13314] [depth= 1] . ( 84 sec) [ -51970.9221] [13270] [depth= 3] . ( 84 sec) [ -51954.0475] [13270] [depth= 1] . ( 84 sec) [ -51944.6254] [13263] [depth= 1] . ( 85 sec) [ -51916.7840] [13249] [depth= 2] . ( 85 sec) [ -51911.6388] [13244] [depth= 1] . ( 85 sec) [ -51822.3096] [13212] [depth= 2] . ( 86 sec) [ -51777.4842] [13200] [depth= 2] . ( 87 sec) [ -51677.7188] [13177] [depth= 10] . ( 87 sec) [ -51592.3208] [13177] [depth= 1] . ( 87 sec) [ -51401.7301] [13096] [depth= 11] . ( 88 sec) [ -51346.1989] [13089] [depth= 1] . ( 88 sec) [ -51193.0150] [13016] [depth= 11] . ( 88 sec) [ -51168.0215] [13011] [depth= 1] . ( 89 sec) [ -51127.8450] [12985] [depth= 18] . ( 89 sec) [ -51100.4270] [12975] [depth= 1] . ( 89 sec) [ -51093.0369] [12974] [depth= 1] . ( 90 sec) [ -51009.1712] [12974] [depth= 1] . ( 90 sec) [ -50827.0726] [12927] [depth= 4] . ( 90 sec) [ -50804.4852] [12932] [depth= 2] . ( 91 sec) [ -50643.4035] [12901] [depth= 3] . ( 91 sec) [ -50614.0376] [12892] [depth= 3] . ( 91 sec) [ -50586.2419] [12904] [depth= 8] . ( 92 sec) [ -50533.6814] [12890] [depth= 1] . ( 92 sec) [ -50523.7472] [12883] [depth= 1] . ( 92 sec) [ -50496.9223] [12871] [depth= 1] . ( 92 sec) [ -50334.1650] [12818] [depth= 5] . ( 93 sec) [ -50311.5715] [12817] [depth= 2] . ( 93 sec) [ -50254.5727] [12816] [depth= 1] . ( 93 sec) [ -50252.3520] [12816] [depth= 1] . ( 94 sec) [ -50219.0085] [12808] [depth= 3] . ( 94 sec) [ -50208.9401] [12802] [depth= 4] . ( 94 sec) [ -50207.1750] [12801] [depth= 1] . ( 95 sec) [ -50077.6675] [12738] [depth= 3] . ( 95 sec) [ -50030.9482] [12734] [depth= 1] . ( 95 sec) [ -49931.8721] [12728] [depth= 1] . ( 96 sec) [ -49908.4660] [12709] [depth= 9] . ( 96 sec) [ -49904.7796] [12722] [depth= 1] . ( 97 sec) [ -49854.3029] [12714] [depth= 1] . ( 97 sec) [ -49774.4770] [12718] [depth= 3] . ( 98 sec) [ -49716.5094] [12700] [depth= 7] . ( 98 sec) [ -49704.7955] [12670] [depth= 1] . ( 99 sec) [ -49692.2638] [12665] [depth= 1] . ( 99 sec) [ -49589.5874] [12636] [depth= 12] . ( 99 sec) [ -49571.6058] [12624] [depth= 24] . ( 100 sec) [ -49564.2707] [12621] [depth= 1] . ( 100 sec) [ -49551.4069] [12615] [depth= 1] . ( 100 sec) [ -49506.3333] [12631] [depth= 1] . ( 101 sec) [ -49505.3613] [12632] [depth= 2] . ( 101 sec) [ -49245.9917] [12472] [depth= 15] . ( 102 sec) [ -49095.0864] [12472] [depth= 2] . ( 102 sec) [ -49094.0362] [12471] [depth= 3] . ( 103 sec) [ -49043.4817] [12461] [depth= 4] . ( 103 sec) [ -48998.9396] [12483] [depth= 5] . ( 103 sec) [ -48965.3902] [12477] [depth= 3] . ( 104 sec) [ -48918.3301] [12356] [depth= 2] . ( 104 sec) [ -48683.2240] [12292] [depth= 1] . ( 104 sec) [ -48623.0092] [12255] [depth= 4] . ( 105 sec) [ -48481.2406] [12217] [depth= 13] . ( 105 sec) [ -48468.8336] [12217] [depth= 1] . ( 106 sec) [ -48468.0611] [12215] [depth= 1] . ( 106 sec) [ -48466.2484] [12219] [depth= 1] . ( 107 sec) [ -48463.5776] [12223] [depth= 4] . ( 107 sec) [ -48460.7739] [12225] [depth= 2] . ( 109 sec) [ -47621.4918] [Branch lengths ] . ( 123 sec) [ -47234.2153] [GTR parameters ] . ( 124 sec) [ -47233.4766] [Alpha ][ 0.483869] . ( 125 sec) [ -47230.7369] [12226] [depth= 1] . ( 125 sec) [ -47225.8635] [12224] [depth= 4] . ( 125 sec) [ -47217.4516] [12216] [depth= 3] . ( 126 sec) [ -47214.6490] [12211] [depth= 1] . ( 126 sec) [ -47083.5501] [12124] [depth= 17] . ( 126 sec) [ -47079.4409] [12101] [depth= 4] . ( 127 sec) [ -47076.3175] [12100] [depth= 1] . ( 127 sec) [ -47071.1153] [12092] [depth= 1] . ( 128 sec) [ -47049.8396] [12073] [depth= 2] . ( 129 sec) [ -47047.9722] [12074] [depth= 1] . ( 129 sec) [ -47022.6417] [12055] [depth= 1] . ( 129 sec) [ -47019.6959] [12053] [depth= 3] . ( 130 sec) [ -47019.4284] [12053] [depth= 1] . ( 132 sec) [ -47014.6411] [12042] [depth= 2] . ( 132 sec) [ -47013.5753] [12043] [depth= 1] . ( 133 sec) [ -47012.4187] [12041] [depth= 2] . ( 133 sec) [ -46993.6910] [12034] [depth= 1] . ( 134 sec) [ -46983.6128] [12036] [depth= 1] . ( 134 sec) [ -46973.7739] [12031] [depth= 8] . ( 135 sec) [ -46973.1229] [12029] [depth= 1] . ( 135 sec) [ -46973.0491] [12032] [depth= 1] . ( 136 sec) [ -46972.8234] [12029] [depth= 1] . ( 136 sec) [ -46968.5123] [12028] [depth= 1] . ( 137 sec) [ -46958.4512] [12024] [depth= 2] . ( 138 sec) [ -46956.9090] [12025] [depth= 1] . ( 138 sec) [ -46951.4098] [12025] [depth= 3] . ( 138 sec) [ -46900.5647] [12019] [depth= 16] . ( 139 sec) [ -46882.2159] [12015] [depth= 4] . ( 140 sec) [ -46882.1207] [12014] [depth= 1] . ( 140 sec) [ -46878.3542] [12009] [depth= 1] . ( 141 sec) [ -46874.1728] [12014] [depth= 1] . ( 141 sec) [ -46874.0509] [12014] [depth= 1] . ( 142 sec) [ -46872.4291] [12013] [depth= 2] . ( 142 sec) [ -46838.3692] [12011] [depth= 1] . ( 143 sec) [ -46833.6457] [12011] [depth= 1] . ( 143 sec) [ -46832.1129] [12011] [depth= 1] . ( 144 sec) [ -46829.7340] [12015] [depth= 1] . ( 145 sec) [ -46812.7542] [12005] [depth= 3] . ( 146 sec) [ -46812.1320] [12006] [depth= 2] . ( 146 sec) [ -46735.5016] [11966] [depth= 16] . ( 147 sec) [ -46730.4399] [11959] [depth= 2] . ( 147 sec) [ -46723.9461] [11952] [depth= 1] . ( 148 sec) [ -46714.2681] [11943] [depth= 3] . ( 148 sec) [ -46705.0878] [11940] [depth= 1] . ( 148 sec) [ -46703.2745] [11941] [depth= 1] . ( 149 sec) [ -46702.9378] [11934] [depth= 4] . ( 149 sec) [ -46698.4360] [11939] [depth= 1] . ( 149 sec) [ -46697.9861] [11939] [depth= 1] . ( 150 sec) [ -46697.8389] [11940] [depth= 2] . ( 150 sec) [ -46688.0252] [11937] [depth= 1] . ( 152 sec) [ -46687.6244] [11940] [depth= 1] . ( 153 sec) [ -46653.0498] [11920] [depth= 10] . ( 154 sec) [ -46637.6330] [11921] [depth= 4] . ( 154 sec) [ -46619.5864] [11912] [depth= 1] . ( 155 sec) [ -46616.4238] [11913] [depth= 1] . ( 155 sec) [ -46616.0408] [11893] [depth= 1] . ( 155 sec) [ -46611.0303] [11887] [depth= 1] . ( 156 sec) [ -46610.9159] [11886] [depth= 2] . ( 156 sec) [ -46599.2758] [11880] [depth= 2] . ( 157 sec) [ -46597.6778] [11881] [depth= 1] . ( 158 sec) [ -46596.3656] [11880] [depth= 1] . ( 158 sec) [ -46591.5913] [11875] [depth= 1] . ( 159 sec) [ -46590.7195] [11875] [depth= 1] . ( 159 sec) [ -46573.7884] [11875] [depth= 1] . ( 160 sec) [ -46569.0949] [11873] [depth= 1] . ( 160 sec) [ -46568.2944] [11870] [depth= 2] . ( 161 sec) [ -46564.5386] [11874] [depth= 3] . ( 162 sec) [ -46556.2533] [11872] [depth= 1] . ( 163 sec) [ -46525.7806] [11862] [depth= 2] . ( 163 sec) [ -46506.1930] [11843] [depth= 3] . ( 164 sec) [ -46481.5950] [11845] [depth= 1] . ( 165 sec) [ -46444.9571] [11843] [depth= 5] . ( 166 sec) [ -46444.5280] [11834] [depth= 3] . ( 169 sec) [ -46444.3602] [11834] [depth= 1] . ( 171 sec) [ -46443.8098] [11835] [depth= 1] . ( 171 sec) [ -46442.4113] [11842] [depth= 1] . ( 172 sec) [ -46429.9386] [11829] [depth= 4] . ( 173 sec) [ -46427.9045] [11827] [depth= 1] . ( 174 sec) [ -46427.0649] [11819] [depth= 1] . ( 174 sec) [ -46425.3121] [11815] [depth= 2] . ( 176 sec) [ -46422.2144] [11815] [depth= 1] . ( 176 sec) [ -46419.6570] [11818] [depth= 1] . ( 176 sec) [ -46417.8149] [11818] [depth= 1] . ( 177 sec) [ -46413.5317] [11814] [depth= 1] . ( 177 sec) [ -46411.5297] [11815] [depth= 1] . ( 178 sec) [ -46406.0269] [11816] [depth= 1] . ( 179 sec) [ -46405.5603] [11818] [depth= 1] . ( 179 sec) [ -46404.8493] [11819] [depth= 1] . ( 180 sec) [ -46404.6033] [11819] [depth= 1] . ( 181 sec) [ -46399.7802] [11821] [depth= 1] . ( 183 sec) [ -46398.6571] [11820] [depth= 1] . ( 183 sec) [ -46396.3236] [11820] [depth= 3] . ( 183 sec) [ -46395.8414] [11819] [depth= 1] . ( 184 sec) [ -46393.7589] [11823] [depth= 1] . ( 185 sec) [ -46393.0343] [11823] [depth= 1] . ( 185 sec) [ -46386.0157] [11822] [depth= 3] . ( 186 sec) [ -46385.2792] [11822] [depth= 1] . ( 186 sec) [ -46384.3371] [11824] [depth= 1] . ( 187 sec) [ -46384.3006] [11823] [depth= 1] . ( 187 sec) [ -46384.2857] [11824] [depth= 1] . ( 189 sec) [ -46383.3850] [11821] [depth= 1] . ( 191 sec) [ -46383.3564] [11820] [depth= 1] . ( 193 sec) [ -46382.4150] [11820] [depth= 1] . ( 193 sec) [ -46382.2047] [11818] [depth= 1] . ( 194 sec) [ -46382.1572] [11822] [depth= 2] . ( 197 sec) [ -46289.7380] [11754] [depth= 12] . ( 197 sec) [ -46288.2018] [11754] [depth= 2] . ( 200 sec) [ -46283.9212] [11753] [depth= 1] . ( 202 sec) [ -46129.6205] [Branch lengths ] . ( 210 sec) [ -46125.1135] [GTR parameters ] . ( 211 sec) [ -46122.8645] [Alpha ][ 0.511668] . ( 211 sec) [ -46121.8585] [11757] [depth= 1] . ( 213 sec) [ -46121.0021] [11756] [depth= 2] . ( 213 sec) [ -46120.2900] [11752] [depth= 2] . ( 215 sec) [ -46120.2676] [11752] [depth= 1] . ( 218 sec) [ -46112.0625] [11734] [depth= 1] . ( 219 sec) [ -46111.9054] [11738] [depth= 1] . ( 219 sec) [ -46107.6695] [11740] [depth= 1] . ( 222 sec) [ -46107.4561] [11739] [depth= 1] . ( 223 sec) [ -46106.7195] [11740] [depth= 1] . ( 226 sec) [ -46106.3524] [11745] [depth= 1] . ( 228 sec) [ -46086.6398] [11755] [depth= 1] . ( 229 sec) [ -46086.0206] [11748] [depth= 6] . ( 230 sec) [ -46084.3995] [11750] [depth= 1] . ( 230 sec) [ -46082.8387] [11747] [depth= 1] . ( 233 sec) [ -46080.7495] [11741] [depth= 1] . ( 235 sec) [ -46080.1826] [11744] [depth= 2] . ( 237 sec) [ -46079.7089] [11740] [depth= 1] . ( 241 sec) [ -46079.6630] [11741] [depth= 1] . ( 243 sec) [ -46078.0577] [11740] [depth= 1] . ( 244 sec) [ -46077.6064] [11742] [depth= 1] . ( 244 sec) [ -46077.5672] [11737] [depth= 1] . ( 245 sec) [ -46076.3285] [11742] [depth= 1] . ( 248 sec) [ -46076.1674] [11744] [depth= 3] . ( 250 sec) [ -46075.7919] [11737] [depth= 1] . ( 250 sec) [ -46066.8957] [11736] [depth= 4] . ( 251 sec) [ -46066.3205] [11733] [depth= 1] . ( 253 sec) [ -46066.2552] [11733] [depth= 1] . ( 253 sec) [ -46065.9049] [11733] [depth= 1] . ( 254 sec) [ -46064.9023] [11733] [depth= 1] . ( 254 sec) [ -46060.0370] [11733] [depth= 1] . ( 258 sec) [ -46060.0009] [11731] [depth= 4] . ( 266 sec) [ -46059.7238] [11730] [depth= 1] . ( 267 sec) [ -46057.8568] [11734] [depth= 2] . ( 267 sec) [ -46057.8180] [11734] [depth= 1] . ( 269 sec) [ -46056.6358] [11738] [depth= 2] . ( 273 sec) [ -46054.8078] [11733] [depth= 1] . ( 275 sec) [ -46054.3327] [11733] [depth= 1] . ( 279 sec) [ -46053.7877] [11739] [depth= 1] . ( 282 sec) [ -46053.6677] [11739] [depth= 1] . ( 286 sec) [ -46011.0664] [Branch lengths ] . ( 294 sec) [ -46010.6391] [GTR parameters ] . ( 294 sec) [ -46010.1504] [Alpha ][ 0.524363] . ( 299 sec) [ -46010.0446] [11739] [depth= 1] . ( 309 sec) [ -46009.3395] [11738] [depth= 1] . ( 311 sec) [ -45953.0113] [11726] [depth= 6] . ( 311 sec) [ -45944.4337] [11724] [depth= 1] . ( 315 sec) [ -45944.3279] [11725] [depth= 1] . ( 315 sec) [ -45944.0190] [11729] [depth= 2] . ( 332 sec) [ -45943.0322] [11731] [depth= 3] . ( 335 sec) [ -45943.0111] [11731] [depth= 1] . ( 336 sec) [ -45942.9760] [11731] [depth= 1] . ( 340 sec) [ -45941.9436] [11731] [depth= 1] . ( 350 sec) [ -45941.9114] [11731] [depth= 1] . ( 362 sec) [ -45941.6882] [11737] [depth= 1] . ( 368 sec) [ -45922.6124] [Branch lengths ] . ( 376 sec) [ -45922.3014] [GTR parameters ] . ( 376 sec) [ -45922.2443] [Alpha ][ 0.528572] . ( 378 sec) [ -45921.7740] [11733] [depth= 1] . ( 380 sec) [ -45921.4107] [11727] [depth= 1] . ( 381 sec) [ -45921.3754] [11727] [depth= 1] . ( 397 sec) [ -45921.2933] [11716] [depth= 1] . ( 401 sec) [ -45921.2547] [11716] [depth= 1] . ( 412 sec) [ -45921.1539] [11716] [depth= 1] . ( 441 sec) [ -45920.9884] [11716] [depth= 1] . ( 445 sec) [ -45920.8162] [11723] [depth= 1] . ( 450 sec) [ -45913.4601] [Branch lengths ] . ( 457 sec) [ -45913.2686] [GTR parameters ] . ( 457 sec) [ -45913.2478] [Alpha ][ 0.531038] . ( 461 sec) [ -45912.9611] [11734] [depth= 2] . ( 476 sec) [ -45911.5623] [11735] [depth= 1] . ( 493 sec) [ -45911.5185] [11735] [depth= 1] . ( 497 sec) [ -45911.5081] [11735] [depth= 1] . ( 501 sec) [ -45911.4485] [11738] [depth= 2] . ( 529 sec) [ -45906.1363] [Branch lengths ] . ( 536 sec) [ -45906.0218] [GTR parameters ] . ( 537 sec) [ -45906.0213] [Alpha ][ 0.531569] . ( 542 sec) [ -45906.0023] [11738] [depth= 1] . ( 553 sec) [ -45903.4269] [11736] [depth= 2] . ( 559 sec) [ -45902.7952] [11749] [depth= 1] . ( 619 sec) [ -45899.2194] [Branch lengths ] . ( 626 sec) [ -45899.1402] [GTR parameters ] . ( 627 sec) [ -45899.1374] [Alpha ][ 0.530687] . ( 631 sec) [ -45899.1243] [11749] [depth= 1] . ( 688 sec) [ -45898.6642] [11754] [depth= 1] . ( 707 sec) [ -45897.4238] [Branch lengths ] . ( 714 sec) [ -45897.3909] [GTR parameters ] . ( 714 sec) [ -45897.3909] [Alpha ][ 0.530687] . ( 797 sec) [ -45896.9987] [Branch lengths ] . ( 822 sec) [ -45896.2076] [11790] [depth= 1] . ( 855 sec) [ -45882.3078] [11825] [depth= 1] . ( 873 sec) [ -45882.2501] [11824] [depth= 1] . ( 999 sec) [ -45880.3337] [11815] [depth= 1] . ( 1000 sec) [ -45878.8169] [11843] [depth= 4] . ( 1038 sec) [ -45876.0950] [11840] [depth= 1] . ( 1054 sec) [ -45873.2995] [Branch lengths ] . ( 1056 sec) [ -45873.1392] [GTR parameters ] . ( 1057 sec) [ -45873.1247] [Alpha ][ 0.532635] . ( 1082 sec) [ -45871.4472] [11877] [depth= 1] . ( 1117 sec) [ -45871.3356] [11877] [depth= 1] . ( 1200 sec) [ -45870.2461] [11869] [depth= 1] . ( 1261 sec) [ -45868.7523] [11870] [depth= 1] . ( 1314 sec) [ -45867.7002] [Branch lengths ] . ( 1322 sec) [ -45867.6914] [GTR parameters ] . ( 1323 sec) [ -45867.6629] [Alpha ][ 0.535253] . ( 1581 sec) [ -45867.5228] [Branch lengths ] . ( 1581 sec) [ -45867.5228] [Topology ] . ( 1587 sec) [ -45867.3530] [Topology ] . ( 1592 sec) [ -45866.5737] [Topology ] . ( 1598 sec) [ -45866.4417] [Topology ] . ( 1603 sec) [ -45866.3921] [Topology ] . ( 1609 sec) [ -45866.3689] [Topology ] . ( 1615 sec) [ -45866.3562] [Topology ] . ( 1620 sec) [ -45866.3483] [Topology ] . ( 1623 sec) [ -45866.3438] [GTR parameters ] . ( 1623 sec) [ -45866.3438] [Alpha ][ 0.535253] . ( 1623 sec) [ -45866.3438] [Topology ] . ( 1629 sec) [ -45866.3374] [Topology ] . ( 1635 sec) [ -45866.3328] [Topology ] . ( 1640 sec) [ -45866.3293] [Topology ] . ( 1646 sec) [ -45866.3266] [Topology ] . ( 1651 sec) [ -45866.3243] [Topology ] . ( 1657 sec) [ -45866.3225] [Topology ] . ( 1660 sec) [ -45866.3219] [GTR parameters ] . ( 1660 sec) [ -45866.3219] [Alpha ][ 0.535253] . ( 1660 sec) [ -45866.3219] [Topology ] . ( 1666 sec) [ -45866.3201] [Topology ] . ( 1672 sec) [ -45866.3186] [Topology ] . ( 1677 sec) [ -45866.3173] [Topology ] . ( 1683 sec) [ -45866.3161] [Topology ] . ( 1689 sec) [ -45866.3151] [Topology ] . ( 1694 sec) [ -45866.3141] [Topology ] . ( 1695 sec) [ -45866.3141] [GTR parameters ] . ( 1696 sec) [ -45866.3141] [Alpha ][ 0.535253] . ( 1696 sec) [ -45866.3141] [Topology ] . ( 1701 sec) [ -45866.3132] [Topology ] . ( 1705 sec) [ -45866.3130] [GTR parameters ] . ( 1706 sec) [ -45866.3130] [Alpha ][ 0.535253] . ( 1706 sec) [ -45866.3130] [Topology ] . ( 1711 sec) [ -45866.3121] [Topology ] . ( 1714 sec) [ -45866.3121] [GTR parameters ] . ( 1714 sec) [ -45866.3121] [Alpha ][ 0.535253] . Checking for NNIs, optimizing five branches... . ( 1766 sec) [ -45865.9280] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1819 sec) [ -45865.3160] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1871 sec) [ -45864.9731] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1924 sec) [ -45864.7338] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1977 sec) [ -45864.6751] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -45864.675056. . [Random start 4/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 15 sec) [ -92367.5478] [GTR parameters ] . ( 16 sec) [ -90206.9690] [Alpha ][ 0.500960] . ( 16 sec) [ -89985.9921] [21426] [depth= 6] . ( 16 sec) [ -89875.9071] [21402] [depth= 2] . ( 17 sec) [ -89665.0193] [21355] [depth= 13] . ( 17 sec) [ -89643.4211] [21354] [depth= 1] . ( 17 sec) [ -89492.9357] [21312] [depth= 13] . ( 17 sec) [ -89476.3318] [21313] [depth= 1] . ( 18 sec) [ -89053.0735] [21249] [depth= 16] . ( 18 sec) [ -89027.2174] [21176] [depth= 3] . ( 18 sec) [ -88095.9750] [21086] [depth= 17] . ( 19 sec) [ -88092.4332] [21087] [depth= 1] . ( 19 sec) [ -87970.6095] [21069] [depth= 6] . ( 19 sec) [ -87891.5862] [21048] [depth= 2] . ( 19 sec) [ -87285.2252] [21030] [depth= 6] . ( 20 sec) [ -87249.2197] [21022] [depth= 1] . ( 20 sec) [ -87141.8687] [21007] [depth= 9] . ( 20 sec) [ -86913.0870] [20959] [depth= 4] . ( 20 sec) [ -86758.7569] [20928] [depth= 13] . ( 21 sec) [ -86747.6950] [20924] [depth= 2] . ( 21 sec) [ -86697.6575] [20889] [depth= 10] . ( 21 sec) [ -86615.7307] [20830] [depth= 1] . ( 22 sec) [ -86476.7442] [20817] [depth= 12] . ( 22 sec) [ -86378.9694] [20797] [depth= 6] . ( 22 sec) [ -86203.0485] [20759] [depth= 3] . ( 22 sec) [ -85967.1516] [20682] [depth= 15] . ( 23 sec) [ -85902.0290] [20634] [depth= 1] . ( 23 sec) [ -85829.1897] [20615] [depth= 1] . ( 23 sec) [ -85731.0638] [20568] [depth= 14] . ( 23 sec) [ -85491.0086] [20533] [depth= 1] . ( 24 sec) [ -85129.8890] [20506] [depth= 1] . ( 24 sec) [ -83651.6800] [20435] [depth= 26] . ( 24 sec) [ -83102.8511] [20270] [depth= 7] . ( 25 sec) [ -82971.7872] [20236] [depth= 13] . ( 25 sec) [ -82170.1546] [20231] [depth= 1] . ( 25 sec) [ -81568.7477] [20114] [depth= 17] . ( 26 sec) [ -80975.8623] [20031] [depth= 18] . ( 26 sec) [ -80907.8577] [20018] [depth= 3] . ( 26 sec) [ -80870.4920] [20010] [depth= 2] . ( 26 sec) [ -80069.5064] [19981] [depth= 1] . ( 27 sec) [ -79725.6726] [19940] [depth= 2] . ( 27 sec) [ -79573.7664] [19946] [depth= 1] . ( 27 sec) [ -79132.5819] [19717] [depth= 25] . ( 28 sec) [ -79019.1189] [19705] [depth= 1] . ( 28 sec) [ -78496.4094] [19611] [depth= 19] . ( 28 sec) [ -78230.5204] [19547] [depth= 17] . ( 29 sec) [ -77994.9467] [19490] [depth= 6] . ( 29 sec) [ -77763.2747] [19421] [depth= 22] . ( 29 sec) [ -77472.7109] [19410] [depth= 13] . ( 30 sec) [ -77434.7334] [19397] [depth= 1] . ( 30 sec) [ -77316.7030] [19315] [depth= 13] . ( 30 sec) [ -77232.9489] [19279] [depth= 1] . ( 31 sec) [ -77226.1570] [19237] [depth= 14] . ( 31 sec) [ -77017.4583] [19219] [depth= 1] . ( 31 sec) [ -76490.9129] [19213] [depth= 2] . ( 31 sec) [ -76139.5464] [19164] [depth= 11] . ( 32 sec) [ -76064.2124] [19104] [depth= 1] . ( 32 sec) [ -75922.7649] [19086] [depth= 11] . ( 32 sec) [ -75263.2959] [19008] [depth= 3] . ( 33 sec) [ -75227.0564] [18957] [depth= 10] . ( 33 sec) [ -75134.1966] [18997] [depth= 1] . ( 33 sec) [ -74763.4708] [18977] [depth= 25] . ( 33 sec) [ -74713.5308] [18970] [depth= 2] . ( 34 sec) [ -74582.4348] [18940] [depth= 7] . ( 34 sec) [ -74394.8467] [18840] [depth= 1] . ( 34 sec) [ -74380.9114] [18817] [depth= 1] . ( 35 sec) [ -74106.2795] [18725] [depth= 25] . ( 35 sec) [ -74035.9991] [18706] [depth= 14] . ( 35 sec) [ -73483.1061] [18673] [depth= 4] . ( 36 sec) [ -73476.9046] [18691] [depth= 1] . ( 36 sec) [ -73089.1704] [18595] [depth= 8] . ( 36 sec) [ -73006.5932] [18577] [depth= 12] . ( 36 sec) [ -73000.0202] [18570] [depth= 3] . ( 37 sec) [ -72984.4032] [18561] [depth= 13] . ( 37 sec) [ -72700.7108] [18456] [depth= 19] . ( 37 sec) [ -72589.7632] [18425] [depth= 4] . ( 38 sec) [ -72468.7934] [18389] [depth= 1] . ( 38 sec) [ -72455.2855] [18359] [depth= 22] . ( 38 sec) [ -72272.5004] [18347] [depth= 3] . ( 38 sec) [ -71792.9259] [18329] [depth= 3] . ( 39 sec) [ -70913.1266] [18272] [depth= 2] . ( 39 sec) [ -70841.4252] [18264] [depth= 1] . ( 39 sec) [ -70822.0848] [18258] [depth= 2] . ( 39 sec) [ -70679.7038] [18210] [depth= 29] . ( 40 sec) [ -70590.0906] [18189] [depth= 10] . ( 40 sec) [ -70589.7171] [18189] [depth= 1] . ( 40 sec) [ -70287.3123] [18097] [depth= 12] . ( 41 sec) [ -70082.2377] [18057] [depth= 32] . ( 41 sec) [ -69633.9923] [17843] [depth= 19] . ( 41 sec) [ -69627.3559] [17843] [depth= 1] . ( 42 sec) [ -69424.7764] [17754] [depth= 25] . ( 42 sec) [ -69416.5084] [17759] [depth= 1] . ( 42 sec) [ -69313.6383] [17734] [depth= 28] . ( 43 sec) [ -68325.4633] [17638] [depth= 9] . ( 43 sec) [ -68205.6402] [17610] [depth= 26] . ( 43 sec) [ -68113.1162] [17607] [depth= 2] . ( 44 sec) [ -68021.5352] [17584] [depth= 25] . ( 44 sec) [ -67978.8560] [17550] [depth= 11] . ( 44 sec) [ -67429.1684] [17470] [depth= 10] . ( 45 sec) [ -67417.7357] [17463] [depth= 1] . ( 45 sec) [ -67361.5095] [17419] [depth= 14] . ( 45 sec) [ -66976.7723] [17262] [depth= 2] . ( 46 sec) [ -66631.4777] [17231] [depth= 3] . ( 46 sec) [ -66579.1322] [17221] [depth= 1] . ( 46 sec) [ -66554.3566] [17204] [depth= 1] . ( 47 sec) [ -66421.3161] [17145] [depth= 8] . ( 47 sec) [ -66191.1588] [17098] [depth= 23] . ( 47 sec) [ -65604.8786] [17032] [depth= 7] . ( 48 sec) [ -65371.3949] [16889] [depth= 8] . ( 48 sec) [ -64995.3097] [16870] [depth= 1] . ( 48 sec) [ -64932.4778] [16820] [depth= 1] . ( 49 sec) [ -64640.4194] [16647] [depth= 11] . ( 49 sec) [ -64483.1194] [16540] [depth= 9] . ( 49 sec) [ -64260.9090] [16506] [depth= 4] . ( 49 sec) [ -64230.9875] [16506] [depth= 1] . ( 50 sec) [ -64199.0858] [16494] [depth= 1] . ( 50 sec) [ -64189.3189] [16508] [depth= 1] . ( 50 sec) [ -64178.2650] [16494] [depth= 15] . ( 51 sec) [ -64115.7345] [16370] [depth= 8] . ( 51 sec) [ -63827.3436] [16344] [depth= 14] . ( 51 sec) [ -63730.4248] [16342] [depth= 2] . ( 52 sec) [ -63626.4756] [16318] [depth= 12] . ( 52 sec) [ -63458.0967] [16278] [depth= 9] . ( 52 sec) [ -63444.1967] [16253] [depth= 3] . ( 52 sec) [ -63271.0016] [16152] [depth= 11] . ( 53 sec) [ -62830.2318] [16110] [depth= 2] . ( 53 sec) [ -62176.7446] [15985] [depth= 3] . ( 53 sec) [ -62084.4988] [15985] [depth= 1] . ( 54 sec) [ -62040.3839] [15924] [depth= 19] . ( 54 sec) [ -62031.4759] [15920] [depth= 1] . ( 54 sec) [ -61841.7324] [15884] [depth= 8] . ( 54 sec) [ -61417.4602] [15866] [depth= 2] . ( 55 sec) [ -61194.6359] [15761] [depth= 7] . ( 55 sec) [ -61103.8273] [15763] [depth= 1] . ( 55 sec) [ -60981.4929] [15688] [depth= 5] . ( 56 sec) [ -60892.3677] [15642] [depth= 16] . ( 56 sec) [ -60734.3919] [15572] [depth= 6] . ( 56 sec) [ -60638.1810] [15457] [depth= 2] . ( 57 sec) [ -60604.0457] [15433] [depth= 4] . ( 57 sec) [ -60576.4211] [15420] [depth= 1] . ( 57 sec) [ -60492.5706] [15371] [depth= 11] . ( 58 sec) [ -60437.6736] [15371] [depth= 1] . ( 58 sec) [ -60211.9861] [15322] [depth= 6] . ( 58 sec) [ -59987.7900] [15212] [depth= 21] . ( 59 sec) [ -59935.9839] [15207] [depth= 2] . ( 59 sec) [ -59533.5659] [15100] [depth= 12] . ( 59 sec) [ -59481.4153] [15080] [depth= 3] . ( 60 sec) [ -59443.2576] [15075] [depth= 19] . ( 60 sec) [ -59433.0512] [15072] [depth= 1] . ( 60 sec) [ -59315.2131] [15040] [depth= 14] . ( 61 sec) [ -59107.3422] [14970] [depth= 8] . ( 61 sec) [ -59105.2144] [14970] [depth= 1] . ( 61 sec) [ -58988.9051] [14939] [depth= 13] . ( 62 sec) [ -58899.8055] [14911] [depth= 6] . ( 62 sec) [ -58717.5516] [14855] [depth= 4] . ( 62 sec) [ -58712.5840] [14849] [depth= 3] . ( 63 sec) [ -58671.0576] [14850] [depth= 12] . ( 63 sec) [ -58650.6257] [14862] [depth= 6] . ( 63 sec) [ -58541.2357] [14850] [depth= 11] . ( 64 sec) [ -58501.9164] [14828] [depth= 1] . ( 64 sec) [ -58501.3562] [14828] [depth= 1] . ( 64 sec) [ -58476.6315] [14827] [depth= 1] . ( 65 sec) [ -58456.2886] [14829] [depth= 1] . ( 65 sec) [ -58286.7815] [14720] [depth= 16] . ( 65 sec) [ -57995.5180] [14690] [depth= 3] . ( 66 sec) [ -57963.1018] [14672] [depth= 1] . ( 66 sec) [ -57923.3540] [14656] [depth= 1] . ( 66 sec) [ -57826.0632] [14650] [depth= 7] . ( 67 sec) [ -57748.0597] [14619] [depth= 11] . ( 67 sec) [ -57673.4963] [14607] [depth= 1] . ( 67 sec) [ -57577.1633] [14551] [depth= 10] . ( 67 sec) [ -57311.3344] [14554] [depth= 1] . ( 68 sec) [ -56919.5509] [14536] [depth= 13] . ( 68 sec) [ -56915.2546] [14492] [depth= 2] . ( 69 sec) [ -56821.0600] [14485] [depth= 1] . ( 69 sec) [ -56741.5054] [14480] [depth= 1] . ( 69 sec) [ -56717.2468] [14503] [depth= 9] . ( 69 sec) [ -56450.2199] [14493] [depth= 1] . ( 70 sec) [ -56330.8606] [14471] [depth= 14] . ( 70 sec) [ -56264.4458] [14437] [depth= 10] . ( 70 sec) [ -56163.9125] [14379] [depth= 6] . ( 71 sec) [ -56060.1114] [14377] [depth= 1] . ( 71 sec) [ -56055.6855] [14382] [depth= 1] . ( 72 sec) [ -55997.4393] [14359] [depth= 2] . ( 72 sec) [ -55991.0836] [14354] [depth= 11] . ( 72 sec) [ -55812.2159] [14312] [depth= 10] . ( 73 sec) [ -55723.3653] [14271] [depth= 1] . ( 73 sec) [ -55715.0814] [14266] [depth= 1] . ( 73 sec) [ -55709.4812] [14255] [depth= 5] . ( 73 sec) [ -55673.6347] [14254] [depth= 1] . ( 74 sec) [ -55547.7591] [14222] [depth= 8] . ( 74 sec) [ -55498.8401] [14208] [depth= 4] . ( 74 sec) [ -55360.7292] [14156] [depth= 8] . ( 75 sec) [ -55015.7197] [14139] [depth= 4] . ( 75 sec) [ -54895.1899] [14136] [depth= 2] . ( 75 sec) [ -54610.3497] [13963] [depth= 16] . ( 75 sec) [ -54574.0711] [13965] [depth= 1] . ( 76 sec) [ -54551.0723] [13956] [depth= 16] . ( 76 sec) [ -54426.5585] [13952] [depth= 4] . ( 76 sec) [ -54404.0224] [13949] [depth= 4] . ( 77 sec) [ -54341.3700] [13918] [depth= 11] . ( 77 sec) [ -54328.6470] [13909] [depth= 1] . ( 77 sec) [ -54250.4358] [13980] [depth= 12] . ( 78 sec) [ -54218.7021] [13956] [depth= 10] . ( 78 sec) [ -54208.0434] [14016] [depth= 1] . ( 78 sec) [ -54207.2305] [14016] [depth= 1] . ( 78 sec) [ -54186.7105] [14017] [depth= 2] . ( 79 sec) [ -54092.8698] [13949] [depth= 18] . ( 79 sec) [ -54054.4619] [13948] [depth= 14] . ( 79 sec) [ -54025.6918] [13942] [depth= 4] . ( 80 sec) [ -53980.0049] [13882] [depth= 1] . ( 80 sec) [ -53874.0002] [13886] [depth= 16] . ( 80 sec) [ -53865.7460] [13881] [depth= 2] . ( 81 sec) [ -53741.7991] [13859] [depth= 1] . ( 81 sec) [ -53723.0332] [13844] [depth= 4] . ( 81 sec) [ -53710.1143] [13853] [depth= 1] . ( 82 sec) [ -53687.1848] [13844] [depth= 1] . ( 82 sec) [ -53593.4953] [13832] [depth= 4] . ( 82 sec) [ -53447.0420] [13835] [depth= 3] . ( 83 sec) [ -53074.6373] [13829] [depth= 1] . ( 83 sec) [ -52842.2490] [13720] [depth= 13] . ( 84 sec) [ -52699.3357] [13714] [depth= 1] . ( 84 sec) [ -52665.5366] [13711] [depth= 8] . ( 84 sec) [ -52550.6100] [13690] [depth= 14] . ( 84 sec) [ -52416.4747] [13662] [depth= 4] . ( 85 sec) [ -52308.4833] [13649] [depth= 12] . ( 85 sec) [ -52289.4773] [13641] [depth= 1] . ( 85 sec) [ -52091.3423] [13567] [depth= 19] . ( 86 sec) [ -52004.6257] [13550] [depth= 2] . ( 86 sec) [ -52001.5317] [13551] [depth= 1] . ( 86 sec) [ -51995.3817] [13556] [depth= 2] . ( 87 sec) [ -51978.5122] [13559] [depth= 1] . ( 88 sec) [ -51978.4774] [13563] [depth= 3] . ( 88 sec) [ -51857.9500] [13537] [depth= 2] . ( 88 sec) [ -51847.0780] [13507] [depth= 1] . ( 89 sec) [ -51769.3764] [13480] [depth= 22] . ( 89 sec) [ -51763.7496] [13482] [depth= 1] . ( 89 sec) [ -51761.0742] [13484] [depth= 2] . ( 90 sec) [ -51757.2745] [13488] [depth= 2] . ( 90 sec) [ -51723.1632] [13488] [depth= 1] . ( 90 sec) [ -51718.1154] [13486] [depth= 1] . ( 91 sec) [ -51711.3357] [13486] [depth= 2] . ( 91 sec) [ -51671.7671] [13484] [depth= 2] . ( 91 sec) [ -51661.3332] [13476] [depth= 1] . ( 92 sec) [ -51638.8189] [13470] [depth= 1] . ( 92 sec) [ -51606.8935] [13458] [depth= 2] . ( 92 sec) [ -51602.5187] [13445] [depth= 7] . ( 92 sec) [ -51594.6874] [13448] [depth= 2] . ( 93 sec) [ -51502.7572] [13429] [depth= 4] . ( 93 sec) [ -51481.2787] [13403] [depth= 4] . ( 93 sec) [ -51469.7712] [13368] [depth= 1] . ( 94 sec) [ -51334.9431] [13340] [depth= 3] . ( 94 sec) [ -51290.4951] [13327] [depth= 11] . ( 94 sec) [ -51278.2180] [13325] [depth= 1] . ( 95 sec) [ -51275.5050] [13305] [depth= 6] . ( 95 sec) [ -51228.8372] [13288] [depth= 1] . ( 95 sec) [ -51198.5037] [13291] [depth= 6] . ( 95 sec) [ -51198.2694] [13291] [depth= 1] . ( 96 sec) [ -51110.5462] [13285] [depth= 8] . ( 96 sec) [ -51054.8246] [13262] [depth= 18] . ( 96 sec) [ -51051.0025] [13262] [depth= 1] . ( 97 sec) [ -50991.5220] [13231] [depth= 13] . ( 97 sec) [ -50990.8998] [13228] [depth= 1] . ( 97 sec) [ -50980.8232] [13223] [depth= 1] . ( 98 sec) [ -50942.8909] [13215] [depth= 1] . ( 98 sec) [ -50826.1614] [13165] [depth= 2] . ( 98 sec) [ -50816.6895] [13160] [depth= 2] . ( 99 sec) [ -50788.5295] [13120] [depth= 8] . ( 99 sec) [ -50787.0501] [13124] [depth= 1] . ( 100 sec) [ -50781.0272] [13032] [depth= 18] . ( 100 sec) [ -50766.9774] [13004] [depth= 4] . ( 101 sec) [ -50674.5938] [13003] [depth= 1] . ( 101 sec) [ -50610.1804] [12963] [depth= 19] . ( 101 sec) [ -50608.5452] [12964] [depth= 1] . ( 102 sec) [ -50592.7493] [12963] [depth= 1] . ( 102 sec) [ -50586.2552] [12960] [depth= 1] . ( 102 sec) [ -50578.1426] [12957] [depth= 2] . ( 103 sec) [ -50574.7116] [12950] [depth= 7] . ( 103 sec) [ -50558.0007] [12948] [depth= 1] . ( 103 sec) [ -50549.6554] [12941] [depth= 3] . ( 104 sec) [ -50525.9010] [12931] [depth= 4] . ( 104 sec) [ -50453.2882] [12896] [depth= 6] . ( 104 sec) [ -49961.8304] [12700] [depth= 2] . ( 105 sec) [ -49926.2047] [12690] [depth= 8] . ( 105 sec) [ -49919.4043] [12682] [depth= 2] . ( 106 sec) [ -49904.1118] [12683] [depth= 1] . ( 106 sec) [ -49720.0238] [12595] [depth= 3] . ( 106 sec) [ -49719.6066] [12590] [depth= 1] . ( 107 sec) [ -49584.9227] [12544] [depth= 3] . ( 107 sec) [ -49546.7372] [12539] [depth= 2] . ( 107 sec) [ -49539.3727] [12533] [depth= 1] . ( 108 sec) [ -49535.9610] [12525] [depth= 3] . ( 108 sec) [ -49480.3407] [12502] [depth= 1] . ( 109 sec) [ -49476.8521] [12502] [depth= 1] . ( 109 sec) [ -49441.1962] [12491] [depth= 2] . ( 109 sec) [ -49440.7773] [12491] [depth= 7] . ( 109 sec) [ -49399.8294] [12456] [depth= 4] . ( 110 sec) [ -49364.4134] [12447] [depth= 1] . ( 110 sec) [ -49218.8721] [12394] [depth= 1] . ( 110 sec) [ -49213.7513] [12390] [depth= 2] . ( 111 sec) [ -49213.4449] [12391] [depth= 1] . ( 112 sec) [ -49119.0010] [12340] [depth= 17] . ( 112 sec) [ -49109.0573] [12336] [depth= 1] . ( 112 sec) [ -49091.3118] [12333] [depth= 2] . ( 113 sec) [ -49083.2385] [12331] [depth= 1] . ( 113 sec) [ -49066.1342] [12319] [depth= 4] . ( 113 sec) [ -49024.1010] [12314] [depth= 1] . ( 114 sec) [ -49023.4223] [12317] [depth= 1] . ( 114 sec) [ -49011.4735] [12309] [depth= 1] . ( 114 sec) [ -48977.7078] [12298] [depth= 3] . ( 115 sec) [ -48754.4558] [12221] [depth= 6] . ( 115 sec) [ -48746.4380] [12192] [depth= 4] . ( 115 sec) [ -48521.8054] [12177] [depth= 10] . ( 116 sec) [ -48519.1643] [12167] [depth= 3] . ( 116 sec) [ -48464.4084] [12149] [depth= 5] . ( 117 sec) [ -48460.7220] [12137] [depth= 3] . ( 117 sec) [ -48431.6237] [12128] [depth= 16] . ( 117 sec) [ -48427.6363] [12124] [depth= 2] . ( 118 sec) [ -48338.1286] [12093] [depth= 11] . ( 120 sec) [ -47420.3602] [Branch lengths ] . ( 131 sec) [ -47163.6294] [GTR parameters ] . ( 132 sec) [ -47162.4758] [Alpha ][ 0.478961] . ( 133 sec) [ -47161.7299] [12091] [depth= 1] . ( 133 sec) [ -47161.2892] [12091] [depth= 2] . ( 133 sec) [ -47159.3275] [12108] [depth= 1] . ( 134 sec) [ -46812.0545] [11939] [depth= 19] . ( 134 sec) [ -46783.8622] [11930] [depth= 7] . ( 134 sec) [ -46751.2426] [11919] [depth= 4] . ( 135 sec) [ -46738.9372] [11907] [depth= 1] . ( 135 sec) [ -46729.2354] [11904] [depth= 3] . ( 135 sec) [ -46720.4677] [11900] [depth= 2] . ( 135 sec) [ -46717.8281] [11892] [depth= 3] . ( 136 sec) [ -46711.4356] [11894] [depth= 3] . ( 136 sec) [ -46702.1210] [11894] [depth= 4] . ( 137 sec) [ -46702.0421] [11891] [depth= 2] . ( 138 sec) [ -46610.4226] [11839] [depth= 5] . ( 139 sec) [ -46579.6923] [11820] [depth= 10] . ( 141 sec) [ -46578.6516] [11818] [depth= 1] . ( 141 sec) [ -46576.4669] [11818] [depth= 1] . ( 141 sec) [ -46569.5991] [11820] [depth= 1] . ( 142 sec) [ -46564.7470] [11821] [depth= 1] . ( 142 sec) [ -46562.2488] [11821] [depth= 1] . ( 143 sec) [ -46559.1299] [11820] [depth= 2] . ( 143 sec) [ -46558.9947] [11824] [depth= 1] . ( 144 sec) [ -46553.5049] [11824] [depth= 1] . ( 145 sec) [ -46551.0081] [11820] [depth= 3] . ( 146 sec) [ -46549.1915] [11817] [depth= 1] . ( 146 sec) [ -46529.1666] [11796] [depth= 7] . ( 147 sec) [ -46521.4821] [11799] [depth= 1] . ( 148 sec) [ -46507.0427] [11798] [depth= 1] . ( 148 sec) [ -46506.2062] [11798] [depth= 1] . ( 149 sec) [ -46475.6268] [11796] [depth= 2] . ( 149 sec) [ -46473.7442] [11798] [depth= 1] . ( 151 sec) [ -46473.4435] [11802] [depth= 1] . ( 152 sec) [ -46465.4735] [11807] [depth= 1] . ( 153 sec) [ -46464.8317] [11808] [depth= 1] . ( 154 sec) [ -46463.2933] [11809] [depth= 1] . ( 155 sec) [ -46459.8136] [11807] [depth= 3] . ( 155 sec) [ -46456.0706] [11809] [depth= 1] . ( 156 sec) [ -46453.3034] [11807] [depth= 2] . ( 157 sec) [ -46441.7880] [11798] [depth= 1] . ( 157 sec) [ -46441.4544] [11799] [depth= 1] . ( 157 sec) [ -46441.3238] [11799] [depth= 2] . ( 158 sec) [ -46440.4428] [11801] [depth= 1] . ( 158 sec) [ -46438.6460] [11801] [depth= 1] . ( 158 sec) [ -46438.2590] [11799] [depth= 1] . ( 159 sec) [ -46437.2794] [11794] [depth= 2] . ( 159 sec) [ -46433.7875] [11794] [depth= 2] . ( 160 sec) [ -46433.1556] [11789] [depth= 2] . ( 160 sec) [ -46432.6712] [11787] [depth= 1] . ( 161 sec) [ -46432.4356] [11786] [depth= 1] . ( 161 sec) [ -46432.0404] [11789] [depth= 1] . ( 163 sec) [ -46429.1081] [11786] [depth= 1] . ( 165 sec) [ -46426.1135] [11783] [depth= 8] . ( 166 sec) [ -46425.8738] [11789] [depth= 1] . ( 166 sec) [ -46425.4083] [11787] [depth= 1] . ( 167 sec) [ -46415.1737] [11783] [depth= 1] . ( 167 sec) [ -46414.2554] [11782] [depth= 5] . ( 169 sec) [ -46413.9169] [11782] [depth= 1] . ( 169 sec) [ -46411.8777] [11785] [depth= 1] . ( 171 sec) [ -46408.6938] [11783] [depth= 3] . ( 173 sec) [ -46408.0671] [11768] [depth= 1] . ( 173 sec) [ -46382.9268] [11760] [depth= 3] . ( 174 sec) [ -46381.9181] [11760] [depth= 1] . ( 176 sec) [ -46377.5261] [11760] [depth= 1] . ( 176 sec) [ -46372.8140] [11756] [depth= 1] . ( 177 sec) [ -46368.8937] [11753] [depth= 2] . ( 177 sec) [ -46368.5659] [11755] [depth= 2] . ( 179 sec) [ -46361.7595] [11760] [depth= 4] . ( 181 sec) [ -46357.2215] [11757] [depth= 1] . ( 181 sec) [ -46356.1818] [11757] [depth= 1] . ( 182 sec) [ -46352.4961] [11761] [depth= 1] . ( 182 sec) [ -46348.7806] [11761] [depth= 1] . ( 182 sec) [ -46348.6017] [11762] [depth= 1] . ( 183 sec) [ -46347.3823] [11759] [depth= 3] . ( 184 sec) [ -46339.3328] [11759] [depth= 2] . ( 185 sec) [ -46338.3506] [11759] [depth= 2] . ( 186 sec) [ -46334.2553] [11754] [depth= 1] . ( 187 sec) [ -46332.1993] [11755] [depth= 1] . ( 187 sec) [ -46321.0243] [11747] [depth= 1] . ( 187 sec) [ -46318.0493] [11750] [depth= 1] . ( 188 sec) [ -46316.5906] [11745] [depth= 2] . ( 189 sec) [ -46308.8669] [11739] [depth= 1] . ( 189 sec) [ -46298.4950] [11740] [depth= 3] . ( 189 sec) [ -46296.3544] [11739] [depth= 3] . ( 190 sec) [ -46295.6164] [11741] [depth= 1] . ( 191 sec) [ -46290.1154] [11733] [depth= 3] . ( 192 sec) [ -46286.0073] [11737] [depth= 4] . ( 194 sec) [ -46285.5923] [11740] [depth= 1] . ( 196 sec) [ -46272.8715] [11736] [depth= 2] . ( 198 sec) [ -46272.6270] [11739] [depth= 1] . ( 198 sec) [ -46264.6744] [11740] [depth= 1] . ( 199 sec) [ -46264.0777] [11741] [depth= 1] . ( 200 sec) [ -46264.0062] [11741] [depth= 2] . ( 202 sec) [ -46261.5306] [11739] [depth= 4] . ( 204 sec) [ -46135.7740] [Branch lengths ] . ( 214 sec) [ -46131.6184] [GTR parameters ] . ( 214 sec) [ -46128.8393] [Alpha ][ 0.509090] . ( 216 sec) [ -46128.6037] [11741] [depth= 1] . ( 219 sec) [ -46121.8533] [11737] [depth= 2] . ( 219 sec) [ -46121.4118] [11737] [depth= 1] . ( 220 sec) [ -46121.1751] [11737] [depth= 1] . ( 220 sec) [ -46120.6470] [11735] [depth= 1] . ( 221 sec) [ -46120.4611] [11735] [depth= 2] . ( 222 sec) [ -46120.2019] [11730] [depth= 2] . ( 228 sec) [ -46119.0721] [11729] [depth= 1] . ( 231 sec) [ -46118.8007] [11726] [depth= 1] . ( 234 sec) [ -46118.6374] [11727] [depth= 1] . ( 237 sec) [ -46117.2873] [11720] [depth= 1] . ( 245 sec) [ -46115.7463] [11720] [depth= 1] . ( 245 sec) [ -46110.8469] [11722] [depth= 1] . ( 246 sec) [ -46110.6093] [11721] [depth= 2] . ( 250 sec) [ -46108.4219] [11722] [depth= 3] . ( 253 sec) [ -46106.7752] [11724] [depth= 2] . ( 255 sec) [ -46106.6217] [11725] [depth= 2] . ( 256 sec) [ -46103.1393] [11724] [depth= 5] . ( 258 sec) [ -46102.6555] [11726] [depth= 1] . ( 260 sec) [ -46101.5034] [11726] [depth= 1] . ( 266 sec) [ -46100.3577] [11726] [depth= 1] . ( 270 sec) [ -46096.0601] [11726] [depth= 7] . ( 271 sec) [ -46095.3241] [11726] [depth= 1] . ( 271 sec) [ -46094.4622] [11731] [depth= 1] . ( 273 sec) [ -46094.2009] [11731] [depth= 1] . ( 279 sec) [ -46094.0150] [11727] [depth= 2] . ( 283 sec) [ -46046.4812] [Branch lengths ] . ( 290 sec) [ -46045.9652] [GTR parameters ] . ( 291 sec) [ -46045.4302] [Alpha ][ 0.522299] . ( 293 sec) [ -46044.9513] [11719] [depth= 1] . ( 295 sec) [ -46043.9942] [11720] [depth= 1] . ( 296 sec) [ -46043.9482] [11724] [depth= 1] . ( 297 sec) [ -46043.6874] [11723] [depth= 1] . ( 315 sec) [ -46043.5436] [11723] [depth= 1] . ( 316 sec) [ -46043.5107] [11723] [depth= 1] . ( 329 sec) [ -46043.1855] [11727] [depth= 2] . ( 341 sec) [ -46042.8070] [11726] [depth= 2] . ( 359 sec) [ -46042.6789] [11727] [depth= 11] . ( 364 sec) [ -46019.6904] [Branch lengths ] . ( 372 sec) [ -46019.3425] [GTR parameters ] . ( 372 sec) [ -46019.2544] [Alpha ][ 0.527464] . ( 378 sec) [ -46019.1581] [11727] [depth= 1] . ( 399 sec) [ -46019.1436] [11727] [depth= 1] . ( 444 sec) [ -46019.0750] [11727] [depth= 1] . ( 450 sec) [ -45994.0523] [Branch lengths ] . ( 456 sec) [ -45993.8348] [GTR parameters ] . ( 456 sec) [ -45993.8272] [Alpha ][ 0.528951] . ( 483 sec) [ -45993.7860] [11727] [depth= 1] . ( 534 sec) [ -45982.9990] [Branch lengths ] . ( 541 sec) [ -45982.9372] [GTR parameters ] . ( 541 sec) [ -45982.9310] [Alpha ][ 0.530283] . ( 547 sec) [ -45982.9127] [11727] [depth= 1] . ( 620 sec) [ -45980.6697] [Branch lengths ] . ( 625 sec) [ -45980.6504] [GTR parameters ] . ( 626 sec) [ -45980.6498] [Alpha ][ 0.530813] . ( 705 sec) [ -45979.8577] [Branch lengths ] . ( 723 sec) [ -45979.8426] [11729] [depth= 2] . ( 738 sec) [ -45966.6204] [11787] [depth= 9] . ( 738 sec) [ -45960.6180] [11783] [depth= 1] . ( 756 sec) [ -45959.5235] [11795] [depth= 1] . ( 768 sec) [ -45959.4117] [11799] [depth= 1] . ( 769 sec) [ -45959.2903] [11811] [depth= 1] . ( 774 sec) [ -45956.5295] [11812] [depth= 1] . ( 777 sec) [ -45955.8510] [11812] [depth= 1] . ( 797 sec) [ -45955.6539] [11812] [depth= 1] . ( 805 sec) [ -45955.6393] [11812] [depth= 1] . ( 821 sec) [ -45948.7516] [11791] [depth= 7] . ( 822 sec) [ -45946.0795] [11797] [depth= 1] . ( 825 sec) [ -45929.6042] [11848] [depth= 3] . ( 832 sec) [ -45913.8353] [11855] [depth= 1] . ( 849 sec) [ -45912.9143] [11857] [depth= 1] . ( 850 sec) [ -45910.9372] [11852] [depth= 1] . ( 951 sec) [ -45908.1660] [11875] [depth= 6] . ( 959 sec) [ -45893.5838] [Branch lengths ] . ( 968 sec) [ -45893.1809] [GTR parameters ] . ( 969 sec) [ -45893.1707] [Alpha ][ 0.532469] . ( 1037 sec) [ -45891.4601] [11872] [depth= 1] . ( 1067 sec) [ -45885.2550] [11884] [depth= 1] . ( 1068 sec) [ -45884.0524] [11889] [depth= 1] . ( 1086 sec) [ -45883.8904] [11880] [depth= 2] . ( 1093 sec) [ -45883.8279] [11813] [depth= 1] . ( 1114 sec) [ -45883.3877] [11812] [depth= 1] . ( 1148 sec) [ -45879.1310] [11879] [depth= 1] . ( 1218 sec) [ -45870.8956] [Branch lengths ] . ( 1224 sec) [ -45870.8240] [GTR parameters ] . ( 1224 sec) [ -45870.8183] [Alpha ][ 0.533651] . ( 1244 sec) [ -45868.8422] [11883] [depth= 1] . ( 1342 sec) [ -45867.1469] [11883] [depth= 1] . ( 1384 sec) [ -45867.1073] [11883] [depth= 1] . ( 1405 sec) [ -45866.1214] [11873] [depth= 1] . ( 1477 sec) [ -45864.7127] [Branch lengths ] . ( 1481 sec) [ -45864.6935] [GTR parameters ] . ( 1481 sec) [ -45864.6935] [Alpha ][ 0.533651] . ( 1740 sec) [ -45864.5651] [Branch lengths ] . ( 1740 sec) [ -45864.5651] [Topology ] . ( 1746 sec) [ -45864.5508] [Topology ] . ( 1751 sec) [ -45864.5441] [Topology ] . ( 1757 sec) [ -45864.5399] [Topology ] . ( 1762 sec) [ -45864.5369] [Topology ] . ( 1768 sec) [ -45864.5347] [Topology ] . ( 1773 sec) [ -45864.5331] [Topology ] . ( 1775 sec) [ -45864.5307] [GTR parameters ] . ( 1776 sec) [ -45864.5306] [Alpha ][ 0.533118] . ( 1776 sec) [ -45864.5306] [Topology ] . ( 1782 sec) [ -45864.5287] [Topology ] . ( 1787 sec) [ -45864.5274] [Topology ] . ( 1793 sec) [ -45864.5264] [Topology ] . ( 1799 sec) [ -45864.5255] [Topology ] . ( 1801 sec) [ -45864.5253] [GTR parameters ] . ( 1801 sec) [ -45864.5253] [Alpha ][ 0.533118] . ( 1801 sec) [ -45864.5253] [Topology ] . ( 1807 sec) [ -45864.5244] [Topology ] . ( 1808 sec) [ -45864.5244] [GTR parameters ] . ( 1808 sec) [ -45864.5244] [Alpha ][ 0.533118] . Checking for NNIs, optimizing five branches... . ( 1861 sec) [ -45864.2347] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1914 sec) [ -45864.0364] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1966 sec) [ -45863.9526] [Topology ] . Checking for NNIs, optimizing five branches... . ( 2018 sec) [ -45863.9193] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -45863.919313. . [Random start 5/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 13 sec) [ -91623.3479] [GTR parameters ] . ( 14 sec) [ -89471.1167] [Alpha ][ 0.500960] . ( 14 sec) [ -89225.3577] [21181] [depth= 13] . ( 15 sec) [ -88970.0828] [21125] [depth= 12] . ( 15 sec) [ -88872.5689] [21130] [depth= 1] . ( 15 sec) [ -88632.8666] [21057] [depth= 12] . ( 15 sec) [ -88613.6382] [21051] [depth= 1] . ( 16 sec) [ -88432.0412] [20994] [depth= 5] . ( 16 sec) [ -88400.5085] [20990] [depth= 2] . ( 16 sec) [ -88300.6547] [20952] [depth= 9] . ( 16 sec) [ -88255.5228] [20952] [depth= 1] . ( 17 sec) [ -88224.6216] [20935] [depth= 5] . ( 17 sec) [ -88147.9525] [20882] [depth= 9] . ( 17 sec) [ -88069.8440] [20863] [depth= 6] . ( 18 sec) [ -87927.0728] [20832] [depth= 7] . ( 18 sec) [ -87602.7361] [20772] [depth= 15] . ( 18 sec) [ -87488.2204] [20756] [depth= 1] . ( 19 sec) [ -86835.5695] [20661] [depth= 8] . ( 19 sec) [ -85861.0284] [20576] [depth= 1] . ( 19 sec) [ -85784.6259] [20555] [depth= 29] . ( 20 sec) [ -85358.4403] [20451] [depth= 31] . ( 20 sec) [ -85152.7304] [20385] [depth= 1] . ( 20 sec) [ -84895.5436] [20306] [depth= 18] . ( 20 sec) [ -84342.5775] [20349] [depth= 1] . ( 21 sec) [ -83894.1833] [20299] [depth= 1] . ( 21 sec) [ -82754.5374] [20099] [depth= 9] . ( 21 sec) [ -82428.3908] [19990] [depth= 19] . ( 22 sec) [ -82261.8019] [19985] [depth= 23] . ( 22 sec) [ -82120.1234] [19897] [depth= 10] . ( 22 sec) [ -82074.5600] [19887] [depth= 1] . ( 23 sec) [ -81793.6089] [19802] [depth= 16] . ( 23 sec) [ -81769.3386] [19800] [depth= 1] . ( 23 sec) [ -81653.2251] [19774] [depth= 1] . ( 23 sec) [ -81294.3386] [19688] [depth= 5] . ( 24 sec) [ -81270.5187] [19685] [depth= 1] . ( 24 sec) [ -81216.2503] [19716] [depth= 1] . ( 24 sec) [ -81045.4608] [19645] [depth= 13] . ( 25 sec) [ -81029.3301] [19614] [depth= 1] . ( 25 sec) [ -80994.8413] [19606] [depth= 4] . ( 25 sec) [ -80710.7926] [19584] [depth= 13] . ( 26 sec) [ -80562.9418] [19405] [depth= 7] . ( 26 sec) [ -80299.1015] [19366] [depth= 25] . ( 26 sec) [ -80208.4543] [19320] [depth= 12] . ( 26 sec) [ -79979.6741] [19287] [depth= 19] . ( 27 sec) [ -79839.1407] [19178] [depth= 8] . ( 27 sec) [ -79650.9622] [19166] [depth= 1] . ( 28 sec) [ -79532.4652] [19111] [depth= 27] . ( 28 sec) [ -79237.3880] [19069] [depth= 1] . ( 28 sec) [ -79173.8421] [19053] [depth= 27] . ( 28 sec) [ -78160.3446] [18990] [depth= 8] . ( 29 sec) [ -77807.0100] [18965] [depth= 14] . ( 29 sec) [ -77014.8212] [18970] [depth= 5] . ( 29 sec) [ -77009.7261] [19009] [depth= 1] . ( 30 sec) [ -76590.4754] [18871] [depth= 12] . ( 30 sec) [ -76370.0116] [18814] [depth= 2] . ( 30 sec) [ -76260.2425] [18690] [depth= 9] . ( 31 sec) [ -75929.6250] [18598] [depth= 18] . ( 31 sec) [ -75871.7073] [18560] [depth= 19] . ( 31 sec) [ -75829.5370] [18607] [depth= 18] . ( 32 sec) [ -75570.8641] [18565] [depth= 1] . ( 32 sec) [ -75253.3351] [18504] [depth= 10] . ( 32 sec) [ -75205.5649] [18516] [depth= 1] . ( 33 sec) [ -74961.4833] [18428] [depth= 22] . ( 33 sec) [ -74892.8057] [18378] [depth= 1] . ( 33 sec) [ -74675.9567] [18301] [depth= 17] . ( 34 sec) [ -74495.1813] [18271] [depth= 3] . ( 34 sec) [ -74458.6564] [18221] [depth= 1] . ( 34 sec) [ -74010.2759] [18092] [depth= 15] . ( 35 sec) [ -73959.0809] [18081] [depth= 19] . ( 35 sec) [ -73721.4534] [18002] [depth= 9] . ( 35 sec) [ -73375.6541] [17945] [depth= 6] . ( 35 sec) [ -73301.0697] [17922] [depth= 1] . ( 36 sec) [ -73140.0199] [17759] [depth= 9] . ( 36 sec) [ -73072.8198] [17735] [depth= 17] . ( 36 sec) [ -73048.0713] [17748] [depth= 1] . ( 37 sec) [ -73004.5893] [17735] [depth= 1] . ( 37 sec) [ -72796.6760] [17777] [depth= 1] . ( 37 sec) [ -72578.9983] [17715] [depth= 2] . ( 38 sec) [ -72021.2334] [17662] [depth= 20] . ( 38 sec) [ -71871.0586] [17613] [depth= 12] . ( 38 sec) [ -71090.1080] [17562] [depth= 10] . ( 39 sec) [ -70472.9267] [17514] [depth= 24] . ( 39 sec) [ -70363.2879] [17502] [depth= 1] . ( 39 sec) [ -70137.1836] [17428] [depth= 12] . ( 40 sec) [ -69149.6265] [17350] [depth= 20] . ( 40 sec) [ -68936.9739] [17296] [depth= 19] . ( 40 sec) [ -68905.0569] [17282] [depth= 5] . ( 41 sec) [ -68865.3894] [17276] [depth= 3] . ( 41 sec) [ -68781.9642] [17255] [depth= 21] . ( 41 sec) [ -68377.0116] [17211] [depth= 10] . ( 41 sec) [ -68341.8054] [17203] [depth= 7] . ( 42 sec) [ -68222.6978] [17191] [depth= 17] . ( 42 sec) [ -68136.7622] [17164] [depth= 2] . ( 42 sec) [ -68076.0138] [17140] [depth= 9] . ( 42 sec) [ -68034.0891] [17131] [depth= 5] . ( 43 sec) [ -67828.9968] [17051] [depth= 20] . ( 43 sec) [ -67526.1097] [16945] [depth= 12] . ( 43 sec) [ -67459.3745] [16928] [depth= 6] . ( 44 sec) [ -67423.9494] [16895] [depth= 1] . ( 44 sec) [ -67267.5471] [16865] [depth= 7] . ( 44 sec) [ -67000.0672] [16761] [depth= 5] . ( 45 sec) [ -66489.4274] [16750] [depth= 1] . ( 45 sec) [ -66066.0338] [16600] [depth= 30] . ( 46 sec) [ -66044.3386] [16597] [depth= 1] . ( 46 sec) [ -66026.4534] [16584] [depth= 1] . ( 46 sec) [ -65793.6171] [16525] [depth= 18] . ( 46 sec) [ -65745.0366] [16515] [depth= 1] . ( 47 sec) [ -65562.8143] [16458] [depth= 10] . ( 47 sec) [ -65540.1778] [16424] [depth= 5] . ( 47 sec) [ -65457.7719] [16411] [depth= 2] . ( 48 sec) [ -65457.4007] [16421] [depth= 1] . ( 48 sec) [ -65337.4700] [16385] [depth= 4] . ( 48 sec) [ -65112.4456] [16328] [depth= 29] . ( 49 sec) [ -64883.4644] [16451] [depth= 1] . ( 49 sec) [ -64346.0209] [16106] [depth= 29] . ( 49 sec) [ -64339.0263] [16108] [depth= 1] . ( 50 sec) [ -63770.7724] [16063] [depth= 10] . ( 50 sec) [ -63584.3763] [16036] [depth= 1] . ( 50 sec) [ -63397.9760] [15956] [depth= 11] . ( 51 sec) [ -63244.4147] [15959] [depth= 1] . ( 51 sec) [ -63237.2124] [15956] [depth= 1] . ( 51 sec) [ -63174.0366] [15911] [depth= 16] . ( 51 sec) [ -62996.7739] [15843] [depth= 3] . ( 52 sec) [ -62977.6763] [15819] [depth= 5] . ( 52 sec) [ -62712.0907] [15748] [depth= 20] . ( 52 sec) [ -62618.6134] [15749] [depth= 1] . ( 53 sec) [ -61400.2791] [15408] [depth= 19] . ( 53 sec) [ -61385.3163] [15402] [depth= 2] . ( 53 sec) [ -61008.2639] [15294] [depth= 12] . ( 54 sec) [ -60827.1304] [15255] [depth= 6] . ( 54 sec) [ -60750.3374] [15246] [depth= 1] . ( 54 sec) [ -60749.6530] [15241] [depth= 1] . ( 54 sec) [ -60618.5821] [15188] [depth= 17] . ( 55 sec) [ -60394.9585] [15113] [depth= 6] . ( 55 sec) [ -60291.3604] [15083] [depth= 2] . ( 55 sec) [ -60124.5213] [15019] [depth= 1] . ( 56 sec) [ -60028.9420] [14972] [depth= 9] . ( 56 sec) [ -59995.4984] [14993] [depth= 1] . ( 56 sec) [ -59673.5888] [14908] [depth= 13] . ( 57 sec) [ -59652.1283] [14908] [depth= 1] . ( 57 sec) [ -59516.9699] [14786] [depth= 15] . ( 57 sec) [ -59502.9645] [14774] [depth= 5] . ( 58 sec) [ -59292.1409] [14781] [depth= 17] . ( 58 sec) [ -59252.8470] [14764] [depth= 1] . ( 58 sec) [ -59210.2128] [14729] [depth= 12] . ( 58 sec) [ -59007.4531] [14655] [depth= 9] . ( 59 sec) [ -58997.7009] [14635] [depth= 1] . ( 59 sec) [ -58860.5210] [14586] [depth= 13] . ( 59 sec) [ -58859.4846] [14586] [depth= 1] . ( 60 sec) [ -58754.3906] [14560] [depth= 5] . ( 60 sec) [ -58688.1646] [14551] [depth= 1] . ( 60 sec) [ -58636.7513] [14541] [depth= 8] . ( 61 sec) [ -58605.3155] [14528] [depth= 7] . ( 61 sec) [ -58282.6928] [14435] [depth= 13] . ( 61 sec) [ -58216.7148] [14439] [depth= 1] . ( 62 sec) [ -57846.9113] [14349] [depth= 1] . ( 62 sec) [ -57833.0899] [14349] [depth= 1] . ( 62 sec) [ -57785.4525] [14330] [depth= 4] . ( 63 sec) [ -57753.2684] [14328] [depth= 5] . ( 63 sec) [ -57746.1946] [14314] [depth= 2] . ( 63 sec) [ -57744.4727] [14312] [depth= 2] . ( 63 sec) [ -57715.8557] [14303] [depth= 15] . ( 64 sec) [ -57663.3841] [14289] [depth= 13] . ( 64 sec) [ -57610.6298] [14276] [depth= 2] . ( 64 sec) [ -57527.8311] [14255] [depth= 1] . ( 65 sec) [ -57509.1107] [14238] [depth= 1] . ( 65 sec) [ -57263.0185] [14225] [depth= 11] . ( 65 sec) [ -57248.1332] [14217] [depth= 9] . ( 66 sec) [ -57177.3670] [14192] [depth= 15] . ( 66 sec) [ -57137.6865] [14180] [depth= 1] . ( 66 sec) [ -57136.9960] [14193] [depth= 4] . ( 67 sec) [ -57119.7572] [14191] [depth= 1] . ( 67 sec) [ -57110.2388] [14182] [depth= 2] . ( 68 sec) [ -57092.9189] [14176] [depth= 10] . ( 68 sec) [ -57091.0229] [14166] [depth= 13] . ( 68 sec) [ -57074.6840] [14162] [depth= 2] . ( 69 sec) [ -56545.9350] [14141] [depth= 10] . ( 69 sec) [ -56529.4146] [14133] [depth= 1] . ( 69 sec) [ -56084.6802] [13970] [depth= 6] . ( 70 sec) [ -56079.3460] [13970] [depth= 1] . ( 70 sec) [ -55922.4832] [13914] [depth= 14] . ( 70 sec) [ -55920.8321] [13917] [depth= 1] . ( 70 sec) [ -55914.8044] [13916] [depth= 1] . ( 71 sec) [ -55887.4126] [13923] [depth= 1] . ( 71 sec) [ -55838.5843] [13906] [depth= 2] . ( 71 sec) [ -55764.2562] [13897] [depth= 2] . ( 72 sec) [ -55662.2936] [13885] [depth= 14] . ( 72 sec) [ -55631.7303] [13870] [depth= 2] . ( 72 sec) [ -55609.7836] [13881] [depth= 1] . ( 72 sec) [ -55587.2633] [13885] [depth= 1] . ( 73 sec) [ -55545.8550] [13864] [depth= 3] . ( 73 sec) [ -55513.5588] [13865] [depth= 1] . ( 73 sec) [ -55475.2765] [13853] [depth= 1] . ( 74 sec) [ -55470.1527] [13855] [depth= 2] . ( 74 sec) [ -55443.8031] [13847] [depth= 11] . ( 74 sec) [ -55369.4642] [13828] [depth= 2] . ( 75 sec) [ -55308.2593] [13839] [depth= 1] . ( 75 sec) [ -55297.6268] [13837] [depth= 3] . ( 76 sec) [ -55079.4904] [13702] [depth= 5] . ( 76 sec) [ -54757.1413] [13693] [depth= 1] . ( 76 sec) [ -54727.0617] [13604] [depth= 7] . ( 76 sec) [ -54701.5877] [13624] [depth= 1] . ( 77 sec) [ -54653.8100] [13575] [depth= 12] . ( 77 sec) [ -54576.1796] [13562] [depth= 1] . ( 78 sec) [ -54506.5368] [13470] [depth= 13] . ( 78 sec) [ -54486.2627] [13472] [depth= 1] . ( 78 sec) [ -54474.3904] [13414] [depth= 13] . ( 79 sec) [ -54432.4812] [13404] [depth= 1] . ( 79 sec) [ -54342.6245] [13367] [depth= 6] . ( 79 sec) [ -54252.0514] [13353] [depth= 5] . ( 79 sec) [ -54245.4670] [13346] [depth= 1] . ( 80 sec) [ -54116.2229] [13309] [depth= 2] . ( 80 sec) [ -53795.1297] [13308] [depth= 13] . ( 81 sec) [ -53520.2545] [13251] [depth= 4] . ( 81 sec) [ -53471.0724] [13235] [depth= 1] . ( 81 sec) [ -53340.9391] [13200] [depth= 14] . ( 82 sec) [ -53303.4604] [13133] [depth= 20] . ( 82 sec) [ -53211.6626] [13119] [depth= 1] . ( 82 sec) [ -53183.2032] [13121] [depth= 20] . ( 82 sec) [ -53181.3415] [13112] [depth= 4] . ( 83 sec) [ -53100.7036] [13109] [depth= 13] . ( 83 sec) [ -53072.3457] [13108] [depth= 1] . ( 83 sec) [ -52971.7499] [13061] [depth= 10] . ( 84 sec) [ -52885.9203] [13033] [depth= 9] . ( 84 sec) [ -52775.2895] [12987] [depth= 2] . ( 84 sec) [ -52602.5774] [12961] [depth= 5] . ( 85 sec) [ -52583.6667] [12960] [depth= 6] . ( 85 sec) [ -52573.5435] [12951] [depth= 1] . ( 85 sec) [ -52555.8624] [12946] [depth= 6] . ( 85 sec) [ -52515.9388] [12954] [depth= 1] . ( 86 sec) [ -52179.1596] [12941] [depth= 1] . ( 86 sec) [ -52173.1914] [12944] [depth= 19] . ( 87 sec) [ -52152.9849] [12940] [depth= 1] . ( 87 sec) [ -52128.4088] [12958] [depth= 1] . ( 87 sec) [ -52093.8679] [12948] [depth= 1] . ( 88 sec) [ -52087.7269] [12949] [depth= 1] . ( 88 sec) [ -52016.0495] [12929] [depth= 1] . ( 88 sec) [ -51905.9739] [12910] [depth= 3] . ( 88 sec) [ -51901.1247] [12904] [depth= 1] . ( 89 sec) [ -51818.7165] [12886] [depth= 7] . ( 89 sec) [ -51670.8426] [12827] [depth= 5] . ( 89 sec) [ -51619.9062] [12802] [depth= 3] . ( 90 sec) [ -51556.5368] [12796] [depth= 1] . ( 90 sec) [ -51470.3480] [12764] [depth= 5] . ( 90 sec) [ -51433.6188] [12742] [depth= 5] . ( 91 sec) [ -51307.3993] [12721] [depth= 3] . ( 91 sec) [ -51283.2955] [12701] [depth= 1] . ( 91 sec) [ -51246.5537] [12682] [depth= 11] . ( 92 sec) [ -51220.6742] [12676] [depth= 1] . ( 92 sec) [ -51072.7799] [12676] [depth= 1] . ( 92 sec) [ -50999.4774] [12680] [depth= 2] . ( 93 sec) [ -50968.4253] [12680] [depth= 1] . ( 93 sec) [ -50967.1360] [12680] [depth= 1] . ( 93 sec) [ -50819.2701] [12665] [depth= 6] . ( 94 sec) [ -50784.5930] [12656] [depth= 8] . ( 94 sec) [ -50724.8541] [12633] [depth= 5] . ( 94 sec) [ -50674.0666] [12616] [depth= 2] . ( 94 sec) [ -50673.0217] [12619] [depth= 1] . ( 95 sec) [ -50670.1281] [12614] [depth= 1] . ( 95 sec) [ -50559.9526] [12562] [depth= 4] . ( 95 sec) [ -50551.8381] [12560] [depth= 1] . ( 96 sec) [ -50546.1024] [12562] [depth= 1] . ( 96 sec) [ -50544.0665] [12558] [depth= 1] . ( 96 sec) [ -50533.9043] [12552] [depth= 1] . ( 97 sec) [ -50245.8420] [12538] [depth= 2] . ( 97 sec) [ -50150.8401] [12516] [depth= 4] . ( 97 sec) [ -50100.8698] [12499] [depth= 4] . ( 98 sec) [ -50052.1087] [12481] [depth= 2] . ( 98 sec) [ -49959.1966] [12474] [depth= 4] . ( 98 sec) [ -49950.5168] [12467] [depth= 2] . ( 99 sec) [ -49851.2924] [12433] [depth= 6] . ( 99 sec) [ -49822.9662] [12448] [depth= 1] . ( 99 sec) [ -49817.4902] [12446] [depth= 1] . ( 100 sec) [ -49816.0481] [12451] [depth= 1] . ( 100 sec) [ -49788.9682] [12428] [depth= 1] . ( 100 sec) [ -49743.6665] [12421] [depth= 12] . ( 101 sec) [ -49711.7207] [12417] [depth= 2] . ( 101 sec) [ -49706.5305] [12417] [depth= 1] . ( 101 sec) [ -49654.7932] [12406] [depth= 2] . ( 102 sec) [ -49647.8032] [12408] [depth= 1] . ( 102 sec) [ -49464.2286] [12408] [depth= 1] . ( 102 sec) [ -49450.3475] [12403] [depth= 2] . ( 103 sec) [ -49435.1504] [12403] [depth= 2] . ( 103 sec) [ -49427.0496] [12410] [depth= 1] . ( 103 sec) [ -49349.1699] [12366] [depth= 1] . ( 104 sec) [ -49253.8294] [12343] [depth= 7] . ( 104 sec) [ -49246.4378] [12345] [depth= 1] . ( 104 sec) [ -49234.4572] [12344] [depth= 2] . ( 105 sec) [ -49232.2352] [12342] [depth= 1] . ( 105 sec) [ -49219.2954] [12342] [depth= 1] . ( 105 sec) [ -49115.9451] [12294] [depth= 11] . ( 106 sec) [ -49096.7653] [12286] [depth= 12] . ( 106 sec) [ -49073.5240] [12276] [depth= 4] . ( 107 sec) [ -49037.8533] [12258] [depth= 9] . ( 107 sec) [ -49030.6844] [12258] [depth= 1] . ( 107 sec) [ -48993.2587] [12246] [depth= 8] . ( 108 sec) [ -48991.1388] [12246] [depth= 1] . ( 108 sec) [ -48980.9596] [12237] [depth= 5] . ( 108 sec) [ -48818.8767] [12179] [depth= 2] . ( 109 sec) [ -48786.0472] [12173] [depth= 1] . ( 109 sec) [ -48774.9104] [12173] [depth= 1] . ( 109 sec) [ -48756.9740] [12177] [depth= 1] . ( 110 sec) [ -48686.0728] [12162] [depth= 2] . ( 110 sec) [ -48684.9911] [12161] [depth= 1] . ( 110 sec) [ -48682.7857] [12163] [depth= 1] . ( 111 sec) [ -48676.5474] [12163] [depth= 1] . ( 111 sec) [ -48660.7939] [12163] [depth= 1] . ( 111 sec) [ -48538.0066] [12105] [depth= 10] . ( 112 sec) [ -48530.5626] [12106] [depth= 5] . ( 112 sec) [ -48526.5072] [12102] [depth= 1] . ( 112 sec) [ -48513.1497] [12099] [depth= 1] . ( 113 sec) [ -48512.8062] [12101] [depth= 1] . ( 113 sec) [ -48459.7637] [12080] [depth= 4] . ( 114 sec) [ -48454.4332] [12081] [depth= 1] . ( 114 sec) [ -48442.7640] [12071] [depth= 6] . ( 114 sec) [ -48400.0998] [12047] [depth= 17] . ( 117 sec) [ -47327.1612] [Branch lengths ] . ( 128 sec) [ -47076.2850] [GTR parameters ] . ( 128 sec) [ -47074.6315] [Alpha ][ 0.475605] . ( 129 sec) [ -47065.2791] [12037] [depth= 4] . ( 129 sec) [ -47065.1395] [12035] [depth= 3] . ( 130 sec) [ -47061.1729] [12025] [depth= 1] . ( 131 sec) [ -47043.4899] [12014] [depth= 2] . ( 131 sec) [ -47042.6720] [12018] [depth= 1] . ( 132 sec) [ -47042.2149] [12017] [depth= 1] . ( 132 sec) [ -47019.6137] [12006] [depth= 1] . ( 133 sec) [ -47001.1593] [11990] [depth= 1] . ( 133 sec) [ -46988.8760] [11988] [depth= 1] . ( 135 sec) [ -46987.4932] [11988] [depth= 1] . ( 135 sec) [ -46982.1888] [11986] [depth= 1] . ( 136 sec) [ -46938.9422] [11959] [depth= 2] . ( 137 sec) [ -46937.4713] [11963] [depth= 2] . ( 137 sec) [ -46895.2521] [11962] [depth= 3] . ( 138 sec) [ -46877.9801] [11946] [depth= 1] . ( 138 sec) [ -46851.4995] [11930] [depth= 1] . ( 139 sec) [ -46815.8435] [11913] [depth= 7] . ( 139 sec) [ -46809.9150] [11907] [depth= 10] . ( 140 sec) [ -46780.3792] [11891] [depth= 16] . ( 141 sec) [ -46775.6290] [11890] [depth= 1] . ( 141 sec) [ -46766.7337] [11884] [depth= 5] . ( 142 sec) [ -46762.9447] [11878] [depth= 1] . ( 142 sec) [ -46726.3973] [11864] [depth= 19] . ( 143 sec) [ -46711.3973] [11857] [depth= 1] . ( 143 sec) [ -46708.6591] [11857] [depth= 1] . ( 145 sec) [ -46648.9663] [11840] [depth= 8] . ( 145 sec) [ -46647.5555] [11845] [depth= 2] . ( 146 sec) [ -46646.1724] [11843] [depth= 1] . ( 148 sec) [ -46639.5449] [11847] [depth= 1] . ( 149 sec) [ -46622.6180] [11839] [depth= 1] . ( 150 sec) [ -46620.4041] [11844] [depth= 1] . ( 151 sec) [ -46605.9836] [11846] [depth= 2] . ( 151 sec) [ -46598.0889] [11844] [depth= 3] . ( 153 sec) [ -46598.0473] [11841] [depth= 1] . ( 154 sec) [ -46593.1924] [11844] [depth= 1] . ( 154 sec) [ -46591.2705] [11839] [depth= 2] . ( 155 sec) [ -46590.4155] [11839] [depth= 1] . ( 157 sec) [ -46588.6724] [11840] [depth= 1] . ( 158 sec) [ -46587.5514] [11840] [depth= 2] . ( 159 sec) [ -46493.1697] [11800] [depth= 10] . ( 159 sec) [ -46489.8575] [11797] [depth= 1] . ( 160 sec) [ -46488.8136] [11797] [depth= 1] . ( 161 sec) [ -46488.4262] [11797] [depth= 1] . ( 162 sec) [ -46459.3144] [11790] [depth= 1] . ( 162 sec) [ -46458.4709] [11793] [depth= 1] . ( 163 sec) [ -46456.9658] [11792] [depth= 2] . ( 163 sec) [ -46455.6511] [11791] [depth= 2] . ( 163 sec) [ -46447.5892] [11783] [depth= 1] . ( 164 sec) [ -46436.6945] [11778] [depth= 2] . ( 165 sec) [ -46424.3464] [11770] [depth= 5] . ( 165 sec) [ -46418.0572] [11767] [depth= 1] . ( 166 sec) [ -46413.7627] [11771] [depth= 1] . ( 166 sec) [ -46411.8375] [11774] [depth= 1] . ( 169 sec) [ -46410.8642] [11774] [depth= 2] . ( 171 sec) [ -46410.7189] [11777] [depth= 1] . ( 172 sec) [ -46405.8588] [11782] [depth= 1] . ( 172 sec) [ -46402.8513] [11779] [depth= 8] . ( 173 sec) [ -46401.7864] [11780] [depth= 1] . ( 174 sec) [ -46401.2925] [11779] [depth= 1] . ( 174 sec) [ -46400.0735] [11775] [depth= 2] . ( 175 sec) [ -46399.5680] [11776] [depth= 2] . ( 175 sec) [ -46396.6497] [11778] [depth= 1] . ( 176 sec) [ -46393.3065] [11777] [depth= 1] . ( 176 sec) [ -46392.1299] [11780] [depth= 2] . ( 177 sec) [ -46385.1970] [11782] [depth= 1] . ( 177 sec) [ -46381.3653] [11777] [depth= 2] . ( 178 sec) [ -46377.8492] [11779] [depth= 1] . ( 179 sec) [ -46376.3930] [11780] [depth= 1] . ( 179 sec) [ -46367.7919] [11777] [depth= 1] . ( 180 sec) [ -46366.7323] [11779] [depth= 1] . ( 180 sec) [ -46363.7859] [11775] [depth= 1] . ( 181 sec) [ -46363.2455] [11772] [depth= 1] . ( 182 sec) [ -46355.0186] [11771] [depth= 3] . ( 183 sec) [ -46351.5269] [11767] [depth= 2] . ( 183 sec) [ -46351.4209] [11759] [depth= 3] . ( 184 sec) [ -46348.5844] [11760] [depth= 5] . ( 185 sec) [ -46347.7384] [11765] [depth= 3] . ( 185 sec) [ -46345.3394] [11763] [depth= 7] . ( 185 sec) [ -46342.1204] [11762] [depth= 1] . ( 186 sec) [ -46340.6060] [11761] [depth= 1] . ( 186 sec) [ -46337.3193] [11765] [depth= 1] . ( 187 sec) [ -46336.7739] [11765] [depth= 1] . ( 188 sec) [ -46335.6533] [11760] [depth= 1] . ( 188 sec) [ -46334.4577] [11759] [depth= 1] . ( 189 sec) [ -46334.2411] [11757] [depth= 1] . ( 189 sec) [ -46333.0999] [11754] [depth= 1] . ( 189 sec) [ -46325.1302] [11748] [depth= 1] . ( 190 sec) [ -46321.5314] [11746] [depth= 1] . ( 190 sec) [ -46319.9013] [11744] [depth= 1] . ( 191 sec) [ -46319.4083] [11744] [depth= 1] . ( 192 sec) [ -46315.9894] [11752] [depth= 1] . ( 192 sec) [ -46314.3723] [11747] [depth= 1] . ( 193 sec) [ -46314.1098] [11743] [depth= 3] . ( 194 sec) [ -46313.6363] [11748] [depth= 1] . ( 195 sec) [ -46312.5300] [11753] [depth= 1] . ( 196 sec) [ -46311.9615] [11753] [depth= 1] . ( 197 sec) [ -46311.7345] [11750] [depth= 4] . ( 198 sec) [ -46309.8926] [11748] [depth= 1] . ( 198 sec) [ -46302.5868] [11756] [depth= 2] . ( 200 sec) [ -46291.7441] [11745] [depth= 1] . ( 200 sec) [ -46289.1963] [11745] [depth= 1] . ( 201 sec) [ -46287.4192] [11742] [depth= 1] . ( 202 sec) [ -46284.5711] [11742] [depth= 2] . ( 202 sec) [ -46282.5956] [11743] [depth= 1] . ( 205 sec) [ -46145.1704] [Branch lengths ] . ( 213 sec) [ -46140.4031] [GTR parameters ] . ( 213 sec) [ -46136.5272] [Alpha ][ 0.511146] . ( 215 sec) [ -46133.4967] [11744] [depth= 2] . ( 216 sec) [ -46132.9742] [11743] [depth= 1] . ( 217 sec) [ -46131.8633] [11740] [depth= 1] . ( 218 sec) [ -46131.3610] [11742] [depth= 1] . ( 219 sec) [ -46131.3334] [11746] [depth= 3] . ( 221 sec) [ -46123.1269] [11746] [depth= 6] . ( 221 sec) [ -46121.7760] [11762] [depth= 1] . ( 223 sec) [ -46106.2231] [11757] [depth= 5] . ( 224 sec) [ -46102.4342] [11769] [depth= 1] . ( 225 sec) [ -46101.9392] [11772] [depth= 1] . ( 227 sec) [ -46099.7148] [11772] [depth= 1] . ( 228 sec) [ -46097.8853] [11763] [depth= 2] . ( 232 sec) [ -46097.6917] [11762] [depth= 2] . ( 233 sec) [ -46097.3403] [11762] [depth= 1] . ( 233 sec) [ -46086.1389] [11762] [depth= 2] . ( 235 sec) [ -46085.5550] [11762] [depth= 1] . ( 237 sec) [ -46085.5425] [11762] [depth= 1] . ( 237 sec) [ -46084.7615] [11762] [depth= 1] . ( 238 sec) [ -46082.4302] [11764] [depth= 1] . ( 238 sec) [ -46081.8143] [11762] [depth= 1] . ( 239 sec) [ -46081.7823] [11762] [depth= 1] . ( 242 sec) [ -46081.7540] [11762] [depth= 2] . ( 244 sec) [ -46081.5754] [11761] [depth= 1] . ( 245 sec) [ -46081.3843] [11761] [depth= 1] . ( 246 sec) [ -46080.3736] [11761] [depth= 1] . ( 247 sec) [ -46079.7939] [11760] [depth= 1] . ( 249 sec) [ -46078.9847] [11760] [depth= 2] . ( 249 sec) [ -46077.2844] [11764] [depth= 1] . ( 250 sec) [ -46077.2525] [11764] [depth= 1] . ( 251 sec) [ -46077.0437] [11768] [depth= 2] . ( 252 sec) [ -46076.5057] [11770] [depth= 2] . ( 252 sec) [ -46076.3523] [11770] [depth= 1] . ( 252 sec) [ -46075.7003] [11772] [depth= 2] . ( 258 sec) [ -46075.1018] [11772] [depth= 1] . ( 260 sec) [ -46073.4088] [11772] [depth= 1] . ( 262 sec) [ -46072.6269] [11773] [depth= 1] . ( 264 sec) [ -46072.5504] [11773] [depth= 1] . ( 272 sec) [ -46071.8164] [11772] [depth= 1] . ( 274 sec) [ -46071.5935] [11772] [depth= 1] . ( 281 sec) [ -46070.2532] [11772] [depth= 2] . ( 283 sec) [ -46069.0421] [11774] [depth= 1] . ( 284 sec) [ -46068.4368] [11773] [depth= 1] . ( 287 sec) [ -46068.3634] [11773] [depth= 1] . ( 289 sec) [ -46018.9836] [Branch lengths ] . ( 296 sec) [ -46017.9651] [GTR parameters ] . ( 296 sec) [ -46017.5703] [Alpha ][ 0.522711] . ( 303 sec) [ -46017.5152] [11773] [depth= 1] . ( 306 sec) [ -46017.4652] [11776] [depth= 3] . ( 310 sec) [ -46016.1758] [11779] [depth= 2] . ( 315 sec) [ -46016.1545] [11779] [depth= 1] . ( 319 sec) [ -46015.6838] [11775] [depth= 1] . ( 340 sec) [ -46015.4921] [11771] [depth= 1] . ( 345 sec) [ -46015.4758] [11772] [depth= 1] . ( 345 sec) [ -46015.4447] [11772] [depth= 1] . ( 359 sec) [ -46015.2820] [11772] [depth= 1] . ( 368 sec) [ -46015.2682] [11772] [depth= 1] . ( 373 sec) [ -46015.0233] [11772] [depth= 1] . ( 375 sec) [ -45996.4118] [Branch lengths ] . ( 381 sec) [ -45995.9714] [GTR parameters ] . ( 381 sec) [ -45995.7959] [Alpha ][ 0.529870] . ( 411 sec) [ -45995.7857] [11772] [depth= 1] . ( 459 sec) [ -45995.7748] [11775] [depth= 2] . ( 461 sec) [ -45985.9005] [Branch lengths ] . ( 469 sec) [ -45985.6552] [GTR parameters ] . ( 470 sec) [ -45985.6328] [Alpha ][ 0.532392] . ( 486 sec) [ -45985.5240] [11777] [depth= 1] . ( 548 sec) [ -45980.3330] [Branch lengths ] . ( 557 sec) [ -45980.1827] [GTR parameters ] . ( 558 sec) [ -45980.1810] [Alpha ][ 0.533115] . ( 635 sec) [ -45978.3518] [Branch lengths ] . ( 642 sec) [ -45976.1633] [11803] [depth= 2] . ( 642 sec) [ -45955.1350] [11814] [depth= 5] . ( 647 sec) [ -45943.4366] [11816] [depth= 1] . ( 648 sec) [ -45941.6207] [11839] [depth= 2] . ( 661 sec) [ -45940.5804] [11856] [depth= 1] . ( 673 sec) [ -45938.1920] [11904] [depth= 2] . ( 689 sec) [ -45928.0515] [11901] [depth= 2] . ( 716 sec) [ -45927.5872] [11901] [depth= 1] . ( 723 sec) [ -45927.5735] [11901] [depth= 1] . ( 752 sec) [ -45927.4925] [11901] [depth= 1] . ( 785 sec) [ -45924.3749] [11908] [depth= 1] . ( 792 sec) [ -45919.7746] [11900] [depth= 1] . ( 799 sec) [ -45905.6278] [11892] [depth= 1] . ( 833 sec) [ -45897.9021] [11898] [depth= 1] . ( 844 sec) [ -45896.8766] [11897] [depth= 3] . ( 853 sec) [ -45893.8391] [11879] [depth= 1] . ( 854 sec) [ -45893.7312] [11877] [depth= 1] . ( 870 sec) [ -45891.5490] [11882] [depth= 1] . ( 871 sec) [ -45891.5373] [11882] [depth= 1] . ( 886 sec) [ -45870.4750] [Branch lengths ] . ( 892 sec) [ -45870.1897] [GTR parameters ] . ( 892 sec) [ -45870.1841] [Alpha ][ 0.531894] . ( 933 sec) [ -45866.5747] [11904] [depth= 2] . ( 984 sec) [ -45866.5569] [11904] [depth= 1] . ( 1021 sec) [ -45866.3305] [11903] [depth= 1] . ( 1147 sec) [ -45864.4326] [Branch lengths ] . ( 1154 sec) [ -45864.3847] [GTR parameters ] . ( 1155 sec) [ -45864.3570] [Alpha ][ 0.534351] . ( 1414 sec) [ -45863.9624] [Branch lengths ] . ( 1415 sec) [ -45863.9624] [Topology ] . ( 1420 sec) [ -45863.8919] [Topology ] . ( 1426 sec) [ -45863.8595] [Topology ] . ( 1431 sec) [ -45863.8403] [Topology ] . ( 1437 sec) [ -45863.8284] [Topology ] . ( 1442 sec) [ -45863.8208] [Topology ] . ( 1448 sec) [ -45863.8158] [Topology ] . ( 1451 sec) [ -45863.7870] [GTR parameters ] . ( 1452 sec) [ -45863.7840] [Alpha ][ 0.533283] . ( 1452 sec) [ -45863.7840] [Topology ] . ( 1457 sec) [ -45863.7744] [Topology ] . ( 1463 sec) [ -45863.7690] [Topology ] . ( 1469 sec) [ -45863.7655] [Topology ] . ( 1474 sec) [ -45863.7632] [Topology ] . ( 1480 sec) [ -45863.7617] [Topology ] . ( 1485 sec) [ -45863.7606] [Topology ] . ( 1487 sec) [ -45863.7576] [GTR parameters ] . ( 1488 sec) [ -45863.7576] [Alpha ][ 0.533283] . ( 1488 sec) [ -45863.7576] [Topology ] . ( 1493 sec) [ -45863.7561] [Topology ] . ( 1499 sec) [ -45863.7551] [Topology ] . ( 1500 sec) [ -45863.7550] [GTR parameters ] . ( 1500 sec) [ -45863.7550] [Alpha ][ 0.533283] . ( 1501 sec) [ -45863.7550] [Topology ] . ( 1506 sec) [ -45863.7543] [Topology ] . ( 1507 sec) [ -45863.7543] [GTR parameters ] . ( 1508 sec) [ -45863.7543] [Alpha ][ 0.533283] . Checking for NNIs, optimizing five branches... . ( 1564 sec) [ -45862.9633] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1620 sec) [ -45862.3051] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1675 sec) [ -45861.8938] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1732 sec) [ -45861.7650] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1785 sec) [ -45861.7217] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -45861.721717. . Computing pairwise distances... . Building BioNJ tree... . Maximizing likelihood (using NNI moves)... . ( 13 sec) [ -48412.0933] [GTR parameters ] . ( 14 sec) [ -47896.6604] [Alpha ][ 0.500960] . ( 14 sec) [ -47896.6604] [Topology ] . ( 19 sec) [ -46842.0254] [Topology ] . ( 25 sec) [ -46574.5707] [Topology ] . ( 31 sec) [ -46466.2556] [Topology ] . ( 36 sec) [ -46392.6354] [Topology ] . ( 42 sec) [ -46362.0933] [Topology ] . ( 47 sec) [ -46342.1045] [Topology ] . ( 53 sec) [ -46333.8995] [Topology ] . ( 58 sec) [ -46304.5516] [Topology ] . ( 64 sec) [ -46279.5135] [Topology ] . ( 79 sec) [ -46184.8533] [GTR parameters ] . ( 80 sec) [ -46184.4821] [Alpha ][ 0.511611] . ( 80 sec) [ -46184.4821] [Topology ] . ( 85 sec) [ -46167.1499] [Topology ] . ( 91 sec) [ -46151.3147] [Topology ] . ( 96 sec) [ -46138.3074] [Topology ] . ( 102 sec) [ -46135.8864] [Topology ] . ( 108 sec) [ -46120.4211] [Topology ] . ( 113 sec) [ -46110.9562] [Topology ] . ( 119 sec) [ -46106.1377] [Topology ] . ( 125 sec) [ -46091.5607] [Topology ] . ( 130 sec) [ -46085.7800] [Topology ] . ( 144 sec) [ -46071.4695] [GTR parameters ] . ( 144 sec) [ -46071.0192] [Alpha ][ 0.522934] . ( 144 sec) [ -46071.0192] [Topology ] . ( 150 sec) [ -46059.5651] [Topology ] . ( 155 sec) [ -46049.7743] [Topology ] . ( 161 sec) [ -46047.5282] [Topology ] . ( 167 sec) [ -46045.6369] [Topology ] . ( 172 sec) [ -46045.0146] [Topology ] . ( 178 sec) [ -46044.6647] [Topology ] . ( 183 sec) [ -46044.4817] [Topology ] . ( 189 sec) [ -46044.4043] [Topology ] . ( 195 sec) [ -46044.3553] [Topology ] . Checking for NNIs, optimizing five branches... . ( 258 sec) [ -46042.9471] [Topology ] . ( 263 sec) [ -46042.8071] [GTR parameters ] . ( 263 sec) [ -46042.8071] [Alpha ][ 0.522934] . ( 264 sec) [ -46042.8071] [Topology ] . ( 269 sec) [ -46042.7034] [Topology ] . ( 275 sec) [ -46042.6692] [Topology ] . ( 280 sec) [ -46042.6479] [Topology ] . ( 286 sec) [ -46042.6315] [Topology ] . ( 292 sec) [ -46042.6181] [Topology ] . ( 297 sec) [ -46042.6066] [Topology ] . Checking for NNIs, optimizing five branches... . ( 354 sec) [ -46041.5640] [Topology ] . ( 360 sec) [ -46041.5547] [GTR parameters ] . ( 360 sec) [ -46041.5547] [Alpha ][ 0.522934] . ( 360 sec) [ -46041.5547] [Topology ] . ( 366 sec) [ -46041.3916] [Topology ] . ( 371 sec) [ -46041.3637] [Topology ] . ( 377 sec) [ -46041.3520] [Topology ] . ( 383 sec) [ -46041.3438] [Topology ] . ( 388 sec) [ -46041.3421] [Topology ] . ( 394 sec) [ -46039.7492] [Topology ] . ( 400 sec) [ -46037.2589] [Topology ] . ( 405 sec) [ -46035.7809] [Topology ] . ( 411 sec) [ -46035.4547] [Topology ] . Checking for NNIs, optimizing five branches... . ( 473 sec) [ -46032.5470] [Topology ] . ( 478 sec) [ -46032.5264] [GTR parameters ] . ( 479 sec) [ -46032.5248] [Alpha ][ 0.523649] . ( 479 sec) [ -46032.5248] [Topology ] . ( 484 sec) [ -46032.3831] [Topology ] . ( 490 sec) [ -46032.3489] [Topology ] . ( 496 sec) [ -46032.3367] [Topology ] . ( 501 sec) [ -46032.3308] [Topology ] . ( 507 sec) [ -46032.3270] [Topology ] . ( 512 sec) [ -46032.3240] [Topology ] . Checking for NNIs, optimizing five branches... . ( 570 sec) [ -46027.1343] [Topology ] . ( 574 sec) [ -46027.1327] [GTR parameters ] . ( 575 sec) [ -46027.1327] [Alpha ][ 0.523649] . ( 575 sec) [ -46027.1327] [Topology ] . ( 581 sec) [ -46027.0998] [Topology ] . ( 586 sec) [ -46026.0971] [Topology ] . ( 592 sec) [ -46025.9513] [Topology ] . ( 598 sec) [ -46024.7626] [Topology ] . ( 603 sec) [ -46024.4995] [Topology ] . ( 609 sec) [ -46024.2885] [Topology ] . ( 614 sec) [ -46024.1962] [Topology ] . ( 620 sec) [ -46024.1417] [Topology ] . ( 626 sec) [ -46024.1067] [Topology ] . Checking for NNIs, optimizing five branches... . ( 688 sec) [ -46023.6154] [Topology ] . ( 693 sec) [ -46023.5871] [GTR parameters ] . ( 694 sec) [ -46023.5856] [Alpha ][ 0.523125] . ( 694 sec) [ -46023.5856] [Topology ] . ( 699 sec) [ -46016.3974] [Topology ] . ( 705 sec) [ -46015.1162] [Topology ] . ( 711 sec) [ -46014.8537] [Topology ] . ( 716 sec) [ -46014.7646] [Topology ] . ( 722 sec) [ -46014.7284] [Topology ] . ( 727 sec) [ -46014.7106] [Topology ] . ( 733 sec) [ -46014.7000] [Topology ] . Checking for NNIs, optimizing five branches... . ( 790 sec) [ -46009.7342] [Topology ] . ( 796 sec) [ -46009.7240] [GTR parameters ] . ( 796 sec) [ -46009.7215] [Alpha ][ 0.523919] . ( 796 sec) [ -46009.7215] [Topology ] . ( 802 sec) [ -46009.4455] [Topology ] . ( 808 sec) [ -46008.8597] [Topology ] . ( 813 sec) [ -46008.5137] [Topology ] . ( 819 sec) [ -46007.3799] [Topology ] . ( 824 sec) [ -46007.1656] [Topology ] . ( 830 sec) [ -46007.0637] [Topology ] . ( 835 sec) [ -46007.0035] [Topology ] . ( 841 sec) [ -46006.9556] [Topology ] . ( 847 sec) [ -46006.9179] [Topology ] . Checking for NNIs, optimizing five branches... . ( 903 sec) [ -46006.5112] [Topology ] . ( 908 sec) [ -46006.5086] [GTR parameters ] . ( 908 sec) [ -46006.5064] [Alpha ][ 0.524665] . ( 909 sec) [ -46006.5064] [Topology ] . ( 914 sec) [ -46005.6454] [Topology ] . ( 920 sec) [ -46005.2060] [Topology ] . ( 925 sec) [ -46004.9538] [Topology ] . ( 931 sec) [ -46004.7773] [Topology ] . ( 936 sec) [ -46004.6535] [Topology ] . ( 942 sec) [ -46004.5431] [Topology ] . ( 948 sec) [ -46003.9570] [Topology ] . ( 953 sec) [ -46002.9752] [Topology ] . ( 959 sec) [ -46002.9684] [Topology ] . ( 969 sec) [ -46003.4267] [GTR parameters ] . ( 970 sec) [ -46003.4267] [Alpha ][ 0.524665] . ( 970 sec) [ -46003.4267] [Topology ] . ( 975 sec) [ -46003.3818] [Topology ] . ( 981 sec) [ -46004.0080] [Topology ] . Moving backward . ( 981 sec) [ -46002.2125] [Topology ] . ( 987 sec) [ -46002.0682] [Topology ] . ( 993 sec) [ -46002.1911] [Topology ] . Moving backward . ( 993 sec) [ -46001.7457] [Topology ] . ( 999 sec) [ -46001.5749] [Topology ] . ( 1004 sec) [ -46001.5162] [Topology ] . ( 1010 sec) [ -46001.4795] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1071 sec) [ -45999.3953] [Topology ] . ( 1077 sec) [ -45999.3861] [GTR parameters ] . ( 1077 sec) [ -45999.3861] [Alpha ][ 0.524665] . ( 1078 sec) [ -45999.3861] [Topology ] . ( 1083 sec) [ -45999.3173] [Topology ] . ( 1089 sec) [ -45999.2910] [Topology ] . ( 1094 sec) [ -45999.2735] [Topology ] . ( 1100 sec) [ -45999.2597] [Topology ] . ( 1105 sec) [ -45999.2479] [Topology ] . ( 1111 sec) [ -45999.2374] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1166 sec) [ -45999.1785] [Topology ] . ( 1169 sec) [ -45999.1776] [GTR parameters ] . ( 1170 sec) [ -45999.1776] [Alpha ][ 0.524665] . ( 1170 sec) [ -45999.1776] [Topology ] . ( 1175 sec) [ -45999.0388] [Topology ] . ( 1181 sec) [ -45998.9517] [Topology ] . ( 1187 sec) [ -45998.9217] [Topology ] . ( 1192 sec) [ -45998.9030] [Topology ] . ( 1198 sec) [ -45998.8894] [Topology ] . ( 1204 sec) [ -45998.8784] [Topology ] . ( 1209 sec) [ -45998.8691] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1264 sec) [ -45998.8086] [Topology ] . ( 1271 sec) [ -45998.8068] [GTR parameters ] . ( 1271 sec) [ -45998.8068] [Alpha ][ 0.524665] . ( 1271 sec) [ -45998.8068] [Topology ] . ( 1277 sec) [ -45998.8028] [Topology ] . ( 1283 sec) [ -45998.8008] [Topology ] . ( 1288 sec) [ -45998.7997] [Topology ] . ( 1294 sec) [ -45998.7991] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1349 sec) [ -45998.3504] [Topology ] . ( 1353 sec) [ -45998.3498] [GTR parameters ] . ( 1353 sec) [ -45998.3498] [Alpha ][ 0.524665] . ( 1353 sec) [ -45998.3498] [Topology ] . ( 1359 sec) [ -45998.2875] [Topology ] . ( 1364 sec) [ -45998.2766] [Topology ] . ( 1370 sec) [ -45998.2728] [Topology ] . ( 1376 sec) [ -45998.2712] [Topology ] . ( 1381 sec) [ -45998.2705] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1437 sec) [ -45998.2696] [Topology ] . ( 1439 sec) [ -45998.2692] [GTR parameters ] . ( 1439 sec) [ -45998.2692] [Alpha ][ 0.524665] . ( 1439 sec) [ -45998.2692] [Topology ] . ( 1445 sec) [ -45998.2635] [Topology ] . ( 1451 sec) [ -45998.2258] [Topology ] . ( 1456 sec) [ -45998.1315] [Topology ] . ( 1462 sec) [ -45998.0538] [Topology ] . ( 1468 sec) [ -45997.9915] [Topology ] . ( 1473 sec) [ -45997.9382] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1530 sec) [ -45997.6111] [Topology ] . ( 1532 sec) [ -45997.6104] [GTR parameters ] . ( 1532 sec) [ -45997.6083] [Alpha ][ 0.525380] . ( 1532 sec) [ -45997.6083] [Topology ] . ( 1538 sec) [ -45997.5720] [Topology ] . ( 1543 sec) [ -45997.5656] [Topology ] . ( 1549 sec) [ -45997.5635] [Topology ] . ( 1555 sec) [ -45997.5626] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1612 sec) [ -45996.2886] [Topology ] . ( 1613 sec) [ -45996.2857] [GTR parameters ] . ( 1614 sec) [ -45996.2857] [Alpha ][ 0.525380] . ( 1614 sec) [ -45996.2857] [Topology ] . ( 1620 sec) [ -45996.2439] [Topology ] . ( 1626 sec) [ -45996.2361] [Topology ] . ( 1632 sec) [ -45996.2333] [Topology ] . ( 1637 sec) [ -45996.2320] [Topology ] . ( 1643 sec) [ -45996.2314] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1700 sec) [ -45996.2249] [Topology ] . ( 1701 sec) [ -45996.2246] [GTR parameters ] . ( 1702 sec) [ -45996.2246] [Alpha ][ 0.525380] . ( 1702 sec) [ -45996.2246] [Topology ] . ( 1708 sec) [ -45996.2058] [Topology ] . ( 1714 sec) [ -45996.1996] [Topology ] . ( 1720 sec) [ -45996.1962] [Topology ] . ( 1725 sec) [ -45996.1938] [Topology ] . ( 1731 sec) [ -45996.1919] [Topology ] . ( 1737 sec) [ -45996.1904] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1794 sec) [ -45996.1902] [Topology ] . ( 1795 sec) [ -45996.1901] [GTR parameters ] . ( 1795 sec) [ -45996.1901] [Alpha ][ 0.525380] . ( 1795 sec) [ -45996.1901] [Topology ] . ( 1801 sec) [ -45996.1888] [Topology ] . ( 1807 sec) [ -45996.1876] [Topology ] . ( 1813 sec) [ -45996.1867] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1871 sec) [ -45996.1864] [GTR parameters ] . ( 1872 sec) [ -45996.1864] [Alpha ][ 0.525380] . ( 1872 sec) [ -45996.1864] [Topology ] . ( 1878 sec) [ -45996.1855] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1936 sec) [ -45996.1855] [GTR parameters ] . ( 1936 sec) [ -45996.1855] [Alpha ][ 0.525380] . ( 1937 sec) [ -45996.1855] [Topology ] . ( 1942 sec) [ -45996.1849] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 2069 sec) [ -48412.0933] [GTR parameters ] . ( 2070 sec) [ -47896.6604] [Alpha ][ 0.500960] . ( 2071 sec) [ -47896.0418] [11967] [depth= 1] . ( 2071 sec) [ -47889.7491] [11967] [depth= 1] . ( 2071 sec) [ -47889.7184] [11967] [depth= 1] . ( 2073 sec) [ -47884.8015] [11974] [depth= 1] . ( 2073 sec) [ -47884.1065] [11967] [depth= 1] . ( 2073 sec) [ -47880.9605] [11971] [depth= 1] . ( 2075 sec) [ -47880.5369] [11972] [depth= 1] . ( 2076 sec) [ -47774.6680] [11977] [depth= 1] . ( 2077 sec) [ -47746.4842] [11974] [depth= 1] . ( 2078 sec) [ -47691.9593] [11965] [depth= 10] . ( 2078 sec) [ -47678.9464] [11944] [depth= 7] . ( 2079 sec) [ -47669.6854] [11942] [depth= 1] . ( 2080 sec) [ -47665.6354] [11947] [depth= 1] . ( 2080 sec) [ -47658.1171] [11949] [depth= 1] . ( 2080 sec) [ -47653.7020] [11951] [depth= 1] . ( 2082 sec) [ -47638.8318] [11949] [depth= 1] . ( 2082 sec) [ -47590.0596] [11932] [depth= 8] . ( 2083 sec) [ -47526.5165] [11930] [depth= 2] . ( 2083 sec) [ -47522.6803] [11935] [depth= 2] . ( 2084 sec) [ -47520.1468] [11938] [depth= 1] . ( 2085 sec) [ -47509.4594] [11924] [depth= 1] . ( 2085 sec) [ -47504.1025] [11926] [depth= 1] . ( 2086 sec) [ -47503.9077] [11923] [depth= 1] . ( 2086 sec) [ -47435.2032] [11921] [depth= 1] . ( 2087 sec) [ -47434.8112] [11919] [depth= 1] . ( 2087 sec) [ -47434.0884] [11921] [depth= 1] . ( 2089 sec) [ -47408.3802] [11912] [depth= 1] . ( 2089 sec) [ -47406.8051] [11919] [depth= 1] . ( 2090 sec) [ -47398.9314] [11917] [depth= 2] . ( 2090 sec) [ -47395.1014] [11917] [depth= 1] . ( 2091 sec) [ -47393.4723] [11908] [depth= 11] . ( 2091 sec) [ -47322.7419] [11889] [depth= 11] . ( 2092 sec) [ -47322.5987] [11890] [depth= 2] . ( 2092 sec) [ -47317.0897] [11889] [depth= 2] . ( 2092 sec) [ -47306.9571] [11889] [depth= 1] . ( 2093 sec) [ -47296.9314] [11891] [depth= 2] . ( 2094 sec) [ -47293.6942] [11892] [depth= 1] . ( 2094 sec) [ -47292.2287] [11891] [depth= 1] . ( 2095 sec) [ -47291.8039] [11889] [depth= 1] . ( 2095 sec) [ -47291.1975] [11889] [depth= 1] . ( 2096 sec) [ -47268.1630] [11883] [depth= 1] . ( 2096 sec) [ -47260.3346] [11883] [depth= 1] . ( 2097 sec) [ -47233.3725] [11887] [depth= 2] . ( 2097 sec) [ -47220.1232] [11890] [depth= 1] . ( 2097 sec) [ -47215.6834] [11884] [depth= 3] . ( 2098 sec) [ -47129.5826] [11848] [depth= 10] . ( 2098 sec) [ -47121.1510] [11849] [depth= 1] . ( 2099 sec) [ -47119.5980] [11848] [depth= 1] . ( 2099 sec) [ -47112.2688] [11840] [depth= 7] . ( 2100 sec) [ -47107.3666] [11838] [depth= 2] . ( 2100 sec) [ -47086.7604] [11838] [depth= 2] . ( 2101 sec) [ -47060.5077] [11827] [depth= 8] . ( 2102 sec) [ -47058.7698] [11818] [depth= 1] . ( 2102 sec) [ -47057.6055] [11826] [depth= 1] . ( 2103 sec) [ -47040.7615] [11819] [depth= 9] . ( 2104 sec) [ -47040.5780] [11822] [depth= 1] . ( 2105 sec) [ -47039.6206] [11824] [depth= 4] . ( 2106 sec) [ -47039.3092] [11825] [depth= 4] . ( 2106 sec) [ -47034.7995] [11817] [depth= 1] . ( 2106 sec) [ -47029.0497] [11825] [depth= 1] . ( 2107 sec) [ -47025.7197] [11827] [depth= 4] . ( 2109 sec) [ -47012.8470] [11821] [depth= 9] . ( 2109 sec) [ -46954.0708] [11801] [depth= 5] . ( 2110 sec) [ -46930.9528] [11792] [depth= 1] . ( 2110 sec) [ -46929.7693] [11791] [depth= 2] . ( 2111 sec) [ -46929.1534] [11795] [depth= 1] . ( 2112 sec) [ -46927.0353] [11794] [depth= 1] . ( 2112 sec) [ -46923.5160] [11795] [depth= 1] . ( 2113 sec) [ -46918.5777] [11796] [depth= 1] . ( 2114 sec) [ -46916.9645] [11795] [depth= 2] . ( 2114 sec) [ -46911.5131] [11789] [depth= 1] . ( 2115 sec) [ -46903.2673] [11788] [depth= 2] . ( 2115 sec) [ -46900.6212] [11792] [depth= 1] . ( 2117 sec) [ -46898.1654] [11790] [depth= 3] . ( 2117 sec) [ -46897.1996] [11793] [depth= 1] . ( 2118 sec) [ -46893.8600] [11790] [depth= 2] . ( 2119 sec) [ -46893.6068] [11793] [depth= 1] . ( 2120 sec) [ -46886.2323] [11797] [depth= 1] . ( 2121 sec) [ -46880.9043] [11793] [depth= 1] . ( 2122 sec) [ -46878.7707] [11789] [depth= 1] . ( 2122 sec) [ -46876.1304] [11788] [depth= 3] . ( 2123 sec) [ -46873.5800] [11786] [depth= 3] . ( 2123 sec) [ -46873.5416] [11783] [depth= 1] . ( 2123 sec) [ -46868.6886] [11791] [depth= 1] . ( 2124 sec) [ -46856.4919] [11783] [depth= 1] . ( 2124 sec) [ -46854.0401] [11787] [depth= 1] . ( 2124 sec) [ -46851.9353] [11787] [depth= 2] . ( 2125 sec) [ -46849.5299] [11792] [depth= 2] . ( 2125 sec) [ -46835.0678] [11792] [depth= 1] . ( 2126 sec) [ -46834.9489] [11790] [depth= 2] . ( 2126 sec) [ -46834.5417] [11788] [depth= 1] . ( 2127 sec) [ -46821.2412] [11784] [depth= 1] . ( 2127 sec) [ -46817.2874] [11781] [depth= 1] . ( 2128 sec) [ -46815.8002] [11781] [depth= 1] . ( 2129 sec) [ -46809.8727] [11785] [depth= 1] . ( 2130 sec) [ -46809.2413] [11786] [depth= 2] . ( 2130 sec) [ -46807.2359] [11789] [depth= 1] . ( 2131 sec) [ -46799.5849] [11780] [depth= 2] . ( 2133 sec) [ -46791.5239] [11784] [depth= 1] . ( 2133 sec) [ -46785.9409] [11781] [depth= 3] . ( 2134 sec) [ -46783.5217] [11783] [depth= 1] . ( 2134 sec) [ -46783.1387] [11781] [depth= 1] . ( 2137 sec) [ -46779.9018] [11786] [depth= 1] . ( 2138 sec) [ -46777.8240] [11781] [depth= 1] . ( 2138 sec) [ -46770.6025] [11778] [depth= 1] . ( 2139 sec) [ -46756.5826] [11779] [depth= 1] . ( 2139 sec) [ -46748.1042] [11781] [depth= 1] . ( 2140 sec) [ -46718.7961] [11781] [depth= 1] . ( 2141 sec) [ -46702.6952] [11777] [depth= 1] . ( 2141 sec) [ -46686.1965] [11776] [depth= 4] . ( 2142 sec) [ -46685.9180] [11778] [depth= 1] . ( 2142 sec) [ -46683.5880] [11774] [depth= 1] . ( 2143 sec) [ -46681.9225] [11773] [depth= 2] . ( 2143 sec) [ -46672.5150] [11764] [depth= 1] . ( 2144 sec) [ -46669.2363] [11761] [depth= 2] . ( 2145 sec) [ -46666.2447] [11760] [depth= 1] . ( 2146 sec) [ -46665.1375] [11757] [depth= 4] . ( 2147 sec) [ -46660.9781] [11758] [depth= 1] . ( 2147 sec) [ -46640.3396] [11761] [depth= 1] . ( 2148 sec) [ -46622.5552] [11765] [depth= 1] . ( 2149 sec) [ -46621.7140] [11770] [depth= 1] . ( 2149 sec) [ -46616.0759] [11765] [depth= 1] . ( 2150 sec) [ -46598.5865] [11757] [depth= 2] . ( 2150 sec) [ -46593.6260] [11758] [depth= 1] . ( 2151 sec) [ -46591.2225] [11758] [depth= 1] . ( 2152 sec) [ -46588.8665] [11757] [depth= 1] . ( 2152 sec) [ -46574.6584] [11758] [depth= 1] . ( 2154 sec) [ -46571.8866] [11762] [depth= 1] . ( 2154 sec) [ -46569.8995] [11758] [depth= 1] . ( 2157 sec) [ -46569.8870] [11760] [depth= 1] . ( 2157 sec) [ -46568.3421] [11759] [depth= 1] . ( 2158 sec) [ -46567.7925] [11760] [depth= 3] . ( 2159 sec) [ -46566.2911] [11759] [depth= 2] . ( 2160 sec) [ -46565.7276] [11761] [depth= 1] . ( 2160 sec) [ -46562.5362] [11761] [depth= 1] . ( 2161 sec) [ -46561.5999] [11759] [depth= 1] . ( 2161 sec) [ -46559.9442] [11761] [depth= 2] . ( 2162 sec) [ -46555.7153] [11762] [depth= 1] . ( 2163 sec) [ -46550.4855] [11762] [depth= 2] . ( 2163 sec) [ -46550.3427] [11759] [depth= 2] . ( 2164 sec) [ -46549.7750] [11757] [depth= 1] . ( 2164 sec) [ -46547.5104] [11759] [depth= 1] . ( 2165 sec) [ -46547.2786] [11760] [depth= 1] . ( 2168 sec) [ -46286.4111] [Branch lengths ] . ( 2180 sec) [ -46239.2082] [GTR parameters ] . ( 2181 sec) [ -46239.0351] [Alpha ][ 0.492531] . ( 2182 sec) [ -46238.1935] [11760] [depth= 1] . ( 2184 sec) [ -46237.9999] [11765] [depth= 1] . ( 2185 sec) [ -46234.2504] [11767] [depth= 1] . ( 2187 sec) [ -46226.1767] [11761] [depth= 1] . ( 2189 sec) [ -46212.5414] [11746] [depth= 5] . ( 2190 sec) [ -46211.4208] [11738] [depth= 6] . ( 2195 sec) [ -46203.3408] [11739] [depth= 6] . ( 2197 sec) [ -46194.1187] [11735] [depth= 6] . ( 2198 sec) [ -46193.4564] [11731] [depth= 1] . ( 2201 sec) [ -46193.4316] [11731] [depth= 2] . ( 2207 sec) [ -46193.0118] [11728] [depth= 2] . ( 2208 sec) [ -46190.4188] [11718] [depth= 6] . ( 2209 sec) [ -46189.5225] [11716] [depth= 1] . ( 2209 sec) [ -46183.2468] [11710] [depth= 8] . ( 2211 sec) [ -46177.9005] [11706] [depth= 2] . ( 2213 sec) [ -46176.1522] [11705] [depth= 3] . ( 2213 sec) [ -46174.7361] [11707] [depth= 1] . ( 2215 sec) [ -46173.7610] [11707] [depth= 2] . ( 2216 sec) [ -46169.1084] [11698] [depth= 3] . ( 2218 sec) [ -46168.0396] [11702] [depth= 3] . ( 2218 sec) [ -46167.2814] [11702] [depth= 2] . ( 2219 sec) [ -46166.9918] [11700] [depth= 2] . ( 2220 sec) [ -46164.9527] [11700] [depth= 2] . ( 2221 sec) [ -46162.7533] [11703] [depth= 1] . ( 2222 sec) [ -46161.5908] [11702] [depth= 1] . ( 2226 sec) [ -46159.7393] [11704] [depth= 1] . ( 2228 sec) [ -46159.4914] [11705] [depth= 1] . ( 2232 sec) [ -46158.3994] [11707] [depth= 3] . ( 2235 sec) [ -46157.8064] [11711] [depth= 1] . ( 2235 sec) [ -46157.7827] [11709] [depth= 1] . ( 2237 sec) [ -46157.4320] [11713] [depth= 1] . ( 2237 sec) [ -46157.1097] [11712] [depth= 1] . ( 2239 sec) [ -46156.4321] [11710] [depth= 2] . ( 2241 sec) [ -46154.3376] [11713] [depth= 1] . ( 2244 sec) [ -46152.7799] [11713] [depth= 1] . ( 2245 sec) [ -46152.3236] [11718] [depth= 1] . ( 2247 sec) [ -46151.3614] [11721] [depth= 1] . ( 2247 sec) [ -46150.6616] [11718] [depth= 1] . ( 2249 sec) [ -46149.6522] [11721] [depth= 1] . ( 2250 sec) [ -46147.5609] [11716] [depth= 1] . ( 2253 sec) [ -46074.6548] [Branch lengths ] . ( 2261 sec) [ -46071.6534] [GTR parameters ] . ( 2261 sec) [ -46070.1542] [Alpha ][ 0.515258] . ( 2262 sec) [ -46069.8580] [11716] [depth= 1] . ( 2263 sec) [ -46069.5146] [11714] [depth= 1] . ( 2264 sec) [ -46069.4072] [11716] [depth= 1] . ( 2273 sec) [ -46067.8342] [11717] [depth= 6] . ( 2275 sec) [ -46067.3688] [11714] [depth= 1] . ( 2278 sec) [ -46067.3454] [11714] [depth= 2] . ( 2283 sec) [ -46067.0657] [11719] [depth= 1] . ( 2284 sec) [ -46066.7667] [11720] [depth= 1] . ( 2285 sec) [ -46066.6845] [11719] [depth= 1] . ( 2294 sec) [ -46066.5830] [11721] [depth= 1] . ( 2297 sec) [ -46059.0482] [11723] [depth= 6] . ( 2298 sec) [ -46058.9198] [11723] [depth= 1] . ( 2304 sec) [ -46058.8770] [11719] [depth= 1] . ( 2311 sec) [ -46058.3983] [11722] [depth= 3] . ( 2316 sec) [ -46057.1442] [11722] [depth= 1] . ( 2319 sec) [ -46056.6222] [11727] [depth= 1] . ( 2321 sec) [ -46055.7265] [11722] [depth= 1] . ( 2322 sec) [ -46050.7903] [11718] [depth= 1] . ( 2328 sec) [ -46050.5994] [11718] [depth= 1] . ( 2328 sec) [ -46050.4476] [11719] [depth= 1] . ( 2332 sec) [ -46046.3788] [11721] [depth= 2] . ( 2338 sec) [ -46046.1548] [11722] [depth= 1] . ( 2339 sec) [ -46045.4089] [11727] [depth= 1] . ( 2343 sec) [ -46009.3312] [Branch lengths ] . ( 2353 sec) [ -46008.5662] [GTR parameters ] . ( 2353 sec) [ -46008.0436] [Alpha ][ 0.528324] . ( 2354 sec) [ -46007.8876] [11727] [depth= 1] . ( 2377 sec) [ -46007.6337] [11728] [depth= 1] . ( 2388 sec) [ -46007.5380] [11725] [depth= 1] . ( 2437 sec) [ -45992.9999] [Branch lengths ] . ( 2442 sec) [ -45992.7388] [GTR parameters ] . ( 2443 sec) [ -45992.6961] [Alpha ][ 0.531950] . ( 2444 sec) [ -45992.6301] [11725] [depth= 1] . ( 2468 sec) [ -45992.3213] [11729] [depth= 2] . ( 2539 sec) [ -45986.2281] [Branch lengths ] . ( 2549 sec) [ -45986.0998] [GTR parameters ] . ( 2549 sec) [ -45986.0998] [Alpha ][ 0.531950] . ( 2550 sec) [ -45986.0760] [11729] [depth= 1] . ( 2561 sec) [ -45919.5415] [11746] [depth= 14] . ( 2564 sec) [ -45919.0363] [11755] [depth= 1] . ( 2567 sec) [ -45918.5898] [11761] [depth= 1] . ( 2637 sec) [ -45911.9589] [Branch lengths ] . ( 2643 sec) [ -45911.5804] [GTR parameters ] . ( 2644 sec) [ -45911.5450] [Alpha ][ 0.534885] . ( 2655 sec) [ -45911.4020] [11755] [depth= 1] . ( 2737 sec) [ -45908.8496] [Branch lengths ] . ( 2738 sec) [ -45908.8302] [GTR parameters ] . ( 2739 sec) [ -45908.8266] [Alpha ][ 0.535752] . ( 2828 sec) [ -45907.9116] [Branch lengths ] . ( 2833 sec) [ -45906.9405] [11757] [depth= 1] . ( 2847 sec) [ -45901.2874] [11862] [depth= 8] . ( 2858 sec) [ -45898.4243] [11886] [depth= 6] . ( 2871 sec) [ -45897.3031] [11973] [depth= 4] . ( 2889 sec) [ -45896.7487] [11966] [depth= 1] . ( 2918 sec) [ -45896.6851] [11961] [depth= 6] . ( 2948 sec) [ -45896.2109] [11961] [depth= 1] . ( 3046 sec) [ -45894.9374] [11961] [depth= 1] . ( 3080 sec) [ -45894.5000] [11965] [depth= 1] . ( 3085 sec) [ -45894.1600] [11961] [depth= 1] . ( 3089 sec) [ -45892.6795] [11959] [depth= 2] . ( 3118 sec) [ -45884.7326] [Branch lengths ] . ( 3127 sec) [ -45884.4536] [GTR parameters ] . ( 3128 sec) [ -45884.2199] [Alpha ][ 0.527707] . ( 3154 sec) [ -45882.7577] [11965] [depth= 1] . ( 3155 sec) [ -45880.0747] [11939] [depth= 1] . ( 3370 sec) [ -45879.9974] [11943] [depth= 1] . ( 3374 sec) [ -45879.8872] [11939] [depth= 1] . ( 3405 sec) [ -45877.2060] [Branch lengths ] . ( 3411 sec) [ -45877.1917] [GTR parameters ] . ( 3411 sec) [ -45877.1900] [Alpha ][ 0.528410] . ( 3430 sec) [ -45863.9410] [11881] [depth= 3] . ( 3665 sec) [ -45863.0162] [Branch lengths ] . ( 3670 sec) [ -45863.0016] [GTR parameters ] . ( 3671 sec) [ -45862.8792] [Alpha ][ 0.534397] . ( 3689 sec) [ -45862.6956] [11877] [depth= 1] . ( 3929 sec) [ -45862.1857] [Branch lengths ] . ( 3933 sec) [ -45862.1793] [GTR parameters ] . ( 3933 sec) [ -45862.1792] [Alpha ][ 0.535180] . ( 3933 sec) [ -45862.1792] [Topology ] . ( 3939 sec) [ -45862.0868] [Topology ] . ( 3944 sec) [ -45862.0568] [Topology ] . ( 3950 sec) [ -45862.0422] [Topology ] . ( 3955 sec) [ -45862.0343] [Topology ] . ( 3961 sec) [ -45862.0297] [Topology ] . ( 3966 sec) [ -45862.0268] [Topology ] . ( 3968 sec) [ -45862.0263] [GTR parameters ] . ( 3968 sec) [ -45862.0261] [Alpha ][ 0.534645] . ( 3968 sec) [ -45862.0261] [Topology ] . ( 3974 sec) [ -45862.0239] [Topology ] . ( 3980 sec) [ -45862.0225] [Topology ] . ( 3985 sec) [ -45862.0214] [Topology ] . ( 3991 sec) [ -45862.0206] [Topology ] . ( 3992 sec) [ -45862.0200] [GTR parameters ] . ( 3993 sec) [ -45862.0200] [Alpha ][ 0.534645] . ( 3993 sec) [ -45862.0200] [Topology ] . ( 3999 sec) [ -45862.0193] [Topology ] . ( 4000 sec) [ -45862.0193] [GTR parameters ] . ( 4000 sec) [ -45862.0193] [Alpha ][ 0.534645] . Checking for NNIs, optimizing five branches... . ( 4053 sec) [ -45861.8842] [Topology ] . Checking for NNIs, optimizing five branches... . ( 4105 sec) [ -45861.8069] [Topology ] . Checking for NNIs, optimizing five branches... . ( 4156 sec) [ -45861.7437] [Topology ] . Checking for NNIs, optimizing five branches... . ( 4210 sec) [ -45861.0256] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -45996.184860 . Log likelihood obtained after SPR moves : -45861.025631 . Log likelihood of the current tree: -45861.025631. . Printing the most likely tree in file 'nucleic_M2623_139x1044_2006.phy_phyml_tree.txt'... . Best log likelihood : -45861.025631 . Time used 1h11m6s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 13591.68user 0.00system 3:50:56elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps