.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : nucleic_M2707_115x1677_2006.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : yes . Number of random starting trees : 5 . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 759 patterns found. (out of a total of 1677 sites) . 924 sites without polymorphism (55.10%). . [Random start 1/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . This analysis requires at least 46Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 4 sec) [ -44318.1596] [GTR parameters ] . ( 5 sec) [ -43315.7360] [Alpha ][ 0.500960] . ( 6 sec) [ -42186.1653] [ 4982] [depth= 15] . ( 6 sec) [ -41046.8146] [ 4881] [depth= 17] . ( 6 sec) [ -41006.7521] [ 4878] [depth= 1] . ( 7 sec) [ -39283.6059] [ 4680] [depth= 11] . ( 7 sec) [ -39122.6786] [ 4680] [depth= 1] . ( 8 sec) [ -38966.0513] [ 4667] [depth= 10] . ( 8 sec) [ -38964.0471] [ 4665] [depth= 7] . ( 8 sec) [ -38960.8739] [ 4612] [depth= 9] . ( 8 sec) [ -38944.1319] [ 4610] [depth= 1] . ( 9 sec) [ -38863.6429] [ 4610] [depth= 7] . ( 9 sec) [ -38816.5774] [ 4606] [depth= 3] . ( 10 sec) [ -38776.1962] [ 4605] [depth= 7] . ( 10 sec) [ -38735.4628] [ 4599] [depth= 4] . ( 10 sec) [ -38731.8910] [ 4599] [depth= 2] . ( 11 sec) [ -37963.6196] [ 4596] [depth= 4] . ( 11 sec) [ -37805.8885] [ 4593] [depth= 8] . ( 11 sec) [ -37645.6887] [ 4580] [depth= 9] . ( 12 sec) [ -37602.3924] [ 4574] [depth= 9] . ( 12 sec) [ -37543.1153] [ 4577] [depth= 7] . ( 12 sec) [ -37537.4793] [ 4574] [depth= 3] . ( 13 sec) [ -37493.2051] [ 4574] [depth= 3] . ( 13 sec) [ -37239.3034] [ 4554] [depth= 5] . ( 13 sec) [ -36735.4719] [ 4570] [depth= 1] . ( 13 sec) [ -36675.6881] [ 4557] [depth= 1] . ( 14 sec) [ -36284.9555] [ 4447] [depth= 21] . ( 14 sec) [ -36057.0024] [ 4413] [depth= 22] . ( 14 sec) [ -36045.9319] [ 4442] [depth= 14] . ( 15 sec) [ -36004.4769] [ 4434] [depth= 6] . ( 15 sec) [ -35959.5002] [ 4436] [depth= 3] . ( 15 sec) [ -35910.5634] [ 4434] [depth= 9] . ( 16 sec) [ -35906.5630] [ 4432] [depth= 4] . ( 16 sec) [ -35637.6511] [ 4430] [depth= 12] . ( 16 sec) [ -35598.2786] [ 4424] [depth= 7] . ( 16 sec) [ -35596.5515] [ 4424] [depth= 1] . ( 17 sec) [ -35565.7932] [ 4421] [depth= 15] . ( 17 sec) [ -35509.9806] [ 4411] [depth= 22] . ( 17 sec) [ -35481.1026] [ 4409] [depth= 7] . ( 18 sec) [ -35445.0016] [ 4400] [depth= 7] . ( 18 sec) [ -35440.3582] [ 4400] [depth= 16] . ( 18 sec) [ -35425.0375] [ 4395] [depth= 9] . ( 18 sec) [ -35422.3721] [ 4395] [depth= 1] . ( 18 sec) [ -35152.3729] [ 4367] [depth= 9] . ( 18 sec) [ -34636.2902] [ 4366] [depth= 23] . ( 19 sec) [ -34388.3283] [ 4243] [depth= 24] . ( 19 sec) [ -34307.5006] [ 4242] [depth= 1] . ( 19 sec) [ -33564.3864] [ 4165] [depth= 21] . ( 19 sec) [ -33539.3391] [ 4166] [depth= 12] . ( 20 sec) [ -33134.5895] [ 4038] [depth= 7] . ( 20 sec) [ -33126.8507] [ 4043] [depth= 1] . ( 20 sec) [ -33041.4332] [ 4034] [depth= 14] . ( 20 sec) [ -31233.6837] [ 4032] [depth= 12] . ( 20 sec) [ -30468.1584] [ 4031] [depth= 3] . ( 21 sec) [ -30369.2672] [ 4027] [depth= 6] . ( 21 sec) [ -30240.5068] [ 4018] [depth= 18] . ( 21 sec) [ -30165.3481] [ 3999] [depth= 18] . ( 21 sec) [ -29288.6185] [ 3996] [depth= 12] . ( 22 sec) [ -27999.6758] [ 4001] [depth= 2] . ( 22 sec) [ -27735.7243] [ 3853] [depth= 19] . ( 22 sec) [ -27731.3734] [ 3853] [depth= 1] . ( 22 sec) [ -27537.5171] [ 3748] [depth= 21] . ( 22 sec) [ -26732.1151] [ 3710] [depth= 18] . ( 23 sec) [ -26705.6145] [ 3710] [depth= 2] . ( 23 sec) [ -26604.1863] [ 3704] [depth= 3] . ( 23 sec) [ -26345.7655] [ 3698] [depth= 9] . ( 23 sec) [ -26159.3245] [ 3684] [depth= 1] . ( 24 sec) [ -25957.8366] [ 3676] [depth= 15] . ( 24 sec) [ -25626.5911] [ 3639] [depth= 5] . ( 24 sec) [ -25557.1579] [ 3624] [depth= 8] . ( 24 sec) [ -25556.2505] [ 3624] [depth= 1] . ( 24 sec) [ -25525.0222] [ 3619] [depth= 8] . ( 25 sec) [ -25455.0267] [ 3601] [depth= 3] . ( 25 sec) [ -25450.4885] [ 3601] [depth= 1] . ( 25 sec) [ -24513.4155] [ 3578] [depth= 11] . ( 25 sec) [ -24485.4150] [ 3578] [depth= 1] . ( 25 sec) [ -24484.1049] [ 3578] [depth= 2] . ( 26 sec) [ -23719.2194] [ 3488] [depth= 2] . ( 26 sec) [ -23501.4014] [ 3429] [depth= 10] . ( 26 sec) [ -23035.2666] [ 3430] [depth= 1] . ( 26 sec) [ -22504.8814] [ 3427] [depth= 1] . ( 26 sec) [ -22229.0389] [ 3293] [depth= 13] . ( 27 sec) [ -22181.6516] [ 3284] [depth= 3] . ( 27 sec) [ -21973.5401] [ 3238] [depth= 25] . ( 27 sec) [ -21774.5087] [ 3224] [depth= 20] . ( 27 sec) [ -21643.9290] [ 3189] [depth= 2] . ( 28 sec) [ -21443.8898] [ 3078] [depth= 12] . ( 28 sec) [ -20060.2803] [ 3065] [depth= 22] . ( 28 sec) [ -19365.7953] [ 2951] [depth= 25] . ( 28 sec) [ -18907.5524] [ 2937] [depth= 20] . ( 29 sec) [ -18810.6286] [ 2918] [depth= 2] . ( 29 sec) [ -18749.8085] [ 2901] [depth= 1] . ( 29 sec) [ -18476.7380] [ 2802] [depth= 13] . ( 29 sec) [ -18297.9932] [ 2788] [depth= 15] . ( 30 sec) [ -18150.3783] [ 2789] [depth= 1] . ( 30 sec) [ -18007.6816] [ 2770] [depth= 10] . ( 30 sec) [ -17950.7985] [ 2769] [depth= 1] . ( 30 sec) [ -17942.6160] [ 2733] [depth= 3] . ( 30 sec) [ -17942.2953] [ 2736] [depth= 1] . ( 31 sec) [ -17760.7115] [ 2706] [depth= 7] . ( 31 sec) [ -17690.3804] [ 2706] [depth= 4] . ( 31 sec) [ -16422.9870] [ 2699] [depth= 9] . ( 31 sec) [ -16416.8992] [ 2700] [depth= 13] . ( 32 sec) [ -16391.6971] [ 2698] [depth= 8] . ( 32 sec) [ -16378.9006] [ 2694] [depth= 2] . ( 32 sec) [ -16046.8571] [ 2693] [depth= 10] . ( 32 sec) [ -15928.4133] [ 2670] [depth= 1] . ( 33 sec) [ -15814.7264] [ 2661] [depth= 9] . ( 33 sec) [ -15757.0269] [ 2659] [depth= 7] . ( 33 sec) [ -15735.8666] [ 2658] [depth= 18] . ( 33 sec) [ -15711.3847] [ 2654] [depth= 7] . ( 34 sec) [ -15709.5514] [ 2653] [depth= 1] . ( 34 sec) [ -15611.8160] [ 2643] [depth= 13] . ( 34 sec) [ -15404.1357] [ 2641] [depth= 10] . ( 34 sec) [ -15311.0422] [ 2630] [depth= 9] . ( 34 sec) [ -15185.6257] [ 2605] [depth= 5] . ( 35 sec) [ -15132.9946] [ 2603] [depth= 6] . ( 35 sec) [ -15126.2896] [ 2603] [depth= 7] . ( 35 sec) [ -15107.2213] [ 2585] [depth= 8] . ( 35 sec) [ -15099.6779] [ 2585] [depth= 1] . ( 35 sec) [ -15034.0262] [ 2580] [depth= 6] . ( 36 sec) [ -15026.4019] [ 2580] [depth= 3] . ( 36 sec) [ -15020.1158] [ 2580] [depth= 1] . ( 36 sec) [ -15019.9558] [ 2580] [depth= 3] . ( 36 sec) [ -15009.7841] [ 2579] [depth= 2] . ( 36 sec) [ -15007.6170] [ 2579] [depth= 1] . ( 37 sec) [ -14994.4267] [ 2578] [depth= 8] . ( 37 sec) [ -14993.4574] [ 2578] [depth= 1] . ( 37 sec) [ -14993.3812] [ 2578] [depth= 1] . ( 37 sec) [ -14992.8662] [ 2578] [depth= 12] . ( 38 sec) [ -14992.4523] [ 2578] [depth= 2] . ( 38 sec) [ -14992.1276] [ 2577] [depth= 7] . ( 38 sec) [ -14784.1551] [ 2577] [depth= 3] . ( 38 sec) [ -14753.1944] [ 2566] [depth= 8] . ( 38 sec) [ -14709.1062] [ 2565] [depth= 3] . ( 39 sec) [ -14576.2050] [ 2567] [depth= 3] . ( 39 sec) [ -14542.1491] [ 2562] [depth= 1] . ( 39 sec) [ -14527.4584] [ 2556] [depth= 8] . ( 39 sec) [ -14502.1093] [ 2556] [depth= 2] . ( 39 sec) [ -14452.6205] [ 2551] [depth= 21] . ( 40 sec) [ -14441.7898] [ 2552] [depth= 17] . ( 40 sec) [ -14392.1974] [ 2542] [depth= 18] . ( 40 sec) [ -13937.3726] [ 2502] [depth= 24] . ( 40 sec) [ -13838.7965] [ 2500] [depth= 7] . ( 41 sec) [ -13750.0704] [ 2488] [depth= 8] . ( 41 sec) [ -13747.2310] [ 2487] [depth= 2] . ( 41 sec) [ -13729.5140] [ 2487] [depth= 4] . ( 41 sec) [ -13673.1866] [ 2486] [depth= 2] . ( 41 sec) [ -13664.5673] [ 2486] [depth= 1] . ( 42 sec) [ -13653.5724] [ 2487] [depth= 1] . ( 42 sec) [ -13643.9560] [ 2485] [depth= 5] . ( 42 sec) [ -13638.7052] [ 2484] [depth= 3] . ( 42 sec) [ -13635.7266] [ 2482] [depth= 11] . ( 42 sec) [ -13625.5486] [ 2481] [depth= 2] . ( 43 sec) [ -13624.0997] [ 2485] [depth= 2] . ( 43 sec) [ -13616.3918] [ 2484] [depth= 1] . ( 43 sec) [ -13582.2673] [ 2472] [depth= 3] . ( 43 sec) [ -13581.6554] [ 2473] [depth= 1] . ( 44 sec) [ -13565.3171] [ 2474] [depth= 2] . ( 44 sec) [ -13560.1650] [ 2471] [depth= 4] . ( 44 sec) [ -13559.8482] [ 2471] [depth= 1] . ( 44 sec) [ -13552.2610] [ 2470] [depth= 15] . ( 45 sec) [ -13517.5472] [ 2461] [depth= 2] . ( 45 sec) [ -13495.3237] [ 2455] [depth= 4] . ( 45 sec) [ -13467.3092] [ 2453] [depth= 1] . ( 45 sec) [ -13466.8057] [ 2453] [depth= 1] . ( 45 sec) [ -13441.7358] [ 2453] [depth= 6] . ( 46 sec) [ -13439.6877] [ 2452] [depth= 2] . ( 46 sec) [ -13438.7767] [ 2453] [depth= 1] . ( 46 sec) [ -13404.6253] [ 2448] [depth= 9] . ( 47 sec) [ -13404.2488] [ 2448] [depth= 6] . ( 47 sec) [ -13400.1653] [ 2436] [depth= 8] . ( 47 sec) [ -13365.5818] [ 2434] [depth= 5] . ( 47 sec) [ -13365.2753] [ 2435] [depth= 1] . ( 47 sec) [ -13348.7697] [ 2435] [depth= 21] . ( 48 sec) [ -13266.7725] [ 2414] [depth= 20] . ( 48 sec) [ -13266.5566] [ 2414] [depth= 14] . ( 48 sec) [ -13246.7555] [ 2413] [depth= 13] . ( 48 sec) [ -13245.1704] [ 2413] [depth= 2] . ( 49 sec) [ -13243.5592] [ 2413] [depth= 2] . ( 49 sec) [ -13243.4686] [ 2413] [depth= 2] . ( 49 sec) [ -13232.8673] [ 2412] [depth= 1] . ( 49 sec) [ -13174.5049] [ 2405] [depth= 13] . ( 50 sec) [ -13170.1457] [ 2405] [depth= 6] . ( 50 sec) [ -13162.2533] [ 2405] [depth= 4] . ( 50 sec) [ -13098.6376] [ 2405] [depth= 2] . ( 50 sec) [ -13095.2518] [ 2405] [depth= 1] . ( 50 sec) [ -13093.8376] [ 2406] [depth= 1] . ( 51 sec) [ -13092.2551] [ 2406] [depth= 1] . ( 51 sec) [ -13087.5323] [ 2406] [depth= 3] . ( 51 sec) [ -13065.1468] [ 2403] [depth= 9] . ( 51 sec) [ -13048.9491] [ 2400] [depth= 1] . ( 52 sec) [ -13034.8896] [ 2397] [depth= 2] . ( 52 sec) [ -13016.7033] [ 2397] [depth= 2] . ( 52 sec) [ -13015.9722] [ 2397] [depth= 5] . ( 52 sec) [ -13008.4033] [ 2397] [depth= 4] . ( 53 sec) [ -13008.2870] [ 2397] [depth= 2] . ( 53 sec) [ -13007.9829] [ 2397] [depth= 1] . ( 53 sec) [ -13007.9508] [ 2397] [depth= 1] . ( 53 sec) [ -13000.0569] [ 2397] [depth= 7] . ( 54 sec) [ -12983.5312] [ 2395] [depth= 2] . ( 54 sec) [ -12916.8265] [ 2387] [depth= 4] . ( 54 sec) [ -12901.1960] [ 2387] [depth= 2] . ( 54 sec) [ -12880.8886] [ 2387] [depth= 3] . ( 55 sec) [ -12879.6792] [ 2388] [depth= 1] . ( 55 sec) [ -12868.9680] [ 2387] [depth= 1] . ( 55 sec) [ -12801.9909] [ 2384] [depth= 21] . ( 55 sec) [ -12799.4614] [ 2384] [depth= 2] . ( 56 sec) [ -12775.9500] [ 2377] [depth= 6] . ( 56 sec) [ -12773.2785] [ 2377] [depth= 1] . ( 57 sec) [ -12772.4027] [ 2377] [depth= 1] . ( 57 sec) [ -12726.9414] [ 2373] [depth= 15] . ( 58 sec) [ -12722.6604] [ 2373] [depth= 7] . ( 58 sec) [ -12721.1799] [ 2375] [depth= 1] . ( 58 sec) [ -12715.7231] [ 2374] [depth= 1] . ( 59 sec) [ -12713.0518] [ 2374] [depth= 2] . ( 59 sec) [ -12627.5963] [ 2374] [depth= 1] . ( 59 sec) [ -12574.5515] [ 2373] [depth= 2] . ( 59 sec) [ -12519.2915] [ 2363] [depth= 18] . ( 60 sec) [ -12473.8119] [ 2356] [depth= 3] . ( 60 sec) [ -12471.2360] [ 2356] [depth= 15] . ( 60 sec) [ -12470.4125] [ 2357] [depth= 2] . ( 61 sec) [ -12468.5486] [ 2360] [depth= 3] . ( 61 sec) [ -12467.2886] [ 2360] [depth= 1] . ( 61 sec) [ -12467.2250] [ 2359] [depth= 1] . ( 61 sec) [ -12466.2597] [ 2359] [depth= 1] . ( 62 sec) [ -12452.1478] [ 2364] [depth= 3] . ( 62 sec) [ -12437.5892] [ 2362] [depth= 3] . ( 62 sec) [ -12420.8826] [ 2362] [depth= 1] . ( 63 sec) [ -12332.8089] [ 2349] [depth= 15] . ( 63 sec) [ -12330.6037] [ 2350] [depth= 1] . ( 63 sec) [ -12306.0258] [ 2342] [depth= 2] . ( 63 sec) [ -12303.8419] [ 2338] [depth= 2] . ( 63 sec) [ -12254.4105] [ 2328] [depth= 17] . ( 64 sec) [ -12234.7587] [ 2311] [depth= 11] . ( 64 sec) [ -12218.3379] [ 2310] [depth= 1] . ( 64 sec) [ -12199.8879] [ 2310] [depth= 1] . ( 65 sec) [ -12128.2795] [ 2296] [depth= 4] . ( 65 sec) [ -12122.0700] [ 2295] [depth= 2] . ( 65 sec) [ -11820.6682] [ 2159] [depth= 22] . ( 66 sec) [ -11818.3342] [ 2159] [depth= 1] . ( 66 sec) [ -11815.3236] [ 2158] [depth= 15] . ( 66 sec) [ -11815.2072] [ 2158] [depth= 5] . ( 66 sec) [ -11812.3917] [ 2158] [depth= 5] . ( 67 sec) [ -11811.9491] [ 2158] [depth= 4] . ( 67 sec) [ -11811.4926] [ 2158] [depth= 1] . ( 67 sec) [ -11803.2458] [ 2158] [depth= 1] . ( 67 sec) [ -11785.9628] [ 2157] [depth= 3] . ( 68 sec) [ -11785.9210] [ 2157] [depth= 1] . ( 68 sec) [ -11785.6502] [ 2157] [depth= 3] . ( 68 sec) [ -11785.5728] [ 2157] [depth= 1] . ( 71 sec) [ -11712.3929] [ 2139] [depth= 11] . ( 71 sec) [ -11700.2444] [ 2139] [depth= 1] . ( 71 sec) [ -11699.7356] [ 2139] [depth= 1] . ( 71 sec) [ -11699.6703] [ 2139] [depth= 1] . ( 71 sec) [ -11699.1849] [ 2139] [depth= 2] . ( 72 sec) [ -11698.6481] [ 2139] [depth= 4] . ( 72 sec) [ -11691.4485] [ 2121] [depth= 8] . ( 72 sec) [ -11690.5766] [ 2124] [depth= 1] . ( 72 sec) [ -11686.8098] [ 2123] [depth= 2] . ( 73 sec) [ -11686.2950] [ 2123] [depth= 4] . ( 73 sec) [ -11680.7276] [ 2123] [depth= 2] . ( 73 sec) [ -11651.0863] [ 2120] [depth= 13] . ( 74 sec) [ -11644.3623] [ 2120] [depth= 1] . ( 74 sec) [ -11643.5996] [ 2120] [depth= 4] . ( 74 sec) [ -11643.5323] [ 2120] [depth= 1] . ( 74 sec) [ -11619.4033] [ 2117] [depth= 2] . ( 74 sec) [ -11619.3323] [ 2117] [depth= 1] . ( 75 sec) [ -11614.1981] [ 2114] [depth= 2] . ( 75 sec) [ -11581.7994] [ 2109] [depth= 9] . ( 75 sec) [ -11578.5268] [ 2109] [depth= 4] . ( 75 sec) [ -11577.6947] [ 2111] [depth= 1] . ( 76 sec) [ -11576.3599] [ 2114] [depth= 2] . ( 76 sec) [ -11507.6927] [ 2095] [depth= 7] . ( 76 sec) [ -11473.5114] [ 2070] [depth= 3] . ( 77 sec) [ -11472.5113] [ 2070] [depth= 1] . ( 78 sec) [ -11472.4959] [ 2070] [depth= 5] . ( 78 sec) [ -11362.7246] [ 2026] [depth= 1] . ( 78 sec) [ -11360.6328] [ 2020] [depth= 16] . ( 78 sec) [ -11320.0226] [ 2015] [depth= 5] . ( 80 sec) [ -10817.2842] [Branch lengths ] . ( 88 sec) [ -10634.7412] [GTR parameters ] . ( 89 sec) [ -10541.5169] [Alpha ][ 0.256943] . ( 90 sec) [ -10538.7176] [ 2014] [depth= 1] . ( 90 sec) [ -10530.1275] [ 2015] [depth= 4] . ( 90 sec) [ -10520.5489] [ 2012] [depth= 4] . ( 90 sec) [ -10493.2110] [ 1999] [depth= 1] . ( 91 sec) [ -10487.2954] [ 1999] [depth= 1] . ( 91 sec) [ -10485.4090] [ 1999] [depth= 1] . ( 91 sec) [ -10474.4591] [ 1988] [depth= 3] . ( 92 sec) [ -10474.2062] [ 1988] [depth= 2] . ( 92 sec) [ -10474.1859] [ 1988] [depth= 1] . ( 92 sec) [ -10441.2953] [ 1954] [depth= 4] . ( 92 sec) [ -10430.4276] [ 1951] [depth= 1] . ( 94 sec) [ -10385.8339] [ 1935] [depth= 9] . ( 94 sec) [ -10382.9099] [ 1928] [depth= 13] . ( 96 sec) [ -10378.0614] [ 1926] [depth= 9] . ( 96 sec) [ -10371.9313] [ 1926] [depth= 2] . ( 96 sec) [ -10294.8382] [ 1893] [depth= 2] . ( 97 sec) [ -10291.7134] [ 1883] [depth= 1] . ( 97 sec) [ -10290.5521] [ 1883] [depth= 1] . ( 98 sec) [ -10290.5159] [ 1883] [depth= 4] . ( 98 sec) [ -10290.1213] [ 1883] [depth= 3] . ( 100 sec) [ -10285.9237] [ 1882] [depth= 2] . ( 100 sec) [ -10281.7831] [ 1881] [depth= 3] . ( 101 sec) [ -10261.7204] [ 1856] [depth= 7] . ( 101 sec) [ -10255.2915] [ 1855] [depth= 4] . ( 101 sec) [ -10234.1790] [ 1849] [depth= 1] . ( 101 sec) [ -10208.9720] [ 1846] [depth= 1] . ( 102 sec) [ -10208.9608] [ 1846] [depth= 1] . ( 102 sec) [ -10193.7897] [ 1844] [depth= 3] . ( 102 sec) [ -10193.7639] [ 1844] [depth= 3] . ( 102 sec) [ -10045.3495] [ 1816] [depth= 4] . ( 103 sec) [ -10045.1208] [ 1815] [depth= 5] . ( 103 sec) [ -10043.4962] [ 1815] [depth= 4] . ( 103 sec) [ -10038.3028] [ 1815] [depth= 12] . ( 104 sec) [ -10038.1755] [ 1815] [depth= 2] . ( 105 sec) [ -10028.7368] [ 1803] [depth= 3] . ( 105 sec) [ -10027.8300] [ 1803] [depth= 1] . ( 106 sec) [ -10024.6138] [ 1801] [depth= 1] . ( 107 sec) [ -10022.9719] [ 1798] [depth= 2] . ( 108 sec) [ -10022.9052] [ 1798] [depth= 1] . ( 108 sec) [ -10022.8615] [ 1798] [depth= 1] . ( 108 sec) [ -10022.8128] [ 1798] [depth= 3] . ( 112 sec) [ -10022.7446] [ 1797] [depth= 1] . ( 113 sec) [ -10019.2963] [ 1795] [depth= 1] . ( 114 sec) [ -10018.5364] [ 1796] [depth= 3] . ( 115 sec) [ -10015.6068] [ 1795] [depth= 1] . ( 116 sec) [ -10015.4083] [ 1795] [depth= 2] . ( 116 sec) [ -10015.3681] [ 1795] [depth= 1] . ( 116 sec) [ -10014.6014] [ 1794] [depth= 2] . ( 116 sec) [ -10004.6410] [ 1793] [depth= 10] . ( 117 sec) [ -10004.6068] [ 1793] [depth= 3] . ( 117 sec) [ -10004.5780] [ 1798] [depth= 4] . ( 117 sec) [ -10004.4775] [ 1798] [depth= 1] . ( 117 sec) [ -10001.9451] [ 1802] [depth= 1] . ( 118 sec) [ -10001.7962] [ 1802] [depth= 1] . ( 118 sec) [ -10001.6852] [ 1802] [depth= 1] . ( 119 sec) [ -10001.5201] [ 1802] [depth= 2] . ( 119 sec) [ -10001.5017] [ 1802] [depth= 2] . ( 120 sec) [ -10001.1407] [ 1799] [depth= 3] . ( 120 sec) [ -10000.9617] [ 1799] [depth= 2] . ( 120 sec) [ -10000.1738] [ 1799] [depth= 2] . ( 121 sec) [ -9999.5205] [ 1799] [depth= 13] . ( 121 sec) [ -9995.2013] [ 1798] [depth= 9] . ( 121 sec) [ -9994.8698] [ 1798] [depth= 2] . ( 121 sec) [ -9994.8264] [ 1798] [depth= 1] . ( 121 sec) [ -9994.7372] [ 1798] [depth= 1] . ( 122 sec) [ -9994.4535] [ 1798] [depth= 3] . ( 122 sec) [ -9993.3454] [ 1796] [depth= 9] . ( 122 sec) [ -9992.6186] [ 1796] [depth= 3] . ( 123 sec) [ -9992.5835] [ 1796] [depth= 1] . ( 123 sec) [ -9992.3000] [ 1796] [depth= 4] . ( 123 sec) [ -9992.2401] [ 1796] [depth= 2] . ( 123 sec) [ -9991.4920] [ 1795] [depth= 2] . ( 126 sec) [ -9991.4811] [ 1795] [depth= 1] . ( 128 sec) [ -9983.5902] [ 1789] [depth= 6] . ( 129 sec) [ -9983.5721] [ 1789] [depth= 1] . ( 131 sec) [ -9983.5310] [ 1789] [depth= 2] . ( 131 sec) [ -9982.6034] [ 1788] [depth= 2] . ( 132 sec) [ -9981.7031] [ 1790] [depth= 1] . ( 132 sec) [ -9972.4938] [ 1789] [depth= 7] . ( 134 sec) [ -9972.4197] [ 1789] [depth= 1] . ( 135 sec) [ -9971.6424] [ 1789] [depth= 2] . ( 136 sec) [ -9951.5654] [ 1790] [depth= 2] . ( 136 sec) [ -9951.3622] [ 1790] [depth= 1] . ( 137 sec) [ -9950.6202] [ 1790] [depth= 2] . ( 139 sec) [ -9950.3125] [ 1790] [depth= 1] . ( 139 sec) [ -9950.2874] [ 1789] [depth= 1] . ( 139 sec) [ -9950.2566] [ 1789] [depth= 3] . ( 140 sec) [ -9947.7232] [ 1789] [depth= 4] . ( 140 sec) [ -9947.6414] [ 1789] [depth= 2] . ( 141 sec) [ -9947.5524] [ 1789] [depth= 1] . ( 143 sec) [ -9945.2331] [ 1790] [depth= 1] . ( 144 sec) [ -9943.3920] [ 1790] [depth= 2] . ( 144 sec) [ -9942.1563] [ 1790] [depth= 3] . ( 144 sec) [ -9942.0873] [ 1790] [depth= 2] . ( 146 sec) [ -9942.0718] [ 1790] [depth= 1] . ( 147 sec) [ -9942.0105] [ 1785] [depth= 2] . ( 147 sec) [ -9941.9581] [ 1785] [depth= 1] . ( 148 sec) [ -9941.8016] [ 1785] [depth= 1] . ( 148 sec) [ -9939.3058] [ 1785] [depth= 3] . ( 148 sec) [ -9939.2847] [ 1785] [depth= 3] . ( 149 sec) [ -9939.2207] [ 1785] [depth= 1] . ( 151 sec) [ -9938.9974] [ 1785] [depth= 1] . ( 152 sec) [ -9938.8585] [ 1785] [depth= 1] . ( 153 sec) [ -9938.7489] [ 1785] [depth= 1] . ( 154 sec) [ -9938.6041] [ 1785] [depth= 2] . ( 158 sec) [ -9938.5692] [ 1785] [depth= 2] . ( 158 sec) [ -9938.1853] [ 1788] [depth= 1] . ( 158 sec) [ -9936.5494] [ 1788] [depth= 2] . ( 159 sec) [ -9936.5104] [ 1788] [depth= 1] . ( 159 sec) [ -9936.2280] [ 1786] [depth= 2] . ( 161 sec) [ -9936.1981] [ 1786] [depth= 1] . ( 161 sec) [ -9935.4634] [ 1786] [depth= 1] . ( 161 sec) [ -9920.0955] [ 1781] [depth= 8] . ( 162 sec) [ -9919.8852] [ 1781] [depth= 1] . ( 162 sec) [ -9919.7696] [ 1781] [depth= 1] . ( 163 sec) [ -9919.5767] [ 1781] [depth= 1] . ( 164 sec) [ -9916.7666] [ 1780] [depth= 3] . ( 164 sec) [ -9916.7360] [ 1780] [depth= 4] . ( 164 sec) [ -9910.6322] [ 1781] [depth= 1] . ( 165 sec) [ -9910.6175] [ 1785] [depth= 4] . ( 165 sec) [ -9907.5543] [ 1782] [depth= 1] . ( 165 sec) [ -9902.9320] [ 1781] [depth= 3] . ( 166 sec) [ -9892.4716] [ 1778] [depth= 7] . ( 167 sec) [ -9892.2388] [ 1778] [depth= 1] . ( 170 sec) [ -9886.8080] [ 1779] [depth= 3] . ( 173 sec) [ -9886.3641] [ 1779] [depth= 3] . ( 173 sec) [ -9885.6401] [ 1779] [depth= 1] . ( 173 sec) [ -9885.5646] [ 1779] [depth= 2] . ( 174 sec) [ -9885.4199] [ 1779] [depth= 4] . ( 174 sec) [ -9885.0731] [ 1779] [depth= 3] . ( 176 sec) [ -9884.5363] [ 1779] [depth= 1] . ( 180 sec) [ -9884.4322] [ 1773] [depth= 1] . ( 180 sec) [ -9884.1260] [ 1773] [depth= 3] . ( 180 sec) [ -9884.0572] [ 1773] [depth= 1] . ( 182 sec) [ -9883.6235] [ 1773] [depth= 1] . ( 182 sec) [ -9881.0938] [ 1773] [depth= 4] . ( 183 sec) [ -9879.8385] [ 1773] [depth= 2] . ( 183 sec) [ -9879.8027] [ 1773] [depth= 2] . ( 184 sec) [ -9879.6342] [ 1773] [depth= 1] . ( 185 sec) [ -9879.6145] [ 1773] [depth= 1] . ( 185 sec) [ -9878.8195] [ 1773] [depth= 1] . ( 186 sec) [ -9878.8070] [ 1773] [depth= 1] . ( 187 sec) [ -9878.2136] [ 1773] [depth= 1] . ( 191 sec) [ -9787.6365] [Branch lengths ] . ( 197 sec) [ -9785.9843] [GTR parameters ] . ( 197 sec) [ -9785.1047] [Alpha ][ 0.241820] . ( 203 sec) [ -9784.8897] [ 1772] [depth= 1] . ( 205 sec) [ -9780.7011] [ 1772] [depth= 3] . ( 217 sec) [ -9779.6324] [ 1773] [depth= 1] . ( 218 sec) [ -9779.5460] [ 1773] [depth= 1] . ( 219 sec) [ -9779.5185] [ 1773] [depth= 3] . ( 224 sec) [ -9776.0004] [ 1771] [depth= 4] . ( 227 sec) [ -9775.9706] [ 1771] [depth= 1] . ( 229 sec) [ -9774.6036] [ 1771] [depth= 1] . ( 229 sec) [ -9774.5324] [ 1771] [depth= 2] . ( 230 sec) [ -9774.5129] [ 1771] [depth= 3] . ( 233 sec) [ -9774.4815] [ 1771] [depth= 1] . ( 233 sec) [ -9774.2385] [ 1770] [depth= 1] . ( 234 sec) [ -9774.1982] [ 1770] [depth= 4] . ( 238 sec) [ -9774.1343] [ 1772] [depth= 2] . ( 241 sec) [ -9774.1162] [ 1772] [depth= 3] . ( 241 sec) [ -9772.8001] [ 1772] [depth= 1] . ( 241 sec) [ -9772.1397] [ 1772] [depth= 1] . ( 242 sec) [ -9772.1296] [ 1772] [depth= 3] . ( 242 sec) [ -9771.5121] [ 1772] [depth= 8] . ( 244 sec) [ -9771.4730] [ 1772] [depth= 3] . ( 257 sec) [ -9771.3448] [ 1772] [depth= 2] . ( 259 sec) [ -9771.3034] [ 1772] [depth= 2] . ( 262 sec) [ -9771.2932] [ 1772] [depth= 5] . ( 274 sec) [ -9770.9799] [ 1772] [depth= 1] . ( 275 sec) [ -9770.6918] [ 1772] [depth= 4] . ( 276 sec) [ -9770.2346] [ 1773] [depth= 3] . ( 276 sec) [ -9770.2128] [ 1773] [depth= 2] . ( 279 sec) [ -9770.1916] [ 1774] [depth= 1] . ( 308 sec) [ -9770.1548] [ 1774] [depth= 3] . ( 317 sec) [ -9770.1259] [ 1774] [depth= 2] . ( 317 sec) [ -9770.1120] [ 1774] [depth= 2] . ( 337 sec) [ -9770.0515] [ 1774] [depth= 3] . ( 338 sec) [ -9753.5994] [Branch lengths ] . ( 346 sec) [ -9753.1612] [GTR parameters ] . ( 346 sec) [ -9751.9437] [Alpha ][ 0.225983] . ( 347 sec) [ -9751.9010] [ 1774] [depth= 4] . ( 349 sec) [ -9751.8867] [ 1774] [depth= 2] . ( 352 sec) [ -9751.8711] [ 1774] [depth= 3] . ( 370 sec) [ -9751.8254] [ 1774] [depth= 3] . ( 371 sec) [ -9751.8120] [ 1774] [depth= 1] . ( 376 sec) [ -9751.7492] [ 1774] [depth= 3] . ( 376 sec) [ -9751.7273] [ 1774] [depth= 3] . ( 380 sec) [ -9751.2333] [ 1773] [depth= 1] . ( 382 sec) [ -9751.2131] [ 1773] [depth= 2] . ( 389 sec) [ -9751.1994] [ 1773] [depth= 1] . ( 390 sec) [ -9751.0762] [ 1771] [depth= 3] . ( 391 sec) [ -9751.0551] [ 1771] [depth= 1] . ( 393 sec) [ -9750.7897] [ 1771] [depth= 2] . ( 394 sec) [ -9750.7738] [ 1771] [depth= 4] . ( 395 sec) [ -9750.7282] [ 1771] [depth= 1] . ( 396 sec) [ -9750.7175] [ 1771] [depth= 5] . ( 408 sec) [ -9750.7073] [ 1771] [depth= 1] . ( 420 sec) [ -9750.6921] [ 1771] [depth= 1] . ( 422 sec) [ -9750.6663] [ 1771] [depth= 2] . ( 423 sec) [ -9750.4872] [ 1771] [depth= 2] . ( 428 sec) [ -9750.3092] [ 1772] [depth= 4] . ( 435 sec) [ -9750.2965] [ 1772] [depth= 3] . ( 473 sec) [ -9750.2802] [ 1772] [depth= 6] . ( 485 sec) [ -9750.1244] [ 1771] [depth= 2] . ( 487 sec) [ -9750.0887] [ 1771] [depth= 1] . ( 490 sec) [ -9740.4705] [Branch lengths ] . ( 498 sec) [ -9740.2102] [GTR parameters ] . ( 499 sec) [ -9739.4851] [Alpha ][ 0.214724] . ( 520 sec) [ -9739.4366] [ 1771] [depth= 6] . ( 533 sec) [ -9739.4263] [ 1771] [depth= 1] . ( 534 sec) [ -9739.4030] [ 1771] [depth= 1] . ( 536 sec) [ -9739.1528] [ 1771] [depth= 1] . ( 538 sec) [ -9739.1165] [ 1771] [depth= 1] . ( 540 sec) [ -9738.4007] [ 1771] [depth= 2] . ( 570 sec) [ -9738.3703] [ 1771] [depth= 3] . ( 589 sec) [ -9738.3426] [ 1771] [depth= 1] . ( 593 sec) [ -9738.3048] [ 1771] [depth= 6] . ( 616 sec) [ -9738.2928] [ 1771] [depth= 1] . ( 640 sec) [ -9738.2811] [ 1771] [depth= 3] . ( 651 sec) [ -9738.2496] [ 1771] [depth= 1] . ( 651 sec) [ -9738.2284] [ 1771] [depth= 6] . ( 654 sec) [ -9730.8606] [Branch lengths ] . ( 661 sec) [ -9730.6844] [GTR parameters ] . ( 662 sec) [ -9730.3393] [Alpha ][ 0.207428] . ( 662 sec) [ -9730.2451] [ 1771] [depth= 1] . ( 664 sec) [ -9730.2170] [ 1771] [depth= 2] . ( 689 sec) [ -9730.1983] [ 1771] [depth= 3] . ( 694 sec) [ -9730.1801] [ 1771] [depth= 1] . ( 697 sec) [ -9730.1659] [ 1771] [depth= 1] . ( 703 sec) [ -9730.0604] [ 1771] [depth= 2] . ( 706 sec) [ -9730.0488] [ 1771] [depth= 3] . ( 712 sec) [ -9730.0359] [ 1771] [depth= 4] . ( 748 sec) [ -9730.0223] [ 1771] [depth= 1] . ( 816 sec) [ -9726.4789] [Branch lengths ] . ( 818 sec) [ -9726.4070] [GTR parameters ] . ( 818 sec) [ -9726.0074] [Alpha ][ 0.199877] . ( 845 sec) [ -9725.9024] [ 1770] [depth= 2] . ( 852 sec) [ -9725.8884] [ 1770] [depth= 3] . ( 938 sec) [ -9725.8769] [ 1770] [depth= 1] . ( 942 sec) [ -9725.6199] [ 1770] [depth= 1] . ( 948 sec) [ -9725.5980] [ 1770] [depth= 3] . ( 983 sec) [ -9722.1661] [Branch lengths ] . ( 989 sec) [ -9722.0507] [GTR parameters ] . ( 990 sec) [ -9721.8584] [Alpha ][ 0.194897] . ( 1015 sec) [ -9721.8460] [ 1771] [depth= 5] . ( 1031 sec) [ -9721.1493] [ 1767] [depth= 1] . ( 1137 sec) [ -9720.6398] [ 1768] [depth= 1] . ( 1142 sec) [ -9714.7920] [Branch lengths ] . ( 1146 sec) [ -9714.6258] [GTR parameters ] . ( 1147 sec) [ -9714.2827] [Alpha ][ 0.188503] . ( 1303 sec) [ -9713.2918] [Branch lengths ] . ( 1460 sec) [ -9713.1342] [ 1767] [depth= 2] . ( 1478 sec) [ -9713.0988] [ 1768] [depth= 1] . ( 1480 sec) [ -9713.0822] [ 1768] [depth= 4] . ( 1488 sec) [ -9712.4823] [Branch lengths ] . ( 1496 sec) [ -9712.4105] [GTR parameters ] . ( 1497 sec) [ -9712.0954] [Alpha ][ 0.182511] . ( 1681 sec) [ -9710.7582] [Branch lengths ] . ( 1681 sec) [ -9710.7582] [Topology ] . ( 1684 sec) [ -9710.5312] [Topology ] . ( 1688 sec) [ -9710.4787] [Topology ] . ( 1691 sec) [ -9710.4626] [Topology ] . ( 1694 sec) [ -9710.4576] [Topology ] . ( 1697 sec) [ -9710.4561] [Topology ] . ( 1700 sec) [ -9710.4559] [Topology ] . ( 1703 sec) [ -9710.4381] [GTR parameters ] . ( 1703 sec) [ -9710.3359] [Alpha ][ 0.179183] . ( 1704 sec) [ -9710.3359] [Topology ] . ( 1707 sec) [ -9710.2991] [Topology ] . ( 1710 sec) [ -9710.2853] [Topology ] . ( 1713 sec) [ -9710.2798] [Topology ] . ( 1716 sec) [ -9710.2781] [Topology ] . ( 1720 sec) [ -9710.2789] [Topology ] . ( 1721 sec) [ -9710.2787] [GTR parameters ] . ( 1721 sec) [ -9710.2599] [Alpha ][ 0.177777] . ( 1721 sec) [ -9710.2599] [Topology ] . ( 1724 sec) [ -9710.2540] [Topology ] . ( 1728 sec) [ -9710.2560] [Topology ] . Moving backward . ( 1728 sec) [ -9710.2394] [Topology ] . ( 1731 sec) [ -9710.2368] [Topology ] . ( 1734 sec) [ -9710.2356] [Topology ] . ( 1737 sec) [ -9710.2351] [Topology ] . ( 1738 sec) [ -9710.2349] [GTR parameters ] . ( 1739 sec) [ -9710.2286] [Alpha ][ 0.176997] . ( 1739 sec) [ -9710.2286] [Topology ] . ( 1742 sec) [ -9710.2256] [Topology ] . ( 1745 sec) [ -9710.2244] [Topology ] . ( 1749 sec) [ -9710.2239] [Topology ] . ( 1750 sec) [ -9710.2236] [GTR parameters ] . ( 1750 sec) [ -9710.2224] [Alpha ][ 0.176689] . ( 1750 sec) [ -9710.2224] [Topology ] . ( 1753 sec) [ -9710.2215] [Topology ] . ( 1757 sec) [ -9710.2098] [GTR parameters ] . ( 1757 sec) [ -9710.2092] [Alpha ][ 0.176494] . ( 1758 sec) [ -9710.2092] [Topology ] . ( 1761 sec) [ -9710.2074] [Topology ] . ( 1764 sec) [ -9710.2071] [Topology ] . ( 1766 sec) [ -9710.2068] [GTR parameters ] . ( 1766 sec) [ -9710.2059] [Alpha ][ 0.176248] . ( 1766 sec) [ -9710.2059] [Topology ] . ( 1769 sec) [ -9710.2059] [Topology ] . ( 1772 sec) [ -9710.2051] [GTR parameters ] . ( 1772 sec) [ -9710.2051] [Alpha ][ 0.176248] . Checking for NNIs, optimizing five branches... . ( 1797 sec) [ -9710.2045] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -9710.204538. . [Random start 2/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 4 sec) [ -40686.1128] [GTR parameters ] . ( 5 sec) [ -39673.9020] [Alpha ][ 0.500960] . ( 5 sec) [ -38609.3015] [ 5124] [depth= 19] . ( 5 sec) [ -37910.8478] [ 5028] [depth= 14] . ( 6 sec) [ -37513.0685] [ 5022] [depth= 2] . ( 6 sec) [ -37477.4513] [ 5021] [depth= 1] . ( 6 sec) [ -35780.0381] [ 4747] [depth= 9] . ( 6 sec) [ -35711.9728] [ 4745] [depth= 2] . ( 6 sec) [ -35692.5243] [ 4745] [depth= 3] . ( 6 sec) [ -35641.5527] [ 4734] [depth= 7] . ( 7 sec) [ -35608.5065] [ 4734] [depth= 1] . ( 7 sec) [ -35538.7477] [ 4725] [depth= 3] . ( 7 sec) [ -35473.6485] [ 4721] [depth= 9] . ( 7 sec) [ -35448.7143] [ 4720] [depth= 4] . ( 7 sec) [ -35335.6545] [ 4720] [depth= 2] . ( 8 sec) [ -35308.7701] [ 4716] [depth= 3] . ( 8 sec) [ -34855.8256] [ 4715] [depth= 7] . ( 8 sec) [ -34047.6006] [ 4705] [depth= 3] . ( 8 sec) [ -34006.5217] [ 4704] [depth= 6] . ( 8 sec) [ -33997.4690] [ 4707] [depth= 1] . ( 9 sec) [ -33951.9475] [ 4629] [depth= 7] . ( 9 sec) [ -33892.9326] [ 4618] [depth= 2] . ( 9 sec) [ -33300.6507] [ 4618] [depth= 2] . ( 9 sec) [ -33247.6581] [ 4612] [depth= 3] . ( 9 sec) [ -33167.8896] [ 4607] [depth= 10] . ( 10 sec) [ -32767.9707] [ 4602] [depth= 8] . ( 10 sec) [ -31562.2979] [ 4602] [depth= 1] . ( 10 sec) [ -31115.2096] [ 4463] [depth= 9] . ( 10 sec) [ -30403.6679] [ 4315] [depth= 25] . ( 10 sec) [ -30119.0349] [ 4312] [depth= 6] . ( 11 sec) [ -30089.7020] [ 4312] [depth= 1] . ( 11 sec) [ -30044.7391] [ 4300] [depth= 7] . ( 11 sec) [ -30000.0582] [ 4300] [depth= 2] . ( 11 sec) [ -29780.1850] [ 4286] [depth= 11] . ( 11 sec) [ -29779.4486] [ 4290] [depth= 1] . ( 12 sec) [ -29728.3775] [ 4285] [depth= 12] . ( 12 sec) [ -29705.7785] [ 4285] [depth= 10] . ( 12 sec) [ -29593.8089] [ 4279] [depth= 16] . ( 12 sec) [ -29547.5705] [ 4272] [depth= 14] . ( 12 sec) [ -29401.1047] [ 4242] [depth= 19] . ( 13 sec) [ -29370.8921] [ 4228] [depth= 14] . ( 13 sec) [ -29022.7691] [ 4228] [depth= 1] . ( 13 sec) [ -28793.0372] [ 4185] [depth= 25] . ( 14 sec) [ -28679.8428] [ 4175] [depth= 20] . ( 14 sec) [ -28300.6567] [ 4078] [depth= 38] . ( 14 sec) [ -27893.1751] [ 4036] [depth= 20] . ( 14 sec) [ -27890.6343] [ 4036] [depth= 1] . ( 15 sec) [ -27831.1008] [ 4029] [depth= 8] . ( 15 sec) [ -25833.5674] [ 3896] [depth= 32] . ( 15 sec) [ -25657.4323] [ 3896] [depth= 1] . ( 15 sec) [ -25640.5175] [ 3893] [depth= 2] . ( 16 sec) [ -25303.1723] [ 3892] [depth= 25] . ( 16 sec) [ -25276.4547] [ 3892] [depth= 2] . ( 17 sec) [ -24522.3849] [ 3747] [depth= 23] . ( 17 sec) [ -24441.8480] [ 3741] [depth= 20] . ( 17 sec) [ -24311.9880] [ 3705] [depth= 31] . ( 17 sec) [ -24098.9400] [ 3673] [depth= 22] . ( 18 sec) [ -24023.3953] [ 3672] [depth= 3] . ( 18 sec) [ -23808.4001] [ 3530] [depth= 23] . ( 18 sec) [ -23711.0552] [ 3534] [depth= 9] . ( 18 sec) [ -23540.1652] [ 3503] [depth= 7] . ( 19 sec) [ -23446.1749] [ 3489] [depth= 11] . ( 19 sec) [ -23356.9216] [ 3479] [depth= 18] . ( 19 sec) [ -23349.0806] [ 3479] [depth= 6] . ( 19 sec) [ -23347.3639] [ 3478] [depth= 7] . ( 20 sec) [ -23317.7921] [ 3477] [depth= 2] . ( 20 sec) [ -22915.6360] [ 3471] [depth= 4] . ( 20 sec) [ -22842.9975] [ 3469] [depth= 7] . ( 20 sec) [ -22812.7398] [ 3465] [depth= 25] . ( 20 sec) [ -22742.4305] [ 3465] [depth= 1] . ( 21 sec) [ -22694.8140] [ 3454] [depth= 23] . ( 21 sec) [ -22694.5041] [ 3455] [depth= 1] . ( 21 sec) [ -22691.4764] [ 3454] [depth= 1] . ( 21 sec) [ -22642.2946] [ 3447] [depth= 4] . ( 22 sec) [ -22590.6412] [ 3445] [depth= 25] . ( 22 sec) [ -22543.3435] [ 3472] [depth= 1] . ( 22 sec) [ -22070.1942] [ 3433] [depth= 22] . ( 22 sec) [ -21965.0678] [ 3385] [depth= 25] . ( 23 sec) [ -21932.0314] [ 3383] [depth= 6] . ( 23 sec) [ -21907.9286] [ 3377] [depth= 11] . ( 23 sec) [ -21680.9180] [ 3384] [depth= 1] . ( 23 sec) [ -21660.1700] [ 3384] [depth= 2] . ( 24 sec) [ -21568.3534] [ 3371] [depth= 10] . ( 24 sec) [ -21495.3699] [ 3354] [depth= 14] . ( 24 sec) [ -21454.9182] [ 3352] [depth= 12] . ( 24 sec) [ -21414.6084] [ 3352] [depth= 1] . ( 25 sec) [ -21399.9272] [ 3352] [depth= 1] . ( 25 sec) [ -21387.9123] [ 3354] [depth= 1] . ( 25 sec) [ -21382.6494] [ 3353] [depth= 1] . ( 25 sec) [ -21326.4442] [ 3346] [depth= 6] . ( 25 sec) [ -21318.8658] [ 3341] [depth= 2] . ( 26 sec) [ -21301.8641] [ 3341] [depth= 1] . ( 26 sec) [ -21276.5734] [ 3338] [depth= 1] . ( 26 sec) [ -21225.8060] [ 3332] [depth= 6] . ( 26 sec) [ -21147.3690] [ 3328] [depth= 4] . ( 27 sec) [ -21118.9486] [ 3326] [depth= 7] . ( 27 sec) [ -20901.0275] [ 3316] [depth= 13] . ( 27 sec) [ -20853.0263] [ 3287] [depth= 9] . ( 27 sec) [ -20837.5691] [ 3286] [depth= 2] . ( 27 sec) [ -20742.9630] [ 3247] [depth= 5] . ( 28 sec) [ -20709.5304] [ 3242] [depth= 17] . ( 28 sec) [ -20686.2515] [ 3242] [depth= 1] . ( 28 sec) [ -20633.8387] [ 3233] [depth= 21] . ( 28 sec) [ -20513.6697] [ 3230] [depth= 2] . ( 29 sec) [ -19615.8172] [ 3255] [depth= 1] . ( 29 sec) [ -19422.0376] [ 3230] [depth= 2] . ( 29 sec) [ -19421.1542] [ 3230] [depth= 24] . ( 29 sec) [ -19386.2908] [ 3221] [depth= 7] . ( 29 sec) [ -19332.8717] [ 3210] [depth= 18] . ( 30 sec) [ -19312.0495] [ 3205] [depth= 25] . ( 30 sec) [ -19258.1477] [ 3209] [depth= 1] . ( 31 sec) [ -18926.0746] [ 3064] [depth= 3] . ( 31 sec) [ -18924.4401] [ 3062] [depth= 1] . ( 31 sec) [ -18737.6035] [ 3005] [depth= 24] . ( 31 sec) [ -18733.0766] [ 3002] [depth= 1] . ( 32 sec) [ -18717.3218] [ 3001] [depth= 21] . ( 32 sec) [ -18710.6345] [ 3000] [depth= 1] . ( 32 sec) [ -18707.4326] [ 3000] [depth= 14] . ( 32 sec) [ -18704.6543] [ 3000] [depth= 2] . ( 33 sec) [ -18694.2923] [ 3002] [depth= 2] . ( 33 sec) [ -18673.9083] [ 3002] [depth= 1] . ( 33 sec) [ -18575.8443] [ 3002] [depth= 1] . ( 33 sec) [ -18574.9836] [ 3002] [depth= 14] . ( 34 sec) [ -18341.8678] [ 2996] [depth= 19] . ( 34 sec) [ -18299.9557] [ 2982] [depth= 8] . ( 34 sec) [ -18291.5475] [ 2982] [depth= 2] . ( 35 sec) [ -18283.8047] [ 2982] [depth= 2] . ( 35 sec) [ -18267.8508] [ 2980] [depth= 15] . ( 35 sec) [ -18241.1668] [ 2971] [depth= 3] . ( 36 sec) [ -18234.5946] [ 2969] [depth= 1] . ( 36 sec) [ -18174.4618] [ 2963] [depth= 7] . ( 36 sec) [ -18170.1179] [ 2963] [depth= 5] . ( 36 sec) [ -18166.0005] [ 2963] [depth= 2] . ( 36 sec) [ -18158.6381] [ 2962] [depth= 12] . ( 37 sec) [ -18142.6917] [ 2961] [depth= 5] . ( 37 sec) [ -18102.3100] [ 2952] [depth= 15] . ( 38 sec) [ -18101.3557] [ 2952] [depth= 2] . ( 38 sec) [ -18069.6223] [ 2944] [depth= 10] . ( 38 sec) [ -18051.1578] [ 2949] [depth= 11] . ( 39 sec) [ -18045.6329] [ 2949] [depth= 11] . ( 39 sec) [ -17946.1032] [ 2943] [depth= 20] . ( 39 sec) [ -17945.2548] [ 2933] [depth= 13] . ( 39 sec) [ -17918.4765] [ 2925] [depth= 12] . ( 39 sec) [ -17917.3023] [ 2925] [depth= 1] . ( 40 sec) [ -17915.2139] [ 2925] [depth= 1] . ( 41 sec) [ -17882.5304] [ 2919] [depth= 23] . ( 41 sec) [ -17788.4795] [ 2897] [depth= 9] . ( 41 sec) [ -17714.0384] [ 2888] [depth= 16] . ( 41 sec) [ -17666.5433] [ 2889] [depth= 5] . ( 41 sec) [ -17391.1444] [ 2845] [depth= 16] . ( 42 sec) [ -16538.0257] [ 2854] [depth= 25] . ( 42 sec) [ -15371.3421] [ 2794] [depth= 24] . ( 42 sec) [ -15334.1553] [ 2786] [depth= 1] . ( 43 sec) [ -15309.6584] [ 2794] [depth= 1] . ( 43 sec) [ -15109.4669] [ 2737] [depth= 14] . ( 43 sec) [ -15056.3546] [ 2724] [depth= 12] . ( 44 sec) [ -15004.5263] [ 2722] [depth= 13] . ( 44 sec) [ -14954.5779] [ 2719] [depth= 15] . ( 44 sec) [ -14932.9627] [ 2716] [depth= 19] . ( 44 sec) [ -14912.0672] [ 2713] [depth= 8] . ( 45 sec) [ -14908.7236] [ 2717] [depth= 1] . ( 45 sec) [ -14895.1683] [ 2714] [depth= 8] . ( 45 sec) [ -14880.0138] [ 2709] [depth= 3] . ( 45 sec) [ -14853.5748] [ 2709] [depth= 3] . ( 46 sec) [ -14850.5698] [ 2709] [depth= 4] . ( 46 sec) [ -14847.3433] [ 2704] [depth= 15] . ( 46 sec) [ -14778.6006] [ 2680] [depth= 9] . ( 46 sec) [ -14757.4540] [ 2680] [depth= 1] . ( 46 sec) [ -14731.5355] [ 2680] [depth= 20] . ( 47 sec) [ -14716.9230] [ 2678] [depth= 1] . ( 47 sec) [ -14697.6192] [ 2674] [depth= 1] . ( 48 sec) [ -14696.0123] [ 2674] [depth= 7] . ( 48 sec) [ -14666.3315] [ 2659] [depth= 8] . ( 48 sec) [ -14613.4150] [ 2648] [depth= 11] . ( 48 sec) [ -14605.1539] [ 2648] [depth= 6] . ( 49 sec) [ -14567.8468] [ 2645] [depth= 1] . ( 49 sec) [ -14565.5630] [ 2645] [depth= 3] . ( 49 sec) [ -14564.7680] [ 2645] [depth= 3] . ( 50 sec) [ -14562.0321] [ 2645] [depth= 1] . ( 50 sec) [ -14553.2779] [ 2648] [depth= 6] . ( 50 sec) [ -14341.2214] [ 2624] [depth= 20] . ( 50 sec) [ -14339.9374] [ 2624] [depth= 3] . ( 51 sec) [ -14321.9500] [ 2629] [depth= 11] . ( 52 sec) [ -14320.7267] [ 2630] [depth= 1] . ( 52 sec) [ -14299.0839] [ 2629] [depth= 22] . ( 52 sec) [ -14290.0856] [ 2630] [depth= 1] . ( 52 sec) [ -14243.7443] [ 2625] [depth= 13] . ( 53 sec) [ -14230.4404] [ 2624] [depth= 1] . ( 53 sec) [ -14078.1265] [ 2589] [depth= 5] . ( 53 sec) [ -13947.7934] [ 2580] [depth= 10] . ( 53 sec) [ -13944.8299] [ 2580] [depth= 2] . ( 53 sec) [ -13944.4135] [ 2580] [depth= 3] . ( 54 sec) [ -13932.5926] [ 2557] [depth= 5] . ( 54 sec) [ -13914.2897] [ 2557] [depth= 1] . ( 54 sec) [ -13900.3915] [ 2557] [depth= 1] . ( 54 sec) [ -13897.0803] [ 2557] [depth= 1] . ( 55 sec) [ -13892.3000] [ 2557] [depth= 3] . ( 55 sec) [ -13833.7055] [ 2556] [depth= 2] . ( 55 sec) [ -13807.9035] [ 2549] [depth= 5] . ( 55 sec) [ -13750.6744] [ 2526] [depth= 4] . ( 55 sec) [ -13676.6239] [ 2526] [depth= 1] . ( 56 sec) [ -13667.3472] [ 2526] [depth= 15] . ( 56 sec) [ -13666.4178] [ 2526] [depth= 3] . ( 56 sec) [ -13658.7314] [ 2525] [depth= 2] . ( 57 sec) [ -13658.3651] [ 2525] [depth= 2] . ( 57 sec) [ -13655.8865] [ 2516] [depth= 6] . ( 57 sec) [ -13648.9619] [ 2516] [depth= 4] . ( 57 sec) [ -13642.4901] [ 2516] [depth= 1] . ( 57 sec) [ -13606.2961] [ 2515] [depth= 11] . ( 58 sec) [ -13605.7348] [ 2515] [depth= 1] . ( 58 sec) [ -13594.7049] [ 2515] [depth= 3] . ( 59 sec) [ -13583.7612] [ 2515] [depth= 13] . ( 59 sec) [ -13582.2441] [ 2516] [depth= 17] . ( 60 sec) [ -13577.7757] [ 2516] [depth= 1] . ( 60 sec) [ -13550.9256] [ 2515] [depth= 3] . ( 60 sec) [ -13545.0283] [ 2514] [depth= 1] . ( 60 sec) [ -13540.6024] [ 2514] [depth= 3] . ( 61 sec) [ -13533.4577] [ 2514] [depth= 1] . ( 61 sec) [ -13523.1026] [ 2515] [depth= 1] . ( 61 sec) [ -13523.0366] [ 2515] [depth= 3] . ( 61 sec) [ -13491.2356] [ 2509] [depth= 13] . ( 62 sec) [ -13448.5290] [ 2499] [depth= 6] . ( 62 sec) [ -13447.9519] [ 2499] [depth= 2] . ( 62 sec) [ -13444.5454] [ 2499] [depth= 5] . ( 62 sec) [ -13427.6579] [ 2498] [depth= 12] . ( 63 sec) [ -12928.6696] [ 2497] [depth= 7] . ( 63 sec) [ -12893.1413] [ 2497] [depth= 2] . ( 63 sec) [ -12886.0726] [ 2495] [depth= 7] . ( 63 sec) [ -12885.9673] [ 2495] [depth= 1] . ( 64 sec) [ -12878.7311] [ 2492] [depth= 1] . ( 64 sec) [ -12843.7909] [ 2482] [depth= 5] . ( 64 sec) [ -12843.0392] [ 2482] [depth= 4] . ( 64 sec) [ -12809.7452] [ 2479] [depth= 3] . ( 64 sec) [ -12788.0370] [ 2479] [depth= 1] . ( 65 sec) [ -12777.7828] [ 2478] [depth= 3] . ( 65 sec) [ -12526.0715] [ 2375] [depth= 9] . ( 65 sec) [ -12524.2772] [ 2374] [depth= 2] . ( 65 sec) [ -12524.0295] [ 2374] [depth= 4] . ( 66 sec) [ -12521.6475] [ 2370] [depth= 7] . ( 66 sec) [ -12501.8694] [ 2365] [depth= 3] . ( 66 sec) [ -12468.4626] [ 2362] [depth= 1] . ( 66 sec) [ -12461.5847] [ 2366] [depth= 1] . ( 67 sec) [ -12448.9253] [ 2370] [depth= 1] . ( 67 sec) [ -12443.7978] [ 2368] [depth= 1] . ( 67 sec) [ -12422.0876] [ 2369] [depth= 1] . ( 68 sec) [ -12402.6412] [ 2368] [depth= 11] . ( 68 sec) [ -12329.2840] [ 2358] [depth= 4] . ( 68 sec) [ -12319.2993] [ 2358] [depth= 2] . ( 68 sec) [ -12311.0557] [ 2358] [depth= 12] . ( 68 sec) [ -12298.0359] [ 2357] [depth= 1] . ( 69 sec) [ -12297.7108] [ 2357] [depth= 4] . ( 69 sec) [ -12277.4453] [ 2352] [depth= 15] . ( 69 sec) [ -12276.3243] [ 2352] [depth= 3] . ( 70 sec) [ -12261.0409] [ 2351] [depth= 3] . ( 70 sec) [ -12252.3332] [ 2356] [depth= 1] . ( 70 sec) [ -12250.4071] [ 2351] [depth= 1] . ( 70 sec) [ -12209.1584] [ 2342] [depth= 19] . ( 71 sec) [ -12192.3776] [ 2335] [depth= 11] . ( 71 sec) [ -12178.5546] [ 2334] [depth= 5] . ( 71 sec) [ -12178.2910] [ 2334] [depth= 3] . ( 71 sec) [ -12151.8437] [ 2322] [depth= 9] . ( 72 sec) [ -12151.4482] [ 2323] [depth= 1] . ( 72 sec) [ -12151.2297] [ 2323] [depth= 1] . ( 72 sec) [ -12150.6352] [ 2323] [depth= 3] . ( 73 sec) [ -12150.5671] [ 2323] [depth= 5] . ( 73 sec) [ -12145.2468] [ 2323] [depth= 3] . ( 73 sec) [ -11819.9756] [ 2256] [depth= 6] . ( 73 sec) [ -11813.6923] [ 2249] [depth= 1] . ( 73 sec) [ -11810.4486] [ 2246] [depth= 1] . ( 74 sec) [ -11809.3688] [ 2240] [depth= 1] . ( 74 sec) [ -11800.2780] [ 2240] [depth= 1] . ( 74 sec) [ -11798.2149] [ 2239] [depth= 1] . ( 75 sec) [ -11737.9743] [ 2230] [depth= 3] . ( 75 sec) [ -11730.2186] [ 2230] [depth= 2] . ( 75 sec) [ -11722.7951] [ 2230] [depth= 6] . ( 76 sec) [ -11677.2303] [ 2218] [depth= 10] . ( 76 sec) [ -11676.1709] [ 2218] [depth= 2] . ( 76 sec) [ -11428.2925] [ 2079] [depth= 12] . ( 76 sec) [ -11367.6334] [ 2078] [depth= 2] . ( 76 sec) [ -11354.2483] [ 2078] [depth= 2] . ( 77 sec) [ -11353.1886] [ 2078] [depth= 2] . ( 77 sec) [ -11351.3505] [ 2076] [depth= 1] . ( 77 sec) [ -11344.7272] [ 2075] [depth= 1] . ( 77 sec) [ -11327.5443] [ 2076] [depth= 3] . ( 78 sec) [ -11327.4391] [ 2076] [depth= 6] . ( 78 sec) [ -11299.7519] [ 2051] [depth= 12] . ( 79 sec) [ -11193.0903] [ 2040] [depth= 2] . ( 79 sec) [ -11193.0659] [ 2040] [depth= 3] . ( 79 sec) [ -11192.6120] [ 2040] [depth= 2] . ( 80 sec) [ -11185.8977] [ 2040] [depth= 1] . ( 80 sec) [ -10899.1273] [ 1941] [depth= 6] . ( 80 sec) [ -10884.3601] [ 1941] [depth= 2] . ( 80 sec) [ -10877.2148] [ 1941] [depth= 1] . ( 82 sec) [ -10433.6857] [Branch lengths ] . ( 96 sec) [ -10388.3982] [GTR parameters ] . ( 96 sec) [ -10283.6475] [Alpha ][ 0.251160] . ( 97 sec) [ -10281.3757] [ 1940] [depth= 1] . ( 97 sec) [ -10280.9584] [ 1940] [depth= 1] . ( 97 sec) [ -10280.3691] [ 1940] [depth= 1] . ( 98 sec) [ -10255.4853] [ 1933] [depth= 6] . ( 99 sec) [ -10254.3676] [ 1933] [depth= 2] . ( 100 sec) [ -10253.6831] [ 1933] [depth= 2] . ( 100 sec) [ -10229.0181] [ 1918] [depth= 2] . ( 100 sec) [ -10225.9181] [ 1917] [depth= 4] . ( 100 sec) [ -10225.6975] [ 1917] [depth= 2] . ( 101 sec) [ -10224.2122] [ 1915] [depth= 1] . ( 101 sec) [ -10223.7447] [ 1915] [depth= 1] . ( 103 sec) [ -10216.5112] [ 1906] [depth= 3] . ( 105 sec) [ -10215.8649] [ 1905] [depth= 2] . ( 105 sec) [ -10215.1260] [ 1905] [depth= 1] . ( 105 sec) [ -10214.8132] [ 1905] [depth= 1] . ( 106 sec) [ -10214.2752] [ 1906] [depth= 1] . ( 106 sec) [ -10214.1747] [ 1906] [depth= 1] . ( 106 sec) [ -10214.1460] [ 1906] [depth= 1] . ( 107 sec) [ -10214.1139] [ 1906] [depth= 4] . ( 107 sec) [ -10212.5463] [ 1904] [depth= 2] . ( 107 sec) [ -10209.5623] [ 1906] [depth= 10] . ( 107 sec) [ -10209.2602] [ 1907] [depth= 1] . ( 108 sec) [ -10198.9248] [ 1907] [depth= 1] . ( 109 sec) [ -10195.4001] [ 1907] [depth= 1] . ( 109 sec) [ -10195.3687] [ 1908] [depth= 3] . ( 112 sec) [ -10187.0257] [ 1907] [depth= 1] . ( 113 sec) [ -10186.7621] [ 1908] [depth= 1] . ( 113 sec) [ -10186.7326] [ 1909] [depth= 2] . ( 114 sec) [ -10185.2601] [ 1910] [depth= 1] . ( 114 sec) [ -10184.7795] [ 1911] [depth= 2] . ( 115 sec) [ -10182.0858] [ 1910] [depth= 1] . ( 116 sec) [ -10181.8713] [ 1910] [depth= 3] . ( 116 sec) [ -10181.8256] [ 1910] [depth= 2] . ( 116 sec) [ -10178.6934] [ 1911] [depth= 1] . ( 117 sec) [ -10175.3939] [ 1911] [depth= 3] . ( 117 sec) [ -10175.3233] [ 1911] [depth= 2] . ( 118 sec) [ -10174.8587] [ 1911] [depth= 3] . ( 121 sec) [ -10174.8451] [ 1911] [depth= 1] . ( 122 sec) [ -10169.5009] [ 1891] [depth= 1] . ( 122 sec) [ -10148.5609] [ 1885] [depth= 6] . ( 122 sec) [ -10147.5556] [ 1887] [depth= 10] . ( 122 sec) [ -10142.9823] [ 1885] [depth= 1] . ( 123 sec) [ -10142.6167] [ 1882] [depth= 1] . ( 124 sec) [ -10142.5893] [ 1882] [depth= 1] . ( 124 sec) [ -10142.5158] [ 1882] [depth= 2] . ( 124 sec) [ -10142.3431] [ 1882] [depth= 1] . ( 124 sec) [ -10138.8793] [ 1881] [depth= 1] . ( 126 sec) [ -10136.4581] [ 1881] [depth= 1] . ( 129 sec) [ -10135.7696] [ 1881] [depth= 1] . ( 129 sec) [ -10131.6404] [ 1883] [depth= 1] . ( 132 sec) [ -10131.4165] [ 1883] [depth= 2] . ( 135 sec) [ -10017.2825] [ 1822] [depth= 1] . ( 135 sec) [ -10005.1130] [ 1819] [depth= 10] . ( 140 sec) [ -10005.0959] [ 1819] [depth= 1] . ( 142 sec) [ -10004.3774] [ 1819] [depth= 8] . ( 142 sec) [ -10004.3552] [ 1819] [depth= 1] . ( 142 sec) [ -10004.2105] [ 1819] [depth= 1] . ( 143 sec) [ -10004.1950] [ 1819] [depth= 3] . ( 145 sec) [ -10004.1462] [ 1819] [depth= 2] . ( 148 sec) [ -10003.5301] [ 1819] [depth= 2] . ( 148 sec) [ -10003.2647] [ 1819] [depth= 1] . ( 149 sec) [ -10002.2267] [ 1819] [depth= 1] . ( 149 sec) [ -9967.1035] [ 1807] [depth= 15] . ( 149 sec) [ -9967.0527] [ 1807] [depth= 1] . ( 150 sec) [ -9966.4685] [ 1807] [depth= 2] . ( 151 sec) [ -9966.4466] [ 1807] [depth= 2] . ( 151 sec) [ -9966.4086] [ 1807] [depth= 4] . ( 151 sec) [ -9964.7793] [ 1807] [depth= 2] . ( 152 sec) [ -9964.6611] [ 1807] [depth= 1] . ( 153 sec) [ -9964.4787] [ 1806] [depth= 1] . ( 154 sec) [ -9951.1335] [ 1811] [depth= 3] . ( 154 sec) [ -9950.5557] [ 1813] [depth= 2] . ( 154 sec) [ -9950.4195] [ 1813] [depth= 1] . ( 155 sec) [ -9946.6040] [ 1813] [depth= 1] . ( 156 sec) [ -9945.6801] [ 1813] [depth= 2] . ( 159 sec) [ -9941.8949] [ 1813] [depth= 1] . ( 161 sec) [ -9935.1801] [ 1807] [depth= 6] . ( 161 sec) [ -9929.4551] [ 1806] [depth= 3] . ( 161 sec) [ -9929.3937] [ 1806] [depth= 1] . ( 162 sec) [ -9929.3836] [ 1806] [depth= 1] . ( 162 sec) [ -9929.3622] [ 1806] [depth= 1] . ( 163 sec) [ -9929.2320] [ 1803] [depth= 4] . ( 163 sec) [ -9929.2044] [ 1803] [depth= 3] . ( 164 sec) [ -9929.1516] [ 1802] [depth= 1] . ( 164 sec) [ -9928.7820] [ 1803] [depth= 1] . ( 165 sec) [ -9928.7641] [ 1803] [depth= 2] . ( 166 sec) [ -9928.0993] [ 1803] [depth= 2] . ( 167 sec) [ -9928.0702] [ 1803] [depth= 2] . ( 167 sec) [ -9928.0582] [ 1803] [depth= 1] . ( 168 sec) [ -9927.9101] [ 1803] [depth= 2] . ( 173 sec) [ -9927.3317] [ 1803] [depth= 1] . ( 173 sec) [ -9927.0094] [ 1801] [depth= 1] . ( 173 sec) [ -9926.4165] [ 1801] [depth= 3] . ( 173 sec) [ -9925.2732] [ 1802] [depth= 2] . ( 174 sec) [ -9925.2620] [ 1802] [depth= 2] . ( 174 sec) [ -9923.6538] [ 1802] [depth= 3] . ( 175 sec) [ -9911.1990] [ 1798] [depth= 3] . ( 178 sec) [ -9907.4346] [ 1797] [depth= 4] . ( 181 sec) [ -9907.4093] [ 1797] [depth= 3] . ( 182 sec) [ -9880.8808] [ 1790] [depth= 4] . ( 185 sec) [ -9879.0524] [ 1790] [depth= 1] . ( 186 sec) [ -9872.0517] [ 1787] [depth= 4] . ( 186 sec) [ -9870.5751] [ 1792] [depth= 1] . ( 186 sec) [ -9870.5092] [ 1792] [depth= 2] . ( 187 sec) [ -9870.3008] [ 1793] [depth= 2] . ( 187 sec) [ -9870.2903] [ 1793] [depth= 3] . ( 188 sec) [ -9866.9545] [ 1792] [depth= 1] . ( 188 sec) [ -9866.7757] [ 1792] [depth= 1] . ( 189 sec) [ -9866.7626] [ 1792] [depth= 1] . ( 194 sec) [ -9866.7188] [ 1792] [depth= 3] . ( 194 sec) [ -9866.6661] [ 1792] [depth= 1] . ( 199 sec) [ -9866.6374] [ 1792] [depth= 1] . ( 202 sec) [ -9866.5365] [ 1792] [depth= 1] . ( 203 sec) [ -9854.0464] [ 1791] [depth= 3] . ( 203 sec) [ -9853.9430] [ 1791] [depth= 2] . ( 204 sec) [ -9853.8976] [ 1791] [depth= 3] . ( 206 sec) [ -9853.2401] [ 1791] [depth= 2] . ( 206 sec) [ -9851.6930] [ 1791] [depth= 1] . ( 207 sec) [ -9851.6679] [ 1790] [depth= 1] . ( 207 sec) [ -9851.6248] [ 1790] [depth= 1] . ( 208 sec) [ -9850.2661] [ 1790] [depth= 2] . ( 208 sec) [ -9850.2509] [ 1790] [depth= 4] . ( 209 sec) [ -9837.7813] [ 1806] [depth= 1] . ( 209 sec) [ -9832.9934] [ 1803] [depth= 1] . ( 211 sec) [ -9832.9427] [ 1803] [depth= 1] . ( 212 sec) [ -9832.9099] [ 1803] [depth= 1] . ( 212 sec) [ -9832.8852] [ 1803] [depth= 1] . ( 213 sec) [ -9779.2660] [Branch lengths ] . ( 223 sec) [ -9778.2679] [GTR parameters ] . ( 223 sec) [ -9776.5968] [Alpha ][ 0.232144] . ( 226 sec) [ -9774.2157] [ 1802] [depth= 1] . ( 229 sec) [ -9774.1956] [ 1802] [depth= 4] . ( 230 sec) [ -9770.3936] [ 1801] [depth= 5] . ( 233 sec) [ -9770.3370] [ 1801] [depth= 3] . ( 242 sec) [ -9770.3185] [ 1801] [depth= 3] . ( 243 sec) [ -9763.2013] [ 1796] [depth= 1] . ( 249 sec) [ -9763.0634] [ 1796] [depth= 1] . ( 259 sec) [ -9762.7486] [ 1796] [depth= 4] . ( 260 sec) [ -9762.7365] [ 1796] [depth= 1] . ( 261 sec) [ -9762.7241] [ 1796] [depth= 1] . ( 263 sec) [ -9762.7080] [ 1796] [depth= 2] . ( 269 sec) [ -9762.0798] [ 1794] [depth= 1] . ( 275 sec) [ -9761.9476] [ 1794] [depth= 2] . ( 276 sec) [ -9761.9073] [ 1794] [depth= 2] . ( 279 sec) [ -9761.8431] [ 1794] [depth= 1] . ( 283 sec) [ -9761.6451] [ 1794] [depth= 1] . ( 290 sec) [ -9761.5239] [ 1794] [depth= 4] . ( 300 sec) [ -9761.3674] [ 1794] [depth= 1] . ( 303 sec) [ -9761.3556] [ 1794] [depth= 3] . ( 306 sec) [ -9760.9457] [ 1794] [depth= 1] . ( 313 sec) [ -9760.9354] [ 1794] [depth= 3] . ( 328 sec) [ -9760.9159] [ 1794] [depth= 2] . ( 333 sec) [ -9760.9058] [ 1794] [depth= 2] . ( 343 sec) [ -9758.4349] [ 1794] [depth= 1] . ( 348 sec) [ -9758.3290] [ 1794] [depth= 1] . ( 366 sec) [ -9758.3049] [ 1794] [depth= 3] . ( 366 sec) [ -9757.9999] [ 1794] [depth= 1] . ( 370 sec) [ -9757.9894] [ 1794] [depth= 5] . ( 373 sec) [ -9757.9368] [ 1794] [depth= 1] . ( 376 sec) [ -9745.1421] [Branch lengths ] . ( 388 sec) [ -9744.8107] [GTR parameters ] . ( 388 sec) [ -9743.9056] [Alpha ][ 0.219422] . ( 400 sec) [ -9743.8339] [ 1794] [depth= 1] . ( 403 sec) [ -9743.8164] [ 1794] [depth= 3] . ( 409 sec) [ -9743.8013] [ 1794] [depth= 2] . ( 422 sec) [ -9743.7897] [ 1794] [depth= 2] . ( 435 sec) [ -9743.7720] [ 1794] [depth= 4] . ( 445 sec) [ -9743.7523] [ 1794] [depth= 1] . ( 454 sec) [ -9742.8680] [ 1794] [depth= 2] . ( 456 sec) [ -9742.7868] [ 1794] [depth= 2] . ( 467 sec) [ -9742.6693] [ 1794] [depth= 4] . ( 475 sec) [ -9742.6518] [ 1794] [depth= 3] . ( 478 sec) [ -9742.6379] [ 1794] [depth= 1] . ( 496 sec) [ -9742.6227] [ 1794] [depth= 2] . ( 507 sec) [ -9742.6068] [ 1794] [depth= 2] . ( 517 sec) [ -9741.2813] [ 1794] [depth= 1] . ( 522 sec) [ -9741.2533] [ 1794] [depth= 1] . ( 529 sec) [ -9741.2356] [ 1795] [depth= 2] . ( 544 sec) [ -9741.2011] [ 1795] [depth= 3] . ( 554 sec) [ -9741.1636] [ 1795] [depth= 1] . ( 555 sec) [ -9735.9818] [Branch lengths ] . ( 560 sec) [ -9735.8594] [GTR parameters ] . ( 560 sec) [ -9735.2541] [Alpha ][ 0.209693] . ( 563 sec) [ -9735.2423] [ 1795] [depth= 5] . ( 647 sec) [ -9735.2246] [ 1795] [depth= 1] . ( 672 sec) [ -9735.2105] [ 1795] [depth= 3] . ( 684 sec) [ -9734.6310] [ 1795] [depth= 1] . ( 689 sec) [ -9734.5142] [ 1795] [depth= 1] . ( 690 sec) [ -9734.4988] [ 1795] [depth= 1] . ( 716 sec) [ -9734.4852] [ 1795] [depth= 4] . ( 717 sec) [ -9731.8271] [Branch lengths ] . ( 722 sec) [ -9731.7338] [GTR parameters ] . ( 723 sec) [ -9731.3386] [Alpha ][ 0.202160] . ( 862 sec) [ -9731.2745] [ 1795] [depth= 1] . ( 867 sec) [ -9731.0308] [ 1795] [depth= 1] . ( 902 sec) [ -9729.5802] [Branch lengths ] . ( 905 sec) [ -9729.5230] [GTR parameters ] . ( 906 sec) [ -9729.3063] [Alpha ][ 0.196754] . ( 1049 sec) [ -9729.0515] [ 1791] [depth= 1] . ( 1083 sec) [ -9726.4775] [Branch lengths ] . ( 1090 sec) [ -9726.4239] [GTR parameters ] . ( 1090 sec) [ -9726.2021] [Alpha ][ 0.191488] . ( 1111 sec) [ -9725.7420] [ 1792] [depth= 1] . ( 1176 sec) [ -9725.1763] [ 1792] [depth= 1] . ( 1186 sec) [ -9725.1091] [ 1792] [depth= 1] . ( 1251 sec) [ -9722.1266] [Branch lengths ] . ( 1256 sec) [ -9722.0312] [GTR parameters ] . ( 1256 sec) [ -9721.9537] [Alpha ][ 0.188470] . ( 1428 sec) [ -9720.8836] [Branch lengths ] . ( 1623 sec) [ -9719.5321] [ 1776] [depth= 1] . ( 1628 sec) [ -9718.1001] [Branch lengths ] . ( 1629 sec) [ -9718.0995] [GTR parameters ] . ( 1630 sec) [ -9718.0158] [Alpha ][ 0.185262] . ( 1817 sec) [ -9717.8611] [Branch lengths ] . ( 1817 sec) [ -9717.8611] [Topology ] . ( 1820 sec) [ -9717.8486] [Topology ] . ( 1824 sec) [ -9717.8425] [Topology ] . ( 1827 sec) [ -9717.8383] [Topology ] . ( 1830 sec) [ -9717.8350] [Topology ] . ( 1833 sec) [ -9717.8322] [Topology ] . ( 1836 sec) [ -9717.8297] [Topology ] . ( 1840 sec) [ -9717.7731] [GTR parameters ] . ( 1841 sec) [ -9717.7425] [Alpha ][ 0.183347] . ( 1841 sec) [ -9717.7425] [Topology ] . ( 1844 sec) [ -9717.7243] [Topology ] . ( 1847 sec) [ -9717.7155] [Topology ] . ( 1850 sec) [ -9717.7099] [Topology ] . ( 1854 sec) [ -9717.7058] [Topology ] . ( 1857 sec) [ -9717.7027] [Topology ] . ( 1860 sec) [ -9717.7000] [Topology ] . ( 1862 sec) [ -9717.6975] [GTR parameters ] . ( 1863 sec) [ -9717.6890] [Alpha ][ 0.182378] . ( 1863 sec) [ -9717.6890] [Topology ] . ( 1866 sec) [ -9717.6828] [Topology ] . ( 1869 sec) [ -9717.6788] [Topology ] . ( 1872 sec) [ -9717.6758] [Topology ] . ( 1876 sec) [ -9717.6733] [Topology ] . ( 1879 sec) [ -9717.6712] [Topology ] . ( 1882 sec) [ -9717.6693] [Topology ] . ( 1884 sec) [ -9717.6685] [GTR parameters ] . ( 1884 sec) [ -9717.6657] [Alpha ][ 0.181858] . ( 1884 sec) [ -9717.6657] [Topology ] . ( 1888 sec) [ -9717.6627] [Topology ] . ( 1891 sec) [ -9717.6605] [Topology ] . ( 1894 sec) [ -9717.6586] [Topology ] . ( 1897 sec) [ -9717.6568] [Topology ] . ( 1901 sec) [ -9717.6553] [Topology ] . ( 1904 sec) [ -9717.6538] [Topology ] . ( 1905 sec) [ -9717.6538] [GTR parameters ] . ( 1906 sec) [ -9717.6528] [Alpha ][ 0.181582] . ( 1906 sec) [ -9717.6528] [Topology ] . ( 1909 sec) [ -9717.6512] [Topology ] . ( 1912 sec) [ -9717.6498] [Topology ] . ( 1916 sec) [ -9717.6484] [Topology ] . ( 1919 sec) [ -9717.6472] [Topology ] . ( 1922 sec) [ -9717.6460] [Topology ] . ( 1925 sec) [ -9717.6449] [Topology ] . ( 1927 sec) [ -9717.6443] [GTR parameters ] . ( 1927 sec) [ -9717.6440] [Alpha ][ 0.181245] . ( 1927 sec) [ -9717.6440] [Topology ] . ( 1931 sec) [ -9717.6424] [Topology ] . ( 1934 sec) [ -9717.6412] [Topology ] . ( 1937 sec) [ -9717.6400] [Topology ] . ( 1940 sec) [ -9717.6389] [Topology ] . ( 1943 sec) [ -9717.6379] [Topology ] . ( 1947 sec) [ -9717.6370] [Topology ] . ( 1949 sec) [ -9717.6369] [GTR parameters ] . ( 1949 sec) [ -9717.6369] [Alpha ][ 0.181245] . ( 1950 sec) [ -9717.6369] [Topology ] . ( 1953 sec) [ -9717.6360] [Topology ] . ( 1955 sec) [ -9717.6359] [GTR parameters ] . ( 1956 sec) [ -9717.6359] [Alpha ][ 0.181245] . ( 1956 sec) [ -9717.6359] [Topology ] . ( 1959 sec) [ -9717.6349] [Topology ] . ( 1960 sec) [ -9717.6349] [GTR parameters ] . ( 1960 sec) [ -9717.6349] [Alpha ][ 0.181245] . Checking for NNIs, optimizing five branches... . ( 1986 sec) [ -9717.5771] [Topology ] . Checking for NNIs, optimizing five branches... . ( 2012 sec) [ -9717.5767] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -9717.576654. . [Random start 3/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 2 sec) [ -49065.5558] [GTR parameters ] . ( 3 sec) [ -48006.5764] [Alpha ][ 0.500960] . ( 3 sec) [ -46863.1530] [ 4864] [depth= 12] . ( 3 sec) [ -45149.3119] [ 4858] [depth= 11] . ( 4 sec) [ -44934.3559] [ 4858] [depth= 1] . ( 4 sec) [ -44143.8872] [ 4848] [depth= 8] . ( 4 sec) [ -43121.7779] [ 4846] [depth= 2] . ( 4 sec) [ -41580.5333] [ 4844] [depth= 10] . ( 4 sec) [ -41559.6633] [ 4841] [depth= 3] . ( 4 sec) [ -41555.8579] [ 4840] [depth= 2] . ( 5 sec) [ -41520.7391] [ 4830] [depth= 2] . ( 5 sec) [ -41490.4544] [ 4829] [depth= 7] . ( 5 sec) [ -41158.7194] [ 4794] [depth= 4] . ( 5 sec) [ -41154.1294] [ 4791] [depth= 5] . ( 5 sec) [ -40905.1772] [ 4777] [depth= 4] . ( 6 sec) [ -40502.4244] [ 4777] [depth= 6] . ( 6 sec) [ -40476.0482] [ 4776] [depth= 1] . ( 6 sec) [ -40443.7781] [ 4776] [depth= 5] . ( 6 sec) [ -40378.9269] [ 4772] [depth= 7] . ( 6 sec) [ -40376.9075] [ 4773] [depth= 1] . ( 7 sec) [ -39618.6119] [ 4766] [depth= 25] . ( 7 sec) [ -38825.3808] [ 4621] [depth= 25] . ( 7 sec) [ -38444.2410] [ 4612] [depth= 1] . ( 7 sec) [ -38415.0428] [ 4612] [depth= 9] . ( 8 sec) [ -38393.7916] [ 4608] [depth= 19] . ( 8 sec) [ -38380.8653] [ 4605] [depth= 1] . ( 8 sec) [ -38228.5400] [ 4587] [depth= 9] . ( 8 sec) [ -37165.7635] [ 4466] [depth= 13] . ( 8 sec) [ -36831.6556] [ 4448] [depth= 20] . ( 9 sec) [ -36629.1513] [ 4443] [depth= 11] . ( 9 sec) [ -34973.6800] [ 4399] [depth= 11] . ( 9 sec) [ -34878.1462] [ 4383] [depth= 14] . ( 9 sec) [ -34780.9413] [ 4363] [depth= 18] . ( 10 sec) [ -33922.6097] [ 4309] [depth= 21] . ( 10 sec) [ -33778.7378] [ 4314] [depth= 11] . ( 10 sec) [ -33494.6915] [ 4301] [depth= 15] . ( 10 sec) [ -33461.4782] [ 4298] [depth= 17] . ( 11 sec) [ -33304.1671] [ 4273] [depth= 8] . ( 11 sec) [ -33300.8901] [ 4273] [depth= 3] . ( 11 sec) [ -33287.6823] [ 4273] [depth= 1] . ( 11 sec) [ -33121.4125] [ 4265] [depth= 5] . ( 11 sec) [ -33043.2827] [ 4265] [depth= 1] . ( 12 sec) [ -32948.0689] [ 4258] [depth= 7] . ( 12 sec) [ -32941.2582] [ 4258] [depth= 4] . ( 12 sec) [ -32817.1273] [ 4236] [depth= 6] . ( 12 sec) [ -32406.9332] [ 4228] [depth= 3] . ( 12 sec) [ -31813.8379] [ 4229] [depth= 15] . ( 13 sec) [ -31712.5755] [ 4210] [depth= 10] . ( 13 sec) [ -31660.8199] [ 4209] [depth= 14] . ( 13 sec) [ -31597.1185] [ 4207] [depth= 7] . ( 13 sec) [ -31584.6323] [ 4203] [depth= 12] . ( 13 sec) [ -28499.1628] [ 4169] [depth= 10] . ( 14 sec) [ -28242.1345] [ 4169] [depth= 11] . ( 14 sec) [ -27951.4284] [ 4142] [depth= 16] . ( 14 sec) [ -27304.7227] [ 4142] [depth= 2] . ( 14 sec) [ -27011.7073] [ 4017] [depth= 27] . ( 15 sec) [ -26692.4824] [ 3992] [depth= 10] . ( 15 sec) [ -26354.2835] [ 3878] [depth= 20] . ( 15 sec) [ -26122.3962] [ 3880] [depth= 19] . ( 15 sec) [ -25859.8240] [ 3867] [depth= 11] . ( 16 sec) [ -25852.9167] [ 3867] [depth= 16] . ( 16 sec) [ -25762.0698] [ 3855] [depth= 5] . ( 16 sec) [ -25149.5889] [ 3798] [depth= 12] . ( 16 sec) [ -25025.1577] [ 3784] [depth= 12] . ( 16 sec) [ -25006.2502] [ 3783] [depth= 3] . ( 17 sec) [ -24982.7175] [ 3783] [depth= 4] . ( 17 sec) [ -24911.9703] [ 3775] [depth= 7] . ( 17 sec) [ -24840.7151] [ 3769] [depth= 15] . ( 17 sec) [ -24783.6914] [ 3756] [depth= 6] . ( 18 sec) [ -24729.5961] [ 3752] [depth= 9] . ( 18 sec) [ -24625.4764] [ 3739] [depth= 15] . ( 18 sec) [ -24585.2154] [ 3734] [depth= 3] . ( 18 sec) [ -24286.5945] [ 3733] [depth= 2] . ( 19 sec) [ -24227.5554] [ 3650] [depth= 19] . ( 19 sec) [ -24223.8005] [ 3650] [depth= 10] . ( 19 sec) [ -23935.0112] [ 3647] [depth= 2] . ( 19 sec) [ -23886.5393] [ 3645] [depth= 3] . ( 19 sec) [ -23840.8513] [ 3637] [depth= 7] . ( 20 sec) [ -23836.2314] [ 3636] [depth= 2] . ( 20 sec) [ -23835.7871] [ 3636] [depth= 1] . ( 20 sec) [ -23756.0122] [ 3633] [depth= 14] . ( 20 sec) [ -23676.6663] [ 3632] [depth= 8] . ( 20 sec) [ -23666.6766] [ 3624] [depth= 2] . ( 21 sec) [ -23617.4994] [ 3619] [depth= 4] . ( 21 sec) [ -23448.2101] [ 3622] [depth= 1] . ( 21 sec) [ -23343.4185] [ 3612] [depth= 4] . ( 21 sec) [ -23116.2619] [ 3588] [depth= 12] . ( 21 sec) [ -22817.0743] [ 3572] [depth= 7] . ( 22 sec) [ -22810.8570] [ 3572] [depth= 1] . ( 22 sec) [ -22769.2088] [ 3569] [depth= 2] . ( 22 sec) [ -22758.5132] [ 3571] [depth= 2] . ( 22 sec) [ -22720.9192] [ 3569] [depth= 1] . ( 23 sec) [ -22665.0141] [ 3565] [depth= 15] . ( 23 sec) [ -22642.0023] [ 3564] [depth= 1] . ( 23 sec) [ -22548.6715] [ 3554] [depth= 6] . ( 23 sec) [ -21352.1879] [ 3554] [depth= 1] . ( 23 sec) [ -21209.2107] [ 3552] [depth= 14] . ( 24 sec) [ -20981.6894] [ 3399] [depth= 15] . ( 24 sec) [ -20874.5825] [ 3402] [depth= 1] . ( 24 sec) [ -20518.4633] [ 3361] [depth= 9] . ( 24 sec) [ -20439.4982] [ 3361] [depth= 10] . ( 24 sec) [ -20318.4426] [ 3363] [depth= 1] . ( 25 sec) [ -20269.8732] [ 3354] [depth= 6] . ( 25 sec) [ -20264.5045] [ 3354] [depth= 3] . ( 25 sec) [ -20263.0044] [ 3354] [depth= 3] . ( 25 sec) [ -20260.5763] [ 3354] [depth= 3] . ( 25 sec) [ -20254.3302] [ 3354] [depth= 2] . ( 26 sec) [ -20188.0505] [ 3349] [depth= 10] . ( 26 sec) [ -20118.8382] [ 3349] [depth= 16] . ( 26 sec) [ -19828.2849] [ 3276] [depth= 11] . ( 26 sec) [ -19796.4746] [ 3275] [depth= 10] . ( 27 sec) [ -19786.9998] [ 3273] [depth= 1] . ( 27 sec) [ -19744.2970] [ 3268] [depth= 20] . ( 27 sec) [ -19742.7662] [ 3268] [depth= 16] . ( 27 sec) [ -19501.4396] [ 3263] [depth= 3] . ( 28 sec) [ -19501.2369] [ 3263] [depth= 9] . ( 28 sec) [ -19489.7275] [ 3253] [depth= 15] . ( 28 sec) [ -19473.0666] [ 3252] [depth= 24] . ( 28 sec) [ -19399.4256] [ 3243] [depth= 3] . ( 28 sec) [ -18872.4700] [ 3243] [depth= 1] . ( 29 sec) [ -18727.8337] [ 3243] [depth= 5] . ( 29 sec) [ -18513.2025] [ 3238] [depth= 3] . ( 29 sec) [ -18499.6561] [ 3238] [depth= 1] . ( 29 sec) [ -18489.3355] [ 3238] [depth= 23] . ( 30 sec) [ -18487.2251] [ 3238] [depth= 2] . ( 30 sec) [ -18480.4904] [ 3243] [depth= 13] . ( 30 sec) [ -18460.6312] [ 3244] [depth= 9] . ( 31 sec) [ -18455.6219] [ 3180] [depth= 3] . ( 31 sec) [ -18381.5321] [ 3166] [depth= 12] . ( 31 sec) [ -18328.2565] [ 3166] [depth= 4] . ( 31 sec) [ -18301.8823] [ 3164] [depth= 15] . ( 32 sec) [ -18265.6703] [ 3162] [depth= 3] . ( 32 sec) [ -18258.7626] [ 3162] [depth= 2] . ( 32 sec) [ -18193.5099] [ 3162] [depth= 3] . ( 32 sec) [ -18126.9746] [ 3151] [depth= 1] . ( 33 sec) [ -17618.0049] [ 3148] [depth= 2] . ( 33 sec) [ -17303.5531] [ 3157] [depth= 1] . ( 33 sec) [ -17160.5865] [ 3149] [depth= 15] . ( 33 sec) [ -17051.6223] [ 3149] [depth= 1] . ( 34 sec) [ -16991.3755] [ 3141] [depth= 1] . ( 34 sec) [ -16884.1005] [ 3115] [depth= 2] . ( 34 sec) [ -16867.4580] [ 3115] [depth= 4] . ( 34 sec) [ -16599.2190] [ 3100] [depth= 1] . ( 34 sec) [ -16116.0656] [ 2976] [depth= 17] . ( 35 sec) [ -15480.9000] [ 2833] [depth= 14] . ( 35 sec) [ -15456.5620] [ 2828] [depth= 1] . ( 35 sec) [ -15453.8154] [ 2827] [depth= 2] . ( 35 sec) [ -15293.5094] [ 2825] [depth= 2] . ( 36 sec) [ -15281.8548] [ 2824] [depth= 2] . ( 36 sec) [ -15274.9392] [ 2822] [depth= 2] . ( 36 sec) [ -15253.7301] [ 2822] [depth= 1] . ( 36 sec) [ -15184.4743] [ 2822] [depth= 16] . ( 36 sec) [ -15140.1213] [ 2813] [depth= 10] . ( 37 sec) [ -15127.3832] [ 2813] [depth= 16] . ( 37 sec) [ -15097.1350] [ 2805] [depth= 7] . ( 37 sec) [ -15090.4088] [ 2804] [depth= 1] . ( 37 sec) [ -15071.4315] [ 2804] [depth= 1] . ( 39 sec) [ -15009.7961] [ 2805] [depth= 12] . ( 39 sec) [ -14999.9675] [ 2804] [depth= 8] . ( 39 sec) [ -14981.5131] [ 2803] [depth= 12] . ( 39 sec) [ -14917.5254] [ 2793] [depth= 15] . ( 40 sec) [ -14907.7030] [ 2787] [depth= 8] . ( 40 sec) [ -14904.5686] [ 2783] [depth= 1] . ( 40 sec) [ -14873.8584] [ 2781] [depth= 19] . ( 40 sec) [ -14873.7849] [ 2781] [depth= 2] . ( 40 sec) [ -14856.5291] [ 2780] [depth= 13] . ( 41 sec) [ -14816.5633] [ 2766] [depth= 11] . ( 41 sec) [ -14634.4112] [ 2748] [depth= 11] . ( 41 sec) [ -14615.6441] [ 2748] [depth= 1] . ( 42 sec) [ -14615.5642] [ 2748] [depth= 2] . ( 42 sec) [ -14612.6464] [ 2747] [depth= 2] . ( 43 sec) [ -14596.7252] [ 2746] [depth= 7] . ( 43 sec) [ -14530.8795] [ 2746] [depth= 1] . ( 43 sec) [ -14522.5518] [ 2746] [depth= 17] . ( 43 sec) [ -14505.4291] [ 2734] [depth= 8] . ( 44 sec) [ -14499.0528] [ 2732] [depth= 9] . ( 44 sec) [ -14482.8351] [ 2731] [depth= 9] . ( 44 sec) [ -14383.5334] [ 2648] [depth= 7] . ( 45 sec) [ -14383.2156] [ 2648] [depth= 1] . ( 45 sec) [ -14305.2659] [ 2642] [depth= 18] . ( 45 sec) [ -14303.5958] [ 2641] [depth= 9] . ( 45 sec) [ -14303.5358] [ 2641] [depth= 1] . ( 46 sec) [ -14222.9151] [ 2640] [depth= 6] . ( 46 sec) [ -14207.2423] [ 2638] [depth= 10] . ( 46 sec) [ -14207.0570] [ 2638] [depth= 9] . ( 46 sec) [ -14199.4140] [ 2637] [depth= 3] . ( 46 sec) [ -14186.6063] [ 2636] [depth= 1] . ( 47 sec) [ -14174.7809] [ 2636] [depth= 2] . ( 47 sec) [ -14091.6234] [ 2628] [depth= 13] . ( 47 sec) [ -13878.7119] [ 2603] [depth= 10] . ( 47 sec) [ -13860.0416] [ 2601] [depth= 3] . ( 47 sec) [ -13622.9466] [ 2460] [depth= 11] . ( 48 sec) [ -13576.8745] [ 2464] [depth= 1] . ( 48 sec) [ -13574.3686] [ 2464] [depth= 3] . ( 48 sec) [ -13567.8225] [ 2463] [depth= 8] . ( 48 sec) [ -13567.0490] [ 2463] [depth= 3] . ( 49 sec) [ -13538.1718] [ 2456] [depth= 4] . ( 49 sec) [ -13523.4668] [ 2458] [depth= 2] . ( 49 sec) [ -13520.2306] [ 2456] [depth= 1] . ( 49 sec) [ -13513.8274] [ 2454] [depth= 1] . ( 50 sec) [ -13510.3669] [ 2452] [depth= 18] . ( 50 sec) [ -13499.4464] [ 2453] [depth= 8] . ( 50 sec) [ -13383.2939] [ 2450] [depth= 2] . ( 50 sec) [ -13371.6131] [ 2449] [depth= 1] . ( 50 sec) [ -13256.7695] [ 2447] [depth= 7] . ( 51 sec) [ -13254.3116] [ 2447] [depth= 1] . ( 51 sec) [ -13219.1798] [ 2432] [depth= 9] . ( 51 sec) [ -13182.4843] [ 2437] [depth= 1] . ( 51 sec) [ -13173.2378] [ 2434] [depth= 1] . ( 51 sec) [ -13140.9727] [ 2429] [depth= 3] . ( 52 sec) [ -13124.9761] [ 2432] [depth= 1] . ( 52 sec) [ -13122.8898] [ 2432] [depth= 15] . ( 52 sec) [ -13122.1675] [ 2432] [depth= 1] . ( 52 sec) [ -13121.1809] [ 2432] [depth= 2] . ( 53 sec) [ -13061.8406] [ 2418] [depth= 2] . ( 53 sec) [ -12999.9317] [ 2409] [depth= 5] . ( 53 sec) [ -12991.1195] [ 2409] [depth= 1] . ( 53 sec) [ -12971.1896] [ 2409] [depth= 1] . ( 53 sec) [ -12970.2498] [ 2409] [depth= 5] . ( 54 sec) [ -12969.2287] [ 2409] [depth= 2] . ( 54 sec) [ -12965.2540] [ 2408] [depth= 4] . ( 54 sec) [ -12941.5913] [ 2402] [depth= 3] . ( 54 sec) [ -12917.9052] [ 2402] [depth= 3] . ( 55 sec) [ -12891.3667] [ 2392] [depth= 16] . ( 55 sec) [ -12891.1568] [ 2392] [depth= 3] . ( 55 sec) [ -12889.5411] [ 2392] [depth= 4] . ( 56 sec) [ -12783.6934] [ 2343] [depth= 1] . ( 56 sec) [ -12691.0648] [ 2334] [depth= 17] . ( 56 sec) [ -12681.7466] [ 2325] [depth= 5] . ( 56 sec) [ -12677.3370] [ 2324] [depth= 1] . ( 56 sec) [ -12675.9456] [ 2325] [depth= 1] . ( 57 sec) [ -12673.0318] [ 2324] [depth= 1] . ( 57 sec) [ -12668.8930] [ 2322] [depth= 1] . ( 57 sec) [ -12652.9171] [ 2322] [depth= 2] . ( 57 sec) [ -12652.3292] [ 2321] [depth= 1] . ( 58 sec) [ -12649.6453] [ 2322] [depth= 1] . ( 58 sec) [ -12637.9770] [ 2322] [depth= 2] . ( 58 sec) [ -12635.4919] [ 2324] [depth= 1] . ( 58 sec) [ -12622.7911] [ 2328] [depth= 7] . ( 58 sec) [ -12592.8881] [ 2327] [depth= 2] . ( 59 sec) [ -12566.3977] [ 2321] [depth= 6] . ( 59 sec) [ -12497.7176] [ 2295] [depth= 1] . ( 59 sec) [ -12463.4239] [ 2288] [depth= 2] . ( 60 sec) [ -12441.0164] [ 2288] [depth= 1] . ( 60 sec) [ -12437.1188] [ 2288] [depth= 1] . ( 60 sec) [ -12424.5587] [ 2282] [depth= 8] . ( 61 sec) [ -12422.2557] [ 2282] [depth= 1] . ( 61 sec) [ -12419.2088] [ 2282] [depth= 1] . ( 61 sec) [ -12419.1625] [ 2282] [depth= 3] . ( 62 sec) [ -12407.9267] [ 2281] [depth= 6] . ( 62 sec) [ -12395.9155] [ 2285] [depth= 2] . ( 62 sec) [ -12380.9411] [ 2284] [depth= 5] . ( 62 sec) [ -12377.1953] [ 2284] [depth= 2] . ( 63 sec) [ -12371.0623] [ 2284] [depth= 13] . ( 64 sec) [ -12360.7503] [ 2283] [depth= 1] . ( 64 sec) [ -12202.3448] [ 2282] [depth= 2] . ( 64 sec) [ -12197.0136] [ 2278] [depth= 1] . ( 65 sec) [ -12195.9927] [ 2279] [depth= 1] . ( 65 sec) [ -12194.6900] [ 2277] [depth= 4] . ( 65 sec) [ -12193.7330] [ 2277] [depth= 1] . ( 65 sec) [ -12123.6358] [ 2259] [depth= 16] . ( 65 sec) [ -12121.4590] [ 2259] [depth= 6] . ( 66 sec) [ -12016.3373] [ 2215] [depth= 9] . ( 66 sec) [ -12004.3984] [ 2215] [depth= 1] . ( 66 sec) [ -12001.4636] [ 2215] [depth= 2] . ( 66 sec) [ -11999.9080] [ 2215] [depth= 3] . ( 67 sec) [ -11975.6311] [ 2207] [depth= 3] . ( 67 sec) [ -11958.5661] [ 2200] [depth= 6] . ( 67 sec) [ -11943.4666] [ 2198] [depth= 4] . ( 68 sec) [ -11942.9376] [ 2198] [depth= 1] . ( 68 sec) [ -11928.5212] [ 2196] [depth= 6] . ( 68 sec) [ -11859.5128] [ 2180] [depth= 6] . ( 68 sec) [ -11858.6301] [ 2180] [depth= 1] . ( 69 sec) [ -11852.3944] [ 2180] [depth= 5] . ( 69 sec) [ -11852.2044] [ 2180] [depth= 1] . ( 69 sec) [ -11848.4906] [ 2180] [depth= 1] . ( 69 sec) [ -11828.0003] [ 2175] [depth= 5] . ( 70 sec) [ -11827.9553] [ 2175] [depth= 1] . ( 70 sec) [ -11807.7814] [ 2177] [depth= 2] . ( 70 sec) [ -11805.4482] [ 2177] [depth= 1] . ( 71 sec) [ -11767.2019] [ 2169] [depth= 1] . ( 71 sec) [ -11766.5540] [ 2167] [depth= 7] . ( 71 sec) [ -11765.5222] [ 2167] [depth= 1] . ( 71 sec) [ -11762.5224] [ 2167] [depth= 14] . ( 72 sec) [ -11761.0561] [ 2167] [depth= 3] . ( 72 sec) [ -11743.0494] [ 2165] [depth= 3] . ( 72 sec) [ -11739.2822] [ 2165] [depth= 1] . ( 72 sec) [ -11712.5045] [ 2159] [depth= 7] . ( 73 sec) [ -11709.5785] [ 2159] [depth= 2] . ( 73 sec) [ -11702.2216] [ 2159] [depth= 10] . ( 75 sec) [ -11351.8232] [Branch lengths ] . ( 82 sec) [ -11159.2288] [GTR parameters ] . ( 82 sec) [ -11064.3865] [Alpha ][ 0.267450] . ( 82 sec) [ -11060.0215] [ 2157] [depth= 1] . ( 83 sec) [ -11056.1393] [ 2160] [depth= 1] . ( 83 sec) [ -11054.0354] [ 2158] [depth= 1] . ( 86 sec) [ -11021.4955] [ 2150] [depth= 7] . ( 86 sec) [ -11020.3366] [ 2150] [depth= 2] . ( 87 sec) [ -11008.9143] [ 2145] [depth= 7] . ( 88 sec) [ -10965.0134] [ 2130] [depth= 12] . ( 88 sec) [ -10890.2178] [ 2032] [depth= 3] . ( 88 sec) [ -10890.1947] [ 2029] [depth= 3] . ( 89 sec) [ -10888.3820] [ 2029] [depth= 2] . ( 89 sec) [ -10887.5766] [ 2029] [depth= 1] . ( 89 sec) [ -10664.0234] [ 1998] [depth= 6] . ( 90 sec) [ -10647.3168] [ 1997] [depth= 1] . ( 90 sec) [ -10644.9960] [ 1996] [depth= 1] . ( 90 sec) [ -10644.8784] [ 1996] [depth= 2] . ( 90 sec) [ -10615.0188] [ 1975] [depth= 16] . ( 91 sec) [ -10614.5872] [ 1975] [depth= 2] . ( 92 sec) [ -10611.4714] [ 1974] [depth= 1] . ( 95 sec) [ -10610.5367] [ 1974] [depth= 1] . ( 95 sec) [ -10610.5145] [ 1974] [depth= 2] . ( 99 sec) [ -10608.7372] [ 1974] [depth= 1] . ( 99 sec) [ -10608.1177] [ 1975] [depth= 2] . ( 100 sec) [ -10608.0834] [ 1975] [depth= 1] . ( 100 sec) [ -10608.0707] [ 1975] [depth= 1] . ( 101 sec) [ -10607.0083] [ 1977] [depth= 1] . ( 101 sec) [ -10598.3478] [ 1977] [depth= 2] . ( 103 sec) [ -10591.5129] [ 1976] [depth= 1] . ( 103 sec) [ -10587.4528] [ 1972] [depth= 1] . ( 104 sec) [ -10587.3542] [ 1973] [depth= 1] . ( 104 sec) [ -10586.4616] [ 1971] [depth= 1] . ( 105 sec) [ -10586.4280] [ 1971] [depth= 5] . ( 105 sec) [ -10582.1149] [ 1970] [depth= 10] . ( 105 sec) [ -10582.0991] [ 1970] [depth= 1] . ( 106 sec) [ -10567.7152] [ 1964] [depth= 2] . ( 106 sec) [ -10566.5623] [ 1964] [depth= 1] . ( 106 sec) [ -10566.3965] [ 1964] [depth= 1] . ( 107 sec) [ -10563.2277] [ 1963] [depth= 4] . ( 108 sec) [ -10561.4073] [ 1963] [depth= 1] . ( 108 sec) [ -10561.3866] [ 1963] [depth= 1] . ( 110 sec) [ -10528.7109] [ 1957] [depth= 8] . ( 111 sec) [ -10520.4760] [ 1958] [depth= 1] . ( 112 sec) [ -10514.8156] [ 1959] [depth= 1] . ( 115 sec) [ -10511.8082] [ 1959] [depth= 2] . ( 115 sec) [ -10511.7908] [ 1959] [depth= 2] . ( 116 sec) [ -10459.9845] [ 1946] [depth= 16] . ( 119 sec) [ -10452.8181] [ 1945] [depth= 2] . ( 119 sec) [ -10449.3654] [ 1945] [depth= 1] . ( 121 sec) [ -10449.3065] [ 1945] [depth= 2] . ( 122 sec) [ -10448.8588] [ 1945] [depth= 6] . ( 125 sec) [ -10424.7942] [ 1937] [depth= 1] . ( 125 sec) [ -10424.7716] [ 1937] [depth= 2] . ( 125 sec) [ -10424.5735] [ 1937] [depth= 3] . ( 126 sec) [ -10419.3324] [ 1937] [depth= 1] . ( 127 sec) [ -10416.8718] [ 1938] [depth= 6] . ( 127 sec) [ -10416.7906] [ 1938] [depth= 4] . ( 128 sec) [ -10416.0124] [ 1937] [depth= 1] . ( 129 sec) [ -10415.9271] [ 1934] [depth= 2] . ( 129 sec) [ -10414.5018] [ 1934] [depth= 1] . ( 129 sec) [ -10412.5022] [ 1934] [depth= 1] . ( 130 sec) [ -10403.9160] [ 1937] [depth= 1] . ( 130 sec) [ -10403.8255] [ 1938] [depth= 2] . ( 131 sec) [ -10402.9788] [ 1934] [depth= 2] . ( 131 sec) [ -10402.9541] [ 1934] [depth= 1] . ( 133 sec) [ -10392.5576] [ 1937] [depth= 3] . ( 133 sec) [ -10390.7516] [ 1938] [depth= 3] . ( 134 sec) [ -10382.7422] [ 1938] [depth= 1] . ( 134 sec) [ -10382.3089] [ 1938] [depth= 1] . ( 136 sec) [ -10382.2794] [ 1938] [depth= 1] . ( 138 sec) [ -10381.6888] [ 1938] [depth= 8] . ( 139 sec) [ -10381.2217] [ 1938] [depth= 1] . ( 141 sec) [ -10381.1767] [ 1938] [depth= 6] . ( 142 sec) [ -10380.1896] [ 1938] [depth= 2] . ( 142 sec) [ -10380.1126] [ 1938] [depth= 2] . ( 142 sec) [ -10379.2013] [ 1938] [depth= 4] . ( 143 sec) [ -10379.1827] [ 1937] [depth= 3] . ( 146 sec) [ -10348.3685] [ 1949] [depth= 20] . ( 146 sec) [ -10344.1735] [ 1948] [depth= 5] . ( 147 sec) [ -10342.5522] [ 1948] [depth= 4] . ( 147 sec) [ -10341.7150] [ 1948] [depth= 2] . ( 147 sec) [ -10309.3500] [ 1939] [depth= 1] . ( 147 sec) [ -10308.3581] [ 1944] [depth= 2] . ( 148 sec) [ -10305.5520] [ 1940] [depth= 3] . ( 148 sec) [ -10182.4319] [ 1889] [depth= 19] . ( 148 sec) [ -10182.4217] [ 1889] [depth= 4] . ( 148 sec) [ -10075.0780] [ 1822] [depth= 18] . ( 149 sec) [ -10074.9606] [ 1822] [depth= 1] . ( 149 sec) [ -10074.4567] [ 1822] [depth= 1] . ( 149 sec) [ -10070.5992] [ 1821] [depth= 3] . ( 149 sec) [ -10070.5586] [ 1821] [depth= 1] . ( 150 sec) [ -10069.7491] [ 1821] [depth= 3] . ( 150 sec) [ -10069.6457] [ 1821] [depth= 1] . ( 150 sec) [ -10067.5474] [ 1820] [depth= 2] . ( 151 sec) [ -10008.4966] [ 1815] [depth= 4] . ( 152 sec) [ -9978.5562] [ 1818] [depth= 1] . ( 154 sec) [ -9978.3581] [ 1818] [depth= 3] . ( 154 sec) [ -9978.1933] [ 1818] [depth= 1] . ( 155 sec) [ -9978.1080] [ 1818] [depth= 1] . ( 155 sec) [ -9975.9602] [ 1820] [depth= 9] . ( 156 sec) [ -9974.1098] [ 1820] [depth= 1] . ( 157 sec) [ -9963.9663] [ 1830] [depth= 1] . ( 157 sec) [ -9961.2700] [ 1819] [depth= 12] . ( 158 sec) [ -9957.4064] [ 1817] [depth= 1] . ( 158 sec) [ -9953.3754] [ 1816] [depth= 12] . ( 159 sec) [ -9951.3102] [ 1815] [depth= 5] . ( 160 sec) [ -9951.0471] [ 1815] [depth= 3] . ( 160 sec) [ -9941.1703] [ 1819] [depth= 3] . ( 161 sec) [ -9926.0269] [ 1815] [depth= 1] . ( 163 sec) [ -9925.8697] [ 1815] [depth= 4] . ( 164 sec) [ -9917.8996] [ 1808] [depth= 10] . ( 165 sec) [ -9917.3369] [ 1808] [depth= 4] . ( 165 sec) [ -9904.2030] [ 1796] [depth= 8] . ( 166 sec) [ -9902.0633] [ 1794] [depth= 1] . ( 168 sec) [ -9902.0485] [ 1794] [depth= 4] . ( 168 sec) [ -9901.5176] [ 1794] [depth= 1] . ( 168 sec) [ -9901.4837] [ 1794] [depth= 1] . ( 169 sec) [ -9901.4651] [ 1794] [depth= 3] . ( 169 sec) [ -9901.4307] [ 1794] [depth= 1] . ( 171 sec) [ -9901.3754] [ 1794] [depth= 4] . ( 173 sec) [ -9898.0189] [ 1793] [depth= 2] . ( 173 sec) [ -9897.6418] [ 1794] [depth= 1] . ( 173 sec) [ -9895.2091] [ 1794] [depth= 4] . ( 175 sec) [ -9895.1814] [ 1794] [depth= 1] . ( 175 sec) [ -9895.1161] [ 1794] [depth= 3] . ( 178 sec) [ -9895.0496] [ 1794] [depth= 2] . ( 178 sec) [ -9895.0358] [ 1794] [depth= 3] . ( 178 sec) [ -9895.0205] [ 1794] [depth= 2] . ( 180 sec) [ -9894.8201] [ 1794] [depth= 1] . ( 180 sec) [ -9894.7604] [ 1794] [depth= 1] . ( 181 sec) [ -9893.6699] [ 1794] [depth= 1] . ( 181 sec) [ -9893.6560] [ 1793] [depth= 1] . ( 181 sec) [ -9893.6365] [ 1793] [depth= 1] . ( 182 sec) [ -9893.5346] [ 1789] [depth= 1] . ( 183 sec) [ -9893.4560] [ 1789] [depth= 2] . ( 183 sec) [ -9893.4331] [ 1789] [depth= 2] . ( 183 sec) [ -9893.3210] [ 1789] [depth= 3] . ( 184 sec) [ -9893.3109] [ 1789] [depth= 1] . ( 184 sec) [ -9893.2959] [ 1788] [depth= 1] . ( 184 sec) [ -9891.7595] [ 1788] [depth= 1] . ( 185 sec) [ -9891.7124] [ 1788] [depth= 1] . ( 186 sec) [ -9818.5358] [Branch lengths ] . ( 189 sec) [ -9816.8684] [GTR parameters ] . ( 189 sec) [ -9815.6429] [Alpha ][ 0.248893] . ( 190 sec) [ -9814.6768] [ 1789] [depth= 2] . ( 190 sec) [ -9813.4162] [ 1788] [depth= 1] . ( 191 sec) [ -9813.3989] [ 1788] [depth= 2] . ( 191 sec) [ -9813.2058] [ 1788] [depth= 1] . ( 196 sec) [ -9813.1912] [ 1788] [depth= 3] . ( 205 sec) [ -9813.0946] [ 1788] [depth= 4] . ( 209 sec) [ -9813.0680] [ 1788] [depth= 3] . ( 210 sec) [ -9808.6250] [ 1786] [depth= 3] . ( 211 sec) [ -9808.2536] [ 1786] [depth= 1] . ( 219 sec) [ -9807.9170] [ 1786] [depth= 1] . ( 237 sec) [ -9807.9037] [ 1786] [depth= 2] . ( 245 sec) [ -9807.6996] [ 1786] [depth= 1] . ( 247 sec) [ -9807.6471] [ 1787] [depth= 1] . ( 247 sec) [ -9807.6277] [ 1787] [depth= 1] . ( 252 sec) [ -9807.5059] [ 1787] [depth= 1] . ( 255 sec) [ -9807.4658] [ 1787] [depth= 1] . ( 259 sec) [ -9807.3894] [ 1787] [depth= 3] . ( 260 sec) [ -9807.3761] [ 1787] [depth= 1] . ( 267 sec) [ -9794.1651] [ 1787] [depth= 3] . ( 274 sec) [ -9794.1503] [ 1787] [depth= 1] . ( 275 sec) [ -9792.7259] [ 1787] [depth= 1] . ( 294 sec) [ -9792.7043] [ 1787] [depth= 3] . ( 295 sec) [ -9791.2355] [ 1791] [depth= 1] . ( 296 sec) [ -9789.0127] [ 1793] [depth= 1] . ( 299 sec) [ -9788.9777] [ 1793] [depth= 3] . ( 301 sec) [ -9788.8207] [ 1792] [depth= 4] . ( 301 sec) [ -9788.8051] [ 1792] [depth= 3] . ( 303 sec) [ -9788.0467] [ 1791] [depth= 3] . ( 303 sec) [ -9788.0183] [ 1791] [depth= 2] . ( 308 sec) [ -9786.9244] [ 1791] [depth= 3] . ( 309 sec) [ -9786.9073] [ 1791] [depth= 3] . ( 314 sec) [ -9786.8313] [ 1791] [depth= 4] . ( 320 sec) [ -9786.7875] [ 1791] [depth= 2] . ( 321 sec) [ -9786.7741] [ 1791] [depth= 3] . ( 323 sec) [ -9768.6685] [Branch lengths ] . ( 326 sec) [ -9768.2442] [GTR parameters ] . ( 327 sec) [ -9767.5701] [Alpha ][ 0.236641] . ( 331 sec) [ -9767.5306] [ 1791] [depth= 4] . ( 332 sec) [ -9767.5066] [ 1791] [depth= 1] . ( 357 sec) [ -9765.8744] [ 1789] [depth= 1] . ( 364 sec) [ -9765.6609] [ 1789] [depth= 1] . ( 379 sec) [ -9765.5793] [ 1789] [depth= 2] . ( 392 sec) [ -9765.5678] [ 1789] [depth= 1] . ( 401 sec) [ -9765.5346] [ 1789] [depth= 2] . ( 404 sec) [ -9765.4500] [ 1789] [depth= 3] . ( 404 sec) [ -9765.4260] [ 1789] [depth= 1] . ( 413 sec) [ -9765.0054] [ 1788] [depth= 1] . ( 418 sec) [ -9763.0730] [ 1788] [depth= 1] . ( 418 sec) [ -9763.0602] [ 1788] [depth= 1] . ( 422 sec) [ -9763.0496] [ 1788] [depth= 1] . ( 424 sec) [ -9763.0179] [ 1788] [depth= 1] . ( 436 sec) [ -9762.9981] [ 1788] [depth= 1] . ( 437 sec) [ -9762.9468] [ 1788] [depth= 2] . ( 441 sec) [ -9762.8506] [ 1788] [depth= 1] . ( 460 sec) [ -9762.8248] [ 1788] [depth= 4] . ( 462 sec) [ -9762.8108] [ 1788] [depth= 2] . ( 470 sec) [ -9762.7971] [ 1788] [depth= 2] . ( 472 sec) [ -9762.7857] [ 1788] [depth= 1] . ( 474 sec) [ -9754.1753] [Branch lengths ] . ( 476 sec) [ -9753.9893] [GTR parameters ] . ( 476 sec) [ -9753.2795] [Alpha ][ 0.225109] . ( 478 sec) [ -9751.7069] [ 1787] [depth= 1] . ( 479 sec) [ -9751.6705] [ 1787] [depth= 2] . ( 485 sec) [ -9751.6512] [ 1787] [depth= 3] . ( 485 sec) [ -9751.5828] [ 1787] [depth= 2] . ( 500 sec) [ -9751.0341] [ 1787] [depth= 1] . ( 508 sec) [ -9750.7855] [ 1787] [depth= 1] . ( 515 sec) [ -9750.7035] [ 1787] [depth= 1] . ( 515 sec) [ -9750.6900] [ 1787] [depth= 3] . ( 520 sec) [ -9750.6656] [ 1787] [depth= 1] . ( 546 sec) [ -9750.6398] [ 1787] [depth= 1] . ( 560 sec) [ -9750.5268] [ 1787] [depth= 1] . ( 574 sec) [ -9750.5130] [ 1787] [depth= 2] . ( 586 sec) [ -9750.4984] [ 1787] [depth= 1] . ( 600 sec) [ -9750.4574] [ 1787] [depth= 3] . ( 627 sec) [ -9750.4403] [ 1787] [depth= 1] . ( 635 sec) [ -9743.6510] [Branch lengths ] . ( 636 sec) [ -9743.5464] [GTR parameters ] . ( 637 sec) [ -9742.6930] [Alpha ][ 0.213391] . ( 646 sec) [ -9742.6782] [ 1787] [depth= 3] . ( 679 sec) [ -9742.6326] [ 1787] [depth= 1] . ( 716 sec) [ -9742.5953] [ 1787] [depth= 2] . ( 722 sec) [ -9742.5728] [ 1787] [depth= 3] . ( 736 sec) [ -9742.5601] [ 1787] [depth= 2] . ( 738 sec) [ -9741.8294] [ 1787] [depth= 1] . ( 750 sec) [ -9741.8190] [ 1787] [depth= 3] . ( 809 sec) [ -9738.6377] [Branch lengths ] . ( 810 sec) [ -9738.5707] [GTR parameters ] . ( 811 sec) [ -9738.1163] [Alpha ][ 0.205222] . ( 837 sec) [ -9737.9170] [ 1787] [depth= 1] . ( 854 sec) [ -9737.9006] [ 1787] [depth= 1] . ( 984 sec) [ -9736.0917] [Branch lengths ] . ( 986 sec) [ -9736.0158] [GTR parameters ] . ( 986 sec) [ -9735.7824] [Alpha ][ 0.199593] . ( 1014 sec) [ -9735.7622] [ 1787] [depth= 1] . ( 1159 sec) [ -9734.5915] [Branch lengths ] . ( 1161 sec) [ -9734.5584] [GTR parameters ] . ( 1161 sec) [ -9734.4130] [Alpha ][ 0.195244] . ( 1321 sec) [ -9733.7538] [Branch lengths ] . ( 1427 sec) [ -9732.2658] [ 1771] [depth= 1] . ( 1475 sec) [ -9732.1986] [ 1771] [depth= 3] . ( 1502 sec) [ -9731.6028] [Branch lengths ] . ( 1503 sec) [ -9731.5788] [GTR parameters ] . ( 1504 sec) [ -9731.4415] [Alpha ][ 0.190968] . ( 1717 sec) [ -9731.2516] [Branch lengths ] . ( 1717 sec) [ -9731.2516] [Topology ] . ( 1720 sec) [ -9730.2898] [Topology ] . ( 1723 sec) [ -9728.3877] [Topology ] . ( 1726 sec) [ -9728.1323] [Topology ] . ( 1730 sec) [ -9728.0555] [Topology ] . ( 1733 sec) [ -9728.0148] [Topology ] . ( 1736 sec) [ -9727.9884] [Topology ] . ( 1739 sec) [ -9727.9663] [Topology ] . ( 1742 sec) [ -9727.8662] [GTR parameters ] . ( 1743 sec) [ -9727.7494] [Alpha ][ 0.187103] . ( 1743 sec) [ -9727.7494] [Topology ] . ( 1746 sec) [ -9727.6680] [Topology ] . ( 1749 sec) [ -9727.6095] [Topology ] . ( 1752 sec) [ -9727.5648] [Topology ] . ( 1756 sec) [ -9727.5286] [Topology ] . ( 1759 sec) [ -9727.5032] [Topology ] . ( 1762 sec) [ -9727.4832] [Topology ] . ( 1763 sec) [ -9727.4732] [GTR parameters ] . ( 1763 sec) [ -9727.4255] [Alpha ][ 0.184717] . ( 1764 sec) [ -9727.4255] [Topology ] . ( 1767 sec) [ -9727.3854] [Topology ] . ( 1770 sec) [ -9727.3553] [Topology ] . ( 1773 sec) [ -9727.3396] [Topology ] . ( 1776 sec) [ -9727.3239] [Topology ] . ( 1780 sec) [ -9727.3213] [Topology ] . ( 1783 sec) [ -9727.3142] [Topology ] . ( 1784 sec) [ -9727.3094] [GTR parameters ] . ( 1785 sec) [ -9727.2768] [Alpha ][ 0.182786] . ( 1785 sec) [ -9727.2768] [Topology ] . ( 1788 sec) [ -9727.2649] [Topology ] . ( 1791 sec) [ -9727.2481] [Topology ] . ( 1795 sec) [ -9727.2504] [Topology ] . Moving backward . ( 1795 sec) [ -9727.1763] [Topology ] . ( 1798 sec) [ -9727.1669] [Topology ] . ( 1801 sec) [ -9727.1602] [Topology ] . ( 1805 sec) [ -9727.1555] [Topology ] . ( 1806 sec) [ -9727.1494] [GTR parameters ] . ( 1806 sec) [ -9727.1384] [Alpha ][ 0.181539] . ( 1806 sec) [ -9727.1384] [Topology ] . ( 1809 sec) [ -9727.1264] [Topology ] . ( 1813 sec) [ -9727.1184] [Topology ] . ( 1816 sec) [ -9727.1128] [Topology ] . ( 1819 sec) [ -9727.1088] [Topology ] . ( 1822 sec) [ -9727.1059] [Topology ] . ( 1825 sec) [ -9727.1038] [Topology ] . ( 1827 sec) [ -9727.1020] [GTR parameters ] . ( 1827 sec) [ -9727.0959] [Alpha ][ 0.180601] . ( 1827 sec) [ -9727.0959] [Topology ] . ( 1830 sec) [ -9727.0901] [Topology ] . ( 1834 sec) [ -9727.0863] [Topology ] . ( 1837 sec) [ -9727.0835] [Topology ] . ( 1840 sec) [ -9727.0815] [Topology ] . ( 1843 sec) [ -9727.0800] [Topology ] . ( 1846 sec) [ -9727.0789] [Topology ] . ( 1848 sec) [ -9727.0780] [GTR parameters ] . ( 1848 sec) [ -9727.0753] [Alpha ][ 0.179958] . ( 1848 sec) [ -9727.0753] [Topology ] . ( 1851 sec) [ -9727.0724] [Topology ] . ( 1854 sec) [ -9727.0705] [Topology ] . ( 1858 sec) [ -9727.0690] [Topology ] . ( 1861 sec) [ -9727.0679] [Topology ] . ( 1864 sec) [ -9727.0671] [Topology ] . ( 1865 sec) [ -9727.0666] [GTR parameters ] . ( 1865 sec) [ -9727.0659] [Alpha ][ 0.179604] . ( 1865 sec) [ -9727.0659] [Topology ] . ( 1869 sec) [ -9727.0644] [Topology ] . ( 1872 sec) [ -9727.0634] [Topology ] . ( 1875 sec) [ -9727.0625] [Topology ] . ( 1876 sec) [ -9727.0624] [GTR parameters ] . ( 1876 sec) [ -9727.0622] [Alpha ][ 0.179367] . ( 1877 sec) [ -9727.0622] [Topology ] . ( 1880 sec) [ -9727.0611] [Topology ] . ( 1883 sec) [ -9727.0602] [Topology ] . ( 1884 sec) [ -9727.0602] [GTR parameters ] . ( 1884 sec) [ -9727.0602] [Alpha ][ 0.179367] . ( 1884 sec) [ -9727.0602] [Topology ] . ( 1887 sec) [ -9727.0595] [Topology ] . ( 1888 sec) [ -9727.0595] [GTR parameters ] . ( 1889 sec) [ -9727.0595] [Alpha ][ 0.179367] . Checking for NNIs, optimizing five branches... . ( 1915 sec) [ -9727.0586] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1942 sec) [ -9727.0576] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -9727.057634. . [Random start 4/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 4 sec) [ -44021.5153] [GTR parameters ] . ( 5 sec) [ -42984.6626] [Alpha ][ 0.500960] . ( 5 sec) [ -41321.8673] [ 5164] [depth= 12] . ( 5 sec) [ -40483.3327] [ 5014] [depth= 7] . ( 5 sec) [ -40137.2718] [ 5013] [depth= 1] . ( 6 sec) [ -39270.9273] [ 5000] [depth= 9] . ( 6 sec) [ -39243.0857] [ 4991] [depth= 2] . ( 6 sec) [ -39220.4873] [ 4990] [depth= 2] . ( 6 sec) [ -38412.7180] [ 4969] [depth= 1] . ( 6 sec) [ -37214.0695] [ 4954] [depth= 7] . ( 7 sec) [ -36755.9794] [ 4918] [depth= 1] . ( 7 sec) [ -36496.7824] [ 4871] [depth= 13] . ( 7 sec) [ -36431.4664] [ 4866] [depth= 5] . ( 8 sec) [ -36093.6839] [ 4865] [depth= 1] . ( 8 sec) [ -35976.6695] [ 4860] [depth= 3] . ( 8 sec) [ -35893.3819] [ 4859] [depth= 3] . ( 8 sec) [ -35863.2609] [ 4859] [depth= 2] . ( 8 sec) [ -35166.2719] [ 4859] [depth= 1] . ( 8 sec) [ -35048.9271] [ 4851] [depth= 2] . ( 9 sec) [ -34512.9245] [ 4850] [depth= 1] . ( 9 sec) [ -34304.2603] [ 4843] [depth= 8] . ( 9 sec) [ -34009.8729] [ 4843] [depth= 1] . ( 9 sec) [ -33992.7788] [ 4842] [depth= 13] . ( 10 sec) [ -33923.6578] [ 4838] [depth= 11] . ( 10 sec) [ -33903.7291] [ 4836] [depth= 13] . ( 10 sec) [ -33893.1364] [ 4836] [depth= 1] . ( 10 sec) [ -33674.8988] [ 4826] [depth= 18] . ( 10 sec) [ -33571.5898] [ 4806] [depth= 7] . ( 11 sec) [ -33418.6007] [ 4807] [depth= 10] . ( 11 sec) [ -33378.0608] [ 4802] [depth= 14] . ( 11 sec) [ -33256.3245] [ 4784] [depth= 18] . ( 11 sec) [ -33254.9574] [ 4784] [depth= 13] . ( 12 sec) [ -32999.8256] [ 4760] [depth= 5] . ( 12 sec) [ -31524.1081] [ 4744] [depth= 8] . ( 12 sec) [ -31167.0364] [ 4744] [depth= 2] . ( 12 sec) [ -31036.3472] [ 4740] [depth= 17] . ( 12 sec) [ -30980.2482] [ 4735] [depth= 2] . ( 13 sec) [ -30849.6565] [ 4729] [depth= 5] . ( 13 sec) [ -30810.9384] [ 4729] [depth= 1] . ( 13 sec) [ -30295.5987] [ 4716] [depth= 14] . ( 13 sec) [ -30214.1992] [ 4710] [depth= 8] . ( 13 sec) [ -29969.2601] [ 4571] [depth= 17] . ( 14 sec) [ -29913.0386] [ 4570] [depth= 3] . ( 14 sec) [ -29848.8950] [ 4570] [depth= 1] . ( 14 sec) [ -29692.8561] [ 4549] [depth= 11] . ( 14 sec) [ -29664.5476] [ 4547] [depth= 13] . ( 15 sec) [ -29560.0426] [ 4539] [depth= 1] . ( 15 sec) [ -29536.0891] [ 4531] [depth= 14] . ( 15 sec) [ -29288.6646] [ 4460] [depth= 20] . ( 15 sec) [ -29288.2121] [ 4460] [depth= 13] . ( 15 sec) [ -29279.1145] [ 4461] [depth= 1] . ( 16 sec) [ -29214.9661] [ 4454] [depth= 11] . ( 16 sec) [ -29181.5646] [ 4451] [depth= 4] . ( 16 sec) [ -29133.0305] [ 4343] [depth= 2] . ( 16 sec) [ -28937.0205] [ 4293] [depth= 8] . ( 16 sec) [ -28848.6711] [ 4286] [depth= 6] . ( 17 sec) [ -28307.8038] [ 4272] [depth= 4] . ( 17 sec) [ -27760.3953] [ 4272] [depth= 1] . ( 17 sec) [ -27662.3806] [ 4268] [depth= 8] . ( 17 sec) [ -27642.9233] [ 4268] [depth= 2] . ( 17 sec) [ -27521.5633] [ 4258] [depth= 15] . ( 18 sec) [ -27230.5128] [ 4258] [depth= 1] . ( 18 sec) [ -27188.6451] [ 4257] [depth= 12] . ( 18 sec) [ -27134.9114] [ 4249] [depth= 3] . ( 18 sec) [ -27014.0476] [ 4169] [depth= 16] . ( 19 sec) [ -26996.9595] [ 4168] [depth= 1] . ( 19 sec) [ -26967.5648] [ 4166] [depth= 20] . ( 19 sec) [ -26955.7978] [ 4166] [depth= 27] . ( 20 sec) [ -26929.6539] [ 4166] [depth= 26] . ( 20 sec) [ -26425.2657] [ 4023] [depth= 7] . ( 20 sec) [ -26267.6821] [ 4020] [depth= 11] . ( 20 sec) [ -26260.4504] [ 4019] [depth= 9] . ( 21 sec) [ -26202.2717] [ 4007] [depth= 7] . ( 21 sec) [ -26117.2119] [ 3998] [depth= 13] . ( 21 sec) [ -26097.6608] [ 3998] [depth= 25] . ( 21 sec) [ -26097.6095] [ 3997] [depth= 26] . ( 21 sec) [ -25645.5000] [ 3852] [depth= 20] . ( 22 sec) [ -25638.9004] [ 3852] [depth= 1] . ( 22 sec) [ -25635.7795] [ 3852] [depth= 1] . ( 22 sec) [ -25007.6158] [ 3708] [depth= 18] . ( 23 sec) [ -24997.8465] [ 3702] [depth= 3] . ( 23 sec) [ -24780.3739] [ 3701] [depth= 2] . ( 24 sec) [ -24775.0497] [ 3701] [depth= 2] . ( 24 sec) [ -24334.6022] [ 3700] [depth= 17] . ( 24 sec) [ -23509.4513] [ 3695] [depth= 18] . ( 24 sec) [ -22472.9356] [ 3695] [depth= 1] . ( 25 sec) [ -22212.7138] [ 3698] [depth= 1] . ( 25 sec) [ -21870.2420] [ 3695] [depth= 23] . ( 26 sec) [ -21590.3999] [ 3550] [depth= 24] . ( 26 sec) [ -21429.8114] [ 3546] [depth= 6] . ( 26 sec) [ -21422.5099] [ 3546] [depth= 1] . ( 26 sec) [ -21420.1261] [ 3549] [depth= 1] . ( 26 sec) [ -21323.6884] [ 3546] [depth= 2] . ( 27 sec) [ -21247.0112] [ 3507] [depth= 20] . ( 27 sec) [ -21173.9901] [ 3506] [depth= 5] . ( 27 sec) [ -21102.5767] [ 3506] [depth= 1] . ( 27 sec) [ -21064.4882] [ 3497] [depth= 11] . ( 27 sec) [ -21028.5039] [ 3488] [depth= 13] . ( 28 sec) [ -21016.7228] [ 3487] [depth= 8] . ( 28 sec) [ -20990.4824] [ 3479] [depth= 10] . ( 28 sec) [ -20849.7297] [ 3473] [depth= 8] . ( 29 sec) [ -20755.4576] [ 3460] [depth= 6] . ( 30 sec) [ -20438.6384] [ 3354] [depth= 2] . ( 30 sec) [ -20361.2714] [ 3354] [depth= 7] . ( 30 sec) [ -19800.4708] [ 3213] [depth= 2] . ( 30 sec) [ -19719.3330] [ 3224] [depth= 1] . ( 30 sec) [ -19630.4092] [ 3207] [depth= 28] . ( 31 sec) [ -19593.9618] [ 3206] [depth= 28] . ( 31 sec) [ -19555.6930] [ 3206] [depth= 1] . ( 31 sec) [ -19453.8186] [ 3206] [depth= 19] . ( 31 sec) [ -19423.2585] [ 3204] [depth= 6] . ( 32 sec) [ -19417.1617] [ 3206] [depth= 1] . ( 32 sec) [ -19416.1899] [ 3203] [depth= 15] . ( 32 sec) [ -19309.4560] [ 3191] [depth= 11] . ( 32 sec) [ -19280.5293] [ 3186] [depth= 2] . ( 33 sec) [ -19267.8957] [ 3184] [depth= 9] . ( 33 sec) [ -18992.3299] [ 3165] [depth= 9] . ( 33 sec) [ -18917.3369] [ 3160] [depth= 11] . ( 33 sec) [ -18660.4207] [ 3112] [depth= 10] . ( 34 sec) [ -18653.8007] [ 3110] [depth= 2] . ( 34 sec) [ -18644.8950] [ 3109] [depth= 17] . ( 34 sec) [ -18642.2148] [ 3109] [depth= 11] . ( 34 sec) [ -18507.2208] [ 3103] [depth= 2] . ( 34 sec) [ -18499.1202] [ 3102] [depth= 7] . ( 35 sec) [ -18460.3530] [ 3047] [depth= 4] . ( 35 sec) [ -18429.4930] [ 3040] [depth= 3] . ( 35 sec) [ -18421.9923] [ 3039] [depth= 9] . ( 35 sec) [ -18415.1657] [ 3037] [depth= 6] . ( 35 sec) [ -18037.7364] [ 3039] [depth= 9] . ( 36 sec) [ -17759.0666] [ 3016] [depth= 6] . ( 36 sec) [ -17736.4206] [ 3014] [depth= 15] . ( 36 sec) [ -17710.7044] [ 3118] [depth= 2] . ( 36 sec) [ -17376.5122] [ 2974] [depth= 11] . ( 37 sec) [ -17144.1211] [ 2872] [depth= 3] . ( 37 sec) [ -17065.5935] [ 2828] [depth= 14] . ( 38 sec) [ -16216.6433] [ 2826] [depth= 2] . ( 38 sec) [ -15563.9464] [ 2822] [depth= 9] . ( 38 sec) [ -15528.7031] [ 2827] [depth= 1] . ( 38 sec) [ -15476.7243] [ 2822] [depth= 1] . ( 39 sec) [ -15398.4834] [ 2766] [depth= 15] . ( 39 sec) [ -15335.5016] [ 2752] [depth= 9] . ( 39 sec) [ -15328.1551] [ 2762] [depth= 1] . ( 39 sec) [ -15196.1943] [ 2704] [depth= 20] . ( 40 sec) [ -15195.3529] [ 2704] [depth= 1] . ( 40 sec) [ -15177.5287] [ 2703] [depth= 19] . ( 40 sec) [ -15135.8678] [ 2692] [depth= 16] . ( 40 sec) [ -15134.9281] [ 2692] [depth= 11] . ( 40 sec) [ -15068.5954] [ 2685] [depth= 3] . ( 41 sec) [ -15034.7671] [ 2682] [depth= 1] . ( 41 sec) [ -14862.8637] [ 2601] [depth= 15] . ( 41 sec) [ -14820.0041] [ 2601] [depth= 1] . ( 41 sec) [ -14755.5772] [ 2593] [depth= 10] . ( 42 sec) [ -14746.1127] [ 2591] [depth= 9] . ( 42 sec) [ -14744.7018] [ 2593] [depth= 21] . ( 42 sec) [ -14739.6094] [ 2594] [depth= 1] . ( 42 sec) [ -14613.5119] [ 2581] [depth= 12] . ( 43 sec) [ -14606.1376] [ 2580] [depth= 1] . ( 43 sec) [ -14598.0119] [ 2578] [depth= 1] . ( 43 sec) [ -14572.0445] [ 2578] [depth= 5] . ( 43 sec) [ -14053.1870] [ 2544] [depth= 1] . ( 43 sec) [ -13977.4557] [ 2546] [depth= 3] . ( 44 sec) [ -13776.3995] [ 2547] [depth= 1] . ( 44 sec) [ -13723.3449] [ 2536] [depth= 17] . ( 44 sec) [ -13714.0789] [ 2537] [depth= 2] . ( 45 sec) [ -13630.2027] [ 2532] [depth= 4] . ( 45 sec) [ -13170.8559] [ 2405] [depth= 15] . ( 45 sec) [ -13154.6574] [ 2397] [depth= 17] . ( 45 sec) [ -12964.5472] [ 2369] [depth= 17] . ( 46 sec) [ -12846.3603] [ 2330] [depth= 21] . ( 46 sec) [ -12820.9041] [ 2330] [depth= 16] . ( 46 sec) [ -12820.6154] [ 2330] [depth= 1] . ( 46 sec) [ -12820.2927] [ 2330] [depth= 7] . ( 46 sec) [ -12792.0219] [ 2328] [depth= 8] . ( 47 sec) [ -12770.5491] [ 2328] [depth= 1] . ( 47 sec) [ -12759.5365] [ 2326] [depth= 11] . ( 47 sec) [ -12752.9199] [ 2324] [depth= 16] . ( 47 sec) [ -12750.5151] [ 2324] [depth= 9] . ( 48 sec) [ -12724.2273] [ 2324] [depth= 1] . ( 48 sec) [ -12697.9425] [ 2320] [depth= 8] . ( 48 sec) [ -12696.0453] [ 2320] [depth= 2] . ( 49 sec) [ -12695.8040] [ 2320] [depth= 2] . ( 49 sec) [ -12689.1458] [ 2320] [depth= 2] . ( 49 sec) [ -12689.1357] [ 2320] [depth= 6] . ( 50 sec) [ -12688.3482] [ 2321] [depth= 4] . ( 50 sec) [ -12650.3661] [ 2309] [depth= 4] . ( 50 sec) [ -12644.6326] [ 2309] [depth= 1] . ( 51 sec) [ -12644.3642] [ 2309] [depth= 4] . ( 51 sec) [ -12633.3029] [ 2308] [depth= 6] . ( 52 sec) [ -12594.2825] [ 2308] [depth= 3] . ( 52 sec) [ -12594.1366] [ 2308] [depth= 6] . ( 52 sec) [ -12503.4921] [ 2272] [depth= 10] . ( 53 sec) [ -12493.0248] [ 2273] [depth= 2] . ( 53 sec) [ -12489.4914] [ 2274] [depth= 1] . ( 53 sec) [ -12418.5052] [ 2267] [depth= 8] . ( 54 sec) [ -12414.7115] [ 2271] [depth= 3] . ( 54 sec) [ -12265.2788] [ 2231] [depth= 8] . ( 54 sec) [ -12237.6619] [ 2229] [depth= 7] . ( 54 sec) [ -12211.5733] [ 2228] [depth= 3] . ( 55 sec) [ -12201.6843] [ 2225] [depth= 2] . ( 55 sec) [ -12175.7026] [ 2225] [depth= 15] . ( 55 sec) [ -12168.5247] [ 2224] [depth= 4] . ( 56 sec) [ -12168.4641] [ 2224] [depth= 1] . ( 56 sec) [ -12108.7079] [ 2210] [depth= 16] . ( 56 sec) [ -12071.3887] [ 2203] [depth= 1] . ( 56 sec) [ -12060.5913] [ 2191] [depth= 15] . ( 57 sec) [ -12059.8191] [ 2191] [depth= 1] . ( 57 sec) [ -12046.7780] [ 2189] [depth= 2] . ( 57 sec) [ -12030.5085] [ 2189] [depth= 1] . ( 57 sec) [ -11987.2664] [ 2181] [depth= 4] . ( 58 sec) [ -11966.7810] [ 2175] [depth= 8] . ( 58 sec) [ -11952.8761] [ 2172] [depth= 5] . ( 58 sec) [ -11952.0202] [ 2172] [depth= 1] . ( 58 sec) [ -11946.1737] [ 2174] [depth= 1] . ( 59 sec) [ -11941.4316] [ 2173] [depth= 2] . ( 59 sec) [ -11937.9746] [ 2173] [depth= 2] . ( 59 sec) [ -11937.0599] [ 2173] [depth= 2] . ( 59 sec) [ -11906.7666] [ 2171] [depth= 3] . ( 60 sec) [ -11869.5344] [ 2171] [depth= 1] . ( 60 sec) [ -11834.4108] [ 2167] [depth= 6] . ( 60 sec) [ -11771.4743] [ 2151] [depth= 18] . ( 62 sec) [ -11768.1856] [ 2151] [depth= 1] . ( 62 sec) [ -11760.7697] [ 2153] [depth= 1] . ( 62 sec) [ -11760.3921] [ 2153] [depth= 2] . ( 63 sec) [ -11745.8791] [ 2149] [depth= 4] . ( 63 sec) [ -11743.5921] [ 2149] [depth= 1] . ( 64 sec) [ -11741.5380] [ 2149] [depth= 2] . ( 64 sec) [ -11713.3951] [ 2153] [depth= 9] . ( 64 sec) [ -11712.8061] [ 2151] [depth= 11] . ( 64 sec) [ -11701.5236] [ 2149] [depth= 9] . ( 65 sec) [ -11701.2055] [ 2149] [depth= 1] . ( 65 sec) [ -11699.2086] [ 2150] [depth= 3] . ( 65 sec) [ -11649.3162] [ 2149] [depth= 2] . ( 65 sec) [ -11644.0169] [ 2149] [depth= 2] . ( 66 sec) [ -11643.7878] [ 2149] [depth= 6] . ( 66 sec) [ -11643.2306] [ 2154] [depth= 2] . ( 66 sec) [ -11637.1215] [ 2151] [depth= 10] . ( 66 sec) [ -11623.3940] [ 2148] [depth= 6] . ( 68 sec) [ -11575.7391] [ 2142] [depth= 8] . ( 68 sec) [ -11500.4418] [ 2129] [depth= 20] . ( 68 sec) [ -11496.7150] [ 2129] [depth= 1] . ( 68 sec) [ -11481.3274] [ 2129] [depth= 3] . ( 69 sec) [ -11442.8362] [ 2129] [depth= 2] . ( 69 sec) [ -11442.8084] [ 2129] [depth= 2] . ( 70 sec) [ -11442.1904] [ 2130] [depth= 2] . ( 70 sec) [ -11439.3623] [ 2130] [depth= 4] . ( 70 sec) [ -11433.7761] [ 2129] [depth= 6] . ( 70 sec) [ -11432.9386] [ 2129] [depth= 3] . ( 70 sec) [ -11426.5125] [ 2119] [depth= 1] . ( 71 sec) [ -11391.1319] [ 2112] [depth= 5] . ( 71 sec) [ -11389.6737] [ 2112] [depth= 10] . ( 71 sec) [ -11388.6794] [ 2112] [depth= 1] . ( 71 sec) [ -11330.5081] [ 2102] [depth= 15] . ( 72 sec) [ -11326.0458] [ 2102] [depth= 1] . ( 72 sec) [ -11325.1079] [ 2102] [depth= 2] . ( 72 sec) [ -11308.2349] [ 2097] [depth= 4] . ( 73 sec) [ -11303.7427] [ 2096] [depth= 4] . ( 73 sec) [ -11277.9262] [ 2091] [depth= 1] . ( 73 sec) [ -11274.5747] [ 2091] [depth= 10] . ( 73 sec) [ -11264.7574] [ 2092] [depth= 1] . ( 73 sec) [ -11263.1972] [ 2092] [depth= 1] . ( 74 sec) [ -11261.8083] [ 2093] [depth= 1] . ( 74 sec) [ -11261.3024] [ 2095] [depth= 1] . ( 75 sec) [ -11244.3731] [ 2091] [depth= 6] . ( 75 sec) [ -11244.1622] [ 2091] [depth= 2] . ( 75 sec) [ -11243.3409] [ 2091] [depth= 2] . ( 76 sec) [ -11242.3939] [ 2091] [depth= 1] . ( 76 sec) [ -11241.3060] [ 2091] [depth= 2] . ( 77 sec) [ -11194.1481] [ 2080] [depth= 2] . ( 77 sec) [ -11192.3376] [ 2080] [depth= 3] . ( 77 sec) [ -11179.8564] [ 2080] [depth= 2] . ( 78 sec) [ -11173.4962] [ 2079] [depth= 1] . ( 78 sec) [ -11171.6010] [ 2079] [depth= 1] . ( 78 sec) [ -11159.0630] [ 2078] [depth= 4] . ( 78 sec) [ -11155.5372] [ 2080] [depth= 1] . ( 79 sec) [ -11142.2842] [ 2074] [depth= 3] . ( 79 sec) [ -11142.1712] [ 2075] [depth= 2] . ( 79 sec) [ -11141.9278] [ 2075] [depth= 2] . ( 79 sec) [ -11141.8045] [ 2075] [depth= 2] . ( 80 sec) [ -11140.6543] [ 2077] [depth= 7] . ( 80 sec) [ -11131.0767] [ 2073] [depth= 14] . ( 81 sec) [ -11114.8330] [ 2091] [depth= 1] . ( 81 sec) [ -11049.1616] [ 2059] [depth= 11] . ( 82 sec) [ -11046.0220] [ 2059] [depth= 1] . ( 82 sec) [ -11045.8824] [ 2059] [depth= 5] . ( 82 sec) [ -11041.7596] [ 2060] [depth= 1] . ( 82 sec) [ -11039.8766] [ 2059] [depth= 4] . ( 83 sec) [ -11018.5565] [ 2054] [depth= 3] . ( 83 sec) [ -11012.1621] [ 2054] [depth= 1] . ( 83 sec) [ -11010.4666] [ 2054] [depth= 4] . ( 84 sec) [ -11004.7327] [ 2054] [depth= 2] . ( 84 sec) [ -10983.8619] [ 2052] [depth= 12] . ( 84 sec) [ -10982.8927] [ 2052] [depth= 1] . ( 86 sec) [ -10705.1708] [Branch lengths ] . ( 96 sec) [ -10628.6359] [GTR parameters ] . ( 96 sec) [ -10520.1548] [Alpha ][ 0.250961] . ( 97 sec) [ -10508.7864] [ 2048] [depth= 2] . ( 97 sec) [ -10504.6275] [ 2049] [depth= 14] . ( 97 sec) [ -10504.2684] [ 2048] [depth= 1] . ( 98 sec) [ -10503.3381] [ 2048] [depth= 2] . ( 100 sec) [ -10499.5774] [ 2041] [depth= 9] . ( 100 sec) [ -10486.8507] [ 2040] [depth= 7] . ( 101 sec) [ -10484.8233] [ 2040] [depth= 4] . ( 101 sec) [ -10484.7813] [ 2040] [depth= 1] . ( 101 sec) [ -10482.9567] [ 2040] [depth= 4] . ( 102 sec) [ -10481.7946] [ 2040] [depth= 2] . ( 102 sec) [ -10480.2976] [ 2041] [depth= 4] . ( 102 sec) [ -10479.9018] [ 2041] [depth= 3] . ( 102 sec) [ -10479.6355] [ 2041] [depth= 3] . ( 103 sec) [ -10479.4056] [ 2035] [depth= 1] . ( 104 sec) [ -10478.0574] [ 2030] [depth= 5] . ( 105 sec) [ -10478.0293] [ 2030] [depth= 2] . ( 106 sec) [ -10475.5817] [ 2029] [depth= 1] . ( 107 sec) [ -10459.8455] [ 2019] [depth= 10] . ( 108 sec) [ -10456.8735] [ 2018] [depth= 1] . ( 109 sec) [ -10456.7989] [ 2017] [depth= 14] . ( 110 sec) [ -10456.6832] [ 2018] [depth= 2] . ( 110 sec) [ -10453.3072] [ 2017] [depth= 6] . ( 111 sec) [ -10452.7526] [ 2017] [depth= 3] . ( 113 sec) [ -10451.9973] [ 2017] [depth= 1] . ( 113 sec) [ -10439.9036] [ 2009] [depth= 31] . ( 113 sec) [ -10439.2503] [ 2009] [depth= 4] . ( 114 sec) [ -10439.2391] [ 2009] [depth= 1] . ( 115 sec) [ -10437.1975] [ 2009] [depth= 1] . ( 115 sec) [ -10437.1544] [ 2009] [depth= 4] . ( 118 sec) [ -10409.7928] [ 2011] [depth= 1] . ( 118 sec) [ -10257.7478] [ 1944] [depth= 30] . ( 119 sec) [ -10257.7335] [ 1944] [depth= 1] . ( 119 sec) [ -10256.5728] [ 1941] [depth= 1] . ( 119 sec) [ -10242.1758] [ 1934] [depth= 1] . ( 120 sec) [ -10242.0243] [ 1934] [depth= 1] . ( 120 sec) [ -10241.9761] [ 1933] [depth= 2] . ( 121 sec) [ -10241.2973] [ 1933] [depth= 1] . ( 121 sec) [ -10239.9960] [ 1933] [depth= 2] . ( 121 sec) [ -10239.9260] [ 1933] [depth= 2] . ( 121 sec) [ -10234.6930] [ 1936] [depth= 1] . ( 123 sec) [ -10233.7306] [ 1936] [depth= 2] . ( 123 sec) [ -10232.9816] [ 1934] [depth= 1] . ( 126 sec) [ -10225.6348] [ 1932] [depth= 1] . ( 127 sec) [ -10225.5419] [ 1927] [depth= 2] . ( 128 sec) [ -10225.4480] [ 1927] [depth= 4] . ( 128 sec) [ -10224.7868] [ 1925] [depth= 3] . ( 128 sec) [ -10224.6357] [ 1925] [depth= 1] . ( 128 sec) [ -10222.3911] [ 1927] [depth= 2] . ( 129 sec) [ -10220.0880] [ 1926] [depth= 5] . ( 129 sec) [ -10218.5286] [ 1926] [depth= 3] . ( 129 sec) [ -10218.3986] [ 1926] [depth= 1] . ( 130 sec) [ -10216.2631] [ 1926] [depth= 1] . ( 130 sec) [ -10215.8498] [ 1926] [depth= 4] . ( 131 sec) [ -10122.7494] [ 1852] [depth= 18] . ( 131 sec) [ -10121.1264] [ 1855] [depth= 3] . ( 131 sec) [ -10107.2211] [ 1852] [depth= 12] . ( 132 sec) [ -10106.9259] [ 1852] [depth= 3] . ( 132 sec) [ -10049.5725] [ 1836] [depth= 8] . ( 132 sec) [ -10049.5291] [ 1836] [depth= 2] . ( 132 sec) [ -10044.1718] [ 1834] [depth= 2] . ( 133 sec) [ -10044.1562] [ 1834] [depth= 2] . ( 133 sec) [ -10043.4157] [ 1832] [depth= 1] . ( 135 sec) [ -10043.0280] [ 1832] [depth= 1] . ( 135 sec) [ -10035.1162] [ 1827] [depth= 8] . ( 136 sec) [ -10033.2424] [ 1827] [depth= 2] . ( 136 sec) [ -10025.9511] [ 1828] [depth= 4] . ( 137 sec) [ -10025.2827] [ 1828] [depth= 4] . ( 137 sec) [ -10024.9879] [ 1828] [depth= 3] . ( 138 sec) [ -10018.1453] [ 1828] [depth= 2] . ( 138 sec) [ -10017.8856] [ 1828] [depth= 2] . ( 138 sec) [ -10010.9758] [ 1827] [depth= 4] . ( 139 sec) [ -10010.4668] [ 1827] [depth= 2] . ( 140 sec) [ -10003.5160] [ 1827] [depth= 1] . ( 141 sec) [ -10002.1700] [ 1826] [depth= 4] . ( 143 sec) [ -9999.7742] [ 1826] [depth= 1] . ( 143 sec) [ -9998.5900] [ 1830] [depth= 1] . ( 144 sec) [ -9983.0097] [ 1834] [depth= 3] . ( 145 sec) [ -9982.9321] [ 1834] [depth= 3] . ( 145 sec) [ -9982.8272] [ 1834] [depth= 2] . ( 145 sec) [ -9982.7562] [ 1834] [depth= 3] . ( 145 sec) [ -9982.5078] [ 1833] [depth= 3] . ( 146 sec) [ -9982.4855] [ 1833] [depth= 3] . ( 146 sec) [ -9982.4541] [ 1833] [depth= 2] . ( 147 sec) [ -9982.1634] [ 1833] [depth= 1] . ( 147 sec) [ -9982.1487] [ 1833] [depth= 2] . ( 148 sec) [ -9981.8103] [ 1833] [depth= 3] . ( 148 sec) [ -9981.6589] [ 1833] [depth= 2] . ( 149 sec) [ -9980.0459] [ 1833] [depth= 1] . ( 149 sec) [ -9979.8007] [ 1833] [depth= 3] . ( 150 sec) [ -9979.7845] [ 1833] [depth= 4] . ( 151 sec) [ -9979.7485] [ 1833] [depth= 2] . ( 152 sec) [ -9979.7145] [ 1833] [depth= 1] . ( 152 sec) [ -9979.1259] [ 1833] [depth= 5] . ( 153 sec) [ -9978.8462] [ 1833] [depth= 3] . ( 156 sec) [ -9978.5155] [ 1833] [depth= 4] . ( 160 sec) [ -9977.9566] [ 1836] [depth= 1] . ( 160 sec) [ -9977.8327] [ 1836] [depth= 2] . ( 161 sec) [ -9977.4529] [ 1836] [depth= 1] . ( 161 sec) [ -9975.6855] [ 1836] [depth= 9] . ( 162 sec) [ -9975.6643] [ 1836] [depth= 4] . ( 166 sec) [ -9967.5566] [ 1835] [depth= 1] . ( 166 sec) [ -9967.3029] [ 1836] [depth= 3] . ( 167 sec) [ -9959.2117] [ 1831] [depth= 4] . ( 167 sec) [ -9959.0738] [ 1831] [depth= 1] . ( 168 sec) [ -9958.9295] [ 1831] [depth= 2] . ( 169 sec) [ -9958.7666] [ 1829] [depth= 1] . ( 169 sec) [ -9958.4619] [ 1829] [depth= 1] . ( 170 sec) [ -9957.1995] [ 1829] [depth= 2] . ( 170 sec) [ -9957.1755] [ 1829] [depth= 3] . ( 170 sec) [ -9957.1189] [ 1829] [depth= 1] . ( 170 sec) [ -9956.2276] [ 1828] [depth= 1] . ( 171 sec) [ -9950.3427] [ 1827] [depth= 2] . ( 173 sec) [ -9950.0132] [ 1827] [depth= 1] . ( 177 sec) [ -9949.4245] [ 1826] [depth= 1] . ( 177 sec) [ -9949.3200] [ 1826] [depth= 4] . ( 178 sec) [ -9945.3753] [ 1826] [depth= 6] . ( 179 sec) [ -9944.9702] [ 1824] [depth= 3] . ( 179 sec) [ -9944.3792] [ 1824] [depth= 2] . ( 179 sec) [ -9943.4325] [ 1826] [depth= 3] . ( 179 sec) [ -9942.8583] [ 1826] [depth= 1] . ( 182 sec) [ -9942.7124] [ 1826] [depth= 1] . ( 186 sec) [ -9941.6667] [ 1825] [depth= 3] . ( 187 sec) [ -9941.6169] [ 1825] [depth= 2] . ( 187 sec) [ -9941.5669] [ 1825] [depth= 1] . ( 187 sec) [ -9941.5429] [ 1825] [depth= 1] . ( 188 sec) [ -9941.3412] [ 1825] [depth= 1] . ( 189 sec) [ -9941.3278] [ 1825] [depth= 2] . ( 192 sec) [ -9939.0671] [ 1826] [depth= 3] . ( 194 sec) [ -9937.4531] [ 1825] [depth= 1] . ( 194 sec) [ -9937.3037] [ 1825] [depth= 3] . ( 200 sec) [ -9937.2832] [ 1825] [depth= 4] . ( 200 sec) [ -9937.2692] [ 1825] [depth= 3] . ( 201 sec) [ -9935.5804] [ 1823] [depth= 1] . ( 201 sec) [ -9935.5206] [ 1823] [depth= 2] . ( 204 sec) [ -9935.5090] [ 1823] [depth= 2] . ( 208 sec) [ -9934.7495] [ 1825] [depth= 1] . ( 209 sec) [ -9932.1567] [ 1821] [depth= 1] . ( 209 sec) [ -9931.1589] [ 1821] [depth= 3] . ( 211 sec) [ -9931.1422] [ 1821] [depth= 3] . ( 211 sec) [ -9930.7895] [ 1821] [depth= 4] . ( 212 sec) [ -9928.2383] [ 1817] [depth= 3] . ( 215 sec) [ -9871.9783] [Branch lengths ] . ( 221 sec) [ -9869.9657] [GTR parameters ] . ( 222 sec) [ -9869.0321] [Alpha ][ 0.236114] . ( 223 sec) [ -9868.1622] [ 1818] [depth= 2] . ( 225 sec) [ -9855.6818] [ 1811] [depth= 1] . ( 226 sec) [ -9848.8233] [ 1811] [depth= 1] . ( 227 sec) [ -9848.7888] [ 1811] [depth= 1] . ( 228 sec) [ -9846.4483] [ 1808] [depth= 1] . ( 229 sec) [ -9846.4295] [ 1808] [depth= 1] . ( 232 sec) [ -9846.2817] [ 1808] [depth= 2] . ( 233 sec) [ -9844.9172] [ 1808] [depth= 2] . ( 234 sec) [ -9844.8870] [ 1808] [depth= 1] . ( 236 sec) [ -9844.8626] [ 1808] [depth= 2] . ( 238 sec) [ -9836.3283] [ 1805] [depth= 1] . ( 239 sec) [ -9836.3123] [ 1805] [depth= 4] . ( 242 sec) [ -9836.2926] [ 1805] [depth= 5] . ( 250 sec) [ -9835.7229] [ 1805] [depth= 6] . ( 253 sec) [ -9835.7045] [ 1805] [depth= 1] . ( 256 sec) [ -9835.6035] [ 1805] [depth= 1] . ( 256 sec) [ -9835.5889] [ 1805] [depth= 2] . ( 257 sec) [ -9835.5639] [ 1805] [depth= 3] . ( 258 sec) [ -9835.5485] [ 1805] [depth= 1] . ( 258 sec) [ -9825.1514] [ 1815] [depth= 1] . ( 258 sec) [ -9820.2137] [ 1812] [depth= 4] . ( 260 sec) [ -9820.1965] [ 1812] [depth= 1] . ( 260 sec) [ -9820.1488] [ 1812] [depth= 3] . ( 263 sec) [ -9820.0592] [ 1812] [depth= 1] . ( 263 sec) [ -9820.0269] [ 1812] [depth= 3] . ( 270 sec) [ -9820.0107] [ 1812] [depth= 1] . ( 273 sec) [ -9798.5286] [ 1806] [depth= 3] . ( 274 sec) [ -9798.5020] [ 1806] [depth= 3] . ( 279 sec) [ -9795.2333] [ 1789] [depth= 12] . ( 285 sec) [ -9795.2034] [ 1789] [depth= 1] . ( 285 sec) [ -9795.0697] [ 1789] [depth= 3] . ( 287 sec) [ -9795.0067] [ 1789] [depth= 3] . ( 288 sec) [ -9794.9943] [ 1789] [depth= 4] . ( 288 sec) [ -9794.6242] [ 1790] [depth= 2] . ( 291 sec) [ -9794.6017] [ 1790] [depth= 1] . ( 293 sec) [ -9792.8873] [ 1790] [depth= 6] . ( 302 sec) [ -9792.8766] [ 1789] [depth= 1] . ( 304 sec) [ -9791.9684] [ 1789] [depth= 3] . ( 304 sec) [ -9791.4220] [ 1789] [depth= 1] . ( 306 sec) [ -9791.4098] [ 1789] [depth= 2] . ( 306 sec) [ -9790.5874] [ 1789] [depth= 1] . ( 307 sec) [ -9790.2565] [ 1789] [depth= 3] . ( 309 sec) [ -9790.2431] [ 1789] [depth= 1] . ( 314 sec) [ -9790.1778] [ 1789] [depth= 3] . ( 317 sec) [ -9790.1619] [ 1789] [depth= 1] . ( 322 sec) [ -9790.1500] [ 1789] [depth= 1] . ( 328 sec) [ -9788.9957] [ 1791] [depth= 1] . ( 328 sec) [ -9788.4759] [ 1791] [depth= 1] . ( 329 sec) [ -9788.4639] [ 1791] [depth= 2] . ( 329 sec) [ -9788.4325] [ 1791] [depth= 2] . ( 331 sec) [ -9788.4108] [ 1791] [depth= 1] . ( 335 sec) [ -9787.0131] [ 1791] [depth= 1] . ( 335 sec) [ -9786.8809] [ 1791] [depth= 1] . ( 336 sec) [ -9786.7834] [ 1791] [depth= 1] . ( 336 sec) [ -9786.7687] [ 1791] [depth= 1] . ( 342 sec) [ -9785.6477] [ 1790] [depth= 1] . ( 343 sec) [ -9785.0313] [ 1790] [depth= 1] . ( 345 sec) [ -9784.6384] [ 1791] [depth= 2] . ( 348 sec) [ -9760.6010] [Branch lengths ] . ( 356 sec) [ -9760.2089] [GTR parameters ] . ( 356 sec) [ -9759.4734] [Alpha ][ 0.224605] . ( 360 sec) [ -9759.4502] [ 1791] [depth= 2] . ( 365 sec) [ -9759.4093] [ 1791] [depth= 1] . ( 366 sec) [ -9759.3354] [ 1791] [depth= 2] . ( 368 sec) [ -9759.3209] [ 1791] [depth= 4] . ( 369 sec) [ -9756.9335] [ 1790] [depth= 2] . ( 370 sec) [ -9756.7449] [ 1790] [depth= 1] . ( 370 sec) [ -9756.7336] [ 1790] [depth= 2] . ( 374 sec) [ -9756.3128] [ 1791] [depth= 1] . ( 376 sec) [ -9756.3005] [ 1791] [depth= 3] . ( 376 sec) [ -9756.2400] [ 1791] [depth= 2] . ( 383 sec) [ -9756.2282] [ 1791] [depth= 2] . ( 391 sec) [ -9755.2834] [ 1790] [depth= 2] . ( 392 sec) [ -9755.2166] [ 1790] [depth= 1] . ( 399 sec) [ -9755.1795] [ 1790] [depth= 1] . ( 405 sec) [ -9755.1548] [ 1790] [depth= 3] . ( 406 sec) [ -9755.1237] [ 1790] [depth= 1] . ( 408 sec) [ -9755.1009] [ 1790] [depth= 1] . ( 414 sec) [ -9755.0717] [ 1790] [depth= 2] . ( 420 sec) [ -9755.0419] [ 1790] [depth= 1] . ( 421 sec) [ -9753.9536] [ 1788] [depth= 1] . ( 423 sec) [ -9753.8699] [ 1788] [depth= 4] . ( 424 sec) [ -9753.8505] [ 1788] [depth= 2] . ( 424 sec) [ -9753.8305] [ 1789] [depth= 2] . ( 429 sec) [ -9753.8099] [ 1789] [depth= 2] . ( 430 sec) [ -9753.7667] [ 1789] [depth= 3] . ( 431 sec) [ -9753.6842] [ 1786] [depth= 1] . ( 432 sec) [ -9753.6674] [ 1786] [depth= 5] . ( 432 sec) [ -9753.6297] [ 1786] [depth= 1] . ( 435 sec) [ -9753.5352] [ 1786] [depth= 1] . ( 441 sec) [ -9753.3276] [ 1786] [depth= 11] . ( 445 sec) [ -9753.0968] [ 1786] [depth= 3] . ( 451 sec) [ -9753.0325] [ 1786] [depth= 1] . ( 453 sec) [ -9752.9519] [ 1786] [depth= 1] . ( 457 sec) [ -9751.3528] [ 1785] [depth= 2] . ( 460 sec) [ -9751.0696] [ 1785] [depth= 1] . ( 466 sec) [ -9750.6797] [ 1785] [depth= 1] . ( 467 sec) [ -9750.4563] [ 1786] [depth= 1] . ( 476 sec) [ -9750.4417] [ 1786] [depth= 3] . ( 482 sec) [ -9750.0451] [ 1786] [depth= 3] . ( 482 sec) [ -9749.8536] [ 1787] [depth= 2] . ( 484 sec) [ -9749.1241] [ 1787] [depth= 3] . ( 492 sec) [ -9749.1005] [ 1787] [depth= 1] . ( 497 sec) [ -9748.9319] [ 1786] [depth= 1] . ( 499 sec) [ -9748.9216] [ 1786] [depth= 2] . ( 500 sec) [ -9748.4442] [ 1782] [depth= 2] . ( 503 sec) [ -9733.0336] [Branch lengths ] . ( 508 sec) [ -9732.9043] [GTR parameters ] . ( 509 sec) [ -9731.4106] [Alpha ][ 0.209658] . ( 512 sec) [ -9731.3885] [ 1782] [depth= 3] . ( 514 sec) [ -9731.3345] [ 1782] [depth= 1] . ( 523 sec) [ -9731.2164] [ 1782] [depth= 1] . ( 524 sec) [ -9731.2031] [ 1782] [depth= 2] . ( 527 sec) [ -9731.1582] [ 1784] [depth= 1] . ( 530 sec) [ -9731.1463] [ 1784] [depth= 1] . ( 531 sec) [ -9731.1049] [ 1784] [depth= 1] . ( 546 sec) [ -9731.0692] [ 1784] [depth= 1] . ( 549 sec) [ -9731.0362] [ 1784] [depth= 1] . ( 552 sec) [ -9731.0075] [ 1784] [depth= 3] . ( 587 sec) [ -9730.9916] [ 1784] [depth= 1] . ( 612 sec) [ -9730.9729] [ 1784] [depth= 1] . ( 615 sec) [ -9730.9610] [ 1784] [depth= 1] . ( 623 sec) [ -9730.9142] [ 1784] [depth= 2] . ( 640 sec) [ -9730.8951] [ 1784] [depth= 2] . ( 657 sec) [ -9730.6464] [ 1782] [depth= 1] . ( 664 sec) [ -9725.7121] [Branch lengths ] . ( 669 sec) [ -9725.5352] [GTR parameters ] . ( 670 sec) [ -9724.6196] [Alpha ][ 0.198712] . ( 673 sec) [ -9724.6064] [ 1782] [depth= 2] . ( 685 sec) [ -9724.5741] [ 1782] [depth= 1] . ( 713 sec) [ -9724.5614] [ 1782] [depth= 2] . ( 727 sec) [ -9724.5477] [ 1782] [depth= 2] . ( 732 sec) [ -9724.5288] [ 1782] [depth= 2] . ( 742 sec) [ -9724.5172] [ 1782] [depth= 3] . ( 773 sec) [ -9724.4971] [ 1782] [depth= 1] . ( 826 sec) [ -9721.9683] [Branch lengths ] . ( 831 sec) [ -9721.8620] [GTR parameters ] . ( 832 sec) [ -9721.4156] [Alpha ][ 0.191474] . ( 883 sec) [ -9721.4041] [ 1782] [depth= 2] . ( 993 sec) [ -9720.0419] [Branch lengths ] . ( 998 sec) [ -9719.9931] [GTR parameters ] . ( 999 sec) [ -9719.7455] [Alpha ][ 0.186273] . ( 1162 sec) [ -9719.0550] [Branch lengths ] . ( 1264 sec) [ -9719.0171] [ 1790] [depth= 2] . ( 1359 sec) [ -9718.2076] [ 1791] [depth= 4] . ( 1361 sec) [ -9714.8317] [Branch lengths ] . ( 1368 sec) [ -9714.7035] [GTR parameters ] . ( 1368 sec) [ -9714.3604] [Alpha ][ 0.180488] . ( 1566 sec) [ -9713.5784] [Branch lengths ] . ( 1566 sec) [ -9713.5784] [Topology ] . ( 1569 sec) [ -9712.5890] [Topology ] . ( 1572 sec) [ -9712.1413] [Topology ] . ( 1576 sec) [ -9711.9328] [Topology ] . ( 1579 sec) [ -9711.8446] [Topology ] . ( 1582 sec) [ -9711.8034] [Topology ] . ( 1585 sec) [ -9711.7846] [Topology ] . ( 1589 sec) [ -9711.7758] [Topology ] . ( 1592 sec) [ -9711.7719] [Topology ] . ( 1594 sec) [ -9711.7423] [GTR parameters ] . ( 1595 sec) [ -9711.6190] [Alpha ][ 0.177052] . ( 1595 sec) [ -9711.6190] [Topology ] . ( 1598 sec) [ -9711.5704] [Topology ] . ( 1601 sec) [ -9711.5516] [Topology ] . ( 1605 sec) [ -9711.5436] [Topology ] . ( 1608 sec) [ -9711.5406] [Topology ] . ( 1611 sec) [ -9711.5398] [Topology ] . ( 1614 sec) [ -9711.5336] [GTR parameters ] . ( 1615 sec) [ -9711.5015] [Alpha ][ 0.175330] . ( 1615 sec) [ -9711.5015] [Topology ] . ( 1618 sec) [ -9711.4846] [Topology ] . ( 1621 sec) [ -9711.4789] [Topology ] . ( 1625 sec) [ -9711.4787] [Topology ] . ( 1626 sec) [ -9711.4750] [GTR parameters ] . ( 1626 sec) [ -9711.4681] [Alpha ][ 0.174545] . ( 1627 sec) [ -9711.4681] [Topology ] . ( 1630 sec) [ -9711.4627] [Topology ] . ( 1633 sec) [ -9711.4646] [Topology ] . Moving backward . ( 1633 sec) [ -9711.4485] [Topology ] . ( 1637 sec) [ -9711.4460] [Topology ] . ( 1640 sec) [ -9711.4449] [Topology ] . ( 1643 sec) [ -9711.4444] [Topology ] . ( 1645 sec) [ -9711.4442] [GTR parameters ] . ( 1645 sec) [ -9711.4382] [Alpha ][ 0.173814] . ( 1645 sec) [ -9711.4382] [Topology ] . ( 1649 sec) [ -9711.4348] [Topology ] . ( 1652 sec) [ -9711.4334] [Topology ] . ( 1655 sec) [ -9711.4329] [Topology ] . ( 1657 sec) [ -9711.4325] [GTR parameters ] . ( 1657 sec) [ -9711.4311] [Alpha ][ 0.173484] . ( 1657 sec) [ -9711.4311] [Topology ] . ( 1660 sec) [ -9711.4297] [Topology ] . ( 1664 sec) [ -9711.4293] [Topology ] . ( 1665 sec) [ -9711.4292] [GTR parameters ] . ( 1665 sec) [ -9711.4287] [Alpha ][ 0.173303] . ( 1665 sec) [ -9711.4287] [Topology ] . ( 1668 sec) [ -9711.4281] [Topology ] . ( 1670 sec) [ -9711.4281] [GTR parameters ] . ( 1670 sec) [ -9711.4280] [Alpha ][ 0.173012] . Checking for NNIs, optimizing five branches... . ( 1695 sec) [ -9710.4539] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -9710.453937. . [Random start 5/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 3 sec) [ -42468.0312] [GTR parameters ] . ( 3 sec) [ -41455.2540] [Alpha ][ 0.500960] . ( 4 sec) [ -39623.0807] [ 5093] [depth= 12] . ( 4 sec) [ -36801.0409] [ 4948] [depth= 12] . ( 4 sec) [ -36747.3579] [ 4945] [depth= 1] . ( 4 sec) [ -36718.2294] [ 4943] [depth= 6] . ( 5 sec) [ -36611.3649] [ 4938] [depth= 4] . ( 5 sec) [ -36584.6526] [ 4938] [depth= 10] . ( 5 sec) [ -36410.5110] [ 4935] [depth= 6] . ( 5 sec) [ -35936.1356] [ 4934] [depth= 10] . ( 5 sec) [ -35614.7414] [ 4879] [depth= 3] . ( 6 sec) [ -35581.7415] [ 4876] [depth= 11] . ( 6 sec) [ -35524.7708] [ 4870] [depth= 2] . ( 6 sec) [ -35421.7715] [ 4870] [depth= 4] . ( 6 sec) [ -35407.0779] [ 4865] [depth= 1] . ( 6 sec) [ -35404.5955] [ 4865] [depth= 8] . ( 6 sec) [ -35271.5359] [ 4847] [depth= 6] . ( 7 sec) [ -35219.8510] [ 4847] [depth= 2] . ( 7 sec) [ -35019.0527] [ 4844] [depth= 3] . ( 7 sec) [ -34809.3676] [ 4843] [depth= 5] . ( 7 sec) [ -33964.8257] [ 4837] [depth= 6] . ( 7 sec) [ -33946.9561] [ 4830] [depth= 3] . ( 8 sec) [ -33523.5875] [ 4644] [depth= 14] . ( 8 sec) [ -33502.4044] [ 4643] [depth= 2] . ( 8 sec) [ -33257.3638] [ 4643] [depth= 1] . ( 8 sec) [ -32909.3300] [ 4640] [depth= 7] . ( 8 sec) [ -32752.3814] [ 4640] [depth= 1] . ( 9 sec) [ -32646.9925] [ 4633] [depth= 9] . ( 9 sec) [ -32597.2688] [ 4633] [depth= 1] . ( 9 sec) [ -32584.5284] [ 4629] [depth= 14] . ( 9 sec) [ -32583.8870] [ 4629] [depth= 3] . ( 9 sec) [ -32514.9910] [ 4615] [depth= 23] . ( 10 sec) [ -32505.6730] [ 4615] [depth= 3] . ( 10 sec) [ -32338.3697] [ 4605] [depth= 5] . ( 10 sec) [ -32060.2455] [ 4605] [depth= 6] . ( 10 sec) [ -31992.5199] [ 4604] [depth= 4] . ( 11 sec) [ -31896.6659] [ 4593] [depth= 14] . ( 11 sec) [ -31834.7884] [ 4583] [depth= 1] . ( 11 sec) [ -31696.4798] [ 4583] [depth= 4] . ( 11 sec) [ -31456.8040] [ 4583] [depth= 1] . ( 11 sec) [ -31375.2484] [ 4567] [depth= 20] . ( 12 sec) [ -31233.4703] [ 4565] [depth= 2] . ( 12 sec) [ -31137.6052] [ 4485] [depth= 20] . ( 12 sec) [ -31025.3198] [ 4480] [depth= 3] . ( 12 sec) [ -31010.0925] [ 4480] [depth= 2] . ( 12 sec) [ -30912.1183] [ 4471] [depth= 18] . ( 13 sec) [ -30841.5177] [ 4458] [depth= 4] . ( 13 sec) [ -30812.0178] [ 4458] [depth= 1] . ( 13 sec) [ -30768.5953] [ 4453] [depth= 20] . ( 13 sec) [ -30729.9002] [ 4453] [depth= 15] . ( 14 sec) [ -30650.0245] [ 4436] [depth= 16] . ( 14 sec) [ -30352.3521] [ 4413] [depth= 5] . ( 14 sec) [ -29899.4935] [ 4351] [depth= 13] . ( 14 sec) [ -28438.0289] [ 4349] [depth= 17] . ( 14 sec) [ -28424.3705] [ 4349] [depth= 5] . ( 15 sec) [ -28394.1966] [ 4345] [depth= 13] . ( 15 sec) [ -28350.6722] [ 4335] [depth= 2] . ( 15 sec) [ -27953.2710] [ 4318] [depth= 15] . ( 15 sec) [ -27924.5494] [ 4319] [depth= 1] . ( 16 sec) [ -27689.3577] [ 4250] [depth= 11] . ( 16 sec) [ -27674.7787] [ 4248] [depth= 19] . ( 16 sec) [ -27593.3107] [ 4247] [depth= 11] . ( 16 sec) [ -27531.4644] [ 4226] [depth= 11] . ( 17 sec) [ -27468.0423] [ 4223] [depth= 19] . ( 17 sec) [ -27302.5683] [ 4222] [depth= 2] . ( 17 sec) [ -26921.5060] [ 4216] [depth= 18] . ( 17 sec) [ -26868.3082] [ 4209] [depth= 16] . ( 17 sec) [ -26779.3285] [ 4204] [depth= 2] . ( 17 sec) [ -25708.4648] [ 4199] [depth= 1] . ( 18 sec) [ -25470.9001] [ 4163] [depth= 26] . ( 18 sec) [ -24985.4383] [ 4094] [depth= 1] . ( 18 sec) [ -24519.1730] [ 4060] [depth= 8] . ( 18 sec) [ -24456.2946] [ 4040] [depth= 16] . ( 19 sec) [ -24198.8484] [ 4044] [depth= 1] . ( 19 sec) [ -23370.7670] [ 3897] [depth= 19] . ( 19 sec) [ -23264.8754] [ 3891] [depth= 1] . ( 19 sec) [ -23217.6361] [ 3892] [depth= 7] . ( 19 sec) [ -22987.5357] [ 3879] [depth= 15] . ( 20 sec) [ -22984.6737] [ 3879] [depth= 2] . ( 20 sec) [ -22502.3281] [ 3869] [depth= 2] . ( 20 sec) [ -22481.5207] [ 3874] [depth= 1] . ( 20 sec) [ -22392.0443] [ 3856] [depth= 15] . ( 21 sec) [ -22330.8613] [ 3856] [depth= 19] . ( 21 sec) [ -22251.9705] [ 3729] [depth= 12] . ( 21 sec) [ -22092.0285] [ 3685] [depth= 15] . ( 21 sec) [ -21428.1731] [ 3683] [depth= 19] . ( 22 sec) [ -21388.9004] [ 3683] [depth= 3] . ( 22 sec) [ -21379.7699] [ 3681] [depth= 6] . ( 22 sec) [ -20874.5904] [ 3603] [depth= 9] . ( 22 sec) [ -20861.0445] [ 3601] [depth= 2] . ( 22 sec) [ -20539.8105] [ 3597] [depth= 9] . ( 23 sec) [ -20536.6245] [ 3601] [depth= 1] . ( 23 sec) [ -20454.1854] [ 3514] [depth= 12] . ( 23 sec) [ -20391.9419] [ 3502] [depth= 19] . ( 23 sec) [ -20367.4993] [ 3497] [depth= 20] . ( 24 sec) [ -20280.2968] [ 3493] [depth= 1] . ( 24 sec) [ -20187.2573] [ 3486] [depth= 12] . ( 24 sec) [ -19959.7567] [ 3424] [depth= 5] . ( 24 sec) [ -19928.9503] [ 3421] [depth= 10] . ( 25 sec) [ -19928.4516] [ 3419] [depth= 1] . ( 25 sec) [ -19902.5356] [ 3421] [depth= 1] . ( 25 sec) [ -19721.8888] [ 3419] [depth= 8] . ( 25 sec) [ -19681.2197] [ 3406] [depth= 4] . ( 25 sec) [ -19653.2420] [ 3404] [depth= 6] . ( 26 sec) [ -19535.3317] [ 3386] [depth= 12] . ( 26 sec) [ -19453.4233] [ 3376] [depth= 14] . ( 26 sec) [ -19429.4581] [ 3370] [depth= 2] . ( 26 sec) [ -19370.2560] [ 3361] [depth= 18] . ( 26 sec) [ -19338.7834] [ 3361] [depth= 1] . ( 27 sec) [ -19257.2785] [ 3352] [depth= 12] . ( 27 sec) [ -19190.1234] [ 3352] [depth= 2] . ( 27 sec) [ -19143.6874] [ 3342] [depth= 12] . ( 27 sec) [ -18999.2029] [ 3343] [depth= 3] . ( 28 sec) [ -18382.5962] [ 3343] [depth= 6] . ( 28 sec) [ -18263.2037] [ 3337] [depth= 5] . ( 28 sec) [ -18161.3255] [ 3199] [depth= 3] . ( 28 sec) [ -18156.2342] [ 3199] [depth= 1] . ( 29 sec) [ -18028.2180] [ 3192] [depth= 14] . ( 29 sec) [ -17478.3830] [ 3191] [depth= 1] . ( 29 sec) [ -17241.6700] [ 3140] [depth= 22] . ( 29 sec) [ -17234.4311] [ 3139] [depth= 4] . ( 29 sec) [ -17129.2616] [ 3116] [depth= 15] . ( 30 sec) [ -17055.6939] [ 3100] [depth= 1] . ( 30 sec) [ -16905.3011] [ 2960] [depth= 8] . ( 30 sec) [ -16882.2789] [ 2961] [depth= 2] . ( 30 sec) [ -16844.4305] [ 2961] [depth= 1] . ( 30 sec) [ -16830.9291] [ 2958] [depth= 2] . ( 31 sec) [ -16733.2004] [ 2869] [depth= 11] . ( 31 sec) [ -16731.4460] [ 2880] [depth= 1] . ( 31 sec) [ -16614.9211] [ 2797] [depth= 13] . ( 31 sec) [ -16596.4483] [ 2794] [depth= 1] . ( 32 sec) [ -16159.0398] [ 2790] [depth= 2] . ( 32 sec) [ -16150.8790] [ 2789] [depth= 11] . ( 32 sec) [ -16147.4461] [ 2789] [depth= 1] . ( 32 sec) [ -16093.5424] [ 2778] [depth= 14] . ( 32 sec) [ -16083.1375] [ 2778] [depth= 1] . ( 33 sec) [ -16077.3721] [ 2778] [depth= 3] . ( 33 sec) [ -16048.0373] [ 2778] [depth= 6] . ( 33 sec) [ -16017.0293] [ 2770] [depth= 17] . ( 33 sec) [ -16003.9336] [ 2768] [depth= 6] . ( 33 sec) [ -16000.9061] [ 2768] [depth= 2] . ( 34 sec) [ -15996.2363] [ 2768] [depth= 6] . ( 34 sec) [ -15982.1166] [ 2764] [depth= 9] . ( 34 sec) [ -15981.6484] [ 2767] [depth= 1] . ( 34 sec) [ -15929.6220] [ 2762] [depth= 2] . ( 35 sec) [ -15908.3411] [ 2762] [depth= 10] . ( 35 sec) [ -15884.9865] [ 2760] [depth= 11] . ( 35 sec) [ -15835.1655] [ 2759] [depth= 11] . ( 35 sec) [ -15823.9476] [ 2759] [depth= 1] . ( 35 sec) [ -15823.7688] [ 2760] [depth= 2] . ( 36 sec) [ -15784.4582] [ 2763] [depth= 5] . ( 36 sec) [ -15700.7815] [ 2762] [depth= 2] . ( 36 sec) [ -15622.9249] [ 2752] [depth= 5] . ( 36 sec) [ -15603.8744] [ 2751] [depth= 5] . ( 37 sec) [ -15598.5546] [ 2751] [depth= 2] . ( 37 sec) [ -15540.1815] [ 2750] [depth= 3] . ( 37 sec) [ -15537.3349] [ 2750] [depth= 2] . ( 37 sec) [ -15480.8003] [ 2748] [depth= 6] . ( 38 sec) [ -15477.9851] [ 2748] [depth= 17] . ( 38 sec) [ -15408.3048] [ 2742] [depth= 20] . ( 38 sec) [ -15402.4997] [ 2746] [depth= 1] . ( 38 sec) [ -15401.8659] [ 2745] [depth= 1] . ( 38 sec) [ -15074.1747] [ 2600] [depth= 5] . ( 39 sec) [ -15072.7897] [ 2600] [depth= 6] . ( 39 sec) [ -15072.7661] [ 2600] [depth= 9] . ( 39 sec) [ -15072.0260] [ 2600] [depth= 1] . ( 39 sec) [ -15071.9484] [ 2600] [depth= 1] . ( 40 sec) [ -15064.8033] [ 2601] [depth= 3] . ( 40 sec) [ -15060.4243] [ 2602] [depth= 5] . ( 40 sec) [ -15024.1124] [ 2602] [depth= 3] . ( 41 sec) [ -14973.9568] [ 2598] [depth= 7] . ( 41 sec) [ -14930.4499] [ 2585] [depth= 6] . ( 41 sec) [ -14913.9463] [ 2583] [depth= 22] . ( 41 sec) [ -14895.4415] [ 2582] [depth= 1] . ( 42 sec) [ -14730.2978] [ 2481] [depth= 9] . ( 42 sec) [ -14719.4420] [ 2481] [depth= 1] . ( 42 sec) [ -14498.0407] [ 2443] [depth= 6] . ( 42 sec) [ -14490.7337] [ 2444] [depth= 9] . ( 42 sec) [ -14466.5603] [ 2443] [depth= 2] . ( 43 sec) [ -14462.2034] [ 2440] [depth= 12] . ( 43 sec) [ -14460.5257] [ 2441] [depth= 1] . ( 43 sec) [ -14368.2745] [ 2427] [depth= 7] . ( 43 sec) [ -14367.7059] [ 2427] [depth= 2] . ( 44 sec) [ -14366.1768] [ 2427] [depth= 7] . ( 44 sec) [ -14308.7239] [ 2396] [depth= 9] . ( 44 sec) [ -14303.0332] [ 2392] [depth= 5] . ( 44 sec) [ -14208.5961] [ 2362] [depth= 5] . ( 44 sec) [ -14174.6425] [ 2362] [depth= 3] . ( 45 sec) [ -14155.5663] [ 2365] [depth= 5] . ( 45 sec) [ -14154.2881] [ 2365] [depth= 13] . ( 45 sec) [ -14092.4339] [ 2358] [depth= 7] . ( 45 sec) [ -14048.8457] [ 2348] [depth= 5] . ( 45 sec) [ -14041.7561] [ 2348] [depth= 1] . ( 46 sec) [ -14036.2184] [ 2349] [depth= 1] . ( 46 sec) [ -14028.0678] [ 2349] [depth= 2] . ( 46 sec) [ -14027.7458] [ 2348] [depth= 1] . ( 46 sec) [ -14027.6153] [ 2348] [depth= 2] . ( 46 sec) [ -14026.4046] [ 2348] [depth= 1] . ( 47 sec) [ -13997.3232] [ 2346] [depth= 4] . ( 47 sec) [ -13992.7529] [ 2345] [depth= 18] . ( 47 sec) [ -13988.7903] [ 2342] [depth= 6] . ( 47 sec) [ -13986.2121] [ 2342] [depth= 4] . ( 48 sec) [ -13977.4977] [ 2342] [depth= 22] . ( 48 sec) [ -13962.5066] [ 2339] [depth= 7] . ( 48 sec) [ -13897.5799] [ 2339] [depth= 7] . ( 48 sec) [ -13876.6396] [ 2340] [depth= 4] . ( 49 sec) [ -13870.9710] [ 2337] [depth= 2] . ( 49 sec) [ -13870.0497] [ 2332] [depth= 2] . ( 49 sec) [ -13856.1440] [ 2332] [depth= 8] . ( 49 sec) [ -13850.6405] [ 2326] [depth= 5] . ( 49 sec) [ -13822.2331] [ 2326] [depth= 7] . ( 50 sec) [ -13795.4970] [ 2319] [depth= 10] . ( 50 sec) [ -13792.0131] [ 2313] [depth= 3] . ( 50 sec) [ -13775.3406] [ 2305] [depth= 7] . ( 50 sec) [ -13759.6801] [ 2300] [depth= 4] . ( 50 sec) [ -13694.7810] [ 2292] [depth= 3] . ( 51 sec) [ -13693.3258] [ 2292] [depth= 2] . ( 51 sec) [ -13622.4180] [ 2262] [depth= 1] . ( 51 sec) [ -13588.8769] [ 2255] [depth= 3] . ( 51 sec) [ -13587.5118] [ 2255] [depth= 2] . ( 52 sec) [ -13585.7656] [ 2255] [depth= 13] . ( 52 sec) [ -13579.8731] [ 2255] [depth= 2] . ( 52 sec) [ -13552.3014] [ 2251] [depth= 15] . ( 52 sec) [ -13412.5002] [ 2266] [depth= 1] . ( 52 sec) [ -13367.6074] [ 2266] [depth= 11] . ( 53 sec) [ -13331.8882] [ 2256] [depth= 21] . ( 53 sec) [ -13295.7529] [ 2243] [depth= 15] . ( 53 sec) [ -13291.8790] [ 2243] [depth= 4] . ( 53 sec) [ -12989.3433] [ 2225] [depth= 4] . ( 54 sec) [ -12982.7731] [ 2225] [depth= 3] . ( 54 sec) [ -12982.4387] [ 2225] [depth= 1] . ( 54 sec) [ -12978.8215] [ 2225] [depth= 3] . ( 54 sec) [ -12969.6273] [ 2228] [depth= 12] . ( 54 sec) [ -12954.8251] [ 2227] [depth= 5] . ( 56 sec) [ -12926.6085] [ 2227] [depth= 1] . ( 56 sec) [ -12596.2910] [ 2169] [depth= 11] . ( 56 sec) [ -12591.0017] [ 2171] [depth= 1] . ( 56 sec) [ -12570.3293] [ 2166] [depth= 4] . ( 57 sec) [ -12560.5294] [ 2167] [depth= 2] . ( 57 sec) [ -12527.9397] [ 2158] [depth= 4] . ( 57 sec) [ -12527.6467] [ 2159] [depth= 1] . ( 58 sec) [ -12526.1450] [ 2159] [depth= 2] . ( 58 sec) [ -12466.5452] [ 2152] [depth= 11] . ( 59 sec) [ -12428.4990] [ 2153] [depth= 9] . ( 59 sec) [ -12087.3424] [ 2139] [depth= 8] . ( 59 sec) [ -12076.2163] [ 2138] [depth= 1] . ( 59 sec) [ -12022.4094] [ 2126] [depth= 7] . ( 59 sec) [ -11923.2697] [ 2131] [depth= 1] . ( 60 sec) [ -11649.5752] [ 2121] [depth= 1] . ( 61 sec) [ -11648.6082] [ 2121] [depth= 1] . ( 61 sec) [ -11642.6894] [ 2121] [depth= 2] . ( 61 sec) [ -11635.7553] [ 2120] [depth= 4] . ( 62 sec) [ -11608.1172] [ 2113] [depth= 2] . ( 62 sec) [ -11553.7241] [ 2099] [depth= 23] . ( 62 sec) [ -11483.3509] [ 2088] [depth= 6] . ( 62 sec) [ -11481.1908] [ 2090] [depth= 2] . ( 63 sec) [ -11476.2781] [ 2091] [depth= 4] . ( 63 sec) [ -11475.9676] [ 2090] [depth= 2] . ( 63 sec) [ -11466.3929] [ 2087] [depth= 1] . ( 63 sec) [ -11458.9882] [ 2077] [depth= 3] . ( 63 sec) [ -11441.3270] [ 2075] [depth= 2] . ( 63 sec) [ -11440.6188] [ 2078] [depth= 2] . ( 64 sec) [ -11360.4822] [ 2053] [depth= 2] . ( 64 sec) [ -11345.1547] [ 2051] [depth= 6] . ( 64 sec) [ -11341.8963] [ 2051] [depth= 1] . ( 64 sec) [ -11333.5069] [ 2049] [depth= 4] . ( 64 sec) [ -11330.9978] [ 2049] [depth= 1] . ( 65 sec) [ -11307.4114] [ 2036] [depth= 15] . ( 66 sec) [ -11306.3788] [ 2036] [depth= 2] . ( 66 sec) [ -11304.1596] [ 2036] [depth= 2] . ( 66 sec) [ -11303.8016] [ 2036] [depth= 4] . ( 67 sec) [ -11303.7670] [ 2037] [depth= 1] . ( 67 sec) [ -11286.2741] [ 2038] [depth= 1] . ( 67 sec) [ -11281.5861] [ 2037] [depth= 1] . ( 67 sec) [ -11280.8688] [ 2037] [depth= 4] . ( 67 sec) [ -11274.1257] [ 2035] [depth= 5] . ( 68 sec) [ -11272.0611] [ 2033] [depth= 3] . ( 68 sec) [ -11271.0030] [ 2033] [depth= 1] . ( 69 sec) [ -11267.2021] [ 2033] [depth= 1] . ( 69 sec) [ -11264.4303] [ 2033] [depth= 1] . ( 69 sec) [ -11262.6857] [ 2034] [depth= 1] . ( 70 sec) [ -11249.3966] [ 2032] [depth= 2] . ( 70 sec) [ -11245.5606] [ 2031] [depth= 1] . ( 70 sec) [ -11241.0374] [ 2031] [depth= 3] . ( 70 sec) [ -11239.9932] [ 2031] [depth= 3] . ( 71 sec) [ -11237.5993] [ 2031] [depth= 8] . ( 71 sec) [ -11232.7650] [ 2030] [depth= 5] . ( 71 sec) [ -11224.8494] [ 2030] [depth= 1] . ( 71 sec) [ -11173.5631] [ 2023] [depth= 3] . ( 71 sec) [ -11100.1679] [ 1996] [depth= 10] . ( 72 sec) [ -11093.7156] [ 1995] [depth= 1] . ( 72 sec) [ -11093.2969] [ 1995] [depth= 2] . ( 73 sec) [ -11062.0335] [ 2001] [depth= 1] . ( 75 sec) [ -10730.3402] [Branch lengths ] . ( 78 sec) [ -10625.5256] [GTR parameters ] . ( 79 sec) [ -10527.7179] [Alpha ][ 0.258404] . ( 79 sec) [ -10517.2758] [ 1997] [depth= 1] . ( 79 sec) [ -10511.4901] [ 1996] [depth= 3] . ( 80 sec) [ -10511.0005] [ 1996] [depth= 1] . ( 80 sec) [ -10508.4726] [ 1996] [depth= 3] . ( 80 sec) [ -10506.9977] [ 1996] [depth= 2] . ( 80 sec) [ -10502.3466] [ 1994] [depth= 3] . ( 82 sec) [ -10502.2768] [ 1994] [depth= 1] . ( 83 sec) [ -10502.2654] [ 1994] [depth= 1] . ( 83 sec) [ -10496.9210] [ 1991] [depth= 3] . ( 84 sec) [ -10496.6416] [ 1990] [depth= 7] . ( 86 sec) [ -10491.8156] [ 1989] [depth= 10] . ( 87 sec) [ -10491.6604] [ 1989] [depth= 4] . ( 87 sec) [ -10491.6492] [ 1989] [depth= 3] . ( 91 sec) [ -10490.8586] [ 1989] [depth= 1] . ( 91 sec) [ -10479.6085] [ 1987] [depth= 1] . ( 92 sec) [ -10478.9503] [ 1987] [depth= 1] . ( 92 sec) [ -10467.5769] [ 1985] [depth= 13] . ( 92 sec) [ -10467.5105] [ 1985] [depth= 1] . ( 95 sec) [ -10467.4641] [ 1985] [depth= 4] . ( 95 sec) [ -10464.2426] [ 1984] [depth= 4] . ( 95 sec) [ -10464.2259] [ 1984] [depth= 4] . ( 96 sec) [ -10462.7913] [ 1984] [depth= 3] . ( 96 sec) [ -10461.6649] [ 1982] [depth= 1] . ( 97 sec) [ -10461.4705] [ 1982] [depth= 1] . ( 97 sec) [ -10461.4093] [ 1982] [depth= 2] . ( 99 sec) [ -10461.0745] [ 1983] [depth= 1] . ( 101 sec) [ -10457.1715] [ 1982] [depth= 4] . ( 103 sec) [ -10456.6234] [ 1987] [depth= 8] . ( 103 sec) [ -10446.9683] [ 1978] [depth= 2] . ( 103 sec) [ -10446.2519] [ 1978] [depth= 1] . ( 104 sec) [ -10407.6111] [ 1950] [depth= 1] . ( 104 sec) [ -10398.4106] [ 1945] [depth= 18] . ( 105 sec) [ -10398.3858] [ 1945] [depth= 3] . ( 105 sec) [ -10397.7657] [ 1945] [depth= 1] . ( 105 sec) [ -10394.2448] [ 1943] [depth= 2] . ( 107 sec) [ -10374.0783] [ 1939] [depth= 7] . ( 108 sec) [ -10373.9663] [ 1938] [depth= 1] . ( 108 sec) [ -10366.6757] [ 1938] [depth= 9] . ( 108 sec) [ -10366.1686] [ 1940] [depth= 2] . ( 108 sec) [ -10245.9343] [ 1907] [depth= 1] . ( 109 sec) [ -10135.5217] [ 1851] [depth= 18] . ( 109 sec) [ -10108.3621] [ 1849] [depth= 5] . ( 110 sec) [ -10108.3428] [ 1849] [depth= 3] . ( 110 sec) [ -10107.9760] [ 1849] [depth= 2] . ( 110 sec) [ -10107.9294] [ 1849] [depth= 3] . ( 110 sec) [ -10107.8550] [ 1849] [depth= 2] . ( 111 sec) [ -10098.7086] [ 1833] [depth= 8] . ( 112 sec) [ -10098.5640] [ 1838] [depth= 4] . ( 112 sec) [ -10098.5394] [ 1838] [depth= 1] . ( 113 sec) [ -10097.9665] [ 1843] [depth= 2] . ( 113 sec) [ -10097.3072] [ 1843] [depth= 1] . ( 113 sec) [ -10094.7770] [ 1843] [depth= 5] . ( 114 sec) [ -10094.7462] [ 1843] [depth= 2] . ( 115 sec) [ -10094.6817] [ 1843] [depth= 2] . ( 115 sec) [ -10094.6389] [ 1843] [depth= 3] . ( 115 sec) [ -10093.7105] [ 1842] [depth= 2] . ( 117 sec) [ -10090.4958] [ 1842] [depth= 6] . ( 118 sec) [ -10090.4823] [ 1842] [depth= 5] . ( 118 sec) [ -10088.3393] [ 1842] [depth= 6] . ( 118 sec) [ -10084.2219] [ 1842] [depth= 2] . ( 121 sec) [ -10080.3663] [ 1842] [depth= 2] . ( 121 sec) [ -10076.6389] [ 1842] [depth= 1] . ( 121 sec) [ -10072.6210] [ 1842] [depth= 4] . ( 122 sec) [ -10072.1976] [ 1842] [depth= 2] . ( 122 sec) [ -10072.0766] [ 1842] [depth= 5] . ( 123 sec) [ -10071.8402] [ 1842] [depth= 1] . ( 123 sec) [ -10071.7072] [ 1842] [depth= 2] . ( 123 sec) [ -10071.6697] [ 1842] [depth= 1] . ( 124 sec) [ -10071.6545] [ 1842] [depth= 5] . ( 126 sec) [ -10071.6249] [ 1842] [depth= 2] . ( 126 sec) [ -10071.5929] [ 1842] [depth= 3] . ( 126 sec) [ -10064.1562] [ 1842] [depth= 8] . ( 127 sec) [ -10063.9003] [ 1842] [depth= 3] . ( 127 sec) [ -10063.7488] [ 1842] [depth= 2] . ( 127 sec) [ -10063.6551] [ 1842] [depth= 2] . ( 127 sec) [ -10058.8186] [ 1842] [depth= 1] . ( 128 sec) [ -10058.6239] [ 1842] [depth= 2] . ( 130 sec) [ -10049.6251] [ 1841] [depth= 3] . ( 130 sec) [ -10049.4554] [ 1841] [depth= 1] . ( 130 sec) [ -10049.1289] [ 1841] [depth= 1] . ( 131 sec) [ -10039.3140] [ 1837] [depth= 8] . ( 131 sec) [ -10038.7633] [ 1837] [depth= 7] . ( 131 sec) [ -10032.1727] [ 1835] [depth= 1] . ( 132 sec) [ -10028.7597] [ 1828] [depth= 2] . ( 132 sec) [ -10011.5154] [ 1827] [depth= 3] . ( 133 sec) [ -10009.2519] [ 1826] [depth= 3] . ( 133 sec) [ -10009.1623] [ 1826] [depth= 3] . ( 134 sec) [ -9999.1292] [ 1820] [depth= 4] . ( 135 sec) [ -9993.5221] [ 1819] [depth= 3] . ( 136 sec) [ -9985.5404] [ 1821] [depth= 1] . ( 137 sec) [ -9985.5149] [ 1821] [depth= 2] . ( 137 sec) [ -9984.6064] [ 1821] [depth= 5] . ( 138 sec) [ -9980.7056] [ 1821] [depth= 1] . ( 138 sec) [ -9979.7142] [ 1821] [depth= 2] . ( 139 sec) [ -9970.7858] [ 1819] [depth= 6] . ( 140 sec) [ -9970.3352] [ 1819] [depth= 3] . ( 140 sec) [ -9968.5299] [ 1817] [depth= 1] . ( 140 sec) [ -9968.5080] [ 1817] [depth= 1] . ( 140 sec) [ -9964.8097] [ 1817] [depth= 1] . ( 143 sec) [ -9964.7988] [ 1817] [depth= 3] . ( 143 sec) [ -9964.5381] [ 1817] [depth= 2] . ( 144 sec) [ -9963.6554] [ 1817] [depth= 2] . ( 144 sec) [ -9963.6414] [ 1817] [depth= 2] . ( 144 sec) [ -9961.9710] [ 1817] [depth= 3] . ( 145 sec) [ -9960.7253] [ 1817] [depth= 4] . ( 145 sec) [ -9960.4278] [ 1817] [depth= 2] . ( 145 sec) [ -9960.2248] [ 1817] [depth= 1] . ( 146 sec) [ -9960.1951] [ 1817] [depth= 1] . ( 146 sec) [ -9960.1564] [ 1817] [depth= 4] . ( 146 sec) [ -9959.7536] [ 1817] [depth= 1] . ( 148 sec) [ -9959.3905] [ 1816] [depth= 1] . ( 152 sec) [ -9954.9456] [ 1810] [depth= 1] . ( 152 sec) [ -9933.2893] [ 1797] [depth= 6] . ( 153 sec) [ -9933.1134] [ 1797] [depth= 1] . ( 153 sec) [ -9916.5106] [ 1806] [depth= 1] . ( 154 sec) [ -9915.7027] [ 1808] [depth= 9] . ( 154 sec) [ -9915.6115] [ 1808] [depth= 1] . ( 155 sec) [ -9914.7913] [ 1809] [depth= 2] . ( 155 sec) [ -9914.7285] [ 1809] [depth= 1] . ( 156 sec) [ -9914.5511] [ 1809] [depth= 4] . ( 159 sec) [ -9914.5025] [ 1809] [depth= 2] . ( 160 sec) [ -9914.2517] [ 1809] [depth= 1] . ( 161 sec) [ -9914.1919] [ 1809] [depth= 2] . ( 162 sec) [ -9911.7786] [ 1809] [depth= 1] . ( 162 sec) [ -9911.7624] [ 1809] [depth= 2] . ( 162 sec) [ -9911.6887] [ 1809] [depth= 1] . ( 163 sec) [ -9911.2940] [ 1812] [depth= 1] . ( 163 sec) [ -9910.1115] [ 1812] [depth= 2] . ( 163 sec) [ -9905.0846] [ 1817] [depth= 1] . ( 164 sec) [ -9904.2121] [ 1820] [depth= 1] . ( 164 sec) [ -9898.4536] [ 1815] [depth= 1] . ( 167 sec) [ -9898.4373] [ 1815] [depth= 4] . ( 167 sec) [ -9898.4152] [ 1815] [depth= 4] . ( 168 sec) [ -9897.1521] [ 1820] [depth= 3] . ( 168 sec) [ -9897.0923] [ 1820] [depth= 1] . ( 169 sec) [ -9896.9125] [ 1819] [depth= 3] . ( 169 sec) [ -9896.7097] [ 1819] [depth= 5] . ( 170 sec) [ -9896.5983] [ 1819] [depth= 1] . ( 173 sec) [ -9896.5560] [ 1819] [depth= 1] . ( 175 sec) [ -9845.7581] [Branch lengths ] . ( 177 sec) [ -9844.7686] [GTR parameters ] . ( 178 sec) [ -9841.5033] [Alpha ][ 0.230429] . ( 179 sec) [ -9838.4509] [ 1819] [depth= 5] . ( 184 sec) [ -9838.4302] [ 1819] [depth= 1] . ( 184 sec) [ -9837.5340] [ 1817] [depth= 1] . ( 184 sec) [ -9837.4627] [ 1817] [depth= 2] . ( 193 sec) [ -9813.6030] [ 1807] [depth= 9] . ( 197 sec) [ -9813.4785] [ 1807] [depth= 1] . ( 197 sec) [ -9813.3029] [ 1807] [depth= 2] . ( 200 sec) [ -9813.1913] [ 1807] [depth= 1] . ( 200 sec) [ -9813.1624] [ 1807] [depth= 4] . ( 201 sec) [ -9812.9582] [ 1807] [depth= 4] . ( 201 sec) [ -9812.8700] [ 1807] [depth= 4] . ( 203 sec) [ -9812.7375] [ 1805] [depth= 2] . ( 205 sec) [ -9809.9650] [ 1803] [depth= 1] . ( 207 sec) [ -9809.9522] [ 1802] [depth= 2] . ( 209 sec) [ -9809.8753] [ 1802] [depth= 1] . ( 213 sec) [ -9809.6711] [ 1804] [depth= 1] . ( 220 sec) [ -9809.5089] [ 1804] [depth= 2] . ( 221 sec) [ -9800.6570] [ 1801] [depth= 1] . ( 222 sec) [ -9799.4171] [ 1801] [depth= 1] . ( 224 sec) [ -9797.7737] [ 1799] [depth= 1] . ( 227 sec) [ -9789.6634] [ 1790] [depth= 1] . ( 227 sec) [ -9789.1652] [ 1790] [depth= 1] . ( 230 sec) [ -9788.6971] [ 1790] [depth= 2] . ( 231 sec) [ -9788.6816] [ 1790] [depth= 2] . ( 231 sec) [ -9788.6581] [ 1790] [depth= 3] . ( 238 sec) [ -9788.6253] [ 1790] [depth= 3] . ( 240 sec) [ -9784.9451] [ 1790] [depth= 1] . ( 244 sec) [ -9778.6922] [ 1786] [depth= 2] . ( 244 sec) [ -9778.6769] [ 1786] [depth= 3] . ( 246 sec) [ -9778.6649] [ 1786] [depth= 1] . ( 246 sec) [ -9778.5438] [ 1784] [depth= 2] . ( 251 sec) [ -9778.4599] [ 1784] [depth= 1] . ( 252 sec) [ -9778.4498] [ 1784] [depth= 1] . ( 255 sec) [ -9778.3578] [ 1784] [depth= 1] . ( 262 sec) [ -9778.3302] [ 1784] [depth= 2] . ( 262 sec) [ -9778.2943] [ 1784] [depth= 1] . ( 264 sec) [ -9778.2637] [ 1784] [depth= 1] . ( 269 sec) [ -9778.2321] [ 1784] [depth= 2] . ( 272 sec) [ -9777.6772] [ 1784] [depth= 7] . ( 275 sec) [ -9776.8637] [ 1786] [depth= 1] . ( 277 sec) [ -9776.7571] [ 1786] [depth= 1] . ( 278 sec) [ -9776.7159] [ 1786] [depth= 3] . ( 284 sec) [ -9776.6839] [ 1786] [depth= 1] . ( 286 sec) [ -9776.6730] [ 1786] [depth= 3] . ( 287 sec) [ -9776.6355] [ 1786] [depth= 3] . ( 287 sec) [ -9776.6250] [ 1786] [depth= 3] . ( 287 sec) [ -9776.6116] [ 1786] [depth= 1] . ( 289 sec) [ -9776.4755] [ 1785] [depth= 1] . ( 293 sec) [ -9776.4376] [ 1785] [depth= 4] . ( 294 sec) [ -9776.3348] [ 1786] [depth= 1] . ( 296 sec) [ -9776.2864] [ 1787] [depth= 1] . ( 296 sec) [ -9776.1397] [ 1786] [depth= 1] . ( 300 sec) [ -9775.4311] [ 1784] [depth= 7] . ( 301 sec) [ -9775.2270] [ 1785] [depth= 2] . ( 304 sec) [ -9775.2142] [ 1785] [depth= 2] . ( 308 sec) [ -9775.1904] [ 1785] [depth= 3] . ( 311 sec) [ -9775.1725] [ 1785] [depth= 1] . ( 312 sec) [ -9774.6468] [ 1785] [depth= 1] . ( 312 sec) [ -9773.4359] [ 1782] [depth= 2] . ( 313 sec) [ -9772.9416] [ 1780] [depth= 1] . ( 318 sec) [ -9772.8778] [ 1780] [depth= 3] . ( 324 sec) [ -9772.8270] [ 1780] [depth= 2] . ( 329 sec) [ -9756.8079] [Branch lengths ] . ( 331 sec) [ -9756.4380] [GTR parameters ] . ( 332 sec) [ -9756.0797] [Alpha ][ 0.222051] . ( 338 sec) [ -9756.0430] [ 1780] [depth= 1] . ( 342 sec) [ -9755.9963] [ 1780] [depth= 3] . ( 355 sec) [ -9755.9636] [ 1780] [depth= 4] . ( 377 sec) [ -9754.8804] [ 1779] [depth= 2] . ( 379 sec) [ -9754.8678] [ 1779] [depth= 4] . ( 382 sec) [ -9754.8556] [ 1779] [depth= 2] . ( 382 sec) [ -9754.8337] [ 1779] [depth= 2] . ( 386 sec) [ -9754.7971] [ 1779] [depth= 3] . ( 389 sec) [ -9754.7860] [ 1779] [depth= 3] . ( 391 sec) [ -9754.2635] [ 1780] [depth= 4] . ( 391 sec) [ -9754.2293] [ 1780] [depth= 1] . ( 392 sec) [ -9753.8035] [ 1779] [depth= 1] . ( 408 sec) [ -9753.7825] [ 1779] [depth= 1] . ( 413 sec) [ -9753.7329] [ 1779] [depth= 1] . ( 434 sec) [ -9752.9133] [ 1779] [depth= 1] . ( 445 sec) [ -9752.8925] [ 1779] [depth= 2] . ( 456 sec) [ -9752.6479] [ 1780] [depth= 1] . ( 472 sec) [ -9752.1414] [ 1780] [depth= 1] . ( 472 sec) [ -9752.1255] [ 1780] [depth= 1] . ( 473 sec) [ -9752.0261] [ 1780] [depth= 1] . ( 478 sec) [ -9751.9804] [ 1780] [depth= 1] . ( 487 sec) [ -9741.3992] [Branch lengths ] . ( 490 sec) [ -9741.0585] [GTR parameters ] . ( 490 sec) [ -9740.9239] [Alpha ][ 0.217285] . ( 524 sec) [ -9740.8980] [ 1781] [depth= 3] . ( 537 sec) [ -9740.0213] [ 1782] [depth= 2] . ( 557 sec) [ -9740.0078] [ 1782] [depth= 2] . ( 587 sec) [ -9739.9634] [ 1782] [depth= 3] . ( 619 sec) [ -9739.6164] [ 1781] [depth= 1] . ( 643 sec) [ -9739.5944] [ 1781] [depth= 1] . ( 655 sec) [ -9734.8585] [Branch lengths ] . ( 657 sec) [ -9734.7450] [GTR parameters ] . ( 657 sec) [ -9734.2845] [Alpha ][ 0.208694] . ( 667 sec) [ -9734.2683] [ 1781] [depth= 3] . ( 714 sec) [ -9734.2437] [ 1781] [depth= 2] . ( 767 sec) [ -9733.9179] [ 1781] [depth= 15] . ( 779 sec) [ -9733.9045] [ 1781] [depth= 3] . ( 837 sec) [ -9731.0966] [Branch lengths ] . ( 838 sec) [ -9731.0644] [GTR parameters ] . ( 839 sec) [ -9730.7546] [Alpha ][ 0.201954] . ( 895 sec) [ -9730.7282] [ 1781] [depth= 2] . ( 902 sec) [ -9730.2854] [ 1780] [depth= 5] . ( 914 sec) [ -9729.7382] [ 1779] [depth= 1] . ( 915 sec) [ -9729.6240] [ 1779] [depth= 2] . ( 921 sec) [ -9729.4410] [ 1779] [depth= 2] . ( 922 sec) [ -9729.4057] [ 1779] [depth= 3] . ( 927 sec) [ -9729.3898] [ 1779] [depth= 2] . ( 932 sec) [ -9729.3683] [ 1779] [depth= 3] . ( 951 sec) [ -9729.3454] [ 1779] [depth= 3] . ( 974 sec) [ -9729.1210] [ 1780] [depth= 3] . ( 990 sec) [ -9729.1106] [ 1780] [depth= 3] . ( 998 sec) [ -9726.2889] [Branch lengths ] . ( 1000 sec) [ -9726.2279] [GTR parameters ] . ( 1000 sec) [ -9726.0215] [Alpha ][ 0.196569] . ( 1077 sec) [ -9725.8922] [ 1779] [depth= 3] . ( 1164 sec) [ -9725.8385] [ 1775] [depth= 1] . ( 1165 sec) [ -9722.9282] [Branch lengths ] . ( 1167 sec) [ -9722.8546] [GTR parameters ] . ( 1167 sec) [ -9722.6759] [Alpha ][ 0.191718] . ( 1341 sec) [ -9722.1353] [ 1776] [depth= 1] . ( 1346 sec) [ -9718.4360] [Branch lengths ] . ( 1347 sec) [ -9718.3331] [GTR parameters ] . ( 1348 sec) [ -9718.2437] [Alpha ][ 0.188365] . ( 1471 sec) [ -9718.1692] [ 1776] [depth= 12] . ( 1494 sec) [ -9717.6743] [ 1776] [depth= 4] . ( 1518 sec) [ -9716.5311] [Branch lengths ] . ( 1521 sec) [ -9716.4502] [GTR parameters ] . ( 1521 sec) [ -9716.4074] [Alpha ][ 0.186078] . ( 1537 sec) [ -9716.3923] [ 1776] [depth= 6] . ( 1599 sec) [ -9716.3813] [ 1776] [depth= 6] . ( 1695 sec) [ -9714.9107] [Branch lengths ] . ( 1696 sec) [ -9714.9007] [GTR parameters ] . ( 1696 sec) [ -9714.8566] [Alpha ][ 0.183770] . ( 1869 sec) [ -9714.5528] [Branch lengths ] . ( 1911 sec) [ -9714.4568] [ 1776] [depth= 2] . ( 1920 sec) [ -9714.4214] [ 1776] [depth= 1] . ( 2024 sec) [ -9714.4042] [ 1776] [depth= 1] . ( 2073 sec) [ -9714.2412] [Branch lengths ] . ( 2074 sec) [ -9714.2325] [GTR parameters ] . ( 2075 sec) [ -9714.2032] [Alpha ][ 0.181898] . ( 2075 sec) [ -9714.2032] [Topology ] . ( 2078 sec) [ -9714.1758] [Topology ] . ( 2081 sec) [ -9714.1638] [Topology ] . ( 2084 sec) [ -9714.1571] [Topology ] . ( 2088 sec) [ -9714.1530] [Topology ] . ( 2091 sec) [ -9714.1501] [Topology ] . ( 2094 sec) [ -9714.1481] [Topology ] . ( 2096 sec) [ -9714.1458] [GTR parameters ] . ( 2096 sec) [ -9714.1359] [Alpha ][ 0.180848] . ( 2096 sec) [ -9714.1359] [Topology ] . ( 2099 sec) [ -9714.1294] [Topology ] . ( 2102 sec) [ -9714.1255] [Topology ] . ( 2106 sec) [ -9714.1229] [Topology ] . ( 2109 sec) [ -9714.1209] [Topology ] . ( 2112 sec) [ -9714.1194] [Topology ] . ( 2115 sec) [ -9714.1181] [Topology ] . ( 2116 sec) [ -9714.1173] [GTR parameters ] . ( 2117 sec) [ -9714.1135] [Alpha ][ 0.180230] . ( 2117 sec) [ -9714.1135] [Topology ] . ( 2120 sec) [ -9714.1106] [Topology ] . ( 2123 sec) [ -9714.1087] [Topology ] . ( 2127 sec) [ -9714.1074] [Topology ] . ( 2130 sec) [ -9714.1067] [Topology ] . ( 2130 sec) [ -9714.1065] [GTR parameters ] . ( 2131 sec) [ -9714.1053] [Alpha ][ 0.179928] . ( 2131 sec) [ -9714.1053] [Topology ] . ( 2134 sec) [ -9714.1043] [Topology ] . ( 2135 sec) [ -9714.1043] [GTR parameters ] . ( 2135 sec) [ -9714.1042] [Alpha ][ 0.179671] . ( 2135 sec) [ -9714.1042] [Topology ] . ( 2139 sec) [ -9714.1031] [Topology ] . ( 2142 sec) [ -9714.1025] [Topology ] . ( 2143 sec) [ -9714.1025] [GTR parameters ] . ( 2143 sec) [ -9714.1025] [Alpha ][ 0.179671] . ( 2143 sec) [ -9714.1025] [Topology ] . ( 2146 sec) [ -9714.1022] [Topology ] . ( 2147 sec) [ -9714.1021] [GTR parameters ] . ( 2147 sec) [ -9714.1021] [Alpha ][ 0.179671] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -9714.102131. . Computing pairwise distances... . Building BioNJ tree... . Maximizing likelihood (using NNI moves)... . ( 5 sec) [ -11652.5156] [GTR parameters ] . ( 5 sec) [ -11452.6188] [Alpha ][ 0.500960] . ( 5 sec) [ -11452.6188] [Topology ] . ( 10 sec) [ -10365.2625] [Topology ] . ( 14 sec) [ -10031.8375] [Topology ] . ( 18 sec) [ -10010.6258] [Topology ] . ( 22 sec) [ -10000.4939] [Topology ] . ( 26 sec) [ -10078.8663] [Topology ] . Moving backward . ( 26 sec) [ -9998.0838] [Topology ] . ( 30 sec) [ -9978.6205] [Topology ] . ( 34 sec) [ -10082.5053] [Topology ] . Moving backward . ( 34 sec) [ -9970.6332] [Topology ] . ( 43 sec) [ -9952.5716] [GTR parameters ] . ( 43 sec) [ -9875.4361] [Alpha ][ 0.259706] . ( 43 sec) [ -9875.4361] [Topology ] . ( 47 sec) [ -9932.2170] [Topology ] . Moving backward . ( 47 sec) [ -9874.3108] [Topology ] . ( 51 sec) [ -9863.8641] [Topology ] . ( 55 sec) [ -9930.4278] [Topology ] . Moving backward . ( 55 sec) [ -9853.3092] [Topology ] . ( 59 sec) [ -9848.7910] [Topology ] . ( 62 sec) [ -9895.9855] [Topology ] . Moving backward . ( 63 sec) [ -9846.4683] [Topology ] . ( 66 sec) [ -9842.2614] [Topology ] . ( 73 sec) [ -9850.4471] [GTR parameters ] . ( 74 sec) [ -9850.3708] [Alpha ][ 0.255177] . ( 74 sec) [ -9850.3708] [Topology ] . ( 78 sec) [ -9839.3721] [Topology ] . ( 81 sec) [ -9894.3038] [Topology ] . Moving backward . ( 81 sec) [ -9832.5169] [Topology ] . ( 85 sec) [ -9828.9871] [Topology ] . ( 88 sec) [ -9848.9864] [Topology ] . Moving backward . ( 88 sec) [ -9828.5015] [Topology ] . ( 92 sec) [ -9828.1237] [Topology ] . ( 95 sec) [ -9853.2397] [Topology ] . Moving backward . ( 96 sec) [ -9823.8735] [Topology ] . Checking for NNIs, optimizing five branches... . ( 128 sec) [ -9822.3410] [Topology ] . ( 131 sec) [ -9822.1675] [GTR parameters ] . ( 131 sec) [ -9819.7744] [Alpha ][ 0.231992] . ( 131 sec) [ -9819.7744] [Topology ] . ( 134 sec) [ -9824.8512] [Topology ] . Moving backward . ( 135 sec) [ -9817.6700] [Topology ] . ( 138 sec) [ -9817.3750] [Topology ] . ( 141 sec) [ -9824.1131] [Topology ] . Moving backward . ( 142 sec) [ -9816.1565] [Topology ] . ( 145 sec) [ -9816.4149] [Topology ] . Moving backward . ( 146 sec) [ -9814.5736] [Topology ] . ( 149 sec) [ -9814.0199] [Topology ] . ( 152 sec) [ -9813.6959] [Topology ] . Checking for NNIs, optimizing five branches... . ( 182 sec) [ -9812.9284] [Topology ] . ( 185 sec) [ -9812.4685] [GTR parameters ] . ( 186 sec) [ -9812.0924] [Alpha ][ 0.223570] . ( 186 sec) [ -9812.0924] [Topology ] . ( 189 sec) [ -9811.0097] [Topology ] . ( 193 sec) [ -9810.6491] [Topology ] . ( 196 sec) [ -9810.6447] [Topology ] . ( 199 sec) [ -9814.1610] [Topology ] . Moving backward . ( 200 sec) [ -9809.4865] [Topology ] . ( 203 sec) [ -9809.4931] [Topology ] . Moving backward . ( 203 sec) [ -9808.5732] [Topology ] . ( 207 sec) [ -9808.0614] [Topology ] . Checking for NNIs, optimizing five branches... . ( 233 sec) [ -9807.9271] [Topology ] . ( 237 sec) [ -9807.8015] [GTR parameters ] . ( 237 sec) [ -9807.3598] [Alpha ][ 0.214946] . ( 237 sec) [ -9807.3598] [Topology ] . ( 240 sec) [ -9806.6399] [Topology ] . ( 244 sec) [ -9806.2793] [Topology ] . ( 247 sec) [ -9806.1576] [Topology ] . ( 250 sec) [ -9807.5394] [Topology ] . Moving backward . ( 251 sec) [ -9805.4493] [Topology ] . ( 254 sec) [ -9805.3474] [Topology ] . ( 257 sec) [ -9805.9623] [Topology ] . Checking for NNIs, optimizing five branches... . ( 284 sec) [ -9805.1128] [Topology ] . ( 287 sec) [ -9805.0099] [GTR parameters ] . ( 288 sec) [ -9804.6287] [Alpha ][ 0.207349] . ( 288 sec) [ -9804.6287] [Topology ] . ( 291 sec) [ -9802.2333] [Topology ] . ( 294 sec) [ -9802.9608] [Topology ] . Moving backward . ( 295 sec) [ -9801.3804] [Topology ] . ( 298 sec) [ -9800.7142] [Topology ] . ( 301 sec) [ -9800.3920] [Topology ] . ( 305 sec) [ -9800.4421] [Topology ] . Moving backward . ( 305 sec) [ -9799.3829] [Topology ] . ( 309 sec) [ -9799.1803] [Topology ] . ( 312 sec) [ -9799.0856] [Topology ] . Checking for NNIs, optimizing five branches... . ( 338 sec) [ -9799.0828] [Topology ] . ( 341 sec) [ -9799.0160] [GTR parameters ] . ( 342 sec) [ -9798.6946] [Alpha ][ 0.200634] . ( 342 sec) [ -9798.6946] [Topology ] . ( 345 sec) [ -9798.4749] [Topology ] . ( 349 sec) [ -9798.3588] [Topology ] . ( 352 sec) [ -9798.2947] [Topology ] . ( 355 sec) [ -9798.2596] [Topology ] . ( 359 sec) [ -9798.2430] [Topology ] . ( 362 sec) [ -9798.2384] [Topology ] . Checking for NNIs, optimizing five branches... . ( 388 sec) [ -9798.2256] [Topology ] . ( 391 sec) [ -9798.1963] [GTR parameters ] . ( 391 sec) [ -9798.0724] [Alpha ][ 0.196577] . ( 392 sec) [ -9798.0724] [Topology ] . ( 395 sec) [ -9798.0224] [Topology ] . ( 398 sec) [ -9798.0187] [Topology ] . ( 401 sec) [ -9798.0873] [Topology ] . Moving backward . ( 402 sec) [ -9797.9429] [Topology ] . ( 405 sec) [ -9797.9340] [Topology ] . ( 408 sec) [ -9797.9378] [Topology ] . Moving backward . ( 409 sec) [ -9797.9210] [Topology ] . ( 412 sec) [ -9797.9162] [Topology ] . Checking for NNIs, optimizing five branches... . ( 438 sec) [ -9797.9151] [Topology ] . ( 441 sec) [ -9797.9040] [GTR parameters ] . ( 441 sec) [ -9797.8693] [Alpha ][ 0.194506] . ( 441 sec) [ -9797.8693] [Topology ] . ( 445 sec) [ -9797.8490] [Topology ] . ( 448 sec) [ -9797.8406] [Topology ] . ( 451 sec) [ -9797.8393] [Topology ] . ( 455 sec) [ -9797.8428] [Topology ] . Moving backward . ( 455 sec) [ -9797.8300] [Topology ] . ( 458 sec) [ -9797.8281] [Topology ] . ( 461 sec) [ -9797.8274] [Topology ] . Checking for NNIs, optimizing five branches... . ( 488 sec) [ -9797.8245] [GTR parameters ] . ( 489 sec) [ -9797.8118] [Alpha ][ 0.193307] . ( 489 sec) [ -9797.8118] [Topology ] . ( 492 sec) [ -9797.8064] [Topology ] . ( 495 sec) [ -9797.8047] [Topology ] . ( 499 sec) [ -9797.8056] [Topology ] . Checking for NNIs, optimizing five branches... . ( 525 sec) [ -9797.8044] [GTR parameters ] . ( 525 sec) [ -9797.8022] [Alpha ][ 0.192686] . ( 525 sec) [ -9797.8022] [Topology ] . ( 529 sec) [ -9797.8030] [Topology ] . Checking for NNIs, optimizing five branches... . ( 555 sec) [ -9797.8029] [GTR parameters ] . ( 556 sec) [ -9797.8027] [Alpha ][ 0.192434] . ( 556 sec) [ -9797.8027] [Topology ] . ( 559 sec) [ -9797.8092] [Topology ] . Moving backward . ( 559 sec) [ -9797.7933] [Topology ] . ( 563 sec) [ -9797.7920] [Topology ] . ( 566 sec) [ -9797.7919] [Topology ] . Checking for NNIs, optimizing five branches... . ( 592 sec) [ -9797.7913] [GTR parameters ] . ( 592 sec) [ -9797.7912] [Alpha ][ 0.192235] . ( 593 sec) [ -9797.7912] [Topology ] . ( 596 sec) [ -9797.7912] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 651 sec) [ -11652.5156] [GTR parameters ] . ( 652 sec) [ -11452.6188] [Alpha ][ 0.500960] . ( 653 sec) [ -11452.0929] [ 1804] [depth= 1] . ( 654 sec) [ -11450.2527] [ 1804] [depth= 1] . ( 654 sec) [ -11449.6563] [ 1804] [depth= 1] . ( 654 sec) [ -11449.6408] [ 1804] [depth= 1] . ( 655 sec) [ -11449.1939] [ 1804] [depth= 2] . ( 657 sec) [ -11448.9557] [ 1804] [depth= 2] . ( 657 sec) [ -11444.7108] [ 1803] [depth= 2] . ( 657 sec) [ -11443.9941] [ 1803] [depth= 1] . ( 658 sec) [ -11443.6221] [ 1803] [depth= 1] . ( 658 sec) [ -11442.0931] [ 1803] [depth= 3] . ( 662 sec) [ -11439.9495] [ 1818] [depth= 1] . ( 662 sec) [ -11431.1045] [ 1815] [depth= 1] . ( 667 sec) [ -11430.6152] [ 1815] [depth= 1] . ( 667 sec) [ -11430.4390] [ 1815] [depth= 1] . ( 668 sec) [ -11430.2673] [ 1815] [depth= 1] . ( 669 sec) [ -11428.8043] [ 1818] [depth= 1] . ( 669 sec) [ -11425.3632] [ 1815] [depth= 1] . ( 670 sec) [ -11405.3575] [ 1814] [depth= 3] . ( 670 sec) [ -11379.2932] [ 1815] [depth= 1] . ( 671 sec) [ -11376.8116] [ 1814] [depth= 1] . ( 671 sec) [ -11260.5507] [ 1815] [depth= 1] . ( 671 sec) [ -11211.7209] [ 1818] [depth= 5] . ( 672 sec) [ -10932.8505] [ 1816] [depth= 5] . ( 672 sec) [ -10928.3357] [ 1818] [depth= 1] . ( 673 sec) [ -10928.0609] [ 1817] [depth= 1] . ( 673 sec) [ -10862.3752] [ 1822] [depth= 1] . ( 674 sec) [ -10682.0570] [ 1817] [depth= 1] . ( 674 sec) [ -10506.1219] [ 1822] [depth= 1] . ( 674 sec) [ -10506.0163] [ 1824] [depth= 1] . ( 675 sec) [ -10486.0299] [ 1811] [depth= 16] . ( 675 sec) [ -10485.6073] [ 1811] [depth= 1] . ( 675 sec) [ -10481.9317] [ 1811] [depth= 2] . ( 675 sec) [ -10480.5685] [ 1811] [depth= 2] . ( 675 sec) [ -10480.5001] [ 1811] [depth= 2] . ( 676 sec) [ -10479.9902] [ 1811] [depth= 2] . ( 676 sec) [ -10478.6706] [ 1812] [depth= 5] . ( 678 sec) [ -10345.4997] [ 1812] [depth= 1] . ( 678 sec) [ -10344.8115] [ 1812] [depth= 1] . ( 678 sec) [ -10343.9147] [ 1812] [depth= 1] . ( 678 sec) [ -10343.6896] [ 1812] [depth= 1] . ( 679 sec) [ -10342.7771] [ 1812] [depth= 1] . ( 679 sec) [ -10342.7585] [ 1812] [depth= 3] . ( 679 sec) [ -10342.6410] [ 1812] [depth= 1] . ( 679 sec) [ -10341.2968] [ 1812] [depth= 2] . ( 680 sec) [ -10341.2713] [ 1812] [depth= 1] . ( 680 sec) [ -10341.2601] [ 1812] [depth= 3] . ( 680 sec) [ -10341.0839] [ 1812] [depth= 1] . ( 681 sec) [ -10339.4682] [ 1812] [depth= 1] . ( 681 sec) [ -10339.2280] [ 1812] [depth= 1] . ( 681 sec) [ -10330.8042] [ 1813] [depth= 1] . ( 681 sec) [ -10330.4004] [ 1813] [depth= 2] . ( 682 sec) [ -10306.4524] [ 1813] [depth= 8] . ( 682 sec) [ -10305.0688] [ 1813] [depth= 3] . ( 682 sec) [ -10305.0362] [ 1813] [depth= 2] . ( 683 sec) [ -10290.7678] [ 1818] [depth= 4] . ( 683 sec) [ -10275.7196] [ 1815] [depth= 4] . ( 684 sec) [ -10275.6396] [ 1815] [depth= 1] . ( 684 sec) [ -10275.6051] [ 1815] [depth= 1] . ( 684 sec) [ -10275.5351] [ 1815] [depth= 2] . ( 684 sec) [ -10274.7962] [ 1815] [depth= 3] . ( 685 sec) [ -10274.7424] [ 1815] [depth= 1] . ( 685 sec) [ -10274.7241] [ 1815] [depth= 1] . ( 685 sec) [ -10269.5965] [ 1814] [depth= 1] . ( 685 sec) [ -10269.5806] [ 1814] [depth= 2] . ( 686 sec) [ -10269.5653] [ 1814] [depth= 1] . ( 687 sec) [ -10269.5203] [ 1814] [depth= 2] . ( 688 sec) [ -10267.5626] [ 1814] [depth= 1] . ( 689 sec) [ -10267.3426] [ 1814] [depth= 3] . ( 689 sec) [ -10260.5144] [ 1814] [depth= 1] . ( 690 sec) [ -10259.3318] [ 1814] [depth= 7] . ( 690 sec) [ -10259.3152] [ 1814] [depth= 1] . ( 691 sec) [ -10258.6743] [ 1814] [depth= 1] . ( 692 sec) [ -10258.5015] [ 1814] [depth= 2] . ( 692 sec) [ -10258.4641] [ 1814] [depth= 2] . ( 693 sec) [ -10257.5676] [ 1814] [depth= 2] . ( 693 sec) [ -10257.4190] [ 1814] [depth= 3] . ( 694 sec) [ -10232.7877] [ 1819] [depth= 5] . ( 695 sec) [ -10228.8684] [ 1819] [depth= 2] . ( 695 sec) [ -10228.2124] [ 1819] [depth= 1] . ( 696 sec) [ -10227.3146] [ 1819] [depth= 3] . ( 696 sec) [ -10226.9743] [ 1819] [depth= 3] . ( 697 sec) [ -10226.4122] [ 1819] [depth= 3] . ( 697 sec) [ -10226.3557] [ 1819] [depth= 1] . ( 697 sec) [ -10226.3196] [ 1819] [depth= 2] . ( 698 sec) [ -10222.9446] [ 1821] [depth= 1] . ( 700 sec) [ -10221.1931] [ 1817] [depth= 2] . ( 701 sec) [ -10220.1763] [ 1817] [depth= 2] . ( 702 sec) [ -10218.8665] [ 1812] [depth= 1] . ( 704 sec) [ -10218.5340] [ 1812] [depth= 1] . ( 706 sec) [ -10218.1278] [ 1812] [depth= 1] . ( 706 sec) [ -10217.9908] [ 1812] [depth= 1] . ( 707 sec) [ -10217.9197] [ 1812] [depth= 1] . ( 707 sec) [ -10217.8218] [ 1812] [depth= 2] . ( 710 sec) [ -10216.2169] [ 1812] [depth= 4] . ( 711 sec) [ -10215.6185] [ 1812] [depth= 4] . ( 711 sec) [ -10215.0826] [ 1812] [depth= 1] . ( 711 sec) [ -10213.9255] [ 1812] [depth= 3] . ( 715 sec) [ -10210.9828] [ 1812] [depth= 4] . ( 716 sec) [ -10209.1256] [ 1811] [depth= 2] . ( 716 sec) [ -10209.0368] [ 1813] [depth= 1] . ( 716 sec) [ -10203.1643] [ 1812] [depth= 3] . ( 717 sec) [ -10202.7814] [ 1811] [depth= 2] . ( 717 sec) [ -10202.3141] [ 1809] [depth= 1] . ( 718 sec) [ -10201.0728] [ 1809] [depth= 1] . ( 718 sec) [ -10196.3600] [ 1811] [depth= 1] . ( 718 sec) [ -10193.7246] [ 1809] [depth= 1] . ( 718 sec) [ -10180.4249] [ 1809] [depth= 2] . ( 719 sec) [ -10178.5417] [ 1804] [depth= 2] . ( 719 sec) [ -10175.1988] [ 1804] [depth= 1] . ( 719 sec) [ -10161.7998] [ 1803] [depth= 2] . ( 719 sec) [ -10155.9310] [ 1802] [depth= 2] . ( 720 sec) [ -10155.8624] [ 1802] [depth= 1] . ( 721 sec) [ -10148.1001] [ 1806] [depth= 6] . ( 721 sec) [ -10147.9870] [ 1806] [depth= 1] . ( 721 sec) [ -10147.4608] [ 1806] [depth= 3] . ( 722 sec) [ -10127.8867] [ 1807] [depth= 2] . ( 722 sec) [ -10126.4583] [ 1807] [depth= 2] . ( 722 sec) [ -10120.9671] [ 1804] [depth= 3] . ( 723 sec) [ -10116.5433] [ 1803] [depth= 8] . ( 723 sec) [ -10113.3981] [ 1803] [depth= 2] . ( 723 sec) [ -10109.3047] [ 1802] [depth= 3] . ( 724 sec) [ -10108.0795] [ 1802] [depth= 1] . ( 726 sec) [ -10107.9814] [ 1802] [depth= 1] . ( 726 sec) [ -10107.5590] [ 1802] [depth= 1] . ( 726 sec) [ -10106.8627] [ 1802] [depth= 1] . ( 727 sec) [ -10106.7735] [ 1802] [depth= 1] . ( 727 sec) [ -10105.8981] [ 1801] [depth= 6] . ( 737 sec) [ -10105.7823] [ 1801] [depth= 2] . ( 738 sec) [ -10105.0299] [ 1801] [depth= 1] . ( 739 sec) [ -10104.8888] [ 1801] [depth= 1] . ( 742 sec) [ -10104.0647] [ 1801] [depth= 1] . ( 742 sec) [ -10104.0379] [ 1801] [depth= 2] . ( 742 sec) [ -10103.8436] [ 1801] [depth= 4] . ( 742 sec) [ -10103.8001] [ 1801] [depth= 2] . ( 743 sec) [ -10103.4647] [ 1801] [depth= 3] . ( 745 sec) [ -10103.3643] [ 1801] [depth= 2] . ( 746 sec) [ -10103.2997] [ 1801] [depth= 2] . ( 746 sec) [ -10102.5848] [ 1801] [depth= 3] . ( 748 sec) [ -10101.9438] [ 1801] [depth= 1] . ( 748 sec) [ -10101.8763] [ 1801] [depth= 4] . ( 749 sec) [ -10101.8585] [ 1801] [depth= 1] . ( 749 sec) [ -10101.8157] [ 1801] [depth= 1] . ( 749 sec) [ -10101.7736] [ 1801] [depth= 1] . ( 749 sec) [ -10101.7615] [ 1801] [depth= 3] . ( 764 sec) [ -9953.1794] [Branch lengths ] . ( 769 sec) [ -9941.6140] [GTR parameters ] . ( 769 sec) [ -9881.3484] [Alpha ][ 0.271001] . ( 771 sec) [ -9881.2692] [ 1801] [depth= 1] . ( 771 sec) [ -9881.1741] [ 1801] [depth= 1] . ( 771 sec) [ -9881.1510] [ 1801] [depth= 1] . ( 772 sec) [ -9881.0101] [ 1801] [depth= 3] . ( 772 sec) [ -9880.9907] [ 1801] [depth= 3] . ( 776 sec) [ -9880.9311] [ 1801] [depth= 1] . ( 776 sec) [ -9880.8473] [ 1801] [depth= 1] . ( 778 sec) [ -9878.1579] [ 1788] [depth= 1] . ( 779 sec) [ -9873.2427] [ 1801] [depth= 1] . ( 783 sec) [ -9872.8832] [ 1801] [depth= 1] . ( 783 sec) [ -9872.6139] [ 1801] [depth= 1] . ( 786 sec) [ -9872.4297] [ 1801] [depth= 1] . ( 788 sec) [ -9872.4004] [ 1802] [depth= 2] . ( 788 sec) [ -9862.4614] [ 1799] [depth= 5] . ( 789 sec) [ -9861.9306] [ 1797] [depth= 1] . ( 789 sec) [ -9861.8916] [ 1797] [depth= 1] . ( 789 sec) [ -9861.7102] [ 1797] [depth= 4] . ( 790 sec) [ -9861.6852] [ 1797] [depth= 1] . ( 790 sec) [ -9861.6545] [ 1797] [depth= 3] . ( 794 sec) [ -9860.3191] [ 1792] [depth= 2] . ( 794 sec) [ -9860.2976] [ 1792] [depth= 1] . ( 795 sec) [ -9860.1987] [ 1792] [depth= 2] . ( 798 sec) [ -9860.1795] [ 1792] [depth= 1] . ( 799 sec) [ -9860.1642] [ 1792] [depth= 2] . ( 800 sec) [ -9860.1193] [ 1792] [depth= 1] . ( 805 sec) [ -9859.9091] [ 1792] [depth= 1] . ( 809 sec) [ -9859.8069] [ 1792] [depth= 3] . ( 812 sec) [ -9859.2012] [ 1792] [depth= 1] . ( 815 sec) [ -9847.2649] [ 1790] [depth= 5] . ( 815 sec) [ -9846.9679] [ 1790] [depth= 1] . ( 815 sec) [ -9844.7968] [ 1790] [depth= 3] . ( 816 sec) [ -9844.5218] [ 1790] [depth= 3] . ( 818 sec) [ -9844.4750] [ 1790] [depth= 3] . ( 818 sec) [ -9844.2455] [ 1790] [depth= 3] . ( 819 sec) [ -9844.2291] [ 1790] [depth= 1] . ( 821 sec) [ -9843.6004] [ 1791] [depth= 2] . ( 822 sec) [ -9842.2061] [ 1795] [depth= 1] . ( 823 sec) [ -9841.3029] [ 1794] [depth= 1] . ( 824 sec) [ -9836.1393] [ 1792] [depth= 1] . ( 828 sec) [ -9836.0983] [ 1792] [depth= 2] . ( 828 sec) [ -9835.7542] [ 1792] [depth= 4] . ( 829 sec) [ -9835.6089] [ 1792] [depth= 1] . ( 832 sec) [ -9835.5737] [ 1792] [depth= 2] . ( 836 sec) [ -9835.5561] [ 1792] [depth= 3] . ( 847 sec) [ -9835.5391] [ 1792] [depth= 5] . ( 852 sec) [ -9834.6284] [ 1791] [depth= 7] . ( 855 sec) [ -9834.5055] [ 1791] [depth= 1] . ( 855 sec) [ -9834.4278] [ 1791] [depth= 1] . ( 855 sec) [ -9834.3327] [ 1791] [depth= 5] . ( 859 sec) [ -9834.2188] [ 1791] [depth= 2] . ( 864 sec) [ -9834.2047] [ 1791] [depth= 4] . ( 864 sec) [ -9834.1833] [ 1791] [depth= 1] . ( 872 sec) [ -9834.1377] [ 1791] [depth= 2] . ( 874 sec) [ -9834.1029] [ 1791] [depth= 1] . ( 874 sec) [ -9834.0909] [ 1791] [depth= 2] . ( 876 sec) [ -9834.0328] [ 1791] [depth= 1] . ( 877 sec) [ -9833.9698] [ 1791] [depth= 3] . ( 877 sec) [ -9833.6468] [ 1791] [depth= 2] . ( 877 sec) [ -9833.6321] [ 1791] [depth= 3] . ( 878 sec) [ -9833.5122] [ 1791] [depth= 2] . ( 878 sec) [ -9833.4785] [ 1791] [depth= 3] . ( 884 sec) [ -9833.4450] [ 1791] [depth= 5] . ( 886 sec) [ -9833.2978] [ 1791] [depth= 5] . ( 886 sec) [ -9833.2720] [ 1791] [depth= 2] . ( 903 sec) [ -9803.7671] [Branch lengths ] . ( 907 sec) [ -9800.3513] [GTR parameters ] . ( 908 sec) [ -9799.7017] [Alpha ][ 0.256544] . ( 909 sec) [ -9799.6585] [ 1791] [depth= 3] . ( 909 sec) [ -9799.6427] [ 1791] [depth= 1] . ( 911 sec) [ -9799.6110] [ 1791] [depth= 2] . ( 913 sec) [ -9799.5992] [ 1791] [depth= 2] . ( 917 sec) [ -9799.0196] [ 1775] [depth= 1] . ( 925 sec) [ -9798.7283] [ 1775] [depth= 2] . ( 925 sec) [ -9798.5514] [ 1774] [depth= 1] . ( 932 sec) [ -9798.0360] [ 1776] [depth= 1] . ( 938 sec) [ -9795.6130] [ 1781] [depth= 2] . ( 938 sec) [ -9795.5867] [ 1781] [depth= 3] . ( 938 sec) [ -9795.5644] [ 1781] [depth= 3] . ( 939 sec) [ -9795.4940] [ 1781] [depth= 1] . ( 940 sec) [ -9795.4829] [ 1781] [depth= 1] . ( 941 sec) [ -9795.1437] [ 1781] [depth= 1] . ( 942 sec) [ -9794.6439] [ 1781] [depth= 2] . ( 960 sec) [ -9794.6310] [ 1781] [depth= 3] . ( 961 sec) [ -9794.6001] [ 1776] [depth= 1] . ( 963 sec) [ -9794.5703] [ 1776] [depth= 3] . ( 983 sec) [ -9794.5218] [ 1776] [depth= 1] . ( 1008 sec) [ -9793.3703] [ 1776] [depth= 1] . ( 1023 sec) [ -9793.3389] [ 1776] [depth= 1] . ( 1028 sec) [ -9793.3157] [ 1776] [depth= 2] . ( 1041 sec) [ -9793.2296] [ 1776] [depth= 4] . ( 1074 sec) [ -9772.2670] [Branch lengths ] . ( 1078 sec) [ -9771.3043] [GTR parameters ] . ( 1078 sec) [ -9770.5418] [Alpha ][ 0.242539] . ( 1080 sec) [ -9770.5201] [ 1776] [depth= 3] . ( 1080 sec) [ -9770.4923] [ 1776] [depth= 1] . ( 1080 sec) [ -9770.4729] [ 1776] [depth= 1] . ( 1080 sec) [ -9770.4143] [ 1776] [depth= 1] . ( 1097 sec) [ -9770.3980] [ 1776] [depth= 1] . ( 1099 sec) [ -9770.0808] [ 1775] [depth= 1] . ( 1100 sec) [ -9769.1841] [ 1772] [depth= 1] . ( 1104 sec) [ -9769.1155] [ 1772] [depth= 2] . ( 1112 sec) [ -9769.0782] [ 1772] [depth= 1] . ( 1114 sec) [ -9768.8525] [ 1772] [depth= 4] . ( 1123 sec) [ -9768.8053] [ 1772] [depth= 2] . ( 1131 sec) [ -9768.6990] [ 1772] [depth= 1] . ( 1136 sec) [ -9768.4987] [ 1772] [depth= 2] . ( 1137 sec) [ -9768.4545] [ 1772] [depth= 2] . ( 1153 sec) [ -9768.3774] [ 1772] [depth= 3] . ( 1154 sec) [ -9768.3491] [ 1772] [depth= 2] . ( 1159 sec) [ -9767.9802] [ 1772] [depth= 1] . ( 1245 sec) [ -9755.7875] [Branch lengths ] . ( 1248 sec) [ -9755.6310] [GTR parameters ] . ( 1248 sec) [ -9755.1136] [Alpha ][ 0.232004] . ( 1250 sec) [ -9755.0893] [ 1772] [depth= 2] . ( 1251 sec) [ -9755.0692] [ 1772] [depth= 1] . ( 1252 sec) [ -9755.0389] [ 1772] [depth= 2] . ( 1253 sec) [ -9755.0012] [ 1772] [depth= 2] . ( 1255 sec) [ -9754.9835] [ 1772] [depth= 1] . ( 1270 sec) [ -9754.9662] [ 1772] [depth= 1] . ( 1272 sec) [ -9754.6012] [ 1773] [depth= 1] . ( 1284 sec) [ -9754.5902] [ 1773] [depth= 3] . ( 1288 sec) [ -9754.5709] [ 1773] [depth= 1] . ( 1433 sec) [ -9745.7989] [Branch lengths ] . ( 1436 sec) [ -9745.6503] [GTR parameters ] . ( 1437 sec) [ -9745.0591] [Alpha ][ 0.221561] . ( 1440 sec) [ -9745.0394] [ 1773] [depth= 2] . ( 1441 sec) [ -9744.9778] [ 1773] [depth= 3] . ( 1444 sec) [ -9744.8273] [ 1773] [depth= 1] . ( 1462 sec) [ -9744.7975] [ 1773] [depth= 1] . ( 1464 sec) [ -9744.7786] [ 1772] [depth= 1] . ( 1562 sec) [ -9744.7681] [ 1772] [depth= 2] . ( 1613 sec) [ -9738.4495] [Branch lengths ] . ( 1616 sec) [ -9738.3435] [GTR parameters ] . ( 1617 sec) [ -9737.7858] [Alpha ][ 0.211998] . ( 1619 sec) [ -9737.7480] [ 1772] [depth= 3] . ( 1622 sec) [ -9737.7294] [ 1772] [depth= 2] . ( 1635 sec) [ -9737.6210] [ 1773] [depth= 1] . ( 1639 sec) [ -9737.5690] [ 1774] [depth= 1] . ( 1653 sec) [ -9737.5563] [ 1775] [depth= 2] . ( 1654 sec) [ -9737.5456] [ 1775] [depth= 1] . ( 1787 sec) [ -9730.2258] [Branch lengths ] . ( 1791 sec) [ -9730.0041] [GTR parameters ] . ( 1791 sec) [ -9729.4555] [Alpha ][ 0.203008] . ( 1793 sec) [ -9729.4367] [ 1775] [depth= 2] . ( 1966 sec) [ -9725.8229] [Branch lengths ] . ( 1970 sec) [ -9725.7603] [GTR parameters ] . ( 1970 sec) [ -9725.4276] [Alpha ][ 0.196247] . ( 1973 sec) [ -9725.4155] [ 1775] [depth= 2] . ( 1998 sec) [ -9725.3902] [ 1775] [depth= 3] . ( 2144 sec) [ -9722.1618] [Branch lengths ] . ( 2146 sec) [ -9722.1311] [GTR parameters ] . ( 2146 sec) [ -9721.9653] [Alpha ][ 0.191592] . ( 2326 sec) [ -9721.3562] [Branch lengths ] . ( 2377 sec) [ -9721.2129] [ 1773] [depth= 1] . ( 2395 sec) [ -9721.0153] [ 1772] [depth= 2] . ( 2503 sec) [ -9721.0000] [ 1772] [depth= 1] . ( 2517 sec) [ -9720.6734] [Branch lengths ] . ( 2521 sec) [ -9720.6482] [GTR parameters ] . ( 2522 sec) [ -9720.5001] [Alpha ][ 0.187220] . ( 2522 sec) [ -9720.5001] [Topology ] . ( 2526 sec) [ -9720.3292] [Topology ] . ( 2530 sec) [ -9720.2420] [Topology ] . ( 2534 sec) [ -9720.1868] [Topology ] . ( 2538 sec) [ -9720.1510] [Topology ] . ( 2543 sec) [ -9720.1275] [Topology ] . ( 2547 sec) [ -9720.1120] [Topology ] . ( 2548 sec) [ -9720.0959] [GTR parameters ] . ( 2549 sec) [ -9719.9999] [Alpha ][ 0.183753] . ( 2549 sec) [ -9719.9999] [Topology ] . ( 2553 sec) [ -9719.9431] [Topology ] . ( 2557 sec) [ -9719.9109] [Topology ] . ( 2561 sec) [ -9719.8905] [Topology ] . ( 2565 sec) [ -9719.8773] [Topology ] . ( 2570 sec) [ -9719.8685] [Topology ] . ( 2575 sec) [ -9719.8626] [Topology ] . ( 2576 sec) [ -9719.8556] [GTR parameters ] . ( 2577 sec) [ -9719.8198] [Alpha ][ 0.181671] . ( 2577 sec) [ -9719.8198] [Topology ] . ( 2581 sec) [ -9719.7981] [Topology ] . ( 2585 sec) [ -9719.7856] [Topology ] . ( 2590 sec) [ -9719.7775] [Topology ] . ( 2594 sec) [ -9719.7727] [Topology ] . ( 2597 sec) [ -9719.7699] [Topology ] . ( 2601 sec) [ -9719.7681] [Topology ] . ( 2604 sec) [ -9719.7655] [GTR parameters ] . ( 2604 sec) [ -9719.7521] [Alpha ][ 0.180440] . ( 2604 sec) [ -9719.7521] [Topology ] . ( 2608 sec) [ -9719.7447] [Topology ] . ( 2612 sec) [ -9719.7407] [Topology ] . ( 2616 sec) [ -9719.7382] [Topology ] . ( 2620 sec) [ -9719.7367] [Topology ] . ( 2623 sec) [ -9719.7358] [Topology ] . ( 2624 sec) [ -9719.7350] [GTR parameters ] . ( 2624 sec) [ -9719.7303] [Alpha ][ 0.179746] . ( 2624 sec) [ -9719.7303] [Topology ] . ( 2628 sec) [ -9719.7274] [Topology ] . ( 2631 sec) [ -9719.7258] [Topology ] . ( 2634 sec) [ -9719.7248] [Topology ] . ( 2635 sec) [ -9719.7246] [GTR parameters ] . ( 2635 sec) [ -9719.7233] [Alpha ][ 0.179429] . ( 2635 sec) [ -9719.7233] [Topology ] . ( 2639 sec) [ -9719.7219] [Topology ] . ( 2642 sec) [ -9719.7210] [Topology ] . ( 2643 sec) [ -9719.7209] [GTR parameters ] . ( 2643 sec) [ -9719.7205] [Alpha ][ 0.179077] . ( 2643 sec) [ -9719.7205] [Topology ] . ( 2647 sec) [ -9719.7191] [Topology ] . ( 2650 sec) [ -9719.7183] [Topology ] . ( 2651 sec) [ -9719.7182] [GTR parameters ] . ( 2651 sec) [ -9719.7182] [Alpha ][ 0.179077] . ( 2651 sec) [ -9719.7182] [Topology ] . ( 2654 sec) [ -9719.7177] [Topology ] . ( 2655 sec) [ -9719.7177] [GTR parameters ] . ( 2656 sec) [ -9719.7176] [Alpha ][ 0.178845] . Checking for NNIs, optimizing five branches... . ( 2681 sec) [ -9719.7166] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -9797.791236 . Log likelihood obtained after SPR moves : -9719.716553 . Log likelihood of the current tree: -9719.716553. . Printing the most likely tree in file 'nucleic_M2707_115x1677_2006.phy_phyml_tree.txt'... . Best log likelihood : -9710.204538 . Time used 0h45m17s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 12301.99user 0.00system 3:27:30elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps