.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : nucleic_M2711_123x1181_2006.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : yes . Number of random starting trees : 5 . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . 18 sites are made from completely undetermined states ('X', '-', '?' or 'N')... . Compressing sequences... . 617 patterns found. (out of a total of 1181 sites) . 633 sites without polymorphism (53.60%). . [Random start 1/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . This analysis requires at least 40Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 4 sec) [ -62950.5328] [GTR parameters ] . ( 5 sec) [ -61632.0755] [Alpha ][ 0.500960] . ( 5 sec) [ -59649.8836] [ 7110] [depth= 10] . ( 5 sec) [ -59319.1748] [ 7071] [depth= 11] . ( 5 sec) [ -58728.1109] [ 7071] [depth= 2] . ( 5 sec) [ -58246.3596] [ 7044] [depth= 9] . ( 6 sec) [ -57847.1466] [ 6984] [depth= 3] . ( 6 sec) [ -57722.4737] [ 6975] [depth= 10] . ( 6 sec) [ -57385.5738] [ 6965] [depth= 1] . ( 6 sec) [ -56810.6461] [ 6944] [depth= 4] . ( 6 sec) [ -56460.8307] [ 6910] [depth= 1] . ( 7 sec) [ -55958.9008] [ 6889] [depth= 6] . ( 7 sec) [ -54505.2337] [ 6881] [depth= 7] . ( 7 sec) [ -54255.9038] [ 6875] [depth= 7] . ( 7 sec) [ -54171.1174] [ 6835] [depth= 10] . ( 7 sec) [ -53850.1949] [ 6833] [depth= 1] . ( 7 sec) [ -53204.8883] [ 6828] [depth= 4] . ( 8 sec) [ -52795.8779] [ 6828] [depth= 1] . ( 8 sec) [ -52355.0107] [ 6803] [depth= 10] . ( 8 sec) [ -51979.5148] [ 6791] [depth= 10] . ( 8 sec) [ -51672.3924] [ 6699] [depth= 16] . ( 8 sec) [ -51653.9623] [ 6699] [depth= 1] . ( 8 sec) [ -51644.1183] [ 6698] [depth= 1] . ( 9 sec) [ -51287.3415] [ 6698] [depth= 1] . ( 9 sec) [ -51262.6550] [ 6664] [depth= 2] . ( 9 sec) [ -51251.6197] [ 6663] [depth= 1] . ( 9 sec) [ -50687.8855] [ 6587] [depth= 10] . ( 9 sec) [ -50678.8230] [ 6589] [depth= 14] . ( 10 sec) [ -50670.7822] [ 6588] [depth= 14] . ( 10 sec) [ -50424.7521] [ 6581] [depth= 20] . ( 10 sec) [ -49853.3452] [ 6563] [depth= 12] . ( 10 sec) [ -48531.3022] [ 6561] [depth= 12] . ( 10 sec) [ -48110.3196] [ 6558] [depth= 3] . ( 11 sec) [ -48038.4721] [ 6549] [depth= 6] . ( 11 sec) [ -47633.0773] [ 6548] [depth= 1] . ( 11 sec) [ -47014.5662] [ 6504] [depth= 8] . ( 11 sec) [ -46956.3406] [ 6501] [depth= 2] . ( 11 sec) [ -46954.8875] [ 6501] [depth= 2] . ( 11 sec) [ -46827.7858] [ 6527] [depth= 1] . ( 12 sec) [ -46812.2622] [ 6527] [depth= 3] . ( 12 sec) [ -46752.5461] [ 6521] [depth= 4] . ( 12 sec) [ -46737.7199] [ 6458] [depth= 4] . ( 12 sec) [ -46528.0572] [ 6432] [depth= 9] . ( 12 sec) [ -45149.3154] [ 6342] [depth= 9] . ( 12 sec) [ -45001.2778] [ 6341] [depth= 12] . ( 13 sec) [ -44954.4292] [ 6339] [depth= 1] . ( 13 sec) [ -44847.8051] [ 6334] [depth= 1] . ( 13 sec) [ -44773.7953] [ 6331] [depth= 21] . ( 13 sec) [ -43345.4057] [ 6260] [depth= 3] . ( 13 sec) [ -42988.3794] [ 6260] [depth= 1] . ( 14 sec) [ -42952.8326] [ 6233] [depth= 1] . ( 14 sec) [ -42698.4609] [ 6184] [depth= 2] . ( 14 sec) [ -42652.0178] [ 6184] [depth= 1] . ( 14 sec) [ -42094.9345] [ 6116] [depth= 22] . ( 14 sec) [ -41802.6180] [ 6036] [depth= 20] . ( 15 sec) [ -41801.5216] [ 6036] [depth= 1] . ( 15 sec) [ -41446.5044] [ 5962] [depth= 26] . ( 15 sec) [ -41192.3834] [ 5960] [depth= 10] . ( 15 sec) [ -40682.6761] [ 5955] [depth= 16] . ( 15 sec) [ -40666.5141] [ 5954] [depth= 5] . ( 15 sec) [ -40532.3775] [ 5943] [depth= 3] . ( 16 sec) [ -40515.3670] [ 5940] [depth= 4] . ( 16 sec) [ -40515.0350] [ 5937] [depth= 1] . ( 16 sec) [ -40511.5267] [ 5936] [depth= 1] . ( 16 sec) [ -40511.2151] [ 5931] [depth= 3] . ( 16 sec) [ -40386.8998] [ 5922] [depth= 6] . ( 16 sec) [ -40383.1808] [ 5922] [depth= 2] . ( 17 sec) [ -40381.5983] [ 5922] [depth= 2] . ( 17 sec) [ -40305.9115] [ 5922] [depth= 24] . ( 17 sec) [ -40305.6114] [ 5922] [depth= 1] . ( 17 sec) [ -40073.6088] [ 5903] [depth= 21] . ( 17 sec) [ -39831.7587] [ 5867] [depth= 27] . ( 18 sec) [ -39830.2497] [ 5866] [depth= 25] . ( 18 sec) [ -39830.2100] [ 5866] [depth= 1] . ( 18 sec) [ -39822.5776] [ 5866] [depth= 23] . ( 18 sec) [ -39723.8635] [ 5852] [depth= 23] . ( 18 sec) [ -39709.8086] [ 5865] [depth= 1] . ( 18 sec) [ -39597.5975] [ 5852] [depth= 23] . ( 19 sec) [ -39588.0195] [ 5851] [depth= 19] . ( 19 sec) [ -39554.3495] [ 5847] [depth= 7] . ( 19 sec) [ -39473.2002] [ 5806] [depth= 3] . ( 19 sec) [ -39410.9019] [ 5797] [depth= 2] . ( 19 sec) [ -39320.2211] [ 5773] [depth= 13] . ( 20 sec) [ -39305.3108] [ 5765] [depth= 7] . ( 20 sec) [ -39230.6473] [ 5764] [depth= 16] . ( 20 sec) [ -39210.2638] [ 5733] [depth= 16] . ( 20 sec) [ -38788.8414] [ 5676] [depth= 19] . ( 20 sec) [ -38759.4408] [ 5677] [depth= 1] . ( 20 sec) [ -38472.2479] [ 5675] [depth= 11] . ( 21 sec) [ -38235.5871] [ 5647] [depth= 23] . ( 21 sec) [ -38197.9382] [ 5645] [depth= 18] . ( 21 sec) [ -38055.6422] [ 5629] [depth= 14] . ( 21 sec) [ -37974.6386] [ 5634] [depth= 3] . ( 21 sec) [ -37962.1835] [ 5632] [depth= 21] . ( 22 sec) [ -36405.0716] [ 5575] [depth= 18] . ( 22 sec) [ -36092.9323] [ 5483] [depth= 11] . ( 22 sec) [ -36044.9969] [ 5462] [depth= 19] . ( 22 sec) [ -35881.6717] [ 5424] [depth= 18] . ( 22 sec) [ -35879.3742] [ 5426] [depth= 1] . ( 22 sec) [ -35570.8649] [ 5378] [depth= 14] . ( 23 sec) [ -35324.6007] [ 5322] [depth= 7] . ( 23 sec) [ -35121.3058] [ 5296] [depth= 20] . ( 23 sec) [ -35009.2260] [ 5281] [depth= 6] . ( 23 sec) [ -34941.2145] [ 5266] [depth= 13] . ( 23 sec) [ -34869.6647] [ 5266] [depth= 1] . ( 24 sec) [ -34865.8801] [ 5266] [depth= 2] . ( 24 sec) [ -34480.9473] [ 5219] [depth= 20] . ( 24 sec) [ -34166.1572] [ 5152] [depth= 17] . ( 24 sec) [ -34158.8173] [ 5153] [depth= 3] . ( 24 sec) [ -34143.2517] [ 5152] [depth= 18] . ( 25 sec) [ -33996.6933] [ 5070] [depth= 24] . ( 25 sec) [ -33899.0323] [ 5070] [depth= 1] . ( 25 sec) [ -33832.5340] [ 5067] [depth= 2] . ( 25 sec) [ -33817.4306] [ 5061] [depth= 1] . ( 25 sec) [ -33778.3849] [ 5054] [depth= 2] . ( 26 sec) [ -33580.6571] [ 5026] [depth= 5] . ( 26 sec) [ -33576.7507] [ 5026] [depth= 10] . ( 26 sec) [ -33571.5286] [ 5025] [depth= 1] . ( 26 sec) [ -33439.6876] [ 5024] [depth= 15] . ( 26 sec) [ -33419.9398] [ 5008] [depth= 19] . ( 27 sec) [ -32939.2465] [ 5003] [depth= 1] . ( 27 sec) [ -32885.4162] [ 4985] [depth= 19] . ( 27 sec) [ -32839.4165] [ 4972] [depth= 17] . ( 27 sec) [ -32837.2306] [ 4972] [depth= 2] . ( 27 sec) [ -32835.8321] [ 4972] [depth= 22] . ( 27 sec) [ -32670.8553] [ 4929] [depth= 32] . ( 28 sec) [ -32505.4371] [ 4929] [depth= 6] . ( 28 sec) [ -32503.5905] [ 4929] [depth= 21] . ( 28 sec) [ -32412.5006] [ 4899] [depth= 5] . ( 28 sec) [ -32309.5274] [ 4887] [depth= 15] . ( 28 sec) [ -32025.3711] [ 4835] [depth= 1] . ( 29 sec) [ -31858.5882] [ 4802] [depth= 19] . ( 29 sec) [ -31858.3606] [ 4803] [depth= 1] . ( 29 sec) [ -31670.8899] [ 4802] [depth= 25] . ( 29 sec) [ -31670.2680] [ 4794] [depth= 2] . ( 29 sec) [ -31661.7634] [ 4792] [depth= 12] . ( 30 sec) [ -31593.7262] [ 4754] [depth= 31] . ( 30 sec) [ -31460.9191] [ 4753] [depth= 2] . ( 30 sec) [ -31172.3925] [ 4646] [depth= 14] . ( 30 sec) [ -31069.3932] [ 4656] [depth= 26] . ( 31 sec) [ -31057.3772] [ 4655] [depth= 1] . ( 31 sec) [ -31057.3466] [ 4655] [depth= 1] . ( 31 sec) [ -31047.4136] [ 4653] [depth= 11] . ( 31 sec) [ -30855.5943] [ 4653] [depth= 2] . ( 31 sec) [ -30854.6503] [ 4653] [depth= 7] . ( 31 sec) [ -30854.6336] [ 4653] [depth= 1] . ( 32 sec) [ -30845.1500] [ 4653] [depth= 6] . ( 32 sec) [ -30535.5241] [ 4653] [depth= 8] . ( 32 sec) [ -30049.2693] [ 4572] [depth= 14] . ( 32 sec) [ -30048.7378] [ 4572] [depth= 35] . ( 32 sec) [ -29689.2944] [ 4516] [depth= 10] . ( 32 sec) [ -29679.4761] [ 4515] [depth= 18] . ( 33 sec) [ -29622.8188] [ 4498] [depth= 4] . ( 33 sec) [ -29540.1500] [ 4498] [depth= 1] . ( 33 sec) [ -29522.1000] [ 4498] [depth= 13] . ( 33 sec) [ -29125.7423] [ 4497] [depth= 13] . ( 33 sec) [ -28585.2906] [ 4469] [depth= 21] . ( 34 sec) [ -28563.1081] [ 4469] [depth= 2] . ( 34 sec) [ -28033.4268] [ 4469] [depth= 14] . ( 34 sec) [ -28014.0013] [ 4428] [depth= 12] . ( 34 sec) [ -27392.3505] [ 4336] [depth= 8] . ( 34 sec) [ -23954.3338] [ 4192] [depth= 10] . ( 34 sec) [ -23889.5105] [ 4295] [depth= 1] . ( 35 sec) [ -23834.6235] [ 4275] [depth= 4] . ( 35 sec) [ -23359.1523] [ 4255] [depth= 17] . ( 35 sec) [ -23286.0491] [ 4255] [depth= 3] . ( 35 sec) [ -23278.7991] [ 4255] [depth= 1] . ( 35 sec) [ -23271.3240] [ 4254] [depth= 5] . ( 36 sec) [ -22827.8659] [ 4216] [depth= 16] . ( 36 sec) [ -22798.1187] [ 4211] [depth= 1] . ( 36 sec) [ -22655.9462] [ 4175] [depth= 12] . ( 36 sec) [ -22199.8680] [ 4169] [depth= 11] . ( 36 sec) [ -22169.2534] [ 4163] [depth= 2] . ( 37 sec) [ -22096.2781] [ 4139] [depth= 14] . ( 37 sec) [ -22091.0384] [ 4140] [depth= 3] . ( 37 sec) [ -22002.4436] [ 4096] [depth= 1] . ( 37 sec) [ -21819.8178] [ 4101] [depth= 10] . ( 37 sec) [ -21375.4464] [ 4075] [depth= 2] . ( 37 sec) [ -21375.1606] [ 4068] [depth= 8] . ( 38 sec) [ -21361.6588] [ 4046] [depth= 1] . ( 38 sec) [ -21360.2335] [ 4033] [depth= 18] . ( 38 sec) [ -21191.4864] [ 3998] [depth= 12] . ( 38 sec) [ -21093.1898] [ 3966] [depth= 7] . ( 39 sec) [ -21040.9097] [ 3964] [depth= 7] . ( 39 sec) [ -21011.7724] [ 3934] [depth= 2] . ( 39 sec) [ -20775.0865] [ 3902] [depth= 9] . ( 39 sec) [ -20759.9003] [ 3902] [depth= 1] . ( 39 sec) [ -20732.1263] [ 3874] [depth= 13] . ( 39 sec) [ -20604.2374] [ 3832] [depth= 10] . ( 40 sec) [ -20472.0533] [ 3832] [depth= 3] . ( 40 sec) [ -20456.3457] [ 3833] [depth= 1] . ( 40 sec) [ -20354.0531] [ 3748] [depth= 10] . ( 40 sec) [ -19547.1410] [ 3679] [depth= 13] . ( 40 sec) [ -19529.6186] [ 3680] [depth= 1] . ( 41 sec) [ -19375.3576] [ 3633] [depth= 14] . ( 41 sec) [ -19362.8019] [ 3630] [depth= 2] . ( 41 sec) [ -19340.4892] [ 3691] [depth= 1] . ( 41 sec) [ -19192.8603] [ 3670] [depth= 7] . ( 41 sec) [ -19159.6111] [ 3668] [depth= 4] . ( 42 sec) [ -18981.7138] [ 3603] [depth= 12] . ( 42 sec) [ -17785.0770] [ 3540] [depth= 10] . ( 42 sec) [ -17570.5823] [ 3446] [depth= 13] . ( 42 sec) [ -17568.0769] [ 3445] [depth= 5] . ( 42 sec) [ -17522.0091] [ 3429] [depth= 3] . ( 43 sec) [ -17506.1258] [ 3429] [depth= 1] . ( 43 sec) [ -17276.2117] [ 3402] [depth= 2] . ( 43 sec) [ -17124.0532] [ 3391] [depth= 5] . ( 43 sec) [ -17097.6945] [ 3396] [depth= 2] . ( 43 sec) [ -17038.1110] [ 3307] [depth= 9] . ( 43 sec) [ -17017.9076] [ 3337] [depth= 3] . ( 44 sec) [ -16981.6535] [ 3337] [depth= 1] . ( 44 sec) [ -16906.1112] [ 3304] [depth= 11] . ( 44 sec) [ -16902.2827] [ 3305] [depth= 6] . ( 44 sec) [ -16898.4080] [ 3305] [depth= 1] . ( 44 sec) [ -16681.1753] [ 3268] [depth= 14] . ( 44 sec) [ -16668.0722] [ 3267] [depth= 3] . ( 45 sec) [ -16663.9212] [ 3265] [depth= 3] . ( 45 sec) [ -16405.2202] [ 3163] [depth= 20] . ( 45 sec) [ -16299.5807] [ 3139] [depth= 8] . ( 45 sec) [ -16281.7125] [ 3140] [depth= 1] . ( 45 sec) [ -16278.8730] [ 3139] [depth= 1] . ( 46 sec) [ -16273.1558] [ 3138] [depth= 4] . ( 46 sec) [ -16042.3966] [ 3140] [depth= 8] . ( 46 sec) [ -16034.8045] [ 3142] [depth= 8] . ( 46 sec) [ -16034.5252] [ 3142] [depth= 1] . ( 46 sec) [ -15972.5979] [ 3142] [depth= 3] . ( 47 sec) [ -15702.5944] [ 3086] [depth= 20] . ( 47 sec) [ -15594.4200] [ 3084] [depth= 1] . ( 47 sec) [ -15327.0197] [ 3017] [depth= 7] . ( 47 sec) [ -15254.1210] [ 3001] [depth= 10] . ( 47 sec) [ -15244.6488] [ 3002] [depth= 2] . ( 47 sec) [ -15170.4561] [ 2968] [depth= 11] . ( 48 sec) [ -15119.2090] [ 2962] [depth= 1] . ( 48 sec) [ -14991.0750] [ 2933] [depth= 4] . ( 48 sec) [ -14939.3252] [ 2928] [depth= 2] . ( 48 sec) [ -14877.6323] [ 2920] [depth= 11] . ( 48 sec) [ -14862.0558] [ 2907] [depth= 7] . ( 48 sec) [ -14812.4771] [ 2946] [depth= 1] . ( 49 sec) [ -14739.9187] [ 2890] [depth= 10] . ( 49 sec) [ -14736.9446] [ 2893] [depth= 2] . ( 49 sec) [ -14728.7951] [ 2894] [depth= 1] . ( 49 sec) [ -14715.8868] [ 2894] [depth= 5] . ( 49 sec) [ -14580.4970] [ 2887] [depth= 4] . ( 50 sec) [ -14504.4332] [ 2853] [depth= 2] . ( 50 sec) [ -14486.7196] [ 2853] [depth= 5] . ( 50 sec) [ -14485.5958] [ 2853] [depth= 1] . ( 51 sec) [ -14479.1002] [ 2853] [depth= 4] . ( 51 sec) [ -14399.7393] [ 2823] [depth= 4] . ( 51 sec) [ -14388.5822] [ 2822] [depth= 1] . ( 51 sec) [ -14380.3622] [ 2823] [depth= 4] . ( 52 sec) [ -14357.2338] [ 2821] [depth= 1] . ( 52 sec) [ -14340.2760] [ 2822] [depth= 8] . ( 52 sec) [ -14332.0873] [ 2822] [depth= 9] . ( 52 sec) [ -14330.2207] [ 2824] [depth= 15] . ( 52 sec) [ -14254.9340] [ 2799] [depth= 11] . ( 52 sec) [ -14244.5066] [ 2796] [depth= 14] . ( 53 sec) [ -14230.9244] [ 2792] [depth= 3] . ( 53 sec) [ -14196.6340] [ 2792] [depth= 7] . ( 53 sec) [ -14195.5146] [ 2793] [depth= 1] . ( 53 sec) [ -14172.3111] [ 2793] [depth= 1] . ( 53 sec) [ -14159.0855] [ 2793] [depth= 1] . ( 54 sec) [ -14092.8828] [ 2795] [depth= 21] . ( 54 sec) [ -14087.7846] [ 2793] [depth= 1] . ( 54 sec) [ -14004.7480] [ 2762] [depth= 25] . ( 54 sec) [ -13945.5579] [ 2751] [depth= 5] . ( 54 sec) [ -13939.6093] [ 2763] [depth= 1] . ( 54 sec) [ -13784.7000] [ 2715] [depth= 2] . ( 55 sec) [ -13601.0871] [ 2648] [depth= 15] . ( 55 sec) [ -13584.2554] [ 2649] [depth= 1] . ( 55 sec) [ -13542.1982] [ 2649] [depth= 1] . ( 55 sec) [ -13535.5461] [ 2647] [depth= 2] . ( 55 sec) [ -13527.1620] [ 2646] [depth= 1] . ( 56 sec) [ -13524.8649] [ 2647] [depth= 1] . ( 56 sec) [ -13320.0983] [ 2615] [depth= 1] . ( 56 sec) [ -13309.3935] [ 2615] [depth= 1] . ( 56 sec) [ -13239.6872] [ 2557] [depth= 4] . ( 56 sec) [ -13139.9999] [ 2556] [depth= 1] . ( 56 sec) [ -13133.8738] [ 2556] [depth= 1] . ( 57 sec) [ -13131.5450] [ 2556] [depth= 2] . ( 57 sec) [ -13130.9635] [ 2556] [depth= 2] . ( 57 sec) [ -13110.3994] [ 2556] [depth= 1] . ( 57 sec) [ -13110.1945] [ 2556] [depth= 1] . ( 57 sec) [ -13104.5919] [ 2555] [depth= 9] . ( 58 sec) [ -13097.7442] [ 2554] [depth= 4] . ( 58 sec) [ -13097.7207] [ 2554] [depth= 1] . ( 58 sec) [ -13095.8019] [ 2554] [depth= 3] . ( 58 sec) [ -13054.9374] [ 2522] [depth= 13] . ( 58 sec) [ -13054.3897] [ 2522] [depth= 2] . ( 59 sec) [ -13054.2885] [ 2522] [depth= 1] . ( 59 sec) [ -12948.0007] [ 2474] [depth= 7] . ( 59 sec) [ -12848.6292] [ 2443] [depth= 6] . ( 59 sec) [ -12846.9056] [ 2443] [depth= 9] . ( 60 sec) [ -12845.8488] [ 2444] [depth= 1] . ( 60 sec) [ -12829.9234] [ 2468] [depth= 2] . ( 60 sec) [ -12823.3609] [ 2468] [depth= 2] . ( 60 sec) [ -12816.3959] [ 2467] [depth= 1] . ( 61 sec) [ -12777.9547] [ 2466] [depth= 1] . ( 61 sec) [ -12771.1788] [ 2469] [depth= 1] . ( 61 sec) [ -12742.0955] [ 2467] [depth= 8] . ( 61 sec) [ -12728.1791] [ 2468] [depth= 2] . ( 62 sec) [ -12722.1384] [ 2468] [depth= 1] . ( 62 sec) [ -12715.2410] [ 2454] [depth= 10] . ( 62 sec) [ -12713.8164] [ 2454] [depth= 1] . ( 63 sec) [ -12709.3815] [ 2455] [depth= 1] . ( 63 sec) [ -12708.9881] [ 2455] [depth= 8] . ( 63 sec) [ -12708.1074] [ 2455] [depth= 1] . ( 64 sec) [ -12697.1851] [ 2455] [depth= 7] . ( 64 sec) [ -12688.8731] [ 2446] [depth= 1] . ( 64 sec) [ -12647.9502] [ 2439] [depth= 3] . ( 64 sec) [ -12646.1884] [ 2441] [depth= 2] . ( 64 sec) [ -12645.7801] [ 2441] [depth= 3] . ( 66 sec) [ -11779.1160] [Branch lengths ] . ( 76 sec) [ -11618.4217] [GTR parameters ] . ( 77 sec) [ -11494.0319] [Alpha ][ 0.250961] . ( 77 sec) [ -11489.6968] [ 2435] [depth= 1] . ( 77 sec) [ -11442.9358] [ 2420] [depth= 7] . ( 77 sec) [ -11439.3059] [ 2418] [depth= 3] . ( 78 sec) [ -11438.6277] [ 2418] [depth= 2] . ( 78 sec) [ -11438.6046] [ 2418] [depth= 1] . ( 78 sec) [ -11431.9626] [ 2417] [depth= 1] . ( 78 sec) [ -11426.3756] [ 2397] [depth= 6] . ( 78 sec) [ -11416.9347] [ 2397] [depth= 1] . ( 79 sec) [ -11411.3864] [ 2396] [depth= 4] . ( 79 sec) [ -11400.7841] [ 2393] [depth= 2] . ( 79 sec) [ -11392.2133] [ 2350] [depth= 1] . ( 79 sec) [ -11388.7560] [ 2339] [depth= 8] . ( 79 sec) [ -11387.4139] [ 2338] [depth= 2] . ( 80 sec) [ -11384.8675] [ 2338] [depth= 4] . ( 80 sec) [ -11381.0839] [ 2337] [depth= 1] . ( 80 sec) [ -11381.0597] [ 2337] [depth= 1] . ( 80 sec) [ -11381.0149] [ 2337] [depth= 1] . ( 82 sec) [ -11371.4520] [ 2313] [depth= 4] . ( 82 sec) [ -11371.4260] [ 2313] [depth= 1] . ( 83 sec) [ -11368.6031] [ 2288] [depth= 1] . ( 83 sec) [ -11365.3129] [ 2287] [depth= 1] . ( 83 sec) [ -11308.3635] [ 2276] [depth= 9] . ( 83 sec) [ -11307.3969] [ 2276] [depth= 2] . ( 84 sec) [ -11307.2969] [ 2276] [depth= 2] . ( 84 sec) [ -11307.0643] [ 2276] [depth= 3] . ( 84 sec) [ -11307.0174] [ 2276] [depth= 2] . ( 85 sec) [ -11302.1502] [ 2275] [depth= 1] . ( 85 sec) [ -11278.0955] [ 2249] [depth= 13] . ( 85 sec) [ -11278.0667] [ 2249] [depth= 1] . ( 85 sec) [ -11278.0457] [ 2249] [depth= 5] . ( 85 sec) [ -11187.6963] [ 2217] [depth= 6] . ( 85 sec) [ -11172.8970] [ 2211] [depth= 5] . ( 86 sec) [ -11147.0499] [ 2204] [depth= 1] . ( 86 sec) [ -11142.7138] [ 2203] [depth= 5] . ( 86 sec) [ -11142.3900] [ 2203] [depth= 1] . ( 87 sec) [ -11142.3795] [ 2203] [depth= 1] . ( 87 sec) [ -11140.7081] [ 2202] [depth= 1] . ( 87 sec) [ -11130.2914] [ 2200] [depth= 8] . ( 87 sec) [ -11129.6402] [ 2200] [depth= 1] . ( 88 sec) [ -11122.2208] [ 2199] [depth= 1] . ( 88 sec) [ -11109.7333] [ 2201] [depth= 1] . ( 88 sec) [ -11101.8534] [ 2198] [depth= 1] . ( 88 sec) [ -11101.8108] [ 2198] [depth= 3] . ( 89 sec) [ -11101.3338] [ 2198] [depth= 3] . ( 89 sec) [ -11101.2564] [ 2198] [depth= 3] . ( 89 sec) [ -11101.2450] [ 2198] [depth= 2] . ( 89 sec) [ -11101.2298] [ 2198] [depth= 3] . ( 90 sec) [ -11101.1585] [ 2198] [depth= 1] . ( 90 sec) [ -11101.1462] [ 2198] [depth= 4] . ( 92 sec) [ -11101.1203] [ 2198] [depth= 3] . ( 92 sec) [ -11100.8709] [ 2203] [depth= 1] . ( 92 sec) [ -11100.8567] [ 2203] [depth= 1] . ( 93 sec) [ -11086.8669] [ 2207] [depth= 1] . ( 93 sec) [ -11065.2880] [ 2205] [depth= 6] . ( 95 sec) [ -11039.5534] [ 2183] [depth= 12] . ( 95 sec) [ -11037.5940] [ 2180] [depth= 2] . ( 96 sec) [ -11037.3258] [ 2175] [depth= 2] . ( 96 sec) [ -11033.8904] [ 2176] [depth= 2] . ( 96 sec) [ -11026.7157] [ 2175] [depth= 2] . ( 98 sec) [ -11026.1815] [ 2170] [depth= 1] . ( 98 sec) [ -11023.1623] [ 2170] [depth= 6] . ( 98 sec) [ -11012.2958] [ 2169] [depth= 5] . ( 98 sec) [ -11011.7656] [ 2169] [depth= 2] . ( 99 sec) [ -10987.9689] [ 2162] [depth= 2] . ( 99 sec) [ -10984.3542] [ 2162] [depth= 2] . ( 99 sec) [ -10939.1520] [ 2142] [depth= 6] . ( 102 sec) [ -10924.5972] [ 2130] [depth= 5] . ( 102 sec) [ -10924.4792] [ 2130] [depth= 1] . ( 103 sec) [ -10924.1410] [ 2130] [depth= 1] . ( 103 sec) [ -10911.8402] [ 2116] [depth= 7] . ( 104 sec) [ -10911.7518] [ 2116] [depth= 3] . ( 104 sec) [ -10911.4662] [ 2107] [depth= 6] . ( 105 sec) [ -10911.3091] [ 2107] [depth= 1] . ( 110 sec) [ -10911.1950] [ 2107] [depth= 3] . ( 114 sec) [ -10910.8445] [ 2107] [depth= 1] . ( 115 sec) [ -10910.7258] [ 2107] [depth= 1] . ( 115 sec) [ -10910.6982] [ 2107] [depth= 1] . ( 116 sec) [ -10886.9382] [ 2061] [depth= 12] . ( 116 sec) [ -10886.1312] [ 2061] [depth= 1] . ( 116 sec) [ -10885.1882] [ 2061] [depth= 2] . ( 117 sec) [ -10879.1913] [ 2062] [depth= 1] . ( 118 sec) [ -10878.8070] [ 2062] [depth= 3] . ( 120 sec) [ -10877.1554] [ 2060] [depth= 2] . ( 121 sec) [ -10859.5435] [ 2048] [depth= 1] . ( 121 sec) [ -10857.8187] [ 2049] [depth= 1] . ( 122 sec) [ -10856.6513] [ 2044] [depth= 1] . ( 122 sec) [ -10856.6327] [ 2044] [depth= 1] . ( 123 sec) [ -10856.5590] [ 2044] [depth= 2] . ( 123 sec) [ -10856.5236] [ 2044] [depth= 1] . ( 124 sec) [ -10854.5051] [ 2043] [depth= 1] . ( 124 sec) [ -10854.4709] [ 2043] [depth= 1] . ( 126 sec) [ -10850.0859] [ 2042] [depth= 3] . ( 126 sec) [ -10841.8315] [ 2038] [depth= 2] . ( 126 sec) [ -10840.3642] [ 2037] [depth= 1] . ( 127 sec) [ -10838.6941] [ 2033] [depth= 1] . ( 129 sec) [ -10837.9864] [ 2033] [depth= 2] . ( 129 sec) [ -10837.9732] [ 2033] [depth= 1] . ( 131 sec) [ -10837.8055] [ 2033] [depth= 1] . ( 131 sec) [ -10837.7903] [ 2033] [depth= 1] . ( 132 sec) [ -10837.2208] [ 2033] [depth= 1] . ( 134 sec) [ -10833.6098] [ 2036] [depth= 2] . ( 134 sec) [ -10828.0364] [ 2037] [depth= 1] . ( 135 sec) [ -10827.9864] [ 2037] [depth= 1] . ( 137 sec) [ -10827.8777] [ 2037] [depth= 2] . ( 137 sec) [ -10827.8314] [ 2037] [depth= 3] . ( 137 sec) [ -10827.8162] [ 2037] [depth= 2] . ( 138 sec) [ -10826.5422] [ 2037] [depth= 1] . ( 138 sec) [ -10812.4244] [ 2032] [depth= 1] . ( 139 sec) [ -10812.3747] [ 2032] [depth= 1] . ( 140 sec) [ -10801.2644] [ 2022] [depth= 3] . ( 140 sec) [ -10800.5517] [ 2025] [depth= 1] . ( 141 sec) [ -10799.8855] [ 2025] [depth= 1] . ( 141 sec) [ -10799.8049] [ 2025] [depth= 1] . ( 142 sec) [ -10799.7482] [ 2025] [depth= 1] . ( 142 sec) [ -10799.5110] [ 2025] [depth= 2] . ( 142 sec) [ -10799.4700] [ 2025] [depth= 1] . ( 143 sec) [ -10799.2043] [ 2025] [depth= 1] . ( 143 sec) [ -10799.1934] [ 2025] [depth= 2] . ( 144 sec) [ -10789.5563] [ 2027] [depth= 3] . ( 144 sec) [ -10789.5237] [ 2027] [depth= 1] . ( 145 sec) [ -10789.5136] [ 2027] [depth= 1] . ( 145 sec) [ -10788.3802] [ 2027] [depth= 1] . ( 147 sec) [ -10785.6390] [ 2032] [depth= 1] . ( 147 sec) [ -10778.9091] [ 2027] [depth= 1] . ( 148 sec) [ -10778.5183] [ 2028] [depth= 1] . ( 148 sec) [ -10778.3643] [ 2028] [depth= 3] . ( 149 sec) [ -10778.3423] [ 2028] [depth= 1] . ( 151 sec) [ -10778.2754] [ 2028] [depth= 2] . ( 151 sec) [ -10778.2393] [ 2028] [depth= 2] . ( 151 sec) [ -10776.4311] [ 2027] [depth= 4] . ( 153 sec) [ -10736.5961] [Branch lengths ] . ( 156 sec) [ -10735.7219] [GTR parameters ] . ( 156 sec) [ -10734.5492] [Alpha ][ 0.268808] . ( 157 sec) [ -10731.6776] [ 2027] [depth= 4] . ( 158 sec) [ -10728.1077] [ 2025] [depth= 1] . ( 159 sec) [ -10722.3510] [ 2019] [depth= 5] . ( 164 sec) [ -10721.3161] [ 2020] [depth= 1] . ( 164 sec) [ -10721.0414] [ 2018] [depth= 1] . ( 164 sec) [ -10700.3355] [ 2003] [depth= 3] . ( 167 sec) [ -10698.4417] [ 2002] [depth= 3] . ( 167 sec) [ -10691.9220] [ 2000] [depth= 1] . ( 168 sec) [ -10691.7783] [ 2005] [depth= 1] . ( 169 sec) [ -10690.7232] [ 2005] [depth= 2] . ( 169 sec) [ -10690.7128] [ 2005] [depth= 1] . ( 178 sec) [ -10690.2066] [ 2000] [depth= 1] . ( 181 sec) [ -10690.0589] [ 2003] [depth= 1] . ( 193 sec) [ -10688.1545] [ 2002] [depth= 1] . ( 209 sec) [ -10686.1794] [ 1997] [depth= 1] . ( 221 sec) [ -10686.1521] [ 1997] [depth= 1] . ( 223 sec) [ -10685.5730] [ 1997] [depth= 1] . ( 223 sec) [ -10685.5499] [ 1997] [depth= 1] . ( 227 sec) [ -10685.2992] [ 1997] [depth= 2] . ( 228 sec) [ -10684.3449] [ 1997] [depth= 1] . ( 231 sec) [ -10684.1178] [ 1996] [depth= 1] . ( 233 sec) [ -10683.9866] [ 1996] [depth= 1] . ( 233 sec) [ -10683.7994] [ 1996] [depth= 1] . ( 234 sec) [ -10683.7839] [ 1996] [depth= 2] . ( 241 sec) [ -10683.7466] [ 1996] [depth= 1] . ( 243 sec) [ -10683.7255] [ 1996] [depth= 3] . ( 245 sec) [ -10674.6135] [Branch lengths ] . ( 247 sec) [ -10674.4613] [GTR parameters ] . ( 247 sec) [ -10674.4043] [Alpha ][ 0.273151] . ( 260 sec) [ -10674.2820] [ 1995] [depth= 2] . ( 341 sec) [ -10673.3405] [Branch lengths ] . ( 345 sec) [ -10673.3124] [GTR parameters ] . ( 345 sec) [ -10673.3124] [Alpha ][ 0.273151] . ( 433 sec) [ -10669.8762] [Branch lengths ] . ( 586 sec) [ -10665.9504] [Branch lengths ] . ( 586 sec) [ -10665.9504] [Topology ] . ( 589 sec) [ -10663.3683] [Topology ] . ( 593 sec) [ -10660.3813] [Topology ] . ( 596 sec) [ -10658.6409] [Topology ] . ( 599 sec) [ -10658.3672] [Topology ] . ( 602 sec) [ -10658.2442] [Topology ] . ( 605 sec) [ -10658.1823] [Topology ] . ( 609 sec) [ -10658.1424] [GTR parameters ] . ( 610 sec) [ -10658.1194] [Alpha ][ 0.275976] . ( 610 sec) [ -10658.1194] [Topology ] . ( 613 sec) [ -10658.0811] [Topology ] . ( 616 sec) [ -10658.0629] [Topology ] . ( 619 sec) [ -10658.0534] [Topology ] . ( 622 sec) [ -10658.0484] [Topology ] . ( 625 sec) [ -10658.0457] [Topology ] . ( 628 sec) [ -10658.0444] [Topology ] . ( 631 sec) [ -10658.0412] [GTR parameters ] . ( 631 sec) [ -10658.0409] [Alpha ][ 0.276260] . ( 631 sec) [ -10658.0409] [Topology ] . ( 634 sec) [ -10658.0401] [Topology ] . ( 636 sec) [ -10658.0400] [GTR parameters ] . ( 636 sec) [ -10658.0400] [Alpha ][ 0.276260] . Checking for NNIs, optimizing five branches... . ( 659 sec) [ -10658.0399] [Topology ] . Checking for NNIs, optimizing five branches... . ( 681 sec) [ -10658.0397] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -10658.039656. . [Random start 2/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 3 sec) [ -58549.4826] [GTR parameters ] . ( 4 sec) [ -57111.1097] [Alpha ][ 0.500960] . ( 4 sec) [ -56959.7337] [ 7372] [depth= 5] . ( 4 sec) [ -56326.0474] [ 7369] [depth= 3] . ( 4 sec) [ -55972.7779] [ 7331] [depth= 17] . ( 4 sec) [ -55965.9018] [ 7290] [depth= 1] . ( 5 sec) [ -55395.0186] [ 7227] [depth= 11] . ( 5 sec) [ -55334.6368] [ 7210] [depth= 1] . ( 5 sec) [ -55113.4116] [ 7190] [depth= 11] . ( 5 sec) [ -54791.4459] [ 7156] [depth= 4] . ( 5 sec) [ -54723.2896] [ 7140] [depth= 11] . ( 5 sec) [ -54721.3461] [ 7140] [depth= 1] . ( 5 sec) [ -54707.1618] [ 7131] [depth= 3] . ( 6 sec) [ -54399.3636] [ 7092] [depth= 4] . ( 6 sec) [ -54235.9453] [ 7087] [depth= 9] . ( 6 sec) [ -53784.8829] [ 7075] [depth= 5] . ( 6 sec) [ -53091.5423] [ 7068] [depth= 11] . ( 6 sec) [ -52807.7089] [ 7020] [depth= 7] . ( 6 sec) [ -52550.1392] [ 7016] [depth= 15] . ( 7 sec) [ -52335.5494] [ 7004] [depth= 2] . ( 7 sec) [ -52271.2662] [ 6999] [depth= 9] . ( 7 sec) [ -52056.6917] [ 6976] [depth= 19] . ( 7 sec) [ -51880.2484] [ 6949] [depth= 4] . ( 7 sec) [ -51242.2679] [ 6878] [depth= 7] . ( 7 sec) [ -50308.2500] [ 6790] [depth= 5] . ( 8 sec) [ -50188.6181] [ 6789] [depth= 10] . ( 8 sec) [ -49126.7476] [ 6708] [depth= 16] . ( 8 sec) [ -47887.5167] [ 6694] [depth= 19] . ( 8 sec) [ -47410.6082] [ 6694] [depth= 1] . ( 8 sec) [ -47049.1280] [ 6641] [depth= 15] . ( 8 sec) [ -46821.8831] [ 6634] [depth= 1] . ( 8 sec) [ -46699.9590] [ 6608] [depth= 2] . ( 9 sec) [ -45514.1633] [ 6606] [depth= 2] . ( 9 sec) [ -45467.4027] [ 6573] [depth= 11] . ( 9 sec) [ -45297.5080] [ 6497] [depth= 15] . ( 9 sec) [ -45106.3743] [ 6497] [depth= 10] . ( 9 sec) [ -44910.8360] [ 6444] [depth= 11] . ( 10 sec) [ -44667.8242] [ 6411] [depth= 2] . ( 10 sec) [ -44377.0868] [ 6391] [depth= 12] . ( 10 sec) [ -44344.6601] [ 6390] [depth= 4] . ( 10 sec) [ -44170.4256] [ 6361] [depth= 14] . ( 10 sec) [ -43798.0894] [ 6317] [depth= 28] . ( 10 sec) [ -43790.9209] [ 6316] [depth= 2] . ( 11 sec) [ -43666.3302] [ 6293] [depth= 8] . ( 11 sec) [ -43603.4797] [ 6291] [depth= 2] . ( 11 sec) [ -43457.4616] [ 6225] [depth= 23] . ( 11 sec) [ -43157.2350] [ 6157] [depth= 11] . ( 11 sec) [ -42712.9120] [ 6094] [depth= 9] . ( 11 sec) [ -42425.8935] [ 6094] [depth= 7] . ( 12 sec) [ -41373.9868] [ 6022] [depth= 3] . ( 12 sec) [ -41267.6774] [ 6022] [depth= 3] . ( 12 sec) [ -41178.7531] [ 6017] [depth= 18] . ( 12 sec) [ -41164.1575] [ 6008] [depth= 13] . ( 12 sec) [ -40906.7690] [ 5939] [depth= 16] . ( 12 sec) [ -39923.9165] [ 5879] [depth= 9] . ( 13 sec) [ -38994.0862] [ 5807] [depth= 17] . ( 13 sec) [ -38932.7170] [ 5792] [depth= 1] . ( 13 sec) [ -38820.0847] [ 5790] [depth= 1] . ( 13 sec) [ -37835.5946] [ 5781] [depth= 32] . ( 13 sec) [ -37762.9655] [ 5736] [depth= 9] . ( 14 sec) [ -37274.8288] [ 5724] [depth= 26] . ( 14 sec) [ -37004.6712] [ 5723] [depth= 27] . ( 14 sec) [ -36653.7025] [ 5708] [depth= 28] . ( 14 sec) [ -36476.5310] [ 5704] [depth= 1] . ( 14 sec) [ -36289.0782] [ 5722] [depth= 1] . ( 14 sec) [ -36089.5258] [ 5680] [depth= 15] . ( 15 sec) [ -35728.0502] [ 5611] [depth= 1] . ( 15 sec) [ -35720.2150] [ 5583] [depth= 14] . ( 15 sec) [ -35714.2758] [ 5581] [depth= 2] . ( 15 sec) [ -35589.8821] [ 5580] [depth= 10] . ( 15 sec) [ -35051.0301] [ 5479] [depth= 9] . ( 15 sec) [ -35036.0416] [ 5478] [depth= 1] . ( 16 sec) [ -34514.4577] [ 5436] [depth= 11] . ( 16 sec) [ -34513.6733] [ 5436] [depth= 1] . ( 16 sec) [ -34453.2810] [ 5417] [depth= 6] . ( 16 sec) [ -34360.7302] [ 5396] [depth= 4] . ( 16 sec) [ -34124.3726] [ 5378] [depth= 18] . ( 16 sec) [ -34050.7019] [ 5352] [depth= 10] . ( 17 sec) [ -34042.6669] [ 5351] [depth= 1] . ( 17 sec) [ -34022.5742] [ 5349] [depth= 3] . ( 17 sec) [ -32877.0322] [ 5349] [depth= 1] . ( 17 sec) [ -32727.0458] [ 5349] [depth= 1] . ( 17 sec) [ -32497.3693] [ 5349] [depth= 6] . ( 17 sec) [ -32493.9567] [ 5349] [depth= 1] . ( 18 sec) [ -32197.5672] [ 5334] [depth= 6] . ( 18 sec) [ -32039.5200] [ 5334] [depth= 3] . ( 18 sec) [ -31973.6507] [ 5334] [depth= 6] . ( 18 sec) [ -31931.0505] [ 5334] [depth= 1] . ( 18 sec) [ -31703.1033] [ 5280] [depth= 12] . ( 18 sec) [ -31696.2818] [ 5280] [depth= 1] . ( 19 sec) [ -31639.9459] [ 5245] [depth= 10] . ( 19 sec) [ -31488.6762] [ 5244] [depth= 11] . ( 19 sec) [ -31484.7665] [ 5244] [depth= 7] . ( 19 sec) [ -30902.6992] [ 5128] [depth= 7] . ( 19 sec) [ -30535.5680] [ 5086] [depth= 1] . ( 20 sec) [ -30463.2584] [ 5049] [depth= 25] . ( 20 sec) [ -30432.0237] [ 5048] [depth= 2] . ( 20 sec) [ -30432.0060] [ 5048] [depth= 1] . ( 20 sec) [ -30182.3050] [ 5048] [depth= 1] . ( 20 sec) [ -30179.7475] [ 5048] [depth= 10] . ( 21 sec) [ -30100.6851] [ 5045] [depth= 1] . ( 21 sec) [ -30057.6139] [ 5022] [depth= 6] . ( 21 sec) [ -29808.9269] [ 5014] [depth= 8] . ( 21 sec) [ -29549.8802] [ 4912] [depth= 19] . ( 21 sec) [ -29513.1884] [ 4911] [depth= 2] . ( 21 sec) [ -29512.3673] [ 4910] [depth= 16] . ( 22 sec) [ -29509.4974] [ 4910] [depth= 5] . ( 22 sec) [ -29389.1212] [ 4919] [depth= 12] . ( 22 sec) [ -29122.3969] [ 4861] [depth= 11] . ( 22 sec) [ -29122.0209] [ 4861] [depth= 2] . ( 22 sec) [ -29055.6699] [ 4866] [depth= 1] . ( 23 sec) [ -29040.7411] [ 4867] [depth= 2] . ( 23 sec) [ -29027.3064] [ 4866] [depth= 3] . ( 24 sec) [ -28951.9964] [ 4844] [depth= 1] . ( 24 sec) [ -28938.5060] [ 4844] [depth= 1] . ( 24 sec) [ -28668.2510] [ 4796] [depth= 5] . ( 24 sec) [ -28452.0977] [ 4733] [depth= 12] . ( 24 sec) [ -26949.3648] [ 4669] [depth= 12] . ( 24 sec) [ -26819.4595] [ 4671] [depth= 5] . ( 25 sec) [ -26681.4339] [ 4666] [depth= 3] . ( 25 sec) [ -26375.5472] [ 4665] [depth= 3] . ( 25 sec) [ -26355.1292] [ 4663] [depth= 2] . ( 25 sec) [ -26144.6744] [ 4609] [depth= 8] . ( 25 sec) [ -25883.8596] [ 4571] [depth= 11] . ( 25 sec) [ -25730.0392] [ 4524] [depth= 1] . ( 26 sec) [ -25502.7683] [ 4445] [depth= 1] . ( 26 sec) [ -25473.9922] [ 4442] [depth= 9] . ( 26 sec) [ -25331.6256] [ 4415] [depth= 2] . ( 26 sec) [ -25029.4130] [ 4402] [depth= 10] . ( 26 sec) [ -25025.3189] [ 4399] [depth= 4] . ( 26 sec) [ -25024.3938] [ 4401] [depth= 1] . ( 27 sec) [ -24927.1592] [ 4348] [depth= 7] . ( 27 sec) [ -24899.6327] [ 4347] [depth= 2] . ( 27 sec) [ -24113.7439] [ 4302] [depth= 11] . ( 27 sec) [ -23896.8839] [ 4235] [depth= 2] . ( 28 sec) [ -23548.9640] [ 4162] [depth= 16] . ( 28 sec) [ -23360.2759] [ 4159] [depth= 1] . ( 28 sec) [ -23350.3296] [ 4142] [depth= 17] . ( 28 sec) [ -23210.7007] [ 4125] [depth= 12] . ( 28 sec) [ -23180.9540] [ 4123] [depth= 2] . ( 28 sec) [ -22908.9878] [ 4073] [depth= 12] . ( 29 sec) [ -22622.1680] [ 4003] [depth= 7] . ( 29 sec) [ -22585.5931] [ 3974] [depth= 12] . ( 29 sec) [ -22527.1994] [ 3971] [depth= 2] . ( 29 sec) [ -22519.8795] [ 3971] [depth= 1] . ( 29 sec) [ -22369.5550] [ 3943] [depth= 5] . ( 29 sec) [ -22312.7288] [ 3913] [depth= 5] . ( 30 sec) [ -22163.7202] [ 3895] [depth= 14] . ( 30 sec) [ -22160.1583] [ 3890] [depth= 6] . ( 30 sec) [ -21694.2085] [ 3871] [depth= 13] . ( 30 sec) [ -21685.3014] [ 3873] [depth= 1] . ( 30 sec) [ -20864.7093] [ 3809] [depth= 5] . ( 30 sec) [ -20612.8493] [ 3762] [depth= 4] . ( 31 sec) [ -20422.2252] [ 3778] [depth= 1] . ( 31 sec) [ -19951.6115] [ 3707] [depth= 20] . ( 31 sec) [ -19360.4390] [ 3586] [depth= 14] . ( 31 sec) [ -19335.2389] [ 3587] [depth= 1] . ( 32 sec) [ -19306.9558] [ 3573] [depth= 3] . ( 32 sec) [ -19214.5483] [ 3571] [depth= 18] . ( 32 sec) [ -19214.4359] [ 3571] [depth= 1] . ( 32 sec) [ -19133.3420] [ 3542] [depth= 5] . ( 32 sec) [ -18767.2803] [ 3469] [depth= 15] . ( 32 sec) [ -18532.6749] [ 3419] [depth= 9] . ( 33 sec) [ -18501.2802] [ 3418] [depth= 1] . ( 33 sec) [ -18477.5816] [ 3418] [depth= 2] . ( 33 sec) [ -18473.2844] [ 3418] [depth= 1] . ( 33 sec) [ -18447.0472] [ 3389] [depth= 1] . ( 33 sec) [ -18194.8926] [ 3327] [depth= 17] . ( 33 sec) [ -18096.2602] [ 3329] [depth= 3] . ( 34 sec) [ -18000.0945] [ 3325] [depth= 2] . ( 34 sec) [ -17986.2935] [ 3320] [depth= 16] . ( 35 sec) [ -17884.3518] [ 3302] [depth= 13] . ( 35 sec) [ -17711.1807] [ 3262] [depth= 2] . ( 35 sec) [ -17711.1160] [ 3262] [depth= 1] . ( 35 sec) [ -17496.7584] [ 3253] [depth= 12] . ( 35 sec) [ -17389.9582] [ 3305] [depth= 1] . ( 35 sec) [ -16876.9999] [ 3253] [depth= 1] . ( 36 sec) [ -16793.7818] [ 3203] [depth= 3] . ( 36 sec) [ -16786.0792] [ 3203] [depth= 1] . ( 36 sec) [ -16743.9051] [ 3199] [depth= 14] . ( 36 sec) [ -16490.5407] [ 3111] [depth= 13] . ( 37 sec) [ -16484.7307] [ 3111] [depth= 2] . ( 37 sec) [ -16381.5466] [ 3100] [depth= 4] . ( 37 sec) [ -16316.4143] [ 3066] [depth= 1] . ( 37 sec) [ -16253.1202] [ 3052] [depth= 10] . ( 37 sec) [ -16055.3028] [ 3040] [depth= 1] . ( 37 sec) [ -16041.5655] [ 3039] [depth= 1] . ( 38 sec) [ -16039.8938] [ 3039] [depth= 8] . ( 38 sec) [ -16011.9088] [ 3039] [depth= 2] . ( 38 sec) [ -15963.6991] [ 3014] [depth= 17] . ( 38 sec) [ -15927.5857] [ 3008] [depth= 1] . ( 38 sec) [ -15927.1981] [ 3009] [depth= 1] . ( 38 sec) [ -15926.8344] [ 3009] [depth= 13] . ( 39 sec) [ -15881.7275] [ 2967] [depth= 9] . ( 39 sec) [ -15880.9299] [ 2968] [depth= 1] . ( 39 sec) [ -15877.2144] [ 2966] [depth= 5] . ( 39 sec) [ -15877.0745] [ 2966] [depth= 1] . ( 39 sec) [ -15876.7706] [ 2966] [depth= 12] . ( 40 sec) [ -15875.4030] [ 2966] [depth= 2] . ( 40 sec) [ -15875.2105] [ 2966] [depth= 13] . ( 40 sec) [ -15875.1863] [ 2966] [depth= 6] . ( 40 sec) [ -15604.9228] [ 2922] [depth= 8] . ( 40 sec) [ -15598.0863] [ 2921] [depth= 3] . ( 41 sec) [ -15577.2093] [ 2921] [depth= 4] . ( 41 sec) [ -15576.5422] [ 2921] [depth= 3] . ( 41 sec) [ -15559.0898] [ 2906] [depth= 7] . ( 41 sec) [ -15400.5909] [ 2872] [depth= 5] . ( 41 sec) [ -15399.5465] [ 2872] [depth= 2] . ( 42 sec) [ -15382.0595] [ 2857] [depth= 5] . ( 42 sec) [ -15331.7715] [ 2857] [depth= 1] . ( 42 sec) [ -15303.3922] [ 2853] [depth= 1] . ( 42 sec) [ -15291.0769] [ 2849] [depth= 7] . ( 42 sec) [ -15270.4020] [ 2841] [depth= 2] . ( 43 sec) [ -15241.4063] [ 2841] [depth= 4] . ( 43 sec) [ -15196.6649] [ 2822] [depth= 5] . ( 43 sec) [ -15140.1557] [ 2822] [depth= 1] . ( 43 sec) [ -15125.9358] [ 2822] [depth= 1] . ( 43 sec) [ -15124.1712] [ 2822] [depth= 1] . ( 44 sec) [ -15122.8166] [ 2822] [depth= 6] . ( 44 sec) [ -15122.6593] [ 2822] [depth= 3] . ( 44 sec) [ -15112.6648] [ 2820] [depth= 7] . ( 44 sec) [ -14999.5621] [ 2789] [depth= 7] . ( 44 sec) [ -14803.8799] [ 2743] [depth= 16] . ( 45 sec) [ -14550.9029] [ 2699] [depth= 9] . ( 45 sec) [ -14539.5818] [ 2698] [depth= 1] . ( 45 sec) [ -14537.5492] [ 2698] [depth= 1] . ( 45 sec) [ -14537.5313] [ 2698] [depth= 4] . ( 45 sec) [ -14522.4519] [ 2679] [depth= 9] . ( 45 sec) [ -14507.7983] [ 2675] [depth= 5] . ( 46 sec) [ -14482.8483] [ 2662] [depth= 4] . ( 46 sec) [ -14445.4337] [ 2641] [depth= 4] . ( 46 sec) [ -14400.5694] [ 2633] [depth= 5] . ( 46 sec) [ -14399.8100] [ 2633] [depth= 1] . ( 47 sec) [ -14336.2016] [ 2618] [depth= 11] . ( 47 sec) [ -14294.8155] [ 2600] [depth= 1] . ( 47 sec) [ -14212.8698] [ 2588] [depth= 5] . ( 47 sec) [ -14115.4717] [ 2571] [depth= 20] . ( 47 sec) [ -13974.1164] [ 2562] [depth= 2] . ( 47 sec) [ -13969.6819] [ 2561] [depth= 5] . ( 47 sec) [ -13959.5931] [ 2561] [depth= 1] . ( 48 sec) [ -13875.4406] [ 2558] [depth= 7] . ( 48 sec) [ -13875.2154] [ 2558] [depth= 2] . ( 48 sec) [ -13874.5453] [ 2558] [depth= 2] . ( 50 sec) [ -13865.4860] [ 2556] [depth= 4] . ( 50 sec) [ -13864.0904] [ 2556] [depth= 3] . ( 50 sec) [ -13844.0040] [ 2554] [depth= 2] . ( 50 sec) [ -13839.9475] [ 2558] [depth= 4] . ( 50 sec) [ -13838.2778] [ 2558] [depth= 1] . ( 51 sec) [ -13827.1901] [ 2558] [depth= 4] . ( 51 sec) [ -13817.7323] [ 2556] [depth= 1] . ( 51 sec) [ -13817.7114] [ 2556] [depth= 1] . ( 52 sec) [ -13817.4353] [ 2556] [depth= 2] . ( 52 sec) [ -13817.2692] [ 2556] [depth= 5] . ( 52 sec) [ -13813.8604] [ 2556] [depth= 2] . ( 52 sec) [ -13778.7840] [ 2546] [depth= 5] . ( 52 sec) [ -13778.0507] [ 2545] [depth= 1] . ( 52 sec) [ -13619.0839] [ 2509] [depth= 4] . ( 53 sec) [ -13581.0178] [ 2497] [depth= 1] . ( 53 sec) [ -13560.6597] [ 2500] [depth= 12] . ( 53 sec) [ -13454.5701] [ 2471] [depth= 4] . ( 54 sec) [ -13454.3993] [ 2471] [depth= 1] . ( 54 sec) [ -13412.9160] [ 2460] [depth= 8] . ( 54 sec) [ -13398.0815] [ 2459] [depth= 6] . ( 55 sec) [ -13392.5774] [ 2450] [depth= 9] . ( 55 sec) [ -13336.4094] [ 2443] [depth= 8] . ( 55 sec) [ -13220.1598] [ 2446] [depth= 17] . ( 55 sec) [ -13215.6850] [ 2449] [depth= 2] . ( 55 sec) [ -13097.9552] [ 2429] [depth= 5] . ( 56 sec) [ -13076.2940] [ 2429] [depth= 1] . ( 56 sec) [ -13027.0678] [ 2429] [depth= 2] . ( 56 sec) [ -12875.3642] [ 2390] [depth= 9] . ( 56 sec) [ -12849.0220] [ 2390] [depth= 3] . ( 56 sec) [ -12841.9543] [ 2390] [depth= 3] . ( 56 sec) [ -12829.9579] [ 2384] [depth= 1] . ( 57 sec) [ -12820.8878] [ 2371] [depth= 6] . ( 57 sec) [ -12734.6319] [ 2351] [depth= 17] . ( 57 sec) [ -12724.1801] [ 2351] [depth= 6] . ( 57 sec) [ -12717.5342] [ 2349] [depth= 1] . ( 57 sec) [ -12649.1560] [ 2334] [depth= 2] . ( 57 sec) [ -12360.7519] [ 2343] [depth= 1] . ( 58 sec) [ -12294.3441] [ 2334] [depth= 2] . ( 58 sec) [ -12292.4962] [ 2341] [depth= 6] . ( 58 sec) [ -12286.4042] [ 2341] [depth= 1] . ( 58 sec) [ -12253.9370] [ 2332] [depth= 1] . ( 59 sec) [ -12245.8153] [ 2331] [depth= 1] . ( 59 sec) [ -12244.7688] [ 2331] [depth= 1] . ( 59 sec) [ -12244.5769] [ 2331] [depth= 1] . ( 59 sec) [ -12148.7089] [ 2331] [depth= 2] . ( 60 sec) [ -12147.3641] [ 2331] [depth= 1] . ( 60 sec) [ -11915.9589] [ 2278] [depth= 6] . ( 60 sec) [ -11885.1995] [ 2277] [depth= 1] . ( 62 sec) [ -11528.0172] [Branch lengths ] . ( 64 sec) [ -11407.5700] [GTR parameters ] . ( 65 sec) [ -11306.4835] [Alpha ][ 0.259601] . ( 65 sec) [ -11284.1575] [ 2238] [depth= 4] . ( 65 sec) [ -11266.4641] [ 2240] [depth= 1] . ( 65 sec) [ -11228.1072] [ 2220] [depth= 4] . ( 66 sec) [ -11227.6664] [ 2220] [depth= 1] . ( 66 sec) [ -11227.6457] [ 2220] [depth= 3] . ( 67 sec) [ -11219.0985] [ 2219] [depth= 6] . ( 67 sec) [ -11218.8924] [ 2219] [depth= 4] . ( 69 sec) [ -11218.7540] [ 2219] [depth= 1] . ( 69 sec) [ -11215.6937] [ 2215] [depth= 3] . ( 71 sec) [ -11215.6794] [ 2215] [depth= 1] . ( 71 sec) [ -11153.7328] [ 2210] [depth= 3] . ( 71 sec) [ -11148.7756] [ 2207] [depth= 1] . ( 72 sec) [ -11148.5880] [ 2207] [depth= 1] . ( 72 sec) [ -11147.5587] [ 2207] [depth= 1] . ( 73 sec) [ -11142.8149] [ 2209] [depth= 3] . ( 73 sec) [ -11142.7479] [ 2209] [depth= 1] . ( 73 sec) [ -11142.6894] [ 2209] [depth= 4] . ( 73 sec) [ -11112.0915] [ 2178] [depth= 4] . ( 74 sec) [ -11075.2043] [ 2164] [depth= 2] . ( 75 sec) [ -11063.9478] [ 2155] [depth= 4] . ( 77 sec) [ -11063.8922] [ 2155] [depth= 1] . ( 77 sec) [ -11061.0880] [ 2154] [depth= 1] . ( 78 sec) [ -11055.7129] [ 2149] [depth= 3] . ( 78 sec) [ -11052.2370] [ 2152] [depth= 2] . ( 82 sec) [ -11052.1591] [ 2140] [depth= 7] . ( 82 sec) [ -11052.1424] [ 2140] [depth= 6] . ( 83 sec) [ -11051.8365] [ 2140] [depth= 1] . ( 84 sec) [ -11051.6971] [ 2140] [depth= 1] . ( 85 sec) [ -11051.6739] [ 2140] [depth= 1] . ( 86 sec) [ -11044.6640] [ 2139] [depth= 3] . ( 87 sec) [ -11016.6443] [ 2111] [depth= 12] . ( 88 sec) [ -11016.6187] [ 2111] [depth= 7] . ( 90 sec) [ -11014.0463] [ 2111] [depth= 1] . ( 91 sec) [ -11014.0296] [ 2111] [depth= 2] . ( 94 sec) [ -10947.9295] [ 2058] [depth= 10] . ( 94 sec) [ -10942.4178] [ 2059] [depth= 1] . ( 95 sec) [ -10942.0610] [ 2059] [depth= 2] . ( 97 sec) [ -10941.1709] [ 2059] [depth= 1] . ( 98 sec) [ -10935.5975] [ 2053] [depth= 5] . ( 98 sec) [ -10935.5563] [ 2053] [depth= 2] . ( 103 sec) [ -10932.2835] [ 2052] [depth= 1] . ( 107 sec) [ -10919.4102] [ 2050] [depth= 2] . ( 108 sec) [ -10919.3693] [ 2050] [depth= 1] . ( 109 sec) [ -10916.8722] [ 2045] [depth= 1] . ( 109 sec) [ -10913.9604] [ 2039] [depth= 3] . ( 109 sec) [ -10858.3268] [ 2030] [depth= 8] . ( 110 sec) [ -10851.2083] [ 2022] [depth= 6] . ( 112 sec) [ -10850.3823] [ 2022] [depth= 3] . ( 112 sec) [ -10850.3670] [ 2022] [depth= 1] . ( 113 sec) [ -10847.4048] [ 2016] [depth= 4] . ( 113 sec) [ -10844.0312] [ 2017] [depth= 1] . ( 114 sec) [ -10843.6750] [ 2017] [depth= 1] . ( 115 sec) [ -10827.5208] [ 2010] [depth= 2] . ( 116 sec) [ -10822.2319] [ 2012] [depth= 1] . ( 116 sec) [ -10819.7880] [ 2009] [depth= 1] . ( 120 sec) [ -10819.5753] [ 2013] [depth= 1] . ( 126 sec) [ -10818.2536] [ 2017] [depth= 1] . ( 126 sec) [ -10790.6929] [ 2013] [depth= 1] . ( 127 sec) [ -10790.5476] [ 2013] [depth= 1] . ( 129 sec) [ -10790.5304] [ 2013] [depth= 1] . ( 130 sec) [ -10784.3352] [ 2015] [depth= 2] . ( 130 sec) [ -10783.9435] [ 2015] [depth= 1] . ( 130 sec) [ -10783.0741] [ 2014] [depth= 1] . ( 132 sec) [ -10783.0035] [ 2014] [depth= 2] . ( 134 sec) [ -10776.8783] [ 2005] [depth= 4] . ( 137 sec) [ -10776.5487] [ 2004] [depth= 4] . ( 137 sec) [ -10776.5377] [ 2004] [depth= 1] . ( 145 sec) [ -10774.8910] [ 2007] [depth= 1] . ( 145 sec) [ -10774.8198] [ 2007] [depth= 1] . ( 145 sec) [ -10774.7223] [ 2007] [depth= 2] . ( 146 sec) [ -10766.7998] [ 2010] [depth= 1] . ( 146 sec) [ -10766.7882] [ 2010] [depth= 2] . ( 146 sec) [ -10764.6997] [ 2013] [depth= 1] . ( 146 sec) [ -10760.8671] [ 2012] [depth= 1] . ( 148 sec) [ -10758.5350] [ 2008] [depth= 1] . ( 148 sec) [ -10756.9486] [ 2012] [depth= 1] . ( 148 sec) [ -10730.4907] [ 2013] [depth= 1] . ( 149 sec) [ -10725.8535] [ 2012] [depth= 1] . ( 152 sec) [ -10674.3903] [Branch lengths ] . ( 154 sec) [ -10672.4461] [GTR parameters ] . ( 154 sec) [ -10672.1484] [Alpha ][ 0.269121] . ( 154 sec) [ -10671.9054] [ 2007] [depth= 1] . ( 155 sec) [ -10670.7272] [ 2005] [depth= 1] . ( 155 sec) [ -10670.7168] [ 2005] [depth= 2] . ( 159 sec) [ -10670.6376] [ 2005] [depth= 1] . ( 164 sec) [ -10670.1124] [ 2008] [depth= 1] . ( 164 sec) [ -10668.4594] [ 2010] [depth= 2] . ( 173 sec) [ -10666.5881] [ 2007] [depth= 6] . ( 203 sec) [ -10666.3303] [ 2004] [depth= 1] . ( 208 sec) [ -10666.3168] [ 2004] [depth= 2] . ( 210 sec) [ -10666.0696] [ 2003] [depth= 3] . ( 220 sec) [ -10665.2710] [ 1999] [depth= 1] . ( 240 sec) [ -10665.1415] [ 2001] [depth= 1] . ( 245 sec) [ -10659.7977] [Branch lengths ] . ( 247 sec) [ -10659.6610] [GTR parameters ] . ( 247 sec) [ -10659.5667] [Alpha ][ 0.274537] . ( 283 sec) [ -10659.5561] [ 2001] [depth= 1] . ( 304 sec) [ -10659.2631] [ 2001] [depth= 3] . ( 340 sec) [ -10658.5323] [Branch lengths ] . ( 341 sec) [ -10658.5069] [GTR parameters ] . ( 342 sec) [ -10658.5068] [Alpha ][ 0.274812] . ( 437 sec) [ -10658.3904] [Branch lengths ] . ( 459 sec) [ -10658.2258] [ 2000] [depth= 1] . ( 472 sec) [ -10657.6030] [ 2025] [depth= 3] . ( 571 sec) [ -10657.3571] [ 2022] [depth= 2] . ( 587 sec) [ -10657.2924] [ 2023] [depth= 1] . ( 599 sec) [ -10656.1752] [Branch lengths ] . ( 601 sec) [ -10656.1405] [GTR parameters ] . ( 601 sec) [ -10656.1396] [Alpha ][ 0.275322] . ( 634 sec) [ -10656.1276] [ 2023] [depth= 1] . ( 759 sec) [ -10656.0938] [Branch lengths ] . ( 760 sec) [ -10656.0937] [GTR parameters ] . ( 760 sec) [ -10656.0935] [Alpha ][ 0.275598] . ( 760 sec) [ -10656.0935] [Topology ] . ( 763 sec) [ -10656.0902] [Topology ] . ( 766 sec) [ -10656.0890] [Topology ] . ( 770 sec) [ -10656.0884] [Topology ] . ( 770 sec) [ -10656.0884] [GTR parameters ] . ( 770 sec) [ -10656.0884] [Alpha ][ 0.275598] . ( 770 sec) [ -10656.0884] [Topology ] . ( 774 sec) [ -10656.0881] [Topology ] . ( 774 sec) [ -10656.0880] [GTR parameters ] . ( 774 sec) [ -10656.0880] [Alpha ][ 0.275598] . Checking for NNIs, optimizing five branches... . ( 797 sec) [ -10655.8448] [Topology ] . Checking for NNIs, optimizing five branches... . ( 819 sec) [ -10655.6464] [Topology ] . Checking for NNIs, optimizing five branches... . ( 841 sec) [ -10655.6462] [Topology ] . Checking for NNIs, optimizing five branches... . ( 863 sec) [ -10655.6460] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -10655.646036. . [Random start 3/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 3 sec) [ -57977.0120] [GTR parameters ] . ( 3 sec) [ -56603.2389] [Alpha ][ 0.500960] . ( 4 sec) [ -56328.2359] [ 7312] [depth= 10] . ( 4 sec) [ -55939.9641] [ 7292] [depth= 11] . ( 4 sec) [ -55701.1165] [ 7288] [depth= 7] . ( 4 sec) [ -55299.6066] [ 7285] [depth= 2] . ( 4 sec) [ -54775.4171] [ 7234] [depth= 8] . ( 5 sec) [ -54659.7614] [ 7236] [depth= 1] . ( 5 sec) [ -54449.3010] [ 7206] [depth= 14] . ( 5 sec) [ -52605.9268] [ 7086] [depth= 11] . ( 5 sec) [ -52276.4737] [ 7086] [depth= 11] . ( 5 sec) [ -51969.4783] [ 7008] [depth= 10] . ( 5 sec) [ -51786.6452] [ 6994] [depth= 10] . ( 6 sec) [ -51565.3390] [ 6993] [depth= 1] . ( 6 sec) [ -51157.6931] [ 6954] [depth= 9] . ( 6 sec) [ -50394.4106] [ 6879] [depth= 11] . ( 6 sec) [ -50315.1386] [ 6850] [depth= 2] . ( 6 sec) [ -50113.8148] [ 6819] [depth= 10] . ( 7 sec) [ -49857.4060] [ 6804] [depth= 1] . ( 7 sec) [ -49613.9274] [ 6779] [depth= 11] . ( 7 sec) [ -49488.7701] [ 6740] [depth= 19] . ( 7 sec) [ -49153.6722] [ 6670] [depth= 12] . ( 7 sec) [ -49053.2670] [ 6640] [depth= 10] . ( 7 sec) [ -48271.6982] [ 6536] [depth= 17] . ( 8 sec) [ -48142.9162] [ 6534] [depth= 10] . ( 8 sec) [ -48068.8154] [ 6556] [depth= 1] . ( 8 sec) [ -47283.4378] [ 6503] [depth= 15] . ( 8 sec) [ -46970.2014] [ 6503] [depth= 17] . ( 8 sec) [ -46918.7958] [ 6500] [depth= 11] . ( 8 sec) [ -46672.4819] [ 6434] [depth= 11] . ( 9 sec) [ -46515.3154] [ 6426] [depth= 5] . ( 9 sec) [ -46473.0073] [ 6424] [depth= 3] . ( 9 sec) [ -46299.6667] [ 6413] [depth= 12] . ( 9 sec) [ -45727.2135] [ 6411] [depth= 2] . ( 9 sec) [ -45449.7330] [ 6386] [depth= 19] . ( 10 sec) [ -44982.0225] [ 6328] [depth= 11] . ( 10 sec) [ -44913.9159] [ 6327] [depth= 1] . ( 10 sec) [ -44686.5829] [ 6295] [depth= 12] . ( 10 sec) [ -44436.6760] [ 6291] [depth= 1] . ( 10 sec) [ -44251.6937] [ 6271] [depth= 20] . ( 10 sec) [ -44121.0997] [ 6266] [depth= 9] . ( 11 sec) [ -44048.8461] [ 6226] [depth= 20] . ( 11 sec) [ -44019.8295] [ 6226] [depth= 21] . ( 11 sec) [ -43715.8596] [ 6190] [depth= 21] . ( 11 sec) [ -43169.5002] [ 6046] [depth= 2] . ( 11 sec) [ -42587.0065] [ 6074] [depth= 20] . ( 11 sec) [ -42283.9259] [ 6073] [depth= 17] . ( 12 sec) [ -42066.6825] [ 6001] [depth= 18] . ( 12 sec) [ -41660.7523] [ 6000] [depth= 2] . ( 12 sec) [ -41270.9749] [ 5924] [depth= 16] . ( 12 sec) [ -41100.3429] [ 5920] [depth= 8] . ( 12 sec) [ -40520.1966] [ 5896] [depth= 12] . ( 13 sec) [ -40175.6525] [ 5890] [depth= 7] . ( 13 sec) [ -40153.6282] [ 5890] [depth= 1] . ( 13 sec) [ -39006.0136] [ 5784] [depth= 12] . ( 13 sec) [ -38248.5100] [ 5768] [depth= 12] . ( 13 sec) [ -37916.8305] [ 5712] [depth= 21] . ( 13 sec) [ -37858.1331] [ 5711] [depth= 7] . ( 14 sec) [ -37852.1158] [ 5711] [depth= 5] . ( 14 sec) [ -37674.9832] [ 5687] [depth= 7] . ( 14 sec) [ -37673.4637] [ 5687] [depth= 1] . ( 14 sec) [ -37646.8659] [ 5688] [depth= 6] . ( 14 sec) [ -37510.1349] [ 5669] [depth= 14] . ( 14 sec) [ -37421.4865] [ 5670] [depth= 7] . ( 15 sec) [ -37409.3714] [ 5666] [depth= 22] . ( 15 sec) [ -37318.8421] [ 5664] [depth= 1] . ( 15 sec) [ -37239.4003] [ 5668] [depth= 1] . ( 15 sec) [ -37014.2217] [ 5651] [depth= 23] . ( 15 sec) [ -36668.4017] [ 5650] [depth= 14] . ( 16 sec) [ -36659.6389] [ 5650] [depth= 1] . ( 16 sec) [ -36653.7646] [ 5648] [depth= 1] . ( 16 sec) [ -36427.3604] [ 5590] [depth= 13] . ( 16 sec) [ -36275.7170] [ 5590] [depth= 1] . ( 16 sec) [ -35566.5912] [ 5509] [depth= 14] . ( 16 sec) [ -34687.4156] [ 5406] [depth= 11] . ( 17 sec) [ -33930.9071] [ 5379] [depth= 9] . ( 17 sec) [ -33892.7127] [ 5379] [depth= 1] . ( 17 sec) [ -33535.4917] [ 5229] [depth= 20] . ( 17 sec) [ -33427.4460] [ 5229] [depth= 1] . ( 17 sec) [ -33419.0432] [ 5229] [depth= 1] . ( 18 sec) [ -32807.5874] [ 5157] [depth= 14] . ( 18 sec) [ -32757.7400] [ 5142] [depth= 26] . ( 18 sec) [ -32730.2201] [ 5142] [depth= 10] . ( 18 sec) [ -32552.4762] [ 5094] [depth= 2] . ( 18 sec) [ -32247.5989] [ 5074] [depth= 4] . ( 18 sec) [ -31948.7977] [ 4999] [depth= 22] . ( 19 sec) [ -31407.1841] [ 4955] [depth= 3] . ( 19 sec) [ -31320.0481] [ 4945] [depth= 14] . ( 19 sec) [ -31210.7429] [ 4915] [depth= 25] . ( 19 sec) [ -30945.3762] [ 4917] [depth= 5] . ( 19 sec) [ -30935.9430] [ 4918] [depth= 1] . ( 19 sec) [ -30891.0002] [ 4914] [depth= 13] . ( 20 sec) [ -30854.3102] [ 4909] [depth= 3] . ( 20 sec) [ -30751.1708] [ 4907] [depth= 10] . ( 20 sec) [ -30618.0704] [ 4869] [depth= 4] . ( 20 sec) [ -30156.6819] [ 4862] [depth= 6] . ( 20 sec) [ -30067.8504] [ 4857] [depth= 3] . ( 20 sec) [ -29537.0481] [ 4812] [depth= 18] . ( 21 sec) [ -29418.6368] [ 4791] [depth= 9] . ( 21 sec) [ -29137.7208] [ 4800] [depth= 2] . ( 21 sec) [ -28846.7141] [ 4711] [depth= 3] . ( 21 sec) [ -28643.1792] [ 4641] [depth= 9] . ( 21 sec) [ -28629.2879] [ 4641] [depth= 1] . ( 21 sec) [ -28484.2414] [ 4640] [depth= 14] . ( 22 sec) [ -28327.9288] [ 4615] [depth= 4] . ( 22 sec) [ -27737.1059] [ 4614] [depth= 1] . ( 22 sec) [ -27569.1451] [ 4598] [depth= 1] . ( 22 sec) [ -27405.3545] [ 4553] [depth= 16] . ( 22 sec) [ -27358.8642] [ 4541] [depth= 1] . ( 22 sec) [ -27351.5055] [ 4541] [depth= 1] . ( 23 sec) [ -26991.8717] [ 4527] [depth= 11] . ( 23 sec) [ -26547.9434] [ 4461] [depth= 1] . ( 23 sec) [ -26279.0993] [ 4419] [depth= 11] . ( 23 sec) [ -25928.1447] [ 4406] [depth= 1] . ( 23 sec) [ -25638.7366] [ 4384] [depth= 8] . ( 23 sec) [ -25637.0875] [ 4384] [depth= 2] . ( 24 sec) [ -25618.8062] [ 4378] [depth= 1] . ( 24 sec) [ -25610.3510] [ 4378] [depth= 15] . ( 24 sec) [ -25540.3483] [ 4377] [depth= 1] . ( 24 sec) [ -25535.2426] [ 4377] [depth= 1] . ( 24 sec) [ -25505.0608] [ 4375] [depth= 1] . ( 24 sec) [ -25496.9684] [ 4353] [depth= 10] . ( 25 sec) [ -25481.0430] [ 4336] [depth= 1] . ( 25 sec) [ -25463.1316] [ 4336] [depth= 1] . ( 25 sec) [ -25413.6067] [ 4298] [depth= 8] . ( 25 sec) [ -25382.8869] [ 4275] [depth= 2] . ( 25 sec) [ -25372.2506] [ 4276] [depth= 1] . ( 26 sec) [ -24719.8586] [ 4270] [depth= 11] . ( 26 sec) [ -24711.6598] [ 4260] [depth= 1] . ( 26 sec) [ -24696.7823] [ 4259] [depth= 4] . ( 26 sec) [ -24686.2930] [ 4259] [depth= 1] . ( 26 sec) [ -24667.7239] [ 4257] [depth= 5] . ( 27 sec) [ -24632.9679] [ 4236] [depth= 3] . ( 27 sec) [ -24392.1068] [ 4199] [depth= 15] . ( 27 sec) [ -23976.1547] [ 4149] [depth= 11] . ( 27 sec) [ -23956.3025] [ 4149] [depth= 1] . ( 27 sec) [ -23910.5711] [ 4145] [depth= 12] . ( 28 sec) [ -23473.1079] [ 4064] [depth= 11] . ( 28 sec) [ -23457.4989] [ 4064] [depth= 2] . ( 28 sec) [ -23409.5359] [ 4053] [depth= 1] . ( 28 sec) [ -23283.8558] [ 4035] [depth= 4] . ( 28 sec) [ -23279.5944] [ 4035] [depth= 2] . ( 28 sec) [ -23259.5406] [ 4037] [depth= 13] . ( 29 sec) [ -22910.8778] [ 4000] [depth= 9] . ( 29 sec) [ -22735.4867] [ 3954] [depth= 14] . ( 29 sec) [ -22587.7888] [ 3926] [depth= 8] . ( 29 sec) [ -22481.2307] [ 3923] [depth= 14] . ( 29 sec) [ -22073.9598] [ 3904] [depth= 10] . ( 29 sec) [ -21899.8298] [ 3877] [depth= 1] . ( 30 sec) [ -21831.7675] [ 3857] [depth= 14] . ( 30 sec) [ -21822.3362] [ 3862] [depth= 12] . ( 30 sec) [ -21801.3947] [ 3860] [depth= 3] . ( 30 sec) [ -21636.7692] [ 3830] [depth= 2] . ( 31 sec) [ -21454.6347] [ 3823] [depth= 8] . ( 31 sec) [ -21420.6908] [ 3826] [depth= 1] . ( 31 sec) [ -21193.0342] [ 3792] [depth= 5] . ( 31 sec) [ -21163.8400] [ 3775] [depth= 1] . ( 31 sec) [ -21032.3600] [ 3767] [depth= 7] . ( 31 sec) [ -20930.6275] [ 3765] [depth= 4] . ( 32 sec) [ -20888.0586] [ 3750] [depth= 6] . ( 32 sec) [ -20877.5522] [ 3750] [depth= 2] . ( 32 sec) [ -20869.5008] [ 3748] [depth= 6] . ( 32 sec) [ -20868.1414] [ 3748] [depth= 1] . ( 32 sec) [ -20865.6200] [ 3747] [depth= 13] . ( 32 sec) [ -20829.7487] [ 3741] [depth= 10] . ( 33 sec) [ -20776.3540] [ 3721] [depth= 5] . ( 33 sec) [ -20755.6249] [ 3718] [depth= 2] . ( 33 sec) [ -20570.2002] [ 3695] [depth= 14] . ( 33 sec) [ -20569.0182] [ 3695] [depth= 1] . ( 33 sec) [ -20142.8356] [ 3667] [depth= 1] . ( 34 sec) [ -19956.9740] [ 3668] [depth= 1] . ( 34 sec) [ -19739.9344] [ 3608] [depth= 7] . ( 34 sec) [ -19718.9138] [ 3609] [depth= 1] . ( 34 sec) [ -19711.9447] [ 3608] [depth= 2] . ( 34 sec) [ -19553.3493] [ 3576] [depth= 9] . ( 34 sec) [ -19315.8430] [ 3571] [depth= 3] . ( 35 sec) [ -19276.0614] [ 3560] [depth= 11] . ( 35 sec) [ -19272.9721] [ 3560] [depth= 1] . ( 35 sec) [ -19161.3433] [ 3562] [depth= 1] . ( 35 sec) [ -19106.9713] [ 3542] [depth= 2] . ( 35 sec) [ -18990.4864] [ 3491] [depth= 3] . ( 35 sec) [ -18814.2821] [ 3489] [depth= 3] . ( 36 sec) [ -18810.2959] [ 3482] [depth= 2] . ( 36 sec) [ -18668.8154] [ 3436] [depth= 10] . ( 36 sec) [ -18656.7875] [ 3436] [depth= 1] . ( 36 sec) [ -18624.1695] [ 3436] [depth= 1] . ( 36 sec) [ -18609.8039] [ 3435] [depth= 9] . ( 37 sec) [ -18382.0956] [ 3347] [depth= 10] . ( 37 sec) [ -18341.9065] [ 3307] [depth= 1] . ( 37 sec) [ -18285.5391] [ 3300] [depth= 5] . ( 38 sec) [ -18265.9988] [ 3300] [depth= 7] . ( 38 sec) [ -18258.5203] [ 3301] [depth= 1] . ( 38 sec) [ -18231.3122] [ 3301] [depth= 1] . ( 38 sec) [ -18217.9605] [ 3300] [depth= 15] . ( 38 sec) [ -18179.6361] [ 3300] [depth= 1] . ( 39 sec) [ -18176.7429] [ 3299] [depth= 3] . ( 39 sec) [ -18074.1339] [ 3302] [depth= 1] . ( 39 sec) [ -17915.5068] [ 3291] [depth= 1] . ( 39 sec) [ -17913.7459] [ 3292] [depth= 1] . ( 39 sec) [ -17771.5521] [ 3273] [depth= 9] . ( 39 sec) [ -17749.4760] [ 3273] [depth= 9] . ( 40 sec) [ -17636.4252] [ 3189] [depth= 9] . ( 40 sec) [ -16936.5686] [ 3190] [depth= 1] . ( 40 sec) [ -16922.7342] [ 3189] [depth= 1] . ( 40 sec) [ -16629.2296] [ 3133] [depth= 9] . ( 40 sec) [ -16589.7843] [ 3134] [depth= 1] . ( 40 sec) [ -16408.6353] [ 3073] [depth= 7] . ( 41 sec) [ -16198.2936] [ 3014] [depth= 16] . ( 41 sec) [ -15879.2254] [ 2905] [depth= 12] . ( 41 sec) [ -15854.0989] [ 2905] [depth= 1] . ( 41 sec) [ -15823.7698] [ 2903] [depth= 7] . ( 41 sec) [ -15820.1970] [ 2903] [depth= 11] . ( 42 sec) [ -15807.1563] [ 2903] [depth= 1] . ( 42 sec) [ -15768.1344] [ 2905] [depth= 1] . ( 42 sec) [ -15673.6560] [ 2872] [depth= 8] . ( 42 sec) [ -15672.4306] [ 2872] [depth= 1] . ( 42 sec) [ -15655.8962] [ 2872] [depth= 2] . ( 42 sec) [ -15586.5837] [ 2866] [depth= 1] . ( 43 sec) [ -15560.6030] [ 2863] [depth= 7] . ( 43 sec) [ -15301.5572] [ 2800] [depth= 5] . ( 43 sec) [ -15273.4304] [ 2798] [depth= 2] . ( 43 sec) [ -15258.3357] [ 2797] [depth= 2] . ( 43 sec) [ -15244.2166] [ 2797] [depth= 3] . ( 44 sec) [ -15159.1203] [ 2797] [depth= 2] . ( 44 sec) [ -15154.5162] [ 2797] [depth= 1] . ( 44 sec) [ -15153.0780] [ 2797] [depth= 1] . ( 44 sec) [ -14961.8126] [ 2764] [depth= 8] . ( 44 sec) [ -14879.7354] [ 2736] [depth= 3] . ( 44 sec) [ -14829.7049] [ 2733] [depth= 3] . ( 45 sec) [ -14825.4441] [ 2733] [depth= 2] . ( 45 sec) [ -14825.3663] [ 2737] [depth= 6] . ( 45 sec) [ -14757.6519] [ 2729] [depth= 2] . ( 46 sec) [ -14741.8115] [ 2715] [depth= 2] . ( 46 sec) [ -14669.1871] [ 2703] [depth= 1] . ( 46 sec) [ -14666.0085] [ 2702] [depth= 1] . ( 46 sec) [ -14638.6238] [ 2691] [depth= 2] . ( 46 sec) [ -14585.5398] [ 2678] [depth= 8] . ( 46 sec) [ -14579.5790] [ 2678] [depth= 1] . ( 47 sec) [ -14570.9302] [ 2678] [depth= 1] . ( 47 sec) [ -14570.3595] [ 2678] [depth= 3] . ( 47 sec) [ -14428.2552] [ 2640] [depth= 6] . ( 47 sec) [ -14395.8660] [ 2632] [depth= 8] . ( 48 sec) [ -14353.9569] [ 2632] [depth= 7] . ( 48 sec) [ -14344.5502] [ 2632] [depth= 1] . ( 48 sec) [ -14286.4168] [ 2608] [depth= 9] . ( 48 sec) [ -14276.9760] [ 2607] [depth= 3] . ( 48 sec) [ -14276.6044] [ 2609] [depth= 14] . ( 48 sec) [ -14238.4308] [ 2605] [depth= 1] . ( 49 sec) [ -14126.8265] [ 2603] [depth= 6] . ( 49 sec) [ -14098.9519] [ 2590] [depth= 1] . ( 49 sec) [ -14082.9832] [ 2590] [depth= 2] . ( 49 sec) [ -13842.4957] [ 2610] [depth= 1] . ( 49 sec) [ -13781.1234] [ 2610] [depth= 3] . ( 49 sec) [ -13759.5096] [ 2610] [depth= 2] . ( 50 sec) [ -13754.2344] [ 2611] [depth= 2] . ( 50 sec) [ -13753.2085] [ 2611] [depth= 1] . ( 50 sec) [ -13752.8684] [ 2610] [depth= 3] . ( 50 sec) [ -13746.0720] [ 2606] [depth= 1] . ( 50 sec) [ -13734.5800] [ 2601] [depth= 10] . ( 50 sec) [ -13710.3526] [ 2578] [depth= 15] . ( 51 sec) [ -13666.0626] [ 2561] [depth= 1] . ( 51 sec) [ -13432.8313] [ 2505] [depth= 10] . ( 51 sec) [ -13343.4666] [ 2480] [depth= 8] . ( 51 sec) [ -13280.8725] [ 2470] [depth= 3] . ( 51 sec) [ -13269.3190] [ 2472] [depth= 2] . ( 52 sec) [ -13266.6183] [ 2472] [depth= 8] . ( 52 sec) [ -13240.2484] [ 2466] [depth= 3] . ( 52 sec) [ -13237.3347] [ 2466] [depth= 1] . ( 52 sec) [ -13207.8816] [ 2445] [depth= 7] . ( 53 sec) [ -13204.9900] [ 2445] [depth= 1] . ( 53 sec) [ -13170.6201] [ 2443] [depth= 6] . ( 53 sec) [ -13074.6966] [ 2435] [depth= 1] . ( 54 sec) [ -12997.5486] [ 2417] [depth= 6] . ( 55 sec) [ -12995.4909] [ 2412] [depth= 1] . ( 55 sec) [ -12994.9404] [ 2412] [depth= 5] . ( 55 sec) [ -12993.4957] [ 2412] [depth= 3] . ( 56 sec) [ -12993.4795] [ 2412] [depth= 2] . ( 56 sec) [ -12993.4158] [ 2412] [depth= 1] . ( 56 sec) [ -12992.9853] [ 2412] [depth= 7] . ( 56 sec) [ -12943.4606] [ 2411] [depth= 1] . ( 56 sec) [ -12657.8151] [ 2386] [depth= 12] . ( 57 sec) [ -12592.7746] [ 2386] [depth= 1] . ( 57 sec) [ -12581.9933] [ 2375] [depth= 1] . ( 57 sec) [ -12581.8159] [ 2375] [depth= 6] . ( 57 sec) [ -12581.7970] [ 2375] [depth= 3] . ( 57 sec) [ -12489.8018] [ 2359] [depth= 23] . ( 58 sec) [ -12486.4578] [ 2359] [depth= 9] . ( 58 sec) [ -12388.5092] [ 2301] [depth= 13] . ( 58 sec) [ -12380.1319] [ 2302] [depth= 2] . ( 59 sec) [ -12379.0368] [ 2301] [depth= 1] . ( 59 sec) [ -12378.8577] [ 2301] [depth= 5] . ( 59 sec) [ -12378.8185] [ 2301] [depth= 6] . ( 59 sec) [ -12368.9293] [ 2301] [depth= 1] . ( 59 sec) [ -12365.2024] [ 2302] [depth= 1] . ( 59 sec) [ -12363.7370] [ 2306] [depth= 1] . ( 60 sec) [ -12341.2579] [ 2299] [depth= 1] . ( 60 sec) [ -12331.8954] [ 2295] [depth= 2] . ( 60 sec) [ -12331.4406] [ 2295] [depth= 1] . ( 60 sec) [ -12316.3658] [ 2295] [depth= 2] . ( 60 sec) [ -12301.6966] [ 2294] [depth= 4] . ( 61 sec) [ -12301.5115] [ 2294] [depth= 2] . ( 62 sec) [ -11948.6136] [Branch lengths ] . ( 66 sec) [ -11633.4694] [GTR parameters ] . ( 66 sec) [ -11533.6740] [Alpha ][ 0.256739] . ( 66 sec) [ -11521.0197] [ 2288] [depth= 1] . ( 67 sec) [ -11519.4542] [ 2287] [depth= 1] . ( 67 sec) [ -11510.3932] [ 2292] [depth= 11] . ( 68 sec) [ -11510.3715] [ 2292] [depth= 1] . ( 68 sec) [ -11510.2095] [ 2292] [depth= 4] . ( 69 sec) [ -11466.9591] [ 2274] [depth= 8] . ( 69 sec) [ -11455.4603] [ 2265] [depth= 6] . ( 70 sec) [ -11455.3229] [ 2265] [depth= 1] . ( 70 sec) [ -11334.8352] [ 2238] [depth= 7] . ( 70 sec) [ -11287.7619] [ 2238] [depth= 1] . ( 70 sec) [ -11287.7488] [ 2238] [depth= 12] . ( 71 sec) [ -11271.9081] [ 2236] [depth= 4] . ( 71 sec) [ -11266.3921] [ 2236] [depth= 7] . ( 71 sec) [ -11266.3798] [ 2236] [depth= 1] . ( 72 sec) [ -11208.0649] [ 2202] [depth= 7] . ( 72 sec) [ -11152.3238] [ 2191] [depth= 3] . ( 72 sec) [ -11142.5723] [ 2161] [depth= 3] . ( 73 sec) [ -11142.5082] [ 2161] [depth= 6] . ( 73 sec) [ -11142.3995] [ 2160] [depth= 3] . ( 73 sec) [ -11140.9796] [ 2161] [depth= 7] . ( 74 sec) [ -11137.0366] [ 2159] [depth= 3] . ( 74 sec) [ -11064.4374] [ 2116] [depth= 9] . ( 74 sec) [ -11049.4385] [ 2110] [depth= 7] . ( 75 sec) [ -11049.4055] [ 2110] [depth= 3] . ( 75 sec) [ -11026.3319] [ 2107] [depth= 1] . ( 76 sec) [ -11025.9960] [ 2107] [depth= 10] . ( 76 sec) [ -11023.6570] [ 2107] [depth= 1] . ( 76 sec) [ -11023.6415] [ 2107] [depth= 1] . ( 77 sec) [ -11010.0761] [ 2101] [depth= 6] . ( 77 sec) [ -10949.8287] [ 2071] [depth= 9] . ( 77 sec) [ -10949.7162] [ 2072] [depth= 2] . ( 78 sec) [ -10949.6203] [ 2072] [depth= 1] . ( 78 sec) [ -10944.7441] [ 2071] [depth= 3] . ( 78 sec) [ -10944.4888] [ 2071] [depth= 2] . ( 78 sec) [ -10944.4452] [ 2071] [depth= 1] . ( 79 sec) [ -10941.0887] [ 2070] [depth= 8] . ( 79 sec) [ -10941.0662] [ 2070] [depth= 1] . ( 80 sec) [ -10934.4585] [ 2069] [depth= 2] . ( 80 sec) [ -10934.4382] [ 2069] [depth= 1] . ( 81 sec) [ -10928.9671] [ 2071] [depth= 3] . ( 81 sec) [ -10926.7523] [ 2070] [depth= 7] . ( 81 sec) [ -10899.8520] [ 2054] [depth= 5] . ( 82 sec) [ -10891.6874] [ 2053] [depth= 7] . ( 82 sec) [ -10891.6726] [ 2053] [depth= 1] . ( 82 sec) [ -10888.3068] [ 2052] [depth= 1] . ( 84 sec) [ -10886.5307] [ 2052] [depth= 1] . ( 84 sec) [ -10878.7848] [ 2048] [depth= 1] . ( 84 sec) [ -10877.6265] [ 2049] [depth= 1] . ( 84 sec) [ -10877.5157] [ 2049] [depth= 1] . ( 85 sec) [ -10876.6277] [ 2051] [depth= 2] . ( 86 sec) [ -10859.9342] [ 2049] [depth= 1] . ( 86 sec) [ -10859.5041] [ 2049] [depth= 1] . ( 87 sec) [ -10859.4383] [ 2049] [depth= 8] . ( 88 sec) [ -10859.4227] [ 2049] [depth= 1] . ( 88 sec) [ -10859.3525] [ 2049] [depth= 1] . ( 89 sec) [ -10859.3247] [ 2049] [depth= 1] . ( 89 sec) [ -10859.2117] [ 2049] [depth= 3] . ( 89 sec) [ -10854.1594] [ 2048] [depth= 4] . ( 90 sec) [ -10852.7310] [ 2048] [depth= 1] . ( 91 sec) [ -10852.7164] [ 2048] [depth= 1] . ( 94 sec) [ -10851.0644] [ 2046] [depth= 3] . ( 94 sec) [ -10851.0467] [ 2045] [depth= 1] . ( 95 sec) [ -10838.3578] [ 2042] [depth= 2] . ( 95 sec) [ -10838.3472] [ 2042] [depth= 1] . ( 97 sec) [ -10834.1097] [ 2041] [depth= 4] . ( 97 sec) [ -10833.7158] [ 2041] [depth= 1] . ( 97 sec) [ -10805.2814] [ 2030] [depth= 2] . ( 98 sec) [ -10805.2711] [ 2030] [depth= 3] . ( 99 sec) [ -10805.1391] [ 2030] [depth= 6] . ( 101 sec) [ -10803.6071] [ 2030] [depth= 1] . ( 102 sec) [ -10803.4480] [ 2030] [depth= 1] . ( 102 sec) [ -10801.4861] [ 2032] [depth= 1] . ( 102 sec) [ -10801.3664] [ 2032] [depth= 1] . ( 102 sec) [ -10782.8669] [ 2011] [depth= 4] . ( 103 sec) [ -10782.7427] [ 2011] [depth= 1] . ( 103 sec) [ -10779.9905] [ 2009] [depth= 1] . ( 103 sec) [ -10779.1944] [ 2012] [depth= 1] . ( 104 sec) [ -10777.5312] [ 2011] [depth= 2] . ( 105 sec) [ -10774.4738] [ 2010] [depth= 3] . ( 105 sec) [ -10774.1882] [ 2010] [depth= 1] . ( 105 sec) [ -10769.0966] [ 2010] [depth= 1] . ( 106 sec) [ -10767.8686] [ 2009] [depth= 1] . ( 107 sec) [ -10767.5777] [ 2009] [depth= 2] . ( 108 sec) [ -10767.1247] [ 2009] [depth= 3] . ( 108 sec) [ -10766.1039] [ 2012] [depth= 1] . ( 108 sec) [ -10746.9329] [ 2006] [depth= 5] . ( 109 sec) [ -10746.6907] [ 2005] [depth= 1] . ( 110 sec) [ -10746.5381] [ 2005] [depth= 2] . ( 111 sec) [ -10746.4501] [ 2005] [depth= 1] . ( 111 sec) [ -10743.1815] [ 2003] [depth= 1] . ( 112 sec) [ -10743.1196] [ 2003] [depth= 1] . ( 113 sec) [ -10742.2160] [ 2003] [depth= 2] . ( 114 sec) [ -10741.7240] [ 2003] [depth= 5] . ( 114 sec) [ -10741.7015] [ 2003] [depth= 1] . ( 116 sec) [ -10739.1949] [ 1998] [depth= 2] . ( 117 sec) [ -10739.1845] [ 1998] [depth= 1] . ( 119 sec) [ -10738.7666] [ 1998] [depth= 1] . ( 119 sec) [ -10738.4480] [ 1998] [depth= 2] . ( 119 sec) [ -10738.3687] [ 1998] [depth= 2] . ( 119 sec) [ -10738.3464] [ 1998] [depth= 1] . ( 121 sec) [ -10736.2710] [ 1999] [depth= 3] . ( 121 sec) [ -10735.2669] [ 1999] [depth= 1] . ( 121 sec) [ -10735.2552] [ 1999] [depth= 4] . ( 123 sec) [ -10734.4307] [ 2000] [depth= 1] . ( 124 sec) [ -10733.1858] [ 2000] [depth= 5] . ( 124 sec) [ -10731.5729] [ 2002] [depth= 1] . ( 128 sec) [ -10731.4524] [ 2004] [depth= 1] . ( 130 sec) [ -10731.3436] [ 2004] [depth= 1] . ( 132 sec) [ -10726.3874] [ 2004] [depth= 1] . ( 136 sec) [ -10691.0065] [Branch lengths ] . ( 138 sec) [ -10687.7948] [GTR parameters ] . ( 138 sec) [ -10686.8950] [Alpha ][ 0.272987] . ( 139 sec) [ -10686.8487] [ 2004] [depth= 1] . ( 140 sec) [ -10686.0536] [ 2004] [depth= 3] . ( 142 sec) [ -10684.9536] [ 2004] [depth= 1] . ( 142 sec) [ -10680.2580] [ 2004] [depth= 1] . ( 142 sec) [ -10673.6311] [ 2003] [depth= 6] . ( 145 sec) [ -10673.2782] [ 2001] [depth= 1] . ( 146 sec) [ -10672.8566] [ 2002] [depth= 1] . ( 146 sec) [ -10672.7214] [ 2002] [depth= 2] . ( 147 sec) [ -10672.5133] [ 2004] [depth= 1] . ( 151 sec) [ -10672.3392] [ 2002] [depth= 1] . ( 159 sec) [ -10671.9126] [ 2004] [depth= 2] . ( 164 sec) [ -10670.0859] [ 2002] [depth= 1] . ( 167 sec) [ -10670.0680] [ 2002] [depth= 1] . ( 168 sec) [ -10670.0398] [ 2002] [depth= 1] . ( 179 sec) [ -10669.7502] [ 2004] [depth= 1] . ( 184 sec) [ -10669.7268] [ 2004] [depth= 1] . ( 188 sec) [ -10669.6775] [ 2004] [depth= 1] . ( 191 sec) [ -10669.6580] [ 2004] [depth= 1] . ( 202 sec) [ -10669.5402] [ 2003] [depth= 1] . ( 228 sec) [ -10666.3604] [Branch lengths ] . ( 230 sec) [ -10666.3232] [GTR parameters ] . ( 230 sec) [ -10666.3218] [Alpha ][ 0.273630] . ( 238 sec) [ -10665.8078] [ 2000] [depth= 3] . ( 241 sec) [ -10665.4488] [ 2002] [depth= 2] . ( 245 sec) [ -10665.3246] [ 2007] [depth= 3] . ( 245 sec) [ -10660.6940] [ 2002] [depth= 1] . ( 253 sec) [ -10659.8177] [ 2000] [depth= 2] . ( 259 sec) [ -10659.7693] [ 2000] [depth= 1] . ( 305 sec) [ -10659.1691] [ 1997] [depth= 1] . ( 322 sec) [ -10657.1817] [Branch lengths ] . ( 324 sec) [ -10657.1719] [GTR parameters ] . ( 324 sec) [ -10657.1717] [Alpha ][ 0.273284] . ( 338 sec) [ -10657.1555] [ 2000] [depth= 1] . ( 414 sec) [ -10656.7176] [Branch lengths ] . ( 416 sec) [ -10656.7170] [GTR parameters ] . ( 416 sec) [ -10656.7167] [Alpha ][ 0.273557] . ( 577 sec) [ -10656.7024] [Branch lengths ] . ( 577 sec) [ -10656.7024] [Topology ] . ( 580 sec) [ -10656.4497] [Topology ] . ( 583 sec) [ -10656.3928] [Topology ] . ( 586 sec) [ -10656.3788] [Topology ] . ( 589 sec) [ -10656.3741] [Topology ] . ( 592 sec) [ -10656.3724] [Topology ] . ( 595 sec) [ -10656.3717] [Topology ] . ( 597 sec) [ -10656.3705] [GTR parameters ] . ( 597 sec) [ -10656.3702] [Alpha ][ 0.273830] . ( 597 sec) [ -10656.3702] [Topology ] . ( 600 sec) [ -10656.3698] [Topology ] . ( 601 sec) [ -10656.3698] [GTR parameters ] . ( 601 sec) [ -10656.3698] [Alpha ][ 0.273830] . Checking for NNIs, optimizing five branches... . ( 623 sec) [ -10656.3692] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -10656.369244. . [Random start 4/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 5 sec) [ -59384.8886] [GTR parameters ] . ( 5 sec) [ -57963.3874] [Alpha ][ 0.500960] . ( 6 sec) [ -57733.1040] [ 7377] [depth= 14] . ( 6 sec) [ -57484.3731] [ 7374] [depth= 9] . ( 6 sec) [ -57376.1136] [ 7373] [depth= 1] . ( 6 sec) [ -57037.5397] [ 7353] [depth= 13] . ( 6 sec) [ -56987.5992] [ 7308] [depth= 4] . ( 6 sec) [ -56527.3109] [ 7312] [depth= 12] . ( 7 sec) [ -55819.2473] [ 7292] [depth= 8] . ( 7 sec) [ -55799.0850] [ 7183] [depth= 1] . ( 7 sec) [ -55661.3814] [ 7168] [depth= 10] . ( 7 sec) [ -55439.5396] [ 7158] [depth= 4] . ( 7 sec) [ -55201.6862] [ 7157] [depth= 7] . ( 7 sec) [ -55075.9697] [ 7115] [depth= 6] . ( 8 sec) [ -54846.9360] [ 7107] [depth= 1] . ( 8 sec) [ -54598.6952] [ 7088] [depth= 14] . ( 8 sec) [ -54163.0292] [ 7084] [depth= 1] . ( 8 sec) [ -53846.4984] [ 7043] [depth= 19] . ( 8 sec) [ -53031.8817] [ 7038] [depth= 1] . ( 8 sec) [ -52378.6520] [ 6960] [depth= 15] . ( 9 sec) [ -51601.7770] [ 6936] [depth= 14] . ( 9 sec) [ -51561.9859] [ 6903] [depth= 8] . ( 9 sec) [ -51212.2683] [ 6902] [depth= 3] . ( 9 sec) [ -51156.5392] [ 6850] [depth= 3] . ( 9 sec) [ -50794.9083] [ 6759] [depth= 24] . ( 9 sec) [ -50180.6181] [ 6690] [depth= 4] . ( 10 sec) [ -50121.5803] [ 6682] [depth= 1] . ( 10 sec) [ -49767.8686] [ 6637] [depth= 8] . ( 10 sec) [ -49487.3062] [ 6597] [depth= 7] . ( 10 sec) [ -49167.7185] [ 6525] [depth= 13] . ( 10 sec) [ -49051.0338] [ 6525] [depth= 15] . ( 10 sec) [ -48305.7217] [ 6489] [depth= 12] . ( 11 sec) [ -47976.5892] [ 6374] [depth= 8] . ( 11 sec) [ -47730.5709] [ 6374] [depth= 13] . ( 11 sec) [ -47579.9976] [ 6344] [depth= 2] . ( 11 sec) [ -47363.9267] [ 6338] [depth= 2] . ( 11 sec) [ -47296.4266] [ 6334] [depth= 3] . ( 12 sec) [ -47288.4347] [ 6321] [depth= 12] . ( 12 sec) [ -47222.1344] [ 6322] [depth= 2] . ( 12 sec) [ -47129.9702] [ 6315] [depth= 2] . ( 12 sec) [ -46994.7469] [ 6313] [depth= 1] . ( 12 sec) [ -46712.4399] [ 6285] [depth= 7] . ( 12 sec) [ -46639.0885] [ 6281] [depth= 7] . ( 12 sec) [ -46369.0923] [ 6220] [depth= 17] . ( 13 sec) [ -45876.8861] [ 6153] [depth= 9] . ( 13 sec) [ -45756.1944] [ 6137] [depth= 15] . ( 13 sec) [ -45753.2305] [ 6137] [depth= 1] . ( 13 sec) [ -45743.7919] [ 6104] [depth= 12] . ( 13 sec) [ -45630.2652] [ 6104] [depth= 1] . ( 13 sec) [ -45301.5126] [ 6097] [depth= 1] . ( 14 sec) [ -44863.3210] [ 6040] [depth= 7] . ( 14 sec) [ -44807.4554] [ 6041] [depth= 1] . ( 14 sec) [ -44747.5353] [ 6033] [depth= 5] . ( 14 sec) [ -44746.9006] [ 6032] [depth= 8] . ( 14 sec) [ -44610.3087] [ 6012] [depth= 5] . ( 14 sec) [ -44601.0102] [ 6011] [depth= 1] . ( 15 sec) [ -44407.7009] [ 5969] [depth= 15] . ( 15 sec) [ -44120.3011] [ 5912] [depth= 19] . ( 15 sec) [ -44108.7288] [ 5913] [depth= 4] . ( 15 sec) [ -43747.8092] [ 5912] [depth= 8] . ( 15 sec) [ -43523.6304] [ 5868] [depth= 23] . ( 16 sec) [ -43047.5740] [ 5829] [depth= 7] . ( 16 sec) [ -43020.3035] [ 5838] [depth= 1] . ( 16 sec) [ -42803.7095] [ 5811] [depth= 1] . ( 16 sec) [ -42796.7458] [ 5812] [depth= 1] . ( 16 sec) [ -42292.2942] [ 5812] [depth= 12] . ( 16 sec) [ -42227.0140] [ 5802] [depth= 8] . ( 17 sec) [ -40983.0714] [ 5795] [depth= 2] . ( 17 sec) [ -40843.3733] [ 5768] [depth= 2] . ( 17 sec) [ -39696.1232] [ 5695] [depth= 9] . ( 17 sec) [ -39659.5540] [ 5695] [depth= 1] . ( 17 sec) [ -39659.3452] [ 5695] [depth= 1] . ( 17 sec) [ -38798.7165] [ 5638] [depth= 13] . ( 18 sec) [ -38774.9623] [ 5638] [depth= 1] . ( 18 sec) [ -38670.3751] [ 5634] [depth= 23] . ( 18 sec) [ -37984.7071] [ 5638] [depth= 18] . ( 18 sec) [ -37932.8245] [ 5628] [depth= 5] . ( 18 sec) [ -37632.6872] [ 5572] [depth= 15] . ( 19 sec) [ -37539.3971] [ 5568] [depth= 9] . ( 19 sec) [ -37034.7285] [ 5566] [depth= 2] . ( 19 sec) [ -35225.9626] [ 5492] [depth= 17] . ( 19 sec) [ -35197.3236] [ 5492] [depth= 2] . ( 19 sec) [ -34829.7906] [ 5464] [depth= 1] . ( 19 sec) [ -34756.3077] [ 5463] [depth= 1] . ( 19 sec) [ -34719.0705] [ 5461] [depth= 20] . ( 20 sec) [ -34495.4910] [ 5463] [depth= 15] . ( 20 sec) [ -34406.6560] [ 5463] [depth= 19] . ( 20 sec) [ -34389.9069] [ 5439] [depth= 3] . ( 20 sec) [ -34380.4167] [ 5439] [depth= 1] . ( 20 sec) [ -34034.7934] [ 5404] [depth= 6] . ( 21 sec) [ -33749.7361] [ 5330] [depth= 15] . ( 21 sec) [ -33332.5403] [ 5330] [depth= 4] . ( 21 sec) [ -33314.7501] [ 5321] [depth= 16] . ( 21 sec) [ -32962.3375] [ 5320] [depth= 1] . ( 21 sec) [ -32845.8481] [ 5284] [depth= 6] . ( 21 sec) [ -32084.6233] [ 5277] [depth= 3] . ( 21 sec) [ -32072.1882] [ 5308] [depth= 1] . ( 22 sec) [ -31661.3472] [ 5248] [depth= 11] . ( 22 sec) [ -31656.1144] [ 5247] [depth= 3] . ( 22 sec) [ -30991.3405] [ 5090] [depth= 18] . ( 22 sec) [ -30088.4233] [ 5076] [depth= 19] . ( 22 sec) [ -30079.5417] [ 5076] [depth= 1] . ( 23 sec) [ -29759.9524] [ 4997] [depth= 9] . ( 23 sec) [ -29714.7103] [ 4998] [depth= 1] . ( 23 sec) [ -29607.8350] [ 4980] [depth= 16] . ( 23 sec) [ -29253.6074] [ 4931] [depth= 16] . ( 23 sec) [ -29150.9710] [ 4918] [depth= 18] . ( 24 sec) [ -28985.8138] [ 4865] [depth= 2] . ( 24 sec) [ -28864.7964] [ 4850] [depth= 17] . ( 24 sec) [ -28263.1321] [ 4859] [depth= 7] . ( 24 sec) [ -27910.1045] [ 4804] [depth= 14] . ( 24 sec) [ -27461.4055] [ 4762] [depth= 6] . ( 24 sec) [ -27130.7205] [ 4751] [depth= 3] . ( 25 sec) [ -26853.5654] [ 4730] [depth= 8] . ( 25 sec) [ -26523.5262] [ 4656] [depth= 4] . ( 25 sec) [ -25841.9712] [ 4649] [depth= 12] . ( 25 sec) [ -25726.6725] [ 4625] [depth= 7] . ( 25 sec) [ -25696.3893] [ 4625] [depth= 2] . ( 25 sec) [ -25311.8476] [ 4577] [depth= 5] . ( 26 sec) [ -25095.4817] [ 4508] [depth= 18] . ( 26 sec) [ -25034.4445] [ 4506] [depth= 1] . ( 26 sec) [ -24905.7581] [ 4485] [depth= 16] . ( 26 sec) [ -24539.8676] [ 4448] [depth= 16] . ( 26 sec) [ -23577.4870] [ 4378] [depth= 11] . ( 27 sec) [ -23460.0421] [ 4351] [depth= 3] . ( 27 sec) [ -22936.5991] [ 4291] [depth= 15] . ( 27 sec) [ -22905.8132] [ 4289] [depth= 2] . ( 27 sec) [ -22810.6616] [ 4254] [depth= 5] . ( 27 sec) [ -22556.6353] [ 4250] [depth= 6] . ( 28 sec) [ -22547.0931] [ 4249] [depth= 3] . ( 28 sec) [ -22177.3797] [ 4219] [depth= 21] . ( 28 sec) [ -21823.4130] [ 4148] [depth= 14] . ( 29 sec) [ -21823.1488] [ 4165] [depth= 1] . ( 29 sec) [ -21799.5016] [ 4148] [depth= 1] . ( 29 sec) [ -21735.9531] [ 4148] [depth= 1] . ( 29 sec) [ -21704.3324] [ 4144] [depth= 14] . ( 29 sec) [ -21698.2541] [ 4144] [depth= 1] . ( 29 sec) [ -21431.5147] [ 4050] [depth= 13] . ( 30 sec) [ -21417.4842] [ 4077] [depth= 1] . ( 30 sec) [ -21226.2638] [ 4052] [depth= 10] . ( 30 sec) [ -21112.5170] [ 4031] [depth= 1] . ( 30 sec) [ -21040.8994] [ 3980] [depth= 11] . ( 30 sec) [ -20890.6914] [ 3945] [depth= 13] . ( 30 sec) [ -20803.2272] [ 3935] [depth= 7] . ( 31 sec) [ -20784.2864] [ 3932] [depth= 1] . ( 31 sec) [ -20565.6816] [ 3896] [depth= 14] . ( 31 sec) [ -20561.8640] [ 3895] [depth= 3] . ( 31 sec) [ -20403.7741] [ 3893] [depth= 13] . ( 31 sec) [ -20262.2369] [ 3896] [depth= 1] . ( 31 sec) [ -19994.9968] [ 3858] [depth= 9] . ( 32 sec) [ -19988.0804] [ 3858] [depth= 1] . ( 32 sec) [ -19976.7099] [ 3856] [depth= 2] . ( 32 sec) [ -19829.9381] [ 3810] [depth= 9] . ( 32 sec) [ -19628.0314] [ 3762] [depth= 24] . ( 32 sec) [ -19619.4215] [ 3762] [depth= 1] . ( 32 sec) [ -19603.0446] [ 3761] [depth= 3] . ( 33 sec) [ -19486.8021] [ 3724] [depth= 20] . ( 33 sec) [ -19446.5434] [ 3673] [depth= 12] . ( 33 sec) [ -19387.3847] [ 3666] [depth= 2] . ( 33 sec) [ -19174.6839] [ 3615] [depth= 21] . ( 33 sec) [ -19168.4364] [ 3615] [depth= 11] . ( 33 sec) [ -18985.3607] [ 3615] [depth= 1] . ( 34 sec) [ -18830.7692] [ 3579] [depth= 7] . ( 34 sec) [ -18800.9815] [ 3543] [depth= 12] . ( 34 sec) [ -18562.8479] [ 3535] [depth= 1] . ( 34 sec) [ -18435.3306] [ 3527] [depth= 13] . ( 34 sec) [ -18277.9841] [ 3500] [depth= 2] . ( 35 sec) [ -18271.0452] [ 3499] [depth= 2] . ( 35 sec) [ -18260.2715] [ 3499] [depth= 3] . ( 35 sec) [ -18245.7630] [ 3499] [depth= 7] . ( 35 sec) [ -18234.7045] [ 3499] [depth= 6] . ( 35 sec) [ -18201.5914] [ 3548] [depth= 1] . ( 35 sec) [ -18199.5728] [ 3548] [depth= 2] . ( 36 sec) [ -18074.8866] [ 3550] [depth= 3] . ( 36 sec) [ -18070.9185] [ 3550] [depth= 1] . ( 36 sec) [ -18017.2073] [ 3546] [depth= 1] . ( 36 sec) [ -17916.2216] [ 3544] [depth= 7] . ( 36 sec) [ -17768.6583] [ 3522] [depth= 3] . ( 36 sec) [ -17614.5453] [ 3522] [depth= 1] . ( 36 sec) [ -17599.7825] [ 3520] [depth= 2] . ( 37 sec) [ -17358.1628] [ 3457] [depth= 6] . ( 37 sec) [ -17344.5359] [ 3450] [depth= 11] . ( 37 sec) [ -17336.2717] [ 3450] [depth= 1] . ( 37 sec) [ -17329.8755] [ 3449] [depth= 1] . ( 37 sec) [ -17171.1316] [ 3439] [depth= 13] . ( 38 sec) [ -17083.3986] [ 3430] [depth= 3] . ( 38 sec) [ -17051.8695] [ 3428] [depth= 1] . ( 38 sec) [ -17030.0130] [ 3431] [depth= 3] . ( 38 sec) [ -16973.8900] [ 3399] [depth= 3] . ( 38 sec) [ -16840.5701] [ 3397] [depth= 4] . ( 39 sec) [ -16792.3551] [ 3372] [depth= 2] . ( 39 sec) [ -16693.9277] [ 3371] [depth= 1] . ( 39 sec) [ -16675.1500] [ 3369] [depth= 1] . ( 39 sec) [ -16568.2093] [ 3361] [depth= 8] . ( 39 sec) [ -16368.1851] [ 3330] [depth= 13] . ( 39 sec) [ -16149.3937] [ 3281] [depth= 11] . ( 40 sec) [ -16029.3102] [ 3217] [depth= 10] . ( 40 sec) [ -15818.1936] [ 3134] [depth= 8] . ( 40 sec) [ -15769.9726] [ 3131] [depth= 4] . ( 40 sec) [ -15382.3750] [ 3092] [depth= 19] . ( 40 sec) [ -15326.8001] [ 3096] [depth= 1] . ( 40 sec) [ -15289.7332] [ 3083] [depth= 22] . ( 41 sec) [ -15138.5424] [ 3048] [depth= 3] . ( 41 sec) [ -14999.5038] [ 3000] [depth= 8] . ( 41 sec) [ -14978.6377] [ 2996] [depth= 1] . ( 41 sec) [ -14918.3011] [ 2988] [depth= 3] . ( 41 sec) [ -14882.6488] [ 2978] [depth= 2] . ( 41 sec) [ -14879.8496] [ 2988] [depth= 1] . ( 42 sec) [ -14612.1362] [ 2933] [depth= 19] . ( 42 sec) [ -14547.6787] [ 2890] [depth= 9] . ( 42 sec) [ -14315.4293] [ 2845] [depth= 8] . ( 42 sec) [ -14295.0335] [ 2826] [depth= 4] . ( 42 sec) [ -14284.0407] [ 2822] [depth= 8] . ( 43 sec) [ -14275.9089] [ 2822] [depth= 2] . ( 43 sec) [ -14262.6970] [ 2822] [depth= 9] . ( 43 sec) [ -14202.5117] [ 2815] [depth= 2] . ( 43 sec) [ -14102.6976] [ 2805] [depth= 12] . ( 43 sec) [ -14076.3809] [ 2775] [depth= 1] . ( 43 sec) [ -14047.3621] [ 2775] [depth= 1] . ( 44 sec) [ -14032.5773] [ 2774] [depth= 15] . ( 44 sec) [ -13983.5974] [ 2761] [depth= 10] . ( 44 sec) [ -13878.1384] [ 2742] [depth= 1] . ( 44 sec) [ -13873.2541] [ 2742] [depth= 3] . ( 44 sec) [ -13867.6868] [ 2743] [depth= 10] . ( 45 sec) [ -13823.4733] [ 2742] [depth= 4] . ( 45 sec) [ -13804.4642] [ 2736] [depth= 1] . ( 45 sec) [ -13799.2946] [ 2735] [depth= 2] . ( 45 sec) [ -13780.8113] [ 2722] [depth= 2] . ( 45 sec) [ -13776.5047] [ 2722] [depth= 1] . ( 45 sec) [ -13768.4592] [ 2721] [depth= 6] . ( 46 sec) [ -13768.3974] [ 2721] [depth= 19] . ( 46 sec) [ -13765.0393] [ 2721] [depth= 5] . ( 46 sec) [ -13642.1721] [ 2699] [depth= 8] . ( 46 sec) [ -13641.3662] [ 2699] [depth= 1] . ( 46 sec) [ -13531.7974] [ 2667] [depth= 15] . ( 47 sec) [ -13317.8758] [ 2591] [depth= 11] . ( 47 sec) [ -13259.1619] [ 2585] [depth= 1] . ( 47 sec) [ -13244.9923] [ 2585] [depth= 4] . ( 47 sec) [ -13216.7211] [ 2584] [depth= 1] . ( 47 sec) [ -13206.0492] [ 2584] [depth= 1] . ( 47 sec) [ -13204.6830] [ 2587] [depth= 4] . ( 48 sec) [ -13173.3136] [ 2583] [depth= 1] . ( 48 sec) [ -13163.2449] [ 2583] [depth= 1] . ( 48 sec) [ -13026.1089] [ 2576] [depth= 11] . ( 49 sec) [ -12970.7504] [ 2552] [depth= 13] . ( 49 sec) [ -12970.3418] [ 2553] [depth= 3] . ( 49 sec) [ -12853.2801] [ 2536] [depth= 4] . ( 49 sec) [ -12852.4584] [ 2536] [depth= 1] . ( 49 sec) [ -12825.4157] [ 2526] [depth= 1] . ( 49 sec) [ -12818.2279] [ 2524] [depth= 12] . ( 50 sec) [ -12790.6114] [ 2523] [depth= 2] . ( 50 sec) [ -12768.6924] [ 2514] [depth= 1] . ( 50 sec) [ -12758.1057] [ 2516] [depth= 1] . ( 50 sec) [ -12757.0874] [ 2516] [depth= 1] . ( 50 sec) [ -12709.4369] [ 2478] [depth= 1] . ( 50 sec) [ -12631.7291] [ 2441] [depth= 9] . ( 51 sec) [ -12595.2029] [ 2433] [depth= 4] . ( 51 sec) [ -12542.2897] [ 2426] [depth= 2] . ( 51 sec) [ -12534.8937] [ 2423] [depth= 1] . ( 51 sec) [ -12482.2507] [ 2424] [depth= 4] . ( 51 sec) [ -12372.2145] [ 2382] [depth= 4] . ( 52 sec) [ -12367.9413] [ 2382] [depth= 6] . ( 52 sec) [ -12346.9518] [ 2382] [depth= 1] . ( 52 sec) [ -12329.4764] [ 2371] [depth= 19] . ( 53 sec) [ -12329.3465] [ 2371] [depth= 5] . ( 53 sec) [ -12318.2839] [ 2371] [depth= 2] . ( 53 sec) [ -12291.2487] [ 2371] [depth= 1] . ( 53 sec) [ -12288.3005] [ 2371] [depth= 2] . ( 53 sec) [ -12286.9861] [ 2371] [depth= 3] . ( 54 sec) [ -12274.2097] [ 2371] [depth= 1] . ( 54 sec) [ -12263.3661] [ 2371] [depth= 1] . ( 54 sec) [ -12255.0636] [ 2370] [depth= 7] . ( 54 sec) [ -12254.8640] [ 2370] [depth= 2] . ( 55 sec) [ -12254.8037] [ 2370] [depth= 2] . ( 55 sec) [ -12254.7249] [ 2371] [depth= 6] . ( 55 sec) [ -12249.0642] [ 2369] [depth= 1] . ( 55 sec) [ -12245.5305] [ 2369] [depth= 1] . ( 56 sec) [ -12097.9509] [ 2341] [depth= 14] . ( 56 sec) [ -12076.1409] [ 2341] [depth= 1] . ( 56 sec) [ -12072.4112] [ 2340] [depth= 1] . ( 56 sec) [ -12072.1320] [ 2340] [depth= 1] . ( 56 sec) [ -12071.7590] [ 2340] [depth= 4] . ( 56 sec) [ -12067.0961] [ 2340] [depth= 1] . ( 57 sec) [ -12065.1066] [ 2340] [depth= 1] . ( 57 sec) [ -12055.3412] [ 2338] [depth= 2] . ( 58 sec) [ -12047.7809] [ 2338] [depth= 2] . ( 58 sec) [ -12046.2001] [ 2338] [depth= 2] . ( 58 sec) [ -12043.4689] [ 2337] [depth= 2] . ( 58 sec) [ -12034.9528] [ 2338] [depth= 3] . ( 58 sec) [ -12029.6884] [ 2338] [depth= 2] . ( 59 sec) [ -12028.1190] [ 2338] [depth= 1] . ( 59 sec) [ -12027.6198] [ 2338] [depth= 1] . ( 59 sec) [ -12027.6058] [ 2338] [depth= 4] . ( 59 sec) [ -11884.8728] [ 2289] [depth= 1] . ( 60 sec) [ -11882.9731] [ 2289] [depth= 1] . ( 60 sec) [ -11879.0875] [ 2289] [depth= 1] . ( 60 sec) [ -11858.6858] [ 2289] [depth= 1] . ( 61 sec) [ -11713.1483] [ 2251] [depth= 14] . ( 61 sec) [ -11675.1132] [ 2242] [depth= 5] . ( 61 sec) [ -11660.3245] [ 2234] [depth= 2] . ( 61 sec) [ -11657.1672] [ 2234] [depth= 1] . ( 61 sec) [ -11650.0613] [ 2233] [depth= 3] . ( 63 sec) [ -11330.7093] [Branch lengths ] . ( 72 sec) [ -11273.4241] [GTR parameters ] . ( 73 sec) [ -11177.1507] [Alpha ][ 0.262054] . ( 73 sec) [ -11168.7187] [ 2222] [depth= 9] . ( 73 sec) [ -11167.3975] [ 2222] [depth= 2] . ( 74 sec) [ -11167.3758] [ 2222] [depth= 5] . ( 74 sec) [ -11164.6734] [ 2222] [depth= 7] . ( 75 sec) [ -11157.9875] [ 2218] [depth= 2] . ( 75 sec) [ -11157.9664] [ 2218] [depth= 1] . ( 75 sec) [ -11157.9105] [ 2218] [depth= 1] . ( 76 sec) [ -11153.1788] [ 2217] [depth= 1] . ( 76 sec) [ -11153.0958] [ 2217] [depth= 1] . ( 76 sec) [ -11153.0533] [ 2217] [depth= 1] . ( 77 sec) [ -11151.6116] [ 2221] [depth= 3] . ( 78 sec) [ -11150.8262] [ 2217] [depth= 3] . ( 78 sec) [ -11150.4941] [ 2217] [depth= 4] . ( 78 sec) [ -11150.4409] [ 2217] [depth= 1] . ( 79 sec) [ -11145.6879] [ 2215] [depth= 4] . ( 79 sec) [ -11099.9695] [ 2186] [depth= 16] . ( 79 sec) [ -11099.2308] [ 2188] [depth= 1] . ( 79 sec) [ -11085.0258] [ 2178] [depth= 4] . ( 82 sec) [ -11084.9368] [ 2178] [depth= 3] . ( 83 sec) [ -11084.7175] [ 2178] [depth= 1] . ( 85 sec) [ -11084.7063] [ 2178] [depth= 1] . ( 86 sec) [ -11084.3784] [ 2178] [depth= 1] . ( 86 sec) [ -11083.6986] [ 2164] [depth= 10] . ( 87 sec) [ -11073.5334] [ 2159] [depth= 1] . ( 87 sec) [ -11073.0698] [ 2159] [depth= 2] . ( 87 sec) [ -11065.6715] [ 2144] [depth= 7] . ( 88 sec) [ -11064.2991] [ 2144] [depth= 1] . ( 88 sec) [ -11063.4537] [ 2144] [depth= 5] . ( 88 sec) [ -11047.2218] [ 2134] [depth= 2] . ( 89 sec) [ -11032.5975] [ 2116] [depth= 3] . ( 89 sec) [ -11032.5781] [ 2116] [depth= 1] . ( 90 sec) [ -10980.9589] [ 2092] [depth= 2] . ( 91 sec) [ -10956.3380] [ 2089] [depth= 1] . ( 91 sec) [ -10954.0918] [ 2089] [depth= 1] . ( 91 sec) [ -10951.1880] [ 2089] [depth= 1] . ( 91 sec) [ -10949.1899] [ 2087] [depth= 1] . ( 94 sec) [ -10948.9806] [ 2087] [depth= 1] . ( 94 sec) [ -10926.6316] [ 2075] [depth= 3] . ( 95 sec) [ -10914.2703] [ 2069] [depth= 1] . ( 95 sec) [ -10908.2277] [ 2068] [depth= 3] . ( 95 sec) [ -10908.1353] [ 2068] [depth= 2] . ( 97 sec) [ -10903.0026] [ 2068] [depth= 1] . ( 97 sec) [ -10902.6772] [ 2068] [depth= 3] . ( 98 sec) [ -10886.4341] [ 2066] [depth= 2] . ( 98 sec) [ -10885.7087] [ 2066] [depth= 1] . ( 98 sec) [ -10885.6822] [ 2066] [depth= 1] . ( 99 sec) [ -10878.7622] [ 2065] [depth= 10] . ( 99 sec) [ -10878.7409] [ 2065] [depth= 2] . ( 101 sec) [ -10878.5335] [ 2065] [depth= 1] . ( 101 sec) [ -10878.5168] [ 2065] [depth= 1] . ( 103 sec) [ -10857.3389] [ 2055] [depth= 4] . ( 103 sec) [ -10848.0771] [ 2044] [depth= 6] . ( 104 sec) [ -10847.4759] [ 2044] [depth= 1] . ( 105 sec) [ -10847.3450] [ 2044] [depth= 3] . ( 106 sec) [ -10835.6966] [ 2042] [depth= 3] . ( 107 sec) [ -10835.4288] [ 2042] [depth= 1] . ( 108 sec) [ -10812.5870] [ 2036] [depth= 1] . ( 110 sec) [ -10812.4440] [ 2036] [depth= 5] . ( 111 sec) [ -10812.1454] [ 2036] [depth= 1] . ( 112 sec) [ -10812.1201] [ 2036] [depth= 2] . ( 114 sec) [ -10802.8782] [ 2031] [depth= 1] . ( 114 sec) [ -10797.5767] [ 2029] [depth= 1] . ( 115 sec) [ -10797.5602] [ 2029] [depth= 1] . ( 115 sec) [ -10797.0614] [ 2028] [depth= 2] . ( 116 sec) [ -10771.7535] [ 2015] [depth= 6] . ( 117 sec) [ -10771.6627] [ 2015] [depth= 2] . ( 119 sec) [ -10771.2569] [ 2015] [depth= 1] . ( 119 sec) [ -10770.3896] [ 2015] [depth= 1] . ( 120 sec) [ -10769.7371] [ 2014] [depth= 1] . ( 120 sec) [ -10769.3591] [ 2014] [depth= 4] . ( 122 sec) [ -10769.0836] [ 2014] [depth= 8] . ( 122 sec) [ -10769.0608] [ 2014] [depth= 5] . ( 123 sec) [ -10768.9744] [ 2014] [depth= 7] . ( 123 sec) [ -10768.9072] [ 2014] [depth= 2] . ( 128 sec) [ -10758.5135] [ 2011] [depth= 1] . ( 129 sec) [ -10758.5007] [ 2011] [depth= 3] . ( 130 sec) [ -10753.6110] [ 2010] [depth= 4] . ( 130 sec) [ -10752.4043] [ 2015] [depth= 1] . ( 131 sec) [ -10745.1657] [ 2014] [depth= 1] . ( 131 sec) [ -10744.5957] [ 2014] [depth= 1] . ( 132 sec) [ -10743.6533] [ 2013] [depth= 1] . ( 132 sec) [ -10743.6307] [ 2013] [depth= 3] . ( 133 sec) [ -10739.0578] [ 2016] [depth= 1] . ( 133 sec) [ -10738.7646] [ 2015] [depth= 2] . ( 133 sec) [ -10730.8825] [ 1996] [depth= 11] . ( 133 sec) [ -10730.6341] [ 1996] [depth= 1] . ( 135 sec) [ -10730.6160] [ 1996] [depth= 2] . ( 135 sec) [ -10723.7319] [ 1992] [depth= 3] . ( 138 sec) [ -10723.0618] [ 1992] [depth= 1] . ( 139 sec) [ -10722.9182] [ 1992] [depth= 1] . ( 145 sec) [ -10718.3693] [ 1991] [depth= 1] . ( 148 sec) [ -10718.3491] [ 1991] [depth= 1] . ( 150 sec) [ -10718.3161] [ 1991] [depth= 1] . ( 150 sec) [ -10716.2725] [ 1991] [depth= 1] . ( 152 sec) [ -10680.2120] [Branch lengths ] . ( 162 sec) [ -10678.5589] [GTR parameters ] . ( 163 sec) [ -10678.1523] [Alpha ][ 0.273210] . ( 169 sec) [ -10672.0383] [ 1993] [depth= 2] . ( 175 sec) [ -10671.9583] [ 1993] [depth= 1] . ( 179 sec) [ -10670.3640] [ 1993] [depth= 5] . ( 180 sec) [ -10670.2279] [ 1997] [depth= 2] . ( 182 sec) [ -10670.1969] [ 1997] [depth= 5] . ( 188 sec) [ -10670.0266] [ 1997] [depth= 2] . ( 191 sec) [ -10669.1208] [ 1994] [depth= 1] . ( 195 sec) [ -10669.1053] [ 1994] [depth= 1] . ( 198 sec) [ -10669.0624] [ 1994] [depth= 1] . ( 210 sec) [ -10669.0508] [ 1994] [depth= 1] . ( 217 sec) [ -10668.2601] [ 1992] [depth= 1] . ( 222 sec) [ -10665.6609] [ 1991] [depth= 4] . ( 233 sec) [ -10665.6469] [ 1991] [depth= 1] . ( 245 sec) [ -10665.6353] [ 1991] [depth= 1] . ( 253 sec) [ -10665.6000] [ 1991] [depth= 1] . ( 255 sec) [ -10661.0749] [Branch lengths ] . ( 257 sec) [ -10661.0274] [GTR parameters ] . ( 257 sec) [ -10661.0170] [Alpha ][ 0.271245] . ( 308 sec) [ -10660.9391] [ 1991] [depth= 1] . ( 351 sec) [ -10660.4201] [Branch lengths ] . ( 353 sec) [ -10660.4191] [GTR parameters ] . ( 354 sec) [ -10660.4188] [Alpha ][ 0.271519] . ( 442 sec) [ -10660.3992] [ 1990] [depth= 1] . ( 507 sec) [ -10660.2886] [Branch lengths ] . ( 509 sec) [ -10660.2882] [GTR parameters ] . ( 509 sec) [ -10660.2882] [Alpha ][ 0.271519] . ( 509 sec) [ -10660.2882] [Topology ] . ( 512 sec) [ -10660.2191] [Topology ] . ( 515 sec) [ -10659.8297] [Topology ] . ( 518 sec) [ -10658.3585] [Topology ] . ( 521 sec) [ -10656.8671] [Topology ] . ( 524 sec) [ -10656.7400] [Topology ] . ( 527 sec) [ -10656.7132] [Topology ] . ( 528 sec) [ -10656.7132] [GTR parameters ] . ( 529 sec) [ -10656.7132] [Alpha ][ 0.271519] . ( 529 sec) [ -10656.7132] [Topology ] . ( 532 sec) [ -10656.7068] [Topology ] . ( 535 sec) [ -10656.7052] [Topology ] . ( 538 sec) [ -10656.7048] [Topology ] . ( 540 sec) [ -10656.7045] [GTR parameters ] . ( 540 sec) [ -10656.7045] [Alpha ][ 0.271519] . ( 540 sec) [ -10656.7045] [Topology ] . ( 543 sec) [ -10656.7044] [Topology ] . ( 545 sec) [ -10656.7042] [GTR parameters ] . ( 545 sec) [ -10656.7042] [Alpha ][ 0.271519] . Checking for NNIs, optimizing five branches... . ( 568 sec) [ -10656.6178] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -10656.617809. . [Random start 5/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 4 sec) [ -60134.8217] [GTR parameters ] . ( 4 sec) [ -58724.1723] [Alpha ][ 0.500960] . ( 5 sec) [ -58521.6490] [ 7442] [depth= 16] . ( 5 sec) [ -57857.5270] [ 7443] [depth= 1] . ( 5 sec) [ -57222.6998] [ 7410] [depth= 8] . ( 5 sec) [ -57134.6213] [ 7412] [depth= 1] . ( 5 sec) [ -56730.6434] [ 7389] [depth= 11] . ( 6 sec) [ -56528.5907] [ 7350] [depth= 2] . ( 6 sec) [ -56444.5223] [ 7346] [depth= 9] . ( 6 sec) [ -56334.3416] [ 7323] [depth= 1] . ( 6 sec) [ -56219.1537] [ 7318] [depth= 10] . ( 6 sec) [ -55633.8357] [ 7274] [depth= 5] . ( 6 sec) [ -55380.4341] [ 7271] [depth= 10] . ( 6 sec) [ -55371.0982] [ 7269] [depth= 1] . ( 7 sec) [ -55167.5951] [ 7266] [depth= 6] . ( 7 sec) [ -55148.8244] [ 7255] [depth= 2] . ( 7 sec) [ -55007.6815] [ 7248] [depth= 10] . ( 7 sec) [ -54951.3382] [ 7246] [depth= 4] . ( 7 sec) [ -54479.3958] [ 7246] [depth= 5] . ( 7 sec) [ -54230.3071] [ 7216] [depth= 16] . ( 8 sec) [ -54174.6733] [ 7212] [depth= 1] . ( 8 sec) [ -54104.5072] [ 7168] [depth= 5] . ( 8 sec) [ -53845.1900] [ 7167] [depth= 1] . ( 8 sec) [ -53262.0833] [ 7160] [depth= 14] . ( 8 sec) [ -53165.6553] [ 7171] [depth= 1] . ( 8 sec) [ -53104.0327] [ 7164] [depth= 1] . ( 8 sec) [ -52933.5731] [ 7178] [depth= 1] . ( 9 sec) [ -52660.5304] [ 7160] [depth= 7] . ( 9 sec) [ -52596.1896] [ 7133] [depth= 15] . ( 9 sec) [ -52347.0828] [ 7074] [depth= 6] . ( 9 sec) [ -51930.5488] [ 7006] [depth= 20] . ( 9 sec) [ -51660.7366] [ 6918] [depth= 5] . ( 10 sec) [ -51214.0844] [ 6810] [depth= 14] . ( 10 sec) [ -50814.6222] [ 6763] [depth= 5] . ( 10 sec) [ -50587.1156] [ 6764] [depth= 22] . ( 10 sec) [ -50119.8995] [ 6694] [depth= 20] . ( 10 sec) [ -49907.4965] [ 6690] [depth= 13] . ( 10 sec) [ -49780.6441] [ 6689] [depth= 12] . ( 11 sec) [ -48759.9806] [ 6667] [depth= 14] . ( 11 sec) [ -48740.5490] [ 6666] [depth= 14] . ( 11 sec) [ -48557.0200] [ 6632] [depth= 4] . ( 11 sec) [ -48132.3812] [ 6631] [depth= 5] . ( 11 sec) [ -47548.9657] [ 6584] [depth= 3] . ( 12 sec) [ -46860.1047] [ 6580] [depth= 9] . ( 12 sec) [ -46557.2171] [ 6579] [depth= 1] . ( 12 sec) [ -46487.2712] [ 6579] [depth= 5] . ( 12 sec) [ -46396.2989] [ 6565] [depth= 13] . ( 12 sec) [ -45844.6845] [ 6501] [depth= 7] . ( 12 sec) [ -45722.6738] [ 6493] [depth= 15] . ( 12 sec) [ -45666.9079] [ 6491] [depth= 3] . ( 13 sec) [ -45455.7724] [ 6436] [depth= 16] . ( 13 sec) [ -44629.1431] [ 6425] [depth= 13] . ( 13 sec) [ -44601.1391] [ 6425] [depth= 1] . ( 13 sec) [ -44359.1747] [ 6397] [depth= 16] . ( 13 sec) [ -44328.2865] [ 6397] [depth= 13] . ( 13 sec) [ -44205.2063] [ 6359] [depth= 6] . ( 14 sec) [ -43837.3513] [ 6347] [depth= 4] . ( 14 sec) [ -43597.8595] [ 6306] [depth= 9] . ( 14 sec) [ -43567.9554] [ 6307] [depth= 16] . ( 15 sec) [ -43554.9247] [ 6306] [depth= 1] . ( 15 sec) [ -43496.5925] [ 6269] [depth= 11] . ( 15 sec) [ -43233.9886] [ 6276] [depth= 1] . ( 15 sec) [ -43182.4079] [ 6273] [depth= 13] . ( 15 sec) [ -42623.3774] [ 6263] [depth= 15] . ( 15 sec) [ -42564.8846] [ 6258] [depth= 1] . ( 16 sec) [ -42256.2448] [ 6214] [depth= 9] . ( 16 sec) [ -42064.4370] [ 6180] [depth= 9] . ( 16 sec) [ -40851.0658] [ 6055] [depth= 8] . ( 16 sec) [ -40433.9481] [ 6001] [depth= 12] . ( 16 sec) [ -40308.1102] [ 6002] [depth= 1] . ( 17 sec) [ -39985.8539] [ 5948] [depth= 14] . ( 17 sec) [ -38153.7288] [ 5906] [depth= 11] . ( 17 sec) [ -37142.0787] [ 5830] [depth= 20] . ( 17 sec) [ -36931.8827] [ 5838] [depth= 1] . ( 17 sec) [ -36558.5574] [ 5782] [depth= 19] . ( 18 sec) [ -36269.3134] [ 5736] [depth= 16] . ( 18 sec) [ -36248.7922] [ 5735] [depth= 2] . ( 18 sec) [ -35828.9631] [ 5692] [depth= 2] . ( 18 sec) [ -35599.7492] [ 5689] [depth= 11] . ( 19 sec) [ -35198.4647] [ 5635] [depth= 16] . ( 19 sec) [ -34356.9894] [ 5535] [depth= 12] . ( 19 sec) [ -34061.3387] [ 5473] [depth= 16] . ( 19 sec) [ -34045.9873] [ 5472] [depth= 14] . ( 19 sec) [ -33757.3829] [ 5461] [depth= 14] . ( 20 sec) [ -33729.5348] [ 5461] [depth= 1] . ( 20 sec) [ -33572.6964] [ 5465] [depth= 13] . ( 20 sec) [ -33380.6829] [ 5464] [depth= 1] . ( 20 sec) [ -33356.2250] [ 5464] [depth= 2] . ( 20 sec) [ -33356.1559] [ 5464] [depth= 2] . ( 20 sec) [ -33043.8607] [ 5377] [depth= 11] . ( 20 sec) [ -33015.6639] [ 5377] [depth= 3] . ( 21 sec) [ -32848.4385] [ 5305] [depth= 15] . ( 21 sec) [ -32774.0653] [ 5286] [depth= 8] . ( 21 sec) [ -32409.4614] [ 5285] [depth= 7] . ( 21 sec) [ -32130.2269] [ 5213] [depth= 12] . ( 21 sec) [ -32127.3716] [ 5213] [depth= 8] . ( 22 sec) [ -31791.4596] [ 5272] [depth= 1] . ( 22 sec) [ -30842.7692] [ 5227] [depth= 6] . ( 22 sec) [ -30418.0509] [ 5188] [depth= 8] . ( 22 sec) [ -30317.3494] [ 5183] [depth= 1] . ( 22 sec) [ -30228.3678] [ 5182] [depth= 7] . ( 22 sec) [ -30220.7404] [ 5182] [depth= 2] . ( 23 sec) [ -30220.6619] [ 5182] [depth= 12] . ( 23 sec) [ -29934.8809] [ 5144] [depth= 8] . ( 23 sec) [ -29705.7578] [ 5087] [depth= 11] . ( 23 sec) [ -29704.3809] [ 5085] [depth= 1] . ( 23 sec) [ -29662.3804] [ 5079] [depth= 18] . ( 23 sec) [ -29327.6663] [ 5084] [depth= 1] . ( 24 sec) [ -28912.5627] [ 5064] [depth= 13] . ( 24 sec) [ -28361.1090] [ 5030] [depth= 6] . ( 24 sec) [ -28223.1667] [ 4990] [depth= 6] . ( 24 sec) [ -28194.3892] [ 4953] [depth= 15] . ( 24 sec) [ -27299.6744] [ 4853] [depth= 16] . ( 25 sec) [ -27187.1272] [ 4851] [depth= 10] . ( 25 sec) [ -27142.4247] [ 4779] [depth= 1] . ( 25 sec) [ -27065.2511] [ 4745] [depth= 6] . ( 25 sec) [ -27005.1921] [ 4745] [depth= 1] . ( 25 sec) [ -26890.5715] [ 4709] [depth= 4] . ( 25 sec) [ -26821.6391] [ 4706] [depth= 1] . ( 26 sec) [ -26806.5947] [ 4649] [depth= 12] . ( 26 sec) [ -26800.8860] [ 4645] [depth= 1] . ( 26 sec) [ -26176.7071] [ 4646] [depth= 1] . ( 26 sec) [ -25599.7640] [ 4527] [depth= 9] . ( 26 sec) [ -25510.0346] [ 4527] [depth= 1] . ( 27 sec) [ -25433.2882] [ 4527] [depth= 1] . ( 27 sec) [ -25432.4818] [ 4527] [depth= 1] . ( 27 sec) [ -25370.8932] [ 4528] [depth= 1] . ( 27 sec) [ -25035.9488] [ 4495] [depth= 6] . ( 27 sec) [ -25025.5126] [ 4495] [depth= 1] . ( 27 sec) [ -24921.7947] [ 4467] [depth= 18] . ( 28 sec) [ -24920.1513] [ 4467] [depth= 1] . ( 28 sec) [ -24662.1305] [ 4403] [depth= 13] . ( 28 sec) [ -24643.4330] [ 4397] [depth= 3] . ( 28 sec) [ -24626.1202] [ 4392] [depth= 4] . ( 28 sec) [ -24443.9474] [ 4378] [depth= 3] . ( 28 sec) [ -24365.5609] [ 4376] [depth= 2] . ( 29 sec) [ -24358.8283] [ 4349] [depth= 10] . ( 29 sec) [ -24005.3141] [ 4342] [depth= 3] . ( 29 sec) [ -23657.1332] [ 4303] [depth= 6] . ( 29 sec) [ -23640.9407] [ 4294] [depth= 1] . ( 29 sec) [ -23372.5154] [ 4229] [depth= 6] . ( 29 sec) [ -23070.3284] [ 4176] [depth= 5] . ( 30 sec) [ -22998.4379] [ 4162] [depth= 1] . ( 30 sec) [ -22962.3213] [ 4162] [depth= 1] . ( 30 sec) [ -22894.3949] [ 4128] [depth= 10] . ( 30 sec) [ -22844.5659] [ 4128] [depth= 1] . ( 30 sec) [ -22640.2824] [ 4110] [depth= 10] . ( 31 sec) [ -22321.5589] [ 4079] [depth= 14] . ( 31 sec) [ -22275.9171] [ 4070] [depth= 1] . ( 31 sec) [ -22260.3064] [ 4070] [depth= 1] . ( 31 sec) [ -21855.1538] [ 4065] [depth= 8] . ( 31 sec) [ -21839.1728] [ 4060] [depth= 1] . ( 32 sec) [ -21839.1600] [ 4060] [depth= 10] . ( 32 sec) [ -21837.7970] [ 4060] [depth= 9] . ( 32 sec) [ -21667.6186] [ 4041] [depth= 11] . ( 32 sec) [ -21665.2518] [ 4041] [depth= 2] . ( 32 sec) [ -21603.4334] [ 4037] [depth= 12] . ( 32 sec) [ -21603.2613] [ 4037] [depth= 1] . ( 33 sec) [ -21598.7670] [ 4037] [depth= 1] . ( 33 sec) [ -21459.3481] [ 3927] [depth= 9] . ( 33 sec) [ -21453.4877] [ 3926] [depth= 1] . ( 33 sec) [ -21452.1834] [ 3927] [depth= 1] . ( 33 sec) [ -21416.1930] [ 3928] [depth= 9] . ( 34 sec) [ -21197.9032] [ 3931] [depth= 3] . ( 34 sec) [ -20878.7651] [ 3886] [depth= 11] . ( 34 sec) [ -20771.8448] [ 3886] [depth= 6] . ( 34 sec) [ -20698.7997] [ 3880] [depth= 15] . ( 34 sec) [ -20576.9234] [ 3874] [depth= 3] . ( 34 sec) [ -20393.3902] [ 3816] [depth= 6] . ( 34 sec) [ -20318.9469] [ 3815] [depth= 1] . ( 35 sec) [ -20137.8150] [ 3778] [depth= 16] . ( 35 sec) [ -20127.8817] [ 3780] [depth= 1] . ( 35 sec) [ -19813.8522] [ 3761] [depth= 10] . ( 35 sec) [ -19802.2986] [ 3761] [depth= 1] . ( 36 sec) [ -19726.0971] [ 3716] [depth= 14] . ( 36 sec) [ -19480.7541] [ 3699] [depth= 13] . ( 36 sec) [ -19410.8407] [ 3700] [depth= 9] . ( 36 sec) [ -19265.3087] [ 3665] [depth= 13] . ( 36 sec) [ -19217.8350] [ 3665] [depth= 2] . ( 36 sec) [ -19210.1338] [ 3666] [depth= 3] . ( 37 sec) [ -19078.0931] [ 3614] [depth= 22] . ( 37 sec) [ -19002.5985] [ 3595] [depth= 14] . ( 37 sec) [ -18992.5700] [ 3595] [depth= 1] . ( 37 sec) [ -18992.0647] [ 3595] [depth= 1] . ( 37 sec) [ -18975.6364] [ 3593] [depth= 6] . ( 38 sec) [ -18973.8412] [ 3593] [depth= 1] . ( 38 sec) [ -18965.5793] [ 3594] [depth= 1] . ( 38 sec) [ -18960.9577] [ 3593] [depth= 2] . ( 38 sec) [ -18782.7607] [ 3540] [depth= 16] . ( 38 sec) [ -18769.7435] [ 3539] [depth= 1] . ( 38 sec) [ -18768.3638] [ 3539] [depth= 1] . ( 39 sec) [ -18607.9130] [ 3475] [depth= 8] . ( 39 sec) [ -18603.7950] [ 3471] [depth= 8] . ( 39 sec) [ -18568.2272] [ 3462] [depth= 2] . ( 40 sec) [ -18556.9968] [ 3461] [depth= 10] . ( 40 sec) [ -17955.5898] [ 3451] [depth= 13] . ( 40 sec) [ -17706.4605] [ 3437] [depth= 21] . ( 40 sec) [ -17600.1339] [ 3405] [depth= 7] . ( 40 sec) [ -17582.2104] [ 3405] [depth= 13] . ( 41 sec) [ -17580.8470] [ 3404] [depth= 10] . ( 41 sec) [ -17513.8094] [ 3402] [depth= 2] . ( 41 sec) [ -17488.6951] [ 3402] [depth= 23] . ( 41 sec) [ -17442.5834] [ 3372] [depth= 26] . ( 41 sec) [ -17441.1343] [ 3372] [depth= 1] . ( 41 sec) [ -17402.3399] [ 3370] [depth= 21] . ( 42 sec) [ -17400.1519] [ 3372] [depth= 1] . ( 42 sec) [ -17183.6324] [ 3311] [depth= 12] . ( 42 sec) [ -17163.0858] [ 3304] [depth= 9] . ( 42 sec) [ -17012.5031] [ 3297] [depth= 3] . ( 42 sec) [ -16934.2283] [ 3256] [depth= 7] . ( 42 sec) [ -16804.4256] [ 3215] [depth= 4] . ( 43 sec) [ -16793.5916] [ 3216] [depth= 1] . ( 43 sec) [ -16558.1515] [ 3157] [depth= 12] . ( 43 sec) [ -16508.7275] [ 3138] [depth= 1] . ( 43 sec) [ -16392.8653] [ 3105] [depth= 17] . ( 43 sec) [ -16368.6594] [ 3104] [depth= 13] . ( 44 sec) [ -16365.9135] [ 3104] [depth= 2] . ( 44 sec) [ -16313.8112] [ 3075] [depth= 1] . ( 44 sec) [ -16277.6539] [ 3076] [depth= 1] . ( 44 sec) [ -16273.2983] [ 3071] [depth= 22] . ( 44 sec) [ -16042.2594] [ 3018] [depth= 16] . ( 45 sec) [ -16040.9892] [ 3017] [depth= 1] . ( 45 sec) [ -16035.2092] [ 3017] [depth= 8] . ( 45 sec) [ -15911.1544] [ 2961] [depth= 1] . ( 45 sec) [ -15803.6956] [ 2954] [depth= 21] . ( 45 sec) [ -15795.2787] [ 2954] [depth= 1] . ( 45 sec) [ -15683.8069] [ 2955] [depth= 1] . ( 46 sec) [ -15547.8418] [ 2956] [depth= 10] . ( 46 sec) [ -15536.7594] [ 2956] [depth= 2] . ( 46 sec) [ -15285.9279] [ 2958] [depth= 11] . ( 46 sec) [ -15275.8651] [ 2957] [depth= 2] . ( 46 sec) [ -15253.4638] [ 2951] [depth= 2] . ( 47 sec) [ -15195.8912] [ 2934] [depth= 10] . ( 47 sec) [ -15181.8333] [ 2934] [depth= 3] . ( 47 sec) [ -15177.2804] [ 2934] [depth= 3] . ( 47 sec) [ -15173.9620] [ 2934] [depth= 2] . ( 47 sec) [ -15031.9401] [ 2887] [depth= 3] . ( 47 sec) [ -14829.9899] [ 2841] [depth= 3] . ( 48 sec) [ -14816.9069] [ 2841] [depth= 8] . ( 48 sec) [ -14813.1019] [ 2841] [depth= 10] . ( 48 sec) [ -14811.2603] [ 2842] [depth= 1] . ( 48 sec) [ -14806.1411] [ 2843] [depth= 1] . ( 48 sec) [ -14806.0448] [ 2843] [depth= 12] . ( 49 sec) [ -14799.9820] [ 2843] [depth= 17] . ( 49 sec) [ -14670.7263] [ 2822] [depth= 9] . ( 49 sec) [ -14632.7069] [ 2824] [depth= 1] . ( 49 sec) [ -14629.4233] [ 2824] [depth= 2] . ( 49 sec) [ -14626.5513] [ 2825] [depth= 2] . ( 49 sec) [ -14617.7558] [ 2825] [depth= 1] . ( 50 sec) [ -14564.0163] [ 2807] [depth= 9] . ( 50 sec) [ -14562.6707] [ 2807] [depth= 1] . ( 50 sec) [ -14558.5372] [ 2805] [depth= 3] . ( 50 sec) [ -14556.5644] [ 2798] [depth= 1] . ( 50 sec) [ -14521.2082] [ 2784] [depth= 16] . ( 50 sec) [ -14470.6343] [ 2784] [depth= 1] . ( 51 sec) [ -14469.8509] [ 2784] [depth= 1] . ( 51 sec) [ -14468.2184] [ 2784] [depth= 16] . ( 51 sec) [ -14332.6897] [ 2734] [depth= 2] . ( 51 sec) [ -14195.2755] [ 2725] [depth= 9] . ( 51 sec) [ -14190.9317] [ 2725] [depth= 1] . ( 51 sec) [ -14107.2708] [ 2702] [depth= 17] . ( 52 sec) [ -14098.4309] [ 2701] [depth= 6] . ( 52 sec) [ -14084.3314] [ 2700] [depth= 1] . ( 52 sec) [ -14063.3502] [ 2696] [depth= 3] . ( 52 sec) [ -14040.9458] [ 2694] [depth= 5] . ( 53 sec) [ -14036.1028] [ 2694] [depth= 2] . ( 53 sec) [ -13978.8073] [ 2679] [depth= 1] . ( 53 sec) [ -13972.9917] [ 2679] [depth= 2] . ( 53 sec) [ -13346.9918] [ 2677] [depth= 14] . ( 53 sec) [ -13339.9687] [ 2676] [depth= 5] . ( 53 sec) [ -13305.0592] [ 2677] [depth= 11] . ( 54 sec) [ -13194.5019] [ 2661] [depth= 8] . ( 54 sec) [ -13188.8722] [ 2631] [depth= 3] . ( 54 sec) [ -13143.2184] [ 2608] [depth= 5] . ( 54 sec) [ -13136.4034] [ 2608] [depth= 2] . ( 55 sec) [ -13121.6348] [ 2608] [depth= 1] . ( 55 sec) [ -13113.4172] [ 2607] [depth= 1] . ( 55 sec) [ -13112.5200] [ 2607] [depth= 3] . ( 55 sec) [ -13088.7066] [ 2607] [depth= 1] . ( 55 sec) [ -13086.9628] [ 2607] [depth= 1] . ( 55 sec) [ -13008.0219] [ 2572] [depth= 1] . ( 56 sec) [ -12919.7204] [ 2532] [depth= 2] . ( 56 sec) [ -12919.3212] [ 2533] [depth= 4] . ( 56 sec) [ -12847.4846] [ 2481] [depth= 11] . ( 56 sec) [ -12841.9849] [ 2484] [depth= 1] . ( 56 sec) [ -12841.7823] [ 2486] [depth= 1] . ( 57 sec) [ -12832.5800] [ 2476] [depth= 3] . ( 57 sec) [ -12823.6574] [ 2477] [depth= 2] . ( 57 sec) [ -12745.9549] [ 2459] [depth= 14] . ( 57 sec) [ -12745.8955] [ 2459] [depth= 1] . ( 58 sec) [ -12745.6765] [ 2459] [depth= 1] . ( 58 sec) [ -12708.7011] [ 2432] [depth= 3] . ( 58 sec) [ -12615.8979] [ 2427] [depth= 2] . ( 59 sec) [ -12376.9325] [ 2345] [depth= 9] . ( 59 sec) [ -12360.7892] [ 2344] [depth= 1] . ( 59 sec) [ -12282.1706] [ 2330] [depth= 2] . ( 59 sec) [ -12216.4377] [ 2305] [depth= 9] . ( 59 sec) [ -12183.0884] [ 2305] [depth= 1] . ( 60 sec) [ -12062.4099] [ 2263] [depth= 12] . ( 60 sec) [ -12051.4588] [ 2261] [depth= 1] . ( 60 sec) [ -12050.3373] [ 2261] [depth= 1] . ( 60 sec) [ -12029.7704] [ 2245] [depth= 14] . ( 60 sec) [ -12026.8276] [ 2245] [depth= 1] . ( 61 sec) [ -11998.2376] [ 2223] [depth= 1] . ( 61 sec) [ -11994.8355] [ 2223] [depth= 2] . ( 61 sec) [ -11994.5407] [ 2223] [depth= 2] . ( 63 sec) [ -11497.2856] [Branch lengths ] . ( 69 sec) [ -11388.7960] [GTR parameters ] . ( 70 sec) [ -11303.7410] [Alpha ][ 0.269789] . ( 70 sec) [ -11301.0570] [ 2223] [depth= 20] . ( 70 sec) [ -11297.9794] [ 2222] [depth= 1] . ( 70 sec) [ -11296.4913] [ 2222] [depth= 4] . ( 72 sec) [ -11296.3725] [ 2222] [depth= 7] . ( 72 sec) [ -11296.2323] [ 2223] [depth= 6] . ( 72 sec) [ -11293.3141] [ 2223] [depth= 3] . ( 72 sec) [ -11274.4649] [ 2216] [depth= 2] . ( 73 sec) [ -11274.4246] [ 2216] [depth= 2] . ( 73 sec) [ -11274.1162] [ 2216] [depth= 1] . ( 73 sec) [ -11269.7558] [ 2215] [depth= 3] . ( 74 sec) [ -11269.2654] [ 2216] [depth= 9] . ( 74 sec) [ -11258.5960] [ 2215] [depth= 1] . ( 74 sec) [ -11192.5972] [ 2193] [depth= 3] . ( 74 sec) [ -11174.0041] [ 2187] [depth= 3] . ( 75 sec) [ -11173.9276] [ 2187] [depth= 2] . ( 75 sec) [ -11173.8590] [ 2187] [depth= 1] . ( 75 sec) [ -11173.2469] [ 2187] [depth= 1] . ( 77 sec) [ -11172.9394] [ 2186] [depth= 1] . ( 77 sec) [ -11172.8579] [ 2186] [depth= 1] . ( 78 sec) [ -11160.6124] [ 2184] [depth= 1] . ( 78 sec) [ -11149.4109] [ 2182] [depth= 1] . ( 78 sec) [ -11149.4001] [ 2182] [depth= 1] . ( 78 sec) [ -11149.3824] [ 2182] [depth= 1] . ( 79 sec) [ -11149.0945] [ 2182] [depth= 3] . ( 79 sec) [ -11121.4448] [ 2173] [depth= 1] . ( 79 sec) [ -11121.2451] [ 2173] [depth= 4] . ( 79 sec) [ -11120.3110] [ 2173] [depth= 2] . ( 81 sec) [ -11119.8034] [ 2172] [depth= 2] . ( 81 sec) [ -11119.7925] [ 2172] [depth= 5] . ( 81 sec) [ -11117.9040] [ 2173] [depth= 1] . ( 82 sec) [ -11117.6219] [ 2173] [depth= 1] . ( 82 sec) [ -11117.5870] [ 2173] [depth= 1] . ( 83 sec) [ -11107.5595] [ 2171] [depth= 9] . ( 84 sec) [ -11107.4751] [ 2167] [depth= 9] . ( 84 sec) [ -11106.1637] [ 2167] [depth= 1] . ( 84 sec) [ -11106.0285] [ 2167] [depth= 1] . ( 86 sec) [ -11098.7221] [ 2165] [depth= 3] . ( 86 sec) [ -11098.5196] [ 2165] [depth= 2] . ( 86 sec) [ -11093.2709] [ 2164] [depth= 1] . ( 86 sec) [ -11092.8557] [ 2164] [depth= 1] . ( 87 sec) [ -11072.9928] [ 2135] [depth= 11] . ( 87 sec) [ -11072.9644] [ 2135] [depth= 5] . ( 88 sec) [ -11072.8321] [ 2135] [depth= 1] . ( 88 sec) [ -11072.2436] [ 2136] [depth= 1] . ( 88 sec) [ -11059.2875] [ 2140] [depth= 1] . ( 88 sec) [ -11058.9711] [ 2140] [depth= 1] . ( 88 sec) [ -11058.9008] [ 2140] [depth= 1] . ( 89 sec) [ -11056.7303] [ 2150] [depth= 13] . ( 90 sec) [ -11056.7121] [ 2150] [depth= 2] . ( 91 sec) [ -11056.6011] [ 2150] [depth= 2] . ( 91 sec) [ -11056.5574] [ 2150] [depth= 1] . ( 92 sec) [ -11046.8431] [ 2111] [depth= 13] . ( 93 sec) [ -11046.7205] [ 2111] [depth= 1] . ( 93 sec) [ -11046.4201] [ 2111] [depth= 1] . ( 94 sec) [ -11046.3822] [ 2112] [depth= 1] . ( 94 sec) [ -11041.9060] [ 2111] [depth= 1] . ( 95 sec) [ -11039.9702] [ 2112] [depth= 1] . ( 95 sec) [ -11039.2813] [ 2112] [depth= 1] . ( 96 sec) [ -11032.9776] [ 2110] [depth= 8] . ( 96 sec) [ -11032.6124] [ 2110] [depth= 1] . ( 98 sec) [ -11012.5104] [ 2093] [depth= 8] . ( 98 sec) [ -10982.3668] [ 2074] [depth= 4] . ( 99 sec) [ -10976.8554] [ 2072] [depth= 1] . ( 100 sec) [ -10976.4308] [ 2072] [depth= 1] . ( 101 sec) [ -10973.1443] [ 2072] [depth= 1] . ( 102 sec) [ -10973.0656] [ 2072] [depth= 1] . ( 102 sec) [ -10972.9504] [ 2072] [depth= 2] . ( 102 sec) [ -10972.9350] [ 2072] [depth= 7] . ( 104 sec) [ -10972.8100] [ 2072] [depth= 1] . ( 105 sec) [ -10966.8373] [ 2064] [depth= 1] . ( 105 sec) [ -10966.7193] [ 2064] [depth= 1] . ( 106 sec) [ -10943.9763] [ 2055] [depth= 1] . ( 106 sec) [ -10943.9454] [ 2055] [depth= 4] . ( 107 sec) [ -10941.1667] [ 2054] [depth= 1] . ( 107 sec) [ -10941.0336] [ 2054] [depth= 1] . ( 111 sec) [ -10940.9961] [ 2054] [depth= 3] . ( 112 sec) [ -10884.7416] [ 2034] [depth= 2] . ( 112 sec) [ -10848.3785] [ 2036] [depth= 3] . ( 112 sec) [ -10846.8697] [ 2040] [depth= 1] . ( 114 sec) [ -10846.8308] [ 2040] [depth= 3] . ( 115 sec) [ -10846.8131] [ 2040] [depth= 1] . ( 116 sec) [ -10823.4715] [ 2036] [depth= 7] . ( 116 sec) [ -10823.2580] [ 2032] [depth= 1] . ( 117 sec) [ -10822.6987] [ 2032] [depth= 4] . ( 117 sec) [ -10814.2711] [ 2028] [depth= 3] . ( 118 sec) [ -10814.1460] [ 2028] [depth= 1] . ( 121 sec) [ -10810.1549] [ 2027] [depth= 1] . ( 123 sec) [ -10810.0111] [ 2027] [depth= 4] . ( 123 sec) [ -10808.0612] [ 2025] [depth= 1] . ( 124 sec) [ -10807.7922] [ 2025] [depth= 1] . ( 127 sec) [ -10803.9116] [ 2024] [depth= 5] . ( 130 sec) [ -10803.5764] [ 2025] [depth= 2] . ( 130 sec) [ -10803.5128] [ 2025] [depth= 1] . ( 131 sec) [ -10803.4608] [ 2025] [depth= 2] . ( 131 sec) [ -10802.5066] [ 2024] [depth= 4] . ( 131 sec) [ -10802.4907] [ 2024] [depth= 1] . ( 133 sec) [ -10802.2142] [ 2024] [depth= 1] . ( 133 sec) [ -10743.8493] [ 2001] [depth= 6] . ( 133 sec) [ -10741.5138] [ 2001] [depth= 1] . ( 134 sec) [ -10741.2752] [ 2001] [depth= 2] . ( 135 sec) [ -10736.0800] [ 2001] [depth= 3] . ( 135 sec) [ -10736.0311] [ 2001] [depth= 2] . ( 137 sec) [ -10730.8918] [ 1998] [depth= 1] . ( 137 sec) [ -10729.5772] [ 2000] [depth= 1] . ( 137 sec) [ -10729.3397] [ 1996] [depth= 1] . ( 138 sec) [ -10727.4630] [ 1995] [depth= 4] . ( 138 sec) [ -10726.7595] [ 1995] [depth= 1] . ( 138 sec) [ -10726.7201] [ 1995] [depth= 1] . ( 141 sec) [ -10726.4346] [ 1995] [depth= 1] . ( 142 sec) [ -10725.4363] [ 2001] [depth= 1] . ( 143 sec) [ -10722.1079] [ 2000] [depth= 1] . ( 145 sec) [ -10722.0907] [ 2000] [depth= 1] . ( 145 sec) [ -10721.8359] [ 1997] [depth= 1] . ( 145 sec) [ -10721.7319] [ 1997] [depth= 1] . ( 147 sec) [ -10695.7562] [Branch lengths ] . ( 150 sec) [ -10695.3902] [GTR parameters ] . ( 150 sec) [ -10695.3902] [Alpha ][ 0.269789] . ( 164 sec) [ -10695.3230] [ 1997] [depth= 1] . ( 175 sec) [ -10693.1694] [ 2000] [depth= 5] . ( 181 sec) [ -10692.3077] [ 2002] [depth= 1] . ( 184 sec) [ -10692.2726] [ 2002] [depth= 1] . ( 189 sec) [ -10692.2611] [ 2002] [depth= 1] . ( 189 sec) [ -10690.5578] [ 2000] [depth= 1] . ( 207 sec) [ -10688.4794] [ 1996] [depth= 4] . ( 243 sec) [ -10682.4012] [Branch lengths ] . ( 245 sec) [ -10682.3629] [GTR parameters ] . ( 245 sec) [ -10682.3602] [Alpha ][ 0.270695] . ( 259 sec) [ -10682.3429] [ 1996] [depth= 1] . ( 300 sec) [ -10682.1935] [ 1999] [depth= 1] . ( 336 sec) [ -10679.1332] [Branch lengths ] . ( 337 sec) [ -10679.1287] [GTR parameters ] . ( 337 sec) [ -10679.1279] [Alpha ][ 0.270098] . ( 363 sec) [ -10675.7130] [ 2004] [depth= 2] . ( 365 sec) [ -10674.0074] [ 2005] [depth= 1] . ( 371 sec) [ -10673.6329] [ 2007] [depth= 2] . ( 375 sec) [ -10673.6005] [ 2007] [depth= 2] . ( 375 sec) [ -10672.6738] [ 2007] [depth= 1] . ( 417 sec) [ -10670.7694] [ 2018] [depth= 8] . ( 429 sec) [ -10666.5407] [Branch lengths ] . ( 431 sec) [ -10666.4640] [GTR parameters ] . ( 432 sec) [ -10666.4145] [Alpha ][ 0.274135] . ( 432 sec) [ -10665.9766] [ 2014] [depth= 1] . ( 440 sec) [ -10662.2604] [ 2013] [depth= 1] . ( 456 sec) [ -10661.8119] [ 2013] [depth= 1] . ( 464 sec) [ -10661.1472] [ 2006] [depth= 1] . ( 468 sec) [ -10661.1307] [ 2006] [depth= 1] . ( 513 sec) [ -10660.9494] [ 2006] [depth= 1] . ( 523 sec) [ -10659.7837] [Branch lengths ] . ( 525 sec) [ -10659.7536] [GTR parameters ] . ( 525 sec) [ -10659.7525] [Alpha ][ 0.274694] . ( 607 sec) [ -10659.6638] [ 2010] [depth= 1] . ( 617 sec) [ -10659.6048] [Branch lengths ] . ( 618 sec) [ -10659.6047] [GTR parameters ] . ( 618 sec) [ -10659.6047] [Alpha ][ 0.274694] . ( 619 sec) [ -10658.0071] [ 2006] [depth= 2] . ( 625 sec) [ -10657.9899] [ 2009] [depth= 1] . ( 628 sec) [ -10657.8345] [ 2006] [depth= 2] . ( 649 sec) [ -10657.5730] [ 2005] [depth= 1] . ( 770 sec) [ -10657.4285] [ 2003] [depth= 1] . ( 781 sec) [ -10656.3794] [Branch lengths ] . ( 782 sec) [ -10656.3655] [GTR parameters ] . ( 782 sec) [ -10656.3645] [Alpha ][ 0.275222] . ( 943 sec) [ -10656.3302] [Branch lengths ] . ( 943 sec) [ -10656.3302] [Topology ] . ( 946 sec) [ -10656.3285] [Topology ] . ( 949 sec) [ -10656.3282] [Topology ] . ( 950 sec) [ -10656.3281] [GTR parameters ] . ( 950 sec) [ -10656.3281] [Alpha ][ 0.275222] . ( 950 sec) [ -10656.3281] [Topology ] . ( 953 sec) [ -10656.3280] [Topology ] . ( 954 sec) [ -10656.3280] [GTR parameters ] . ( 954 sec) [ -10656.3280] [Alpha ][ 0.275222] . Checking for NNIs, optimizing five branches... . ( 977 sec) [ -10656.2402] [Topology ] . Checking for NNIs, optimizing five branches... . ( 999 sec) [ -10656.2138] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1021 sec) [ -10656.2044] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1043 sec) [ -10656.2028] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -10656.202812. . Computing pairwise distances... . Building BioNJ tree... . Maximizing likelihood (using NNI moves)... . ( 7 sec) [ -11331.0777] [GTR parameters ] . ( 8 sec) [ -11137.6083] [Alpha ][ 0.500960] . ( 8 sec) [ -11137.6083] [Topology ] . ( 11 sec) [ -10846.7133] [Topology ] . ( 15 sec) [ -10788.2050] [Topology ] . ( 18 sec) [ -10770.4417] [Topology ] . ( 22 sec) [ -10764.1705] [Topology ] . ( 25 sec) [ -10761.8527] [Topology ] . ( 28 sec) [ -10760.1538] [Topology ] . ( 31 sec) [ -10756.2242] [Topology ] . ( 34 sec) [ -10751.2212] [Topology ] . ( 37 sec) [ -10746.7046] [Topology ] . Checking for NNIs, optimizing five branches... . ( 62 sec) [ -10745.2234] [Topology ] . ( 68 sec) [ -10738.9458] [GTR parameters ] . ( 68 sec) [ -10676.9327] [Alpha ][ 0.283794] . ( 68 sec) [ -10676.9327] [Topology ] . ( 71 sec) [ -10673.0638] [Topology ] . ( 74 sec) [ -10672.5895] [Topology ] . ( 77 sec) [ -10672.4366] [Topology ] . ( 80 sec) [ -10672.3670] [Topology ] . ( 83 sec) [ -10672.3314] [Topology ] . ( 86 sec) [ -10672.3125] [Topology ] . Checking for NNIs, optimizing five branches... . ( 108 sec) [ -10672.1784] [Topology ] . ( 114 sec) [ -10671.1857] [GTR parameters ] . ( 114 sec) [ -10670.9081] [Alpha ][ 0.273953] . ( 114 sec) [ -10670.9081] [Topology ] . ( 117 sec) [ -10670.8062] [Topology ] . ( 120 sec) [ -10670.7758] [Topology ] . ( 123 sec) [ -10670.7613] [Topology ] . ( 126 sec) [ -10670.7537] [Topology ] . ( 129 sec) [ -10670.7496] [Topology ] . ( 132 sec) [ -10670.7474] [Topology ] . Checking for NNIs, optimizing five branches... . ( 154 sec) [ -10670.6067] [Topology ] . ( 159 sec) [ -10670.5596] [GTR parameters ] . ( 159 sec) [ -10670.5518] [Alpha ][ 0.272238] . ( 159 sec) [ -10670.5518] [Topology ] . ( 162 sec) [ -10670.4424] [Topology ] . ( 165 sec) [ -10670.4221] [Topology ] . ( 168 sec) [ -10670.4162] [Topology ] . ( 171 sec) [ -10670.4142] [Topology ] . ( 174 sec) [ -10670.4134] [Topology ] . Checking for NNIs, optimizing five branches... . ( 197 sec) [ -10670.4133] [GTR parameters ] . ( 197 sec) [ -10670.4130] [Alpha ][ 0.272549] . ( 197 sec) [ -10670.4130] [Topology ] . ( 200 sec) [ -10670.4126] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 249 sec) [ -11331.0777] [GTR parameters ] . ( 249 sec) [ -11137.6083] [Alpha ][ 0.500960] . ( 250 sec) [ -11136.4430] [ 2014] [depth= 1] . ( 250 sec) [ -11133.4793] [ 2014] [depth= 1] . ( 250 sec) [ -11116.3234] [ 2007] [depth= 1] . ( 251 sec) [ -11116.1090] [ 2007] [depth= 1] . ( 251 sec) [ -11115.0846] [ 2007] [depth= 1] . ( 251 sec) [ -11114.5969] [ 2006] [depth= 1] . ( 252 sec) [ -11113.9350] [ 2005] [depth= 1] . ( 252 sec) [ -11113.7647] [ 2006] [depth= 2] . ( 252 sec) [ -11108.3844] [ 2003] [depth= 1] . ( 252 sec) [ -11107.2501] [ 2003] [depth= 2] . ( 253 sec) [ -11106.0105] [ 2003] [depth= 1] . ( 253 sec) [ -11105.1080] [ 2003] [depth= 1] . ( 254 sec) [ -11105.0588] [ 2003] [depth= 1] . ( 254 sec) [ -11104.8599] [ 2003] [depth= 1] . ( 254 sec) [ -11104.6092] [ 2003] [depth= 1] . ( 254 sec) [ -11104.5901] [ 2003] [depth= 1] . ( 254 sec) [ -11103.6079] [ 2003] [depth= 1] . ( 255 sec) [ -11103.5268] [ 2003] [depth= 1] . ( 255 sec) [ -11102.3631] [ 2003] [depth= 1] . ( 255 sec) [ -11102.2977] [ 2003] [depth= 2] . ( 255 sec) [ -11102.1355] [ 2003] [depth= 1] . ( 255 sec) [ -11101.3620] [ 2003] [depth= 1] . ( 256 sec) [ -11101.2542] [ 2003] [depth= 1] . ( 256 sec) [ -11101.2409] [ 2003] [depth= 1] . ( 257 sec) [ -11101.2252] [ 2003] [depth= 1] . ( 257 sec) [ -11101.1937] [ 2003] [depth= 1] . ( 257 sec) [ -11101.1179] [ 2003] [depth= 3] . ( 258 sec) [ -11101.0912] [ 2003] [depth= 1] . ( 258 sec) [ -11098.1667] [ 2004] [depth= 1] . ( 259 sec) [ -11091.1431] [ 2009] [depth= 1] . ( 259 sec) [ -11086.4029] [ 2011] [depth= 1] . ( 259 sec) [ -11086.2805] [ 2011] [depth= 1] . ( 260 sec) [ -11081.6850] [ 2011] [depth= 1] . ( 260 sec) [ -11068.4600] [ 2007] [depth= 4] . ( 260 sec) [ -11068.3726] [ 2007] [depth= 1] . ( 261 sec) [ -11068.1988] [ 2007] [depth= 1] . ( 261 sec) [ -11067.9164] [ 2007] [depth= 1] . ( 261 sec) [ -11066.2698] [ 2006] [depth= 1] . ( 261 sec) [ -11066.2105] [ 2006] [depth= 1] . ( 264 sec) [ -11062.0386] [ 2005] [depth= 1] . ( 265 sec) [ -11060.6392] [ 2006] [depth= 2] . ( 265 sec) [ -11058.9426] [ 2006] [depth= 2] . ( 266 sec) [ -11056.9381] [ 2004] [depth= 2] . ( 266 sec) [ -11056.8651] [ 2004] [depth= 1] . ( 266 sec) [ -11050.1487] [ 2004] [depth= 1] . ( 267 sec) [ -11049.4134] [ 2006] [depth= 1] . ( 267 sec) [ -11049.1043] [ 2004] [depth= 1] . ( 267 sec) [ -11049.0938] [ 2004] [depth= 1] . ( 267 sec) [ -11047.6221] [ 2004] [depth= 1] . ( 268 sec) [ -11031.6174] [ 2003] [depth= 3] . ( 268 sec) [ -11023.9100] [ 2005] [depth= 3] . ( 268 sec) [ -11018.7080] [ 2005] [depth= 1] . ( 268 sec) [ -11018.4393] [ 2007] [depth= 2] . ( 268 sec) [ -11007.3238] [ 2007] [depth= 1] . ( 269 sec) [ -11006.9383] [ 2007] [depth= 1] . ( 269 sec) [ -11004.8620] [ 2007] [depth= 1] . ( 270 sec) [ -11004.2700] [ 2006] [depth= 1] . ( 270 sec) [ -10995.6026] [ 2001] [depth= 1] . ( 270 sec) [ -10970.7194] [ 1996] [depth= 1] . ( 270 sec) [ -10937.6845] [ 1997] [depth= 4] . ( 271 sec) [ -10936.5689] [ 1997] [depth= 1] . ( 271 sec) [ -10935.9874] [ 1997] [depth= 1] . ( 271 sec) [ -10935.9659] [ 1997] [depth= 2] . ( 271 sec) [ -10935.8929] [ 1997] [depth= 1] . ( 273 sec) [ -10929.9521] [ 1997] [depth= 2] . ( 273 sec) [ -10928.4798] [ 1997] [depth= 1] . ( 273 sec) [ -10928.4544] [ 1997] [depth= 1] . ( 273 sec) [ -10928.4261] [ 1997] [depth= 1] . ( 277 sec) [ -10927.5954] [ 1997] [depth= 1] . ( 277 sec) [ -10926.6530] [ 1997] [depth= 1] . ( 277 sec) [ -10926.5779] [ 1997] [depth= 1] . ( 279 sec) [ -10926.5514] [ 1997] [depth= 2] . ( 281 sec) [ -10923.4964] [ 1997] [depth= 1] . ( 281 sec) [ -10916.9544] [ 1998] [depth= 2] . ( 281 sec) [ -10912.2097] [ 1997] [depth= 4] . ( 282 sec) [ -10900.3539] [ 1999] [depth= 1] . ( 283 sec) [ -10900.0813] [ 1999] [depth= 1] . ( 284 sec) [ -10889.1459] [ 1998] [depth= 1] . ( 284 sec) [ -10889.1047] [ 2002] [depth= 2] . ( 284 sec) [ -10887.9591] [ 2003] [depth= 1] . ( 285 sec) [ -10883.0860] [ 2009] [depth= 7] . ( 285 sec) [ -10882.8314] [ 2008] [depth= 1] . ( 285 sec) [ -10879.9395] [ 2007] [depth= 1] . ( 285 sec) [ -10878.3707] [ 2012] [depth= 1] . ( 286 sec) [ -10878.2563] [ 2012] [depth= 3] . ( 286 sec) [ -10868.6095] [ 2016] [depth= 1] . ( 287 sec) [ -10867.4555] [ 2012] [depth= 1] . ( 287 sec) [ -10866.4750] [ 2012] [depth= 1] . ( 287 sec) [ -10862.1974] [ 2011] [depth= 1] . ( 288 sec) [ -10861.6700] [ 2009] [depth= 3] . ( 288 sec) [ -10859.4837] [ 2005] [depth= 1] . ( 288 sec) [ -10849.0100] [ 2005] [depth= 1] . ( 288 sec) [ -10847.1820] [ 2006] [depth= 2] . ( 289 sec) [ -10846.9757] [ 2006] [depth= 1] . ( 290 sec) [ -10846.9449] [ 2006] [depth= 1] . ( 290 sec) [ -10846.9115] [ 2006] [depth= 1] . ( 290 sec) [ -10846.9015] [ 2006] [depth= 3] . ( 290 sec) [ -10846.8842] [ 2006] [depth= 1] . ( 290 sec) [ -10846.6930] [ 2006] [depth= 4] . ( 292 sec) [ -10846.6809] [ 2006] [depth= 2] . ( 293 sec) [ -10846.4099] [ 2006] [depth= 1] . ( 293 sec) [ -10845.8168] [ 2006] [depth= 1] . ( 294 sec) [ -10845.7093] [ 2006] [depth= 1] . ( 295 sec) [ -10845.4337] [ 2005] [depth= 3] . ( 295 sec) [ -10840.7191] [ 2004] [depth= 1] . ( 295 sec) [ -10837.6492] [ 2005] [depth= 1] . ( 296 sec) [ -10835.1282] [ 2003] [depth= 1] . ( 297 sec) [ -10833.3392] [ 2006] [depth= 1] . ( 297 sec) [ -10832.5984] [ 2009] [depth= 1] . ( 297 sec) [ -10830.9069] [ 2006] [depth= 1] . ( 298 sec) [ -10828.0262] [ 2006] [depth= 1] . ( 298 sec) [ -10827.8474] [ 2006] [depth= 1] . ( 304 sec) [ -10827.7776] [ 2006] [depth= 2] . ( 304 sec) [ -10827.6156] [ 2006] [depth= 2] . ( 304 sec) [ -10827.5377] [ 2006] [depth= 2] . ( 304 sec) [ -10827.3078] [ 2006] [depth= 2] . ( 306 sec) [ -10827.2428] [ 2006] [depth= 2] . ( 306 sec) [ -10826.6096] [ 2006] [depth= 2] . ( 307 sec) [ -10826.4818] [ 2006] [depth= 1] . ( 307 sec) [ -10826.4295] [ 2006] [depth= 1] . ( 307 sec) [ -10826.4144] [ 2006] [depth= 1] . ( 310 sec) [ -10826.3827] [ 2006] [depth= 1] . ( 324 sec) [ -10755.9989] [Branch lengths ] . ( 329 sec) [ -10751.1100] [GTR parameters ] . ( 329 sec) [ -10690.4387] [Alpha ][ 0.282892] . ( 331 sec) [ -10690.4003] [ 2006] [depth= 2] . ( 337 sec) [ -10690.3902] [ 2006] [depth= 2] . ( 345 sec) [ -10690.3401] [ 2006] [depth= 1] . ( 347 sec) [ -10688.8919] [ 2005] [depth= 1] . ( 347 sec) [ -10688.7987] [ 2005] [depth= 1] . ( 349 sec) [ -10688.6865] [ 2010] [depth= 1] . ( 349 sec) [ -10688.6759] [ 2010] [depth= 1] . ( 350 sec) [ -10686.1465] [ 2002] [depth= 4] . ( 350 sec) [ -10685.8054] [ 2003] [depth= 2] . ( 362 sec) [ -10682.4571] [ 2001] [depth= 1] . ( 362 sec) [ -10682.3720] [ 2001] [depth= 2] . ( 369 sec) [ -10680.9399] [ 1996] [depth= 2] . ( 370 sec) [ -10680.9210] [ 1996] [depth= 1] . ( 373 sec) [ -10679.2405] [ 1995] [depth= 1] . ( 378 sec) [ -10679.2267] [ 1995] [depth= 1] . ( 414 sec) [ -10670.9758] [Branch lengths ] . ( 421 sec) [ -10669.8049] [GTR parameters ] . ( 422 sec) [ -10669.6099] [Alpha ][ 0.274547] . ( 445 sec) [ -10668.9000] [ 1995] [depth= 3] . ( 461 sec) [ -10668.8679] [ 1992] [depth= 2] . ( 508 sec) [ -10666.7579] [Branch lengths ] . ( 513 sec) [ -10666.7050] [GTR parameters ] . ( 513 sec) [ -10666.7050] [Alpha ][ 0.274547] . ( 603 sec) [ -10666.3795] [Branch lengths ] . ( 661 sec) [ -10666.1506] [ 2002] [depth= 6] . ( 761 sec) [ -10665.2915] [Branch lengths ] . ( 767 sec) [ -10665.2456] [GTR parameters ] . ( 767 sec) [ -10665.2455] [Alpha ][ 0.274273] . ( 822 sec) [ -10664.8532] [ 2015] [depth= 1] . ( 860 sec) [ -10664.8389] [ 2017] [depth= 2] . ( 919 sec) [ -10662.7767] [Branch lengths ] . ( 925 sec) [ -10662.7633] [GTR parameters ] . ( 925 sec) [ -10662.7633] [Alpha ][ 0.274547] . ( 981 sec) [ -10662.7521] [ 2017] [depth= 1] . ( 1080 sec) [ -10659.6700] [Branch lengths ] . ( 1081 sec) [ -10659.6699] [GTR parameters ] . ( 1081 sec) [ -10659.6699] [Alpha ][ 0.274547] . ( 1232 sec) [ -10656.7916] [Branch lengths ] . ( 1232 sec) [ -10656.7916] [Topology ] . ( 1235 sec) [ -10656.2104] [Topology ] . ( 1238 sec) [ -10656.1915] [Topology ] . ( 1241 sec) [ -10656.1899] [Topology ] . ( 1244 sec) [ -10656.1895] [Topology ] . ( 1245 sec) [ -10656.1893] [GTR parameters ] . ( 1246 sec) [ -10656.1893] [Alpha ][ 0.274547] . ( 1246 sec) [ -10656.1893] [Topology ] . ( 1249 sec) [ -10656.1891] [Topology ] . ( 1250 sec) [ -10656.1891] [GTR parameters ] . ( 1251 sec) [ -10656.1891] [Alpha ][ 0.274547] . Checking for NNIs, optimizing five branches... . ( 1271 sec) [ -10656.1889] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1292 sec) [ -10656.1887] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -10670.412606 . Log likelihood obtained after SPR moves : -10656.188722 . Log likelihood of the current tree: -10656.188722. . Printing the most likely tree in file 'nucleic_M2711_123x1181_2006.phy_phyml_tree.txt'... . Best log likelihood : -10655.646036 . Time used 0h21m54s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 5187.68user 0.00system 1:26:53elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps