.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : nucleic_M2913_81x897_2006.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : yes . Number of random starting trees : 5 . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . 84 sites are made from completely undetermined states ('X', '-', '?' or 'N')... . Compressing sequences... . 197 patterns found. (out of a total of 897 sites) . 676 sites without polymorphism (75.36%). . [Random start 1/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . This analysis requires at least 8Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -5677.8562] [GTR parameters ] . ( 1 sec) [ -5594.2800] [Alpha ][ 0.500960] . ( 1 sec) [ -5525.3727] [ 471] [depth= 5] . ( 1 sec) [ -5278.1246] [ 456] [depth= 14] . ( 1 sec) [ -5254.7598] [ 455] [depth= 8] . ( 1 sec) [ -5245.4716] [ 454] [depth= 1] . ( 1 sec) [ -5226.9546] [ 452] [depth= 5] . ( 1 sec) [ -5226.8295] [ 452] [depth= 1] . ( 1 sec) [ -5220.6238] [ 452] [depth= 1] . ( 1 sec) [ -5217.7269] [ 451] [depth= 2] . ( 1 sec) [ -5209.8156] [ 451] [depth= 4] . ( 1 sec) [ -5204.1247] [ 450] [depth= 3] . ( 1 sec) [ -5194.5626] [ 450] [depth= 4] . ( 1 sec) [ -5193.2123] [ 448] [depth= 6] . ( 1 sec) [ -5184.6989] [ 448] [depth= 3] . ( 1 sec) [ -5184.6201] [ 448] [depth= 1] . ( 1 sec) [ -5171.3568] [ 448] [depth= 4] . ( 2 sec) [ -5102.7993] [ 448] [depth= 2] . ( 2 sec) [ -5076.7068] [ 448] [depth= 3] . ( 2 sec) [ -5064.3942] [ 446] [depth= 11] . ( 2 sec) [ -5031.6874] [ 446] [depth= 2] . ( 2 sec) [ -4981.1533] [ 444] [depth= 15] . ( 2 sec) [ -4915.9118] [ 437] [depth= 21] . ( 2 sec) [ -4885.5491] [ 437] [depth= 3] . ( 2 sec) [ -4855.1365] [ 437] [depth= 4] . ( 2 sec) [ -4848.6811] [ 436] [depth= 15] . ( 2 sec) [ -4846.9222] [ 436] [depth= 1] . ( 2 sec) [ -4821.3622] [ 433] [depth= 2] . ( 2 sec) [ -4805.4885] [ 433] [depth= 1] . ( 2 sec) [ -4765.3088] [ 430] [depth= 22] . ( 2 sec) [ -4724.6903] [ 422] [depth= 1] . ( 2 sec) [ -4708.5174] [ 422] [depth= 27] . ( 2 sec) [ -4685.0935] [ 419] [depth= 8] . ( 2 sec) [ -4652.8498] [ 420] [depth= 1] . ( 2 sec) [ -4579.4391] [ 412] [depth= 7] . ( 2 sec) [ -4569.7512] [ 410] [depth= 1] . ( 2 sec) [ -4567.0300] [ 410] [depth= 4] . ( 2 sec) [ -4560.4861] [ 409] [depth= 22] . ( 2 sec) [ -4556.6831] [ 409] [depth= 1] . ( 2 sec) [ -4538.2129] [ 405] [depth= 16] . ( 2 sec) [ -4522.0467] [ 401] [depth= 6] . ( 2 sec) [ -4519.5453] [ 401] [depth= 2] . ( 2 sec) [ -4513.7489] [ 400] [depth= 1] . ( 2 sec) [ -4513.6569] [ 400] [depth= 1] . ( 3 sec) [ -4509.0295] [ 399] [depth= 19] . ( 3 sec) [ -4491.3107] [ 399] [depth= 1] . ( 3 sec) [ -4485.9791] [ 398] [depth= 1] . ( 3 sec) [ -4475.0107] [ 398] [depth= 11] . ( 3 sec) [ -4474.6466] [ 398] [depth= 16] . ( 3 sec) [ -4465.6295] [ 396] [depth= 13] . ( 3 sec) [ -4424.8396] [ 394] [depth= 16] . ( 3 sec) [ -4395.3912] [ 389] [depth= 10] . ( 3 sec) [ -4339.2776] [ 379] [depth= 17] . ( 3 sec) [ -4099.6017] [ 372] [depth= 4] . ( 3 sec) [ -4082.7285] [ 370] [depth= 13] . ( 3 sec) [ -4076.9686] [ 370] [depth= 3] . ( 3 sec) [ -4068.0301] [ 370] [depth= 2] . ( 3 sec) [ -4038.1896] [ 370] [depth= 2] . ( 3 sec) [ -4031.7873] [ 368] [depth= 5] . ( 3 sec) [ -4030.7952] [ 365] [depth= 7] . ( 3 sec) [ -3949.4428] [ 364] [depth= 14] . ( 3 sec) [ -3936.2011] [ 364] [depth= 11] . ( 3 sec) [ -3772.7519] [ 364] [depth= 3] . ( 3 sec) [ -3751.7220] [ 362] [depth= 16] . ( 3 sec) [ -3739.3174] [ 360] [depth= 7] . ( 3 sec) [ -3700.1064] [ 353] [depth= 7] . ( 3 sec) [ -3696.7968] [ 354] [depth= 5] . ( 3 sec) [ -3694.8793] [ 352] [depth= 11] . ( 4 sec) [ -3687.5861] [ 351] [depth= 7] . ( 4 sec) [ -3657.0787] [ 349] [depth= 9] . ( 4 sec) [ -3638.8973] [ 348] [depth= 5] . ( 4 sec) [ -3627.2944] [ 348] [depth= 1] . ( 4 sec) [ -3626.9145] [ 347] [depth= 7] . ( 4 sec) [ -3626.7100] [ 347] [depth= 2] . ( 4 sec) [ -3624.7774] [ 347] [depth= 6] . ( 4 sec) [ -3569.4361] [ 335] [depth= 9] . ( 4 sec) [ -3564.0303] [ 336] [depth= 11] . ( 4 sec) [ -3555.9398] [ 336] [depth= 9] . ( 4 sec) [ -3554.8946] [ 336] [depth= 2] . ( 4 sec) [ -3544.6260] [ 336] [depth= 3] . ( 4 sec) [ -3463.0031] [ 334] [depth= 4] . ( 4 sec) [ -3453.7023] [ 333] [depth= 13] . ( 4 sec) [ -3406.6959] [ 333] [depth= 1] . ( 4 sec) [ -3399.9130] [ 334] [depth= 1] . ( 4 sec) [ -3397.0874] [ 333] [depth= 2] . ( 4 sec) [ -3362.5348] [ 329] [depth= 3] . ( 4 sec) [ -3346.5930] [ 329] [depth= 3] . ( 5 sec) [ -3321.7975] [ 326] [depth= 12] . ( 5 sec) [ -3313.6169] [ 326] [depth= 1] . ( 5 sec) [ -3312.3921] [ 325] [depth= 8] . ( 5 sec) [ -3304.3585] [ 324] [depth= 1] . ( 5 sec) [ -3293.1379] [ 325] [depth= 1] . ( 5 sec) [ -3271.0689] [ 321] [depth= 11] . ( 5 sec) [ -3270.0162] [ 322] [depth= 1] . ( 5 sec) [ -3252.8005] [ 318] [depth= 13] . ( 5 sec) [ -3223.1199] [ 315] [depth= 10] . ( 5 sec) [ -3222.2255] [ 315] [depth= 2] . ( 5 sec) [ -3220.3723] [ 314] [depth= 21] . ( 5 sec) [ -3211.7194] [ 313] [depth= 9] . ( 5 sec) [ -3211.4026] [ 313] [depth= 3] . ( 5 sec) [ -3210.7951] [ 313] [depth= 1] . ( 5 sec) [ -3210.3379] [ 313] [depth= 10] . ( 5 sec) [ -3209.9373] [ 313] [depth= 1] . ( 6 sec) [ -3209.8144] [ 314] [depth= 1] . ( 6 sec) [ -3209.3528] [ 317] [depth= 8] . ( 6 sec) [ -3199.4443] [ 316] [depth= 9] . ( 6 sec) [ -3180.6709] [ 313] [depth= 8] . ( 6 sec) [ -3175.1178] [ 313] [depth= 4] . ( 7 sec) [ -3171.5864] [ 312] [depth= 9] . ( 7 sec) [ -3170.4208] [ 311] [depth= 3] . ( 7 sec) [ -3170.1508] [ 311] [depth= 1] . ( 7 sec) [ -3169.6173] [ 311] [depth= 1] . ( 8 sec) [ -3151.8034] [ 308] [depth= 18] . ( 8 sec) [ -3132.4156] [ 305] [depth= 8] . ( 8 sec) [ -3131.9590] [ 305] [depth= 10] . ( 8 sec) [ -3129.0383] [ 305] [depth= 3] . ( 8 sec) [ -3128.2703] [ 305] [depth= 3] . ( 8 sec) [ -3128.1726] [ 305] [depth= 6] . ( 8 sec) [ -3085.8157] [ 299] [depth= 18] . ( 8 sec) [ -3083.7606] [ 298] [depth= 2] . ( 8 sec) [ -3082.6296] [ 298] [depth= 1] . ( 8 sec) [ -3076.4979] [ 299] [depth= 1] . ( 8 sec) [ -3067.5207] [ 298] [depth= 3] . ( 8 sec) [ -3067.5013] [ 298] [depth= 2] . ( 8 sec) [ -3053.0464] [ 297] [depth= 10] . ( 8 sec) [ -3046.3725] [ 296] [depth= 6] . ( 8 sec) [ -3031.1172] [ 294] [depth= 10] . ( 9 sec) [ -3030.0858] [ 294] [depth= 2] . ( 9 sec) [ -3030.0116] [ 294] [depth= 1] . ( 9 sec) [ -2955.3901] [ 290] [depth= 18] . ( 9 sec) [ -2952.6720] [ 291] [depth= 18] . ( 9 sec) [ -2936.6450] [ 288] [depth= 3] . ( 9 sec) [ -2934.3669] [ 288] [depth= 1] . ( 9 sec) [ -2933.8811] [ 287] [depth= 1] . ( 9 sec) [ -2930.8739] [ 287] [depth= 12] . ( 9 sec) [ -2930.8501] [ 287] [depth= 3] . ( 9 sec) [ -2929.8630] [ 287] [depth= 3] . ( 9 sec) [ -2929.8392] [ 287] [depth= 7] . ( 9 sec) [ -2920.4567] [ 286] [depth= 4] . ( 9 sec) [ -2919.8487] [ 286] [depth= 1] . ( 10 sec) [ -2906.5562] [ 284] [depth= 9] . ( 10 sec) [ -2893.9140] [ 282] [depth= 6] . ( 10 sec) [ -2893.3042] [ 282] [depth= 2] . ( 10 sec) [ -2878.6061] [ 280] [depth= 5] . ( 10 sec) [ -2877.6535] [ 280] [depth= 7] . ( 10 sec) [ -2877.4715] [ 280] [depth= 1] . ( 10 sec) [ -2877.1518] [ 280] [depth= 2] . ( 10 sec) [ -2875.0397] [ 280] [depth= 2] . ( 10 sec) [ -2867.9225] [ 279] [depth= 21] . ( 11 sec) [ -2867.6058] [ 279] [depth= 1] . ( 11 sec) [ -2864.0866] [ 278] [depth= 7] . ( 11 sec) [ -2863.7853] [ 278] [depth= 1] . ( 11 sec) [ -2862.8786] [ 278] [depth= 7] . ( 11 sec) [ -2857.7887] [ 277] [depth= 7] . ( 11 sec) [ -2851.7427] [ 276] [depth= 7] . ( 12 sec) [ -2850.9734] [ 276] [depth= 1] . ( 12 sec) [ -2850.8851] [ 276] [depth= 2] . ( 12 sec) [ -2850.4388] [ 276] [depth= 1] . ( 12 sec) [ -2849.1034] [ 276] [depth= 1] . ( 12 sec) [ -2833.2871] [ 274] [depth= 8] . ( 12 sec) [ -2832.6505] [ 274] [depth= 1] . ( 12 sec) [ -2797.1343] [ 269] [depth= 6] . ( 12 sec) [ -2797.0724] [ 269] [depth= 1] . ( 12 sec) [ -2797.0493] [ 269] [depth= 3] . ( 12 sec) [ -2796.6144] [ 269] [depth= 17] . ( 12 sec) [ -2796.5041] [ 269] [depth= 4] . ( 12 sec) [ -2796.0387] [ 269] [depth= 2] . ( 12 sec) [ -2795.8682] [ 268] [depth= 1] . ( 12 sec) [ -2791.8134] [ 267] [depth= 2] . ( 12 sec) [ -2787.9737] [ 267] [depth= 1] . ( 12 sec) [ -2785.5337] [ 267] [depth= 1] . ( 12 sec) [ -2785.1226] [ 267] [depth= 9] . ( 12 sec) [ -2784.3950] [ 267] [depth= 1] . ( 12 sec) [ -2782.8441] [ 267] [depth= 1] . ( 12 sec) [ -2763.5640] [ 263] [depth= 9] . ( 12 sec) [ -2755.0382] [ 261] [depth= 1] . ( 12 sec) [ -2737.1909] [ 258] [depth= 18] . ( 12 sec) [ -2736.8988] [ 258] [depth= 2] . ( 13 sec) [ -2731.0857] [ 257] [depth= 15] . ( 13 sec) [ -2729.1452] [ 257] [depth= 11] . ( 13 sec) [ -2728.9105] [ 258] [depth= 5] . ( 13 sec) [ -2724.4874] [ 256] [depth= 4] . ( 13 sec) [ -2710.9385] [ 254] [depth= 11] . ( 13 sec) [ -2709.4082] [ 254] [depth= 10] . ( 13 sec) [ -2703.2742] [ 253] [depth= 6] . ( 13 sec) [ -2703.0952] [ 253] [depth= 4] . ( 13 sec) [ -2701.7378] [ 253] [depth= 5] . ( 13 sec) [ -2701.6053] [ 253] [depth= 5] . ( 13 sec) [ -2701.3909] [ 253] [depth= 1] . ( 13 sec) [ -2692.0342] [ 252] [depth= 7] . ( 13 sec) [ -2687.7392] [ 251] [depth= 3] . ( 13 sec) [ -2687.6900] [ 251] [depth= 6] . ( 13 sec) [ -2686.7775] [ 251] [depth= 1] . ( 13 sec) [ -2686.7633] [ 251] [depth= 2] . ( 13 sec) [ -2677.8150] [ 250] [depth= 1] . ( 14 sec) [ -2667.1299] [ 249] [depth= 7] . ( 14 sec) [ -2667.1147] [ 249] [depth= 3] . ( 14 sec) [ -2661.1695] [ 248] [depth= 12] . ( 14 sec) [ -2647.4874] [Branch lengths ] . ( 15 sec) [ -2619.8367] [GTR parameters ] . ( 15 sec) [ -2600.8082] [Alpha ][ 0.250961] . ( 15 sec) [ -2599.1467] [ 247] [depth= 18] . ( 15 sec) [ -2593.9358] [ 246] [depth= 1] . ( 16 sec) [ -2592.0851] [ 244] [depth= 1] . ( 16 sec) [ -2584.4825] [ 243] [depth= 9] . ( 16 sec) [ -2575.2836] [ 241] [depth= 1] . ( 18 sec) [ -2575.2456] [ 241] [depth= 2] . ( 19 sec) [ -2524.0529] [ 229] [depth= 6] . ( 20 sec) [ -2509.3743] [ 228] [depth= 4] . ( 20 sec) [ -2508.2513] [ 228] [depth= 4] . ( 20 sec) [ -2508.2327] [ 228] [depth= 5] . ( 20 sec) [ -2508.1601] [ 228] [depth= 3] . ( 20 sec) [ -2508.0842] [ 228] [depth= 1] . ( 20 sec) [ -2508.0732] [ 228] [depth= 1] . ( 24 sec) [ -2503.7446] [ 227] [depth= 7] . ( 24 sec) [ -2503.6805] [ 227] [depth= 5] . ( 24 sec) [ -2503.3771] [ 227] [depth= 2] . ( 25 sec) [ -2503.3668] [ 227] [depth= 8] . ( 25 sec) [ -2502.7231] [ 227] [depth= 9] . ( 25 sec) [ -2502.7015] [ 227] [depth= 4] . ( 25 sec) [ -2471.5240] [ 217] [depth= 8] . ( 25 sec) [ -2463.8189] [ 216] [depth= 9] . ( 26 sec) [ -2461.7467] [ 216] [depth= 4] . ( 27 sec) [ -2452.0795] [ 216] [depth= 5] . ( 27 sec) [ -2451.5479] [ 216] [depth= 1] . ( 29 sec) [ -2450.5091] [ 218] [depth= 4] . ( 31 sec) [ -2450.4485] [ 218] [depth= 4] . ( 33 sec) [ -2436.5066] [ 215] [depth= 5] . ( 33 sec) [ -2436.3806] [ 215] [depth= 2] . ( 35 sec) [ -2436.2848] [ 215] [depth= 7] . ( 35 sec) [ -2430.9863] [ 215] [depth= 1] . ( 35 sec) [ -2430.7676] [ 215] [depth= 1] . ( 35 sec) [ -2429.7877] [ 215] [depth= 10] . ( 36 sec) [ -2429.6462] [ 215] [depth= 1] . ( 36 sec) [ -2428.9483] [ 214] [depth= 18] . ( 36 sec) [ -2428.8940] [ 214] [depth= 4] . ( 37 sec) [ -2428.5849] [ 214] [depth= 3] . ( 37 sec) [ -2428.5617] [ 214] [depth= 3] . ( 38 sec) [ -2428.4961] [ 214] [depth= 1] . ( 38 sec) [ -2428.4560] [ 214] [depth= 1] . ( 42 sec) [ -2428.4410] [ 214] [depth= 6] . ( 42 sec) [ -2428.2752] [ 214] [depth= 2] . ( 43 sec) [ -2428.2615] [ 214] [depth= 4] . ( 43 sec) [ -2428.2459] [ 214] [depth= 9] . ( 44 sec) [ -2427.5864] [ 214] [depth= 2] . ( 44 sec) [ -2426.5784] [ 214] [depth= 11] . ( 46 sec) [ -2426.5221] [ 214] [depth= 2] . ( 46 sec) [ -2426.3078] [ 214] [depth= 3] . ( 46 sec) [ -2426.2967] [ 214] [depth= 3] . ( 47 sec) [ -2426.0643] [ 214] [depth= 1] . ( 47 sec) [ -2426.0048] [ 214] [depth= 2] . ( 48 sec) [ -2425.9921] [ 214] [depth= 3] . ( 48 sec) [ -2425.9789] [ 214] [depth= 1] . ( 49 sec) [ -2425.8128] [ 214] [depth= 4] . ( 49 sec) [ -2425.7943] [ 214] [depth= 2] . ( 51 sec) [ -2425.7840] [ 214] [depth= 3] . ( 51 sec) [ -2425.7229] [ 214] [depth= 1] . ( 56 sec) [ -2425.7104] [ 214] [depth= 4] . ( 56 sec) [ -2425.6472] [ 214] [depth= 2] . ( 57 sec) [ -2425.4523] [ 214] [depth= 3] . ( 58 sec) [ -2425.2549] [ 214] [depth= 1] . ( 59 sec) [ -2425.2365] [ 214] [depth= 1] . ( 63 sec) [ -2424.2848] [ 214] [depth= 6] . ( 63 sec) [ -2424.2281] [ 214] [depth= 1] . ( 64 sec) [ -2423.7941] [ 214] [depth= 6] . ( 64 sec) [ -2423.6415] [ 214] [depth= 2] . ( 65 sec) [ -2423.4927] [ 214] [depth= 4] . ( 68 sec) [ -2423.4613] [ 214] [depth= 3] . ( 68 sec) [ -2423.4079] [ 214] [depth= 5] . ( 73 sec) [ -2423.3366] [ 214] [depth= 1] . ( 81 sec) [ -2423.3206] [ 214] [depth= 10] . ( 85 sec) [ -2418.5481] [Branch lengths ] . ( 86 sec) [ -2416.8003] [GTR parameters ] . ( 86 sec) [ -2413.9371] [Alpha ][ 0.140090] . ( 92 sec) [ -2413.7465] [ 214] [depth= 2] . ( 95 sec) [ -2413.3772] [ 214] [depth= 3] . ( 95 sec) [ -2413.2473] [ 214] [depth= 2] . ( 96 sec) [ -2413.1808] [ 214] [depth= 2] . ( 102 sec) [ -2413.1428] [ 214] [depth= 2] . ( 104 sec) [ -2412.2320] [ 214] [depth= 1] . ( 106 sec) [ -2412.0483] [ 214] [depth= 1] . ( 106 sec) [ -2411.9887] [ 214] [depth= 1] . ( 109 sec) [ -2411.7451] [ 214] [depth= 7] . ( 111 sec) [ -2411.7263] [ 214] [depth= 2] . ( 114 sec) [ -2411.6382] [ 214] [depth= 7] . ( 117 sec) [ -2411.6200] [ 214] [depth= 2] . ( 132 sec) [ -2411.5687] [ 214] [depth= 10] . ( 133 sec) [ -2411.5465] [ 214] [depth= 4] . ( 159 sec) [ -2411.5335] [ 214] [depth= 6] . ( 182 sec) [ -2411.3892] [Branch lengths ] . ( 182 sec) [ -2411.3021] [GTR parameters ] . ( 183 sec) [ -2411.2986] [Alpha ][ 0.136812] . ( 292 sec) [ -2411.2912] [Branch lengths ] . ( 321 sec) [ -2411.2277] [ 213] [depth= 5] . ( 325 sec) [ -2411.2194] [Branch lengths ] . ( 325 sec) [ -2411.2188] [GTR parameters ] . ( 325 sec) [ -2411.2187] [Alpha ][ 0.137460] . ( 325 sec) [ -2411.2187] [Topology ] . ( 326 sec) [ -2411.2182] [Topology ] . ( 326 sec) [ -2411.2182] [GTR parameters ] . ( 326 sec) [ -2411.2182] [Alpha ][ 0.137460] . Checking for NNIs, optimizing five branches... . ( 330 sec) [ -2411.2180] [Topology ] . Checking for NNIs, optimizing five branches... . ( 334 sec) [ -2411.2162] [Topology ] . Checking for NNIs, optimizing five branches... . ( 338 sec) [ -2411.2129] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -2411.212904. . [Random start 2/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -5359.4357] [GTR parameters ] . ( 1 sec) [ -5275.5756] [Alpha ][ 0.500960] . ( 1 sec) [ -5212.1568] [ 480] [depth= 13] . ( 1 sec) [ -5097.6181] [ 467] [depth= 11] . ( 1 sec) [ -5032.7924] [ 465] [depth= 3] . ( 1 sec) [ -4997.0418] [ 462] [depth= 1] . ( 1 sec) [ -4837.8462] [ 458] [depth= 4] . ( 1 sec) [ -4833.0950] [ 458] [depth= 3] . ( 1 sec) [ -4820.5801] [ 456] [depth= 2] . ( 1 sec) [ -4752.2472] [ 456] [depth= 3] . ( 1 sec) [ -4736.7223] [ 456] [depth= 3] . ( 1 sec) [ -4721.3023] [ 456] [depth= 2] . ( 1 sec) [ -4706.8019] [ 456] [depth= 4] . ( 1 sec) [ -4706.0210] [ 455] [depth= 13] . ( 1 sec) [ -4625.6282] [ 455] [depth= 5] . ( 1 sec) [ -4609.2053] [ 451] [depth= 15] . ( 1 sec) [ -4596.7870] [ 451] [depth= 1] . ( 1 sec) [ -4596.7743] [ 450] [depth= 7] . ( 1 sec) [ -4587.4643] [ 450] [depth= 3] . ( 1 sec) [ -4535.4570] [ 446] [depth= 18] . ( 1 sec) [ -4523.8446] [ 444] [depth= 8] . ( 1 sec) [ -4505.5219] [ 444] [depth= 3] . ( 2 sec) [ -4411.3399] [ 432] [depth= 18] . ( 2 sec) [ -4365.0410] [ 432] [depth= 18] . ( 2 sec) [ -4364.5928] [ 432] [depth= 18] . ( 2 sec) [ -4315.3516] [ 428] [depth= 9] . ( 2 sec) [ -4262.7881] [ 429] [depth= 9] . ( 2 sec) [ -4259.2888] [ 428] [depth= 20] . ( 2 sec) [ -4247.1531] [ 428] [depth= 1] . ( 2 sec) [ -4246.9434] [ 428] [depth= 1] . ( 2 sec) [ -4246.1730] [ 428] [depth= 1] . ( 2 sec) [ -4230.3484] [ 425] [depth= 18] . ( 2 sec) [ -4184.6855] [ 416] [depth= 22] . ( 2 sec) [ -4165.6656] [ 415] [depth= 4] . ( 2 sec) [ -4141.1165] [ 414] [depth= 19] . ( 2 sec) [ -4109.4090] [ 413] [depth= 8] . ( 2 sec) [ -4108.7091] [ 410] [depth= 19] . ( 2 sec) [ -4077.9065] [ 407] [depth= 5] . ( 2 sec) [ -4070.4452] [ 408] [depth= 19] . ( 2 sec) [ -4066.0372] [ 408] [depth= 10] . ( 2 sec) [ -4056.6788] [ 408] [depth= 3] . ( 2 sec) [ -4030.3843] [ 405] [depth= 3] . ( 2 sec) [ -4028.7444] [ 405] [depth= 1] . ( 2 sec) [ -4009.7891] [ 402] [depth= 10] . ( 3 sec) [ -3998.2388] [ 399] [depth= 15] . ( 3 sec) [ -3997.3206] [ 399] [depth= 2] . ( 3 sec) [ -3966.8124] [ 398] [depth= 17] . ( 3 sec) [ -3956.3408] [ 395] [depth= 2] . ( 3 sec) [ -3909.2921] [ 384] [depth= 19] . ( 3 sec) [ -3893.3074] [ 384] [depth= 8] . ( 3 sec) [ -3841.3318] [ 374] [depth= 13] . ( 3 sec) [ -3832.7093] [ 374] [depth= 20] . ( 3 sec) [ -3832.1248] [ 374] [depth= 1] . ( 3 sec) [ -3810.5650] [ 371] [depth= 11] . ( 3 sec) [ -3791.7212] [ 363] [depth= 1] . ( 3 sec) [ -3788.9521] [ 363] [depth= 4] . ( 3 sec) [ -3729.7925] [ 362] [depth= 1] . ( 3 sec) [ -3729.6738] [ 362] [depth= 1] . ( 3 sec) [ -3717.1981] [ 360] [depth= 21] . ( 3 sec) [ -3717.0361] [ 360] [depth= 1] . ( 3 sec) [ -3708.7273] [ 360] [depth= 3] . ( 3 sec) [ -3702.2265] [ 360] [depth= 1] . ( 3 sec) [ -3689.3906] [ 359] [depth= 16] . ( 3 sec) [ -3565.2887] [ 359] [depth= 2] . ( 3 sec) [ -3562.0238] [ 354] [depth= 8] . ( 4 sec) [ -3541.3583] [ 359] [depth= 4] . ( 4 sec) [ -3507.1308] [ 354] [depth= 7] . ( 4 sec) [ -3493.8092] [ 351] [depth= 4] . ( 4 sec) [ -3493.7971] [ 351] [depth= 1] . ( 4 sec) [ -3477.8010] [ 344] [depth= 8] . ( 4 sec) [ -3467.6271] [ 344] [depth= 1] . ( 4 sec) [ -3455.4462] [ 342] [depth= 10] . ( 4 sec) [ -3438.3442] [ 342] [depth= 2] . ( 4 sec) [ -3422.4897] [ 340] [depth= 7] . ( 4 sec) [ -3402.7351] [ 339] [depth= 26] . ( 4 sec) [ -3378.2151] [ 338] [depth= 2] . ( 4 sec) [ -3360.0896] [ 336] [depth= 13] . ( 4 sec) [ -3360.0034] [ 336] [depth= 1] . ( 4 sec) [ -3359.5913] [ 336] [depth= 2] . ( 4 sec) [ -3277.0937] [ 324] [depth= 26] . ( 4 sec) [ -3276.2453] [ 324] [depth= 1] . ( 4 sec) [ -3271.3808] [ 323] [depth= 21] . ( 5 sec) [ -3271.2862] [ 323] [depth= 7] . ( 5 sec) [ -3268.5662] [ 323] [depth= 1] . ( 5 sec) [ -3235.5319] [ 318] [depth= 11] . ( 5 sec) [ -3235.4554] [ 318] [depth= 2] . ( 5 sec) [ -3233.8454] [ 318] [depth= 1] . ( 5 sec) [ -3232.4132] [ 318] [depth= 1] . ( 5 sec) [ -3229.6167] [ 316] [depth= 2] . ( 5 sec) [ -3221.1558] [ 316] [depth= 1] . ( 5 sec) [ -3219.0737] [ 316] [depth= 4] . ( 5 sec) [ -3211.0076] [ 314] [depth= 2] . ( 6 sec) [ -3210.4090] [ 314] [depth= 1] . ( 6 sec) [ -3206.6050] [ 313] [depth= 22] . ( 6 sec) [ -3200.1406] [ 312] [depth= 6] . ( 6 sec) [ -3200.0053] [ 312] [depth= 2] . ( 6 sec) [ -3199.0146] [ 312] [depth= 1] . ( 6 sec) [ -3191.2396] [ 312] [depth= 1] . ( 6 sec) [ -3189.6782] [ 312] [depth= 1] . ( 6 sec) [ -3189.3765] [ 312] [depth= 9] . ( 6 sec) [ -3180.3839] [ 311] [depth= 14] . ( 7 sec) [ -3145.0707] [ 305] [depth= 26] . ( 7 sec) [ -3144.9669] [ 305] [depth= 2] . ( 7 sec) [ -3141.5393] [ 305] [depth= 10] . ( 7 sec) [ -3138.5109] [ 304] [depth= 4] . ( 7 sec) [ -3125.1672] [ 302] [depth= 4] . ( 7 sec) [ -3122.8630] [ 301] [depth= 8] . ( 7 sec) [ -3121.1292] [ 301] [depth= 4] . ( 7 sec) [ -3095.3591] [ 296] [depth= 13] . ( 8 sec) [ -3091.7405] [ 300] [depth= 12] . ( 8 sec) [ -3091.1983] [ 300] [depth= 2] . ( 8 sec) [ -3082.2160] [ 299] [depth= 19] . ( 8 sec) [ -3057.8176] [ 296] [depth= 23] . ( 8 sec) [ -3050.8226] [ 295] [depth= 13] . ( 8 sec) [ -3050.5779] [ 295] [depth= 4] . ( 8 sec) [ -3050.5493] [ 295] [depth= 1] . ( 8 sec) [ -3048.8411] [ 295] [depth= 4] . ( 8 sec) [ -3032.9698] [ 291] [depth= 11] . ( 8 sec) [ -3032.2412] [ 291] [depth= 5] . ( 8 sec) [ -3031.6008] [ 291] [depth= 15] . ( 8 sec) [ -3011.4191] [ 288] [depth= 10] . ( 9 sec) [ -3003.9829] [ 286] [depth= 1] . ( 9 sec) [ -2996.1025] [ 285] [depth= 5] . ( 9 sec) [ -2995.6930] [ 285] [depth= 3] . ( 9 sec) [ -2994.4833] [ 285] [depth= 2] . ( 9 sec) [ -2993.5391] [ 284] [depth= 3] . ( 9 sec) [ -2971.7889] [ 283] [depth= 12] . ( 9 sec) [ -2954.1694] [ 279] [depth= 17] . ( 9 sec) [ -2953.5032] [ 279] [depth= 1] . ( 9 sec) [ -2946.6906] [ 278] [depth= 3] . ( 9 sec) [ -2945.6208] [ 278] [depth= 1] . ( 9 sec) [ -2944.6498] [ 278] [depth= 5] . ( 9 sec) [ -2943.1437] [ 278] [depth= 2] . ( 10 sec) [ -2942.0193] [ 278] [depth= 1] . ( 10 sec) [ -2928.9252] [ 276] [depth= 5] . ( 10 sec) [ -2928.6807] [ 275] [depth= 22] . ( 10 sec) [ -2925.1285] [ 275] [depth= 1] . ( 10 sec) [ -2924.4721] [ 275] [depth= 8] . ( 10 sec) [ -2919.9754] [ 273] [depth= 10] . ( 10 sec) [ -2917.4062] [ 272] [depth= 9] . ( 10 sec) [ -2916.8651] [ 272] [depth= 2] . ( 10 sec) [ -2906.4293] [ 270] [depth= 6] . ( 10 sec) [ -2906.3727] [ 270] [depth= 7] . ( 10 sec) [ -2898.8797] [ 269] [depth= 2] . ( 10 sec) [ -2894.7684] [ 268] [depth= 10] . ( 10 sec) [ -2892.2839] [ 267] [depth= 3] . ( 11 sec) [ -2863.5198] [ 263] [depth= 4] . ( 11 sec) [ -2857.4045] [ 263] [depth= 5] . ( 11 sec) [ -2853.2780] [ 263] [depth= 1] . ( 11 sec) [ -2842.7897] [ 261] [depth= 7] . ( 11 sec) [ -2828.9718] [ 259] [depth= 7] . ( 11 sec) [ -2826.1437] [ 259] [depth= 4] . ( 11 sec) [ -2807.8254] [ 256] [depth= 12] . ( 11 sec) [ -2796.2202] [ 255] [depth= 2] . ( 11 sec) [ -2787.7214] [ 255] [depth= 1] . ( 11 sec) [ -2779.0935] [ 254] [depth= 8] . ( 11 sec) [ -2778.8188] [ 254] [depth= 11] . ( 11 sec) [ -2771.7717] [ 252] [depth= 3] . ( 11 sec) [ -2771.6854] [ 252] [depth= 3] . ( 12 sec) [ -2770.8397] [ 252] [depth= 3] . ( 12 sec) [ -2765.7962] [ 252] [depth= 6] . ( 12 sec) [ -2761.4298] [ 251] [depth= 2] . ( 12 sec) [ -2752.5216] [ 250] [depth= 16] . ( 12 sec) [ -2740.8648] [ 247] [depth= 2] . ( 12 sec) [ -2740.8381] [ 249] [depth= 2] . ( 12 sec) [ -2740.7239] [ 249] [depth= 4] . ( 12 sec) [ -2740.5451] [ 249] [depth= 2] . ( 12 sec) [ -2738.9426] [ 249] [depth= 1] . ( 12 sec) [ -2734.0102] [ 248] [depth= 2] . ( 12 sec) [ -2697.9855] [ 244] [depth= 6] . ( 13 sec) [ -2697.9076] [ 244] [depth= 3] . ( 13 sec) [ -2697.6380] [ 244] [depth= 2] . ( 13 sec) [ -2696.0810] [ 244] [depth= 4] . ( 13 sec) [ -2695.8465] [ 244] [depth= 1] . ( 13 sec) [ -2693.6859] [ 243] [depth= 5] . ( 13 sec) [ -2688.7972] [ 242] [depth= 2] . ( 13 sec) [ -2688.5176] [ 242] [depth= 7] . ( 13 sec) [ -2687.0753] [ 242] [depth= 1] . ( 13 sec) [ -2687.0212] [ 242] [depth= 2] . ( 13 sec) [ -2681.2221] [ 241] [depth= 3] . ( 13 sec) [ -2681.1660] [ 241] [depth= 1] . ( 13 sec) [ -2681.0814] [ 241] [depth= 1] . ( 14 sec) [ -2680.6797] [ 241] [depth= 2] . ( 14 sec) [ -2675.6580] [ 240] [depth= 9] . ( 14 sec) [ -2675.6254] [ 240] [depth= 1] . ( 14 sec) [ -2675.3221] [ 240] [depth= 2] . ( 14 sec) [ -2651.0827] [ 237] [depth= 8] . ( 15 sec) [ -2645.0763] [ 236] [depth= 1] . ( 15 sec) [ -2643.0107] [ 236] [depth= 6] . ( 15 sec) [ -2629.2472] [ 234] [depth= 3] . ( 15 sec) [ -2629.1444] [ 234] [depth= 5] . ( 15 sec) [ -2628.6670] [ 234] [depth= 4] . ( 15 sec) [ -2622.0219] [ 233] [depth= 2] . ( 15 sec) [ -2621.6293] [ 233] [depth= 4] . ( 15 sec) [ -2599.3443] [Branch lengths ] . ( 17 sec) [ -2560.0294] [GTR parameters ] . ( 17 sec) [ -2544.9978] [Alpha ][ 0.250961] . ( 17 sec) [ -2544.4286] [ 229] [depth= 1] . ( 18 sec) [ -2542.0019] [ 230] [depth= 8] . ( 18 sec) [ -2537.8436] [ 229] [depth= 2] . ( 19 sec) [ -2537.4149] [ 229] [depth= 2] . ( 19 sec) [ -2535.2346] [ 228] [depth= 4] . ( 19 sec) [ -2534.7274] [ 228] [depth= 2] . ( 19 sec) [ -2534.3067] [ 228] [depth= 3] . ( 19 sec) [ -2534.2495] [ 228] [depth= 3] . ( 19 sec) [ -2527.8594] [ 228] [depth= 2] . ( 19 sec) [ -2527.8490] [ 228] [depth= 2] . ( 20 sec) [ -2527.3706] [ 228] [depth= 2] . ( 21 sec) [ -2527.3513] [ 228] [depth= 5] . ( 21 sec) [ -2527.1051] [ 228] [depth= 2] . ( 23 sec) [ -2511.6808] [ 224] [depth= 16] . ( 23 sec) [ -2511.6492] [ 224] [depth= 2] . ( 23 sec) [ -2511.4658] [ 224] [depth= 3] . ( 26 sec) [ -2507.4862] [ 223] [depth= 5] . ( 26 sec) [ -2505.3544] [ 223] [depth= 6] . ( 26 sec) [ -2502.5763] [ 223] [depth= 1] . ( 26 sec) [ -2502.5631] [ 223] [depth= 12] . ( 26 sec) [ -2502.5356] [ 223] [depth= 6] . ( 26 sec) [ -2498.7193] [ 223] [depth= 3] . ( 26 sec) [ -2498.7091] [ 223] [depth= 4] . ( 26 sec) [ -2498.6522] [ 223] [depth= 3] . ( 26 sec) [ -2496.9778] [ 223] [depth= 7] . ( 27 sec) [ -2496.6527] [ 223] [depth= 1] . ( 27 sec) [ -2496.2099] [ 223] [depth= 2] . ( 27 sec) [ -2496.1481] [ 223] [depth= 3] . ( 27 sec) [ -2496.0674] [ 223] [depth= 6] . ( 27 sec) [ -2494.6866] [ 222] [depth= 1] . ( 27 sec) [ -2494.1601] [ 222] [depth= 8] . ( 27 sec) [ -2493.3908] [ 222] [depth= 1] . ( 27 sec) [ -2491.2120] [ 222] [depth= 9] . ( 27 sec) [ -2490.7461] [ 222] [depth= 2] . ( 28 sec) [ -2490.7076] [ 222] [depth= 3] . ( 28 sec) [ -2490.6518] [ 222] [depth= 2] . ( 28 sec) [ -2489.5224] [ 222] [depth= 1] . ( 29 sec) [ -2489.4211] [ 222] [depth= 1] . ( 29 sec) [ -2476.3416] [ 220] [depth= 11] . ( 30 sec) [ -2469.3745] [ 218] [depth= 4] . ( 31 sec) [ -2469.2596] [ 218] [depth= 1] . ( 32 sec) [ -2469.2264] [ 218] [depth= 9] . ( 32 sec) [ -2468.4820] [ 218] [depth= 1] . ( 35 sec) [ -2468.4338] [ 218] [depth= 1] . ( 35 sec) [ -2460.6595] [ 216] [depth= 7] . ( 35 sec) [ -2460.3471] [ 216] [depth= 2] . ( 35 sec) [ -2460.3286] [ 216] [depth= 2] . ( 35 sec) [ -2460.0088] [ 216] [depth= 1] . ( 35 sec) [ -2459.2006] [ 216] [depth= 3] . ( 36 sec) [ -2453.1147] [ 215] [depth= 7] . ( 36 sec) [ -2452.4247] [ 215] [depth= 1] . ( 36 sec) [ -2452.3392] [ 215] [depth= 1] . ( 36 sec) [ -2452.1494] [ 215] [depth= 4] . ( 37 sec) [ -2451.9642] [ 215] [depth= 1] . ( 38 sec) [ -2447.8363] [ 214] [depth= 2] . ( 38 sec) [ -2447.8202] [ 214] [depth= 4] . ( 38 sec) [ -2444.8434] [ 214] [depth= 1] . ( 38 sec) [ -2444.7879] [ 214] [depth= 1] . ( 38 sec) [ -2444.5780] [ 214] [depth= 1] . ( 41 sec) [ -2444.5518] [ 214] [depth= 1] . ( 41 sec) [ -2444.4260] [ 214] [depth= 1] . ( 42 sec) [ -2443.6104] [ 214] [depth= 4] . ( 42 sec) [ -2443.4308] [ 214] [depth= 2] . ( 42 sec) [ -2443.3828] [ 214] [depth= 4] . ( 43 sec) [ -2442.2177] [ 214] [depth= 4] . ( 43 sec) [ -2436.8359] [ 213] [depth= 6] . ( 43 sec) [ -2436.7815] [ 213] [depth= 1] . ( 45 sec) [ -2436.4659] [ 213] [depth= 1] . ( 45 sec) [ -2435.5728] [ 213] [depth= 1] . ( 45 sec) [ -2435.5556] [ 213] [depth= 1] . ( 45 sec) [ -2435.0446] [ 213] [depth= 11] . ( 45 sec) [ -2434.5942] [ 213] [depth= 1] . ( 45 sec) [ -2434.5822] [ 213] [depth= 1] . ( 46 sec) [ -2434.5563] [ 213] [depth= 2] . ( 46 sec) [ -2433.0822] [ 213] [depth= 2] . ( 47 sec) [ -2433.0695] [ 213] [depth= 3] . ( 47 sec) [ -2433.0203] [ 213] [depth= 1] . ( 47 sec) [ -2431.2370] [ 213] [depth= 5] . ( 47 sec) [ -2430.6652] [ 213] [depth= 3] . ( 47 sec) [ -2430.6174] [ 213] [depth= 4] . ( 48 sec) [ -2430.5849] [ 213] [depth= 2] . ( 50 sec) [ -2430.5010] [ 213] [depth= 1] . ( 50 sec) [ -2428.5749] [ 213] [depth= 4] . ( 51 sec) [ -2428.5209] [ 213] [depth= 18] . ( 51 sec) [ -2428.3715] [ 213] [depth= 4] . ( 51 sec) [ -2428.2707] [ 213] [depth= 5] . ( 51 sec) [ -2428.2589] [ 213] [depth= 1] . ( 55 sec) [ -2428.2460] [ 213] [depth= 3] . ( 58 sec) [ -2428.2318] [ 213] [depth= 2] . ( 62 sec) [ -2428.2131] [ 213] [depth= 2] . ( 65 sec) [ -2428.1937] [ 213] [depth= 1] . ( 65 sec) [ -2428.1429] [ 213] [depth= 1] . ( 65 sec) [ -2428.0843] [ 213] [depth= 1] . ( 68 sec) [ -2427.6331] [ 213] [depth= 10] . ( 68 sec) [ -2418.9843] [Branch lengths ] . ( 70 sec) [ -2418.5992] [GTR parameters ] . ( 70 sec) [ -2416.0144] [Alpha ][ 0.143651] . ( 75 sec) [ -2415.3176] [ 213] [depth= 10] . ( 86 sec) [ -2414.6544] [ 213] [depth= 1] . ( 86 sec) [ -2414.6067] [ 213] [depth= 6] . ( 88 sec) [ -2414.5768] [ 213] [depth= 1] . ( 137 sec) [ -2414.5204] [ 213] [depth= 2] . ( 140 sec) [ -2414.4567] [ 213] [depth= 1] . ( 169 sec) [ -2414.3671] [Branch lengths ] . ( 170 sec) [ -2414.2779] [GTR parameters ] . ( 170 sec) [ -2414.2762] [Alpha ][ 0.145964] . ( 272 sec) [ -2414.2719] [Branch lengths ] . ( 304 sec) [ -2414.2717] [Branch lengths ] . ( 304 sec) [ -2414.2717] [Topology ] . ( 304 sec) [ -2414.2717] [Topology ] . ( 305 sec) [ -2414.2716] [GTR parameters ] . ( 305 sec) [ -2414.2715] [Alpha ][ 0.145602] . Checking for NNIs, optimizing five branches... . ( 309 sec) [ -2414.2692] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -2414.269245. . [Random start 3/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -6240.4137] [GTR parameters ] . ( 1 sec) [ -6148.0238] [Alpha ][ 0.500960] . ( 1 sec) [ -6044.7254] [ 491] [depth= 13] . ( 1 sec) [ -5839.4880] [ 478] [depth= 9] . ( 1 sec) [ -5779.4492] [ 478] [depth= 2] . ( 1 sec) [ -5738.5950] [ 474] [depth= 1] . ( 1 sec) [ -5706.0354] [ 473] [depth= 5] . ( 1 sec) [ -5700.4605] [ 473] [depth= 1] . ( 1 sec) [ -5669.1395] [ 473] [depth= 3] . ( 1 sec) [ -5668.1058] [ 473] [depth= 2] . ( 1 sec) [ -5631.5253] [ 473] [depth= 4] . ( 1 sec) [ -5603.1030] [ 473] [depth= 12] . ( 1 sec) [ -5503.5792] [ 473] [depth= 2] . ( 1 sec) [ -5486.2721] [ 472] [depth= 6] . ( 1 sec) [ -5466.5542] [ 472] [depth= 2] . ( 1 sec) [ -5449.5135] [ 471] [depth= 3] . ( 1 sec) [ -5446.7005] [ 471] [depth= 1] . ( 1 sec) [ -5427.5665] [ 471] [depth= 14] . ( 1 sec) [ -5381.2759] [ 471] [depth= 3] . ( 2 sec) [ -5325.9441] [ 466] [depth= 17] . ( 2 sec) [ -5235.8323] [ 467] [depth= 1] . ( 2 sec) [ -5125.0219] [ 465] [depth= 19] . ( 2 sec) [ -5061.4723] [ 454] [depth= 17] . ( 2 sec) [ -4972.6967] [ 452] [depth= 4] . ( 2 sec) [ -4922.5884] [ 448] [depth= 22] . ( 2 sec) [ -4922.1544] [ 448] [depth= 5] . ( 2 sec) [ -4901.1785] [ 441] [depth= 23] . ( 2 sec) [ -4891.9333] [ 439] [depth= 1] . ( 2 sec) [ -4831.1378] [ 432] [depth= 19] . ( 2 sec) [ -4787.6979] [ 427] [depth= 8] . ( 2 sec) [ -4749.2700] [ 427] [depth= 2] . ( 2 sec) [ -4732.2576] [ 423] [depth= 8] . ( 2 sec) [ -4726.1696] [ 423] [depth= 2] . ( 2 sec) [ -4715.9960] [ 423] [depth= 3] . ( 2 sec) [ -4683.5330] [ 420] [depth= 9] . ( 2 sec) [ -4679.0394] [ 420] [depth= 6] . ( 2 sec) [ -4670.8902] [ 420] [depth= 2] . ( 2 sec) [ -4576.5367] [ 419] [depth= 20] . ( 2 sec) [ -4573.7788] [ 418] [depth= 19] . ( 2 sec) [ -4569.6041] [ 417] [depth= 18] . ( 2 sec) [ -4557.3416] [ 415] [depth= 5] . ( 2 sec) [ -4539.0870] [ 411] [depth= 10] . ( 2 sec) [ -4502.6046] [ 407] [depth= 18] . ( 2 sec) [ -4496.5009] [ 405] [depth= 1] . ( 3 sec) [ -4456.2899] [ 400] [depth= 15] . ( 3 sec) [ -4454.0066] [ 400] [depth= 1] . ( 3 sec) [ -4437.4916] [ 397] [depth= 13] . ( 3 sec) [ -4427.5150] [ 395] [depth= 19] . ( 3 sec) [ -4412.1742] [ 393] [depth= 8] . ( 3 sec) [ -4403.5582] [ 391] [depth= 14] . ( 3 sec) [ -4380.7606] [ 384] [depth= 1] . ( 3 sec) [ -4324.5256] [ 383] [depth= 11] . ( 3 sec) [ -4314.8933] [ 382] [depth= 18] . ( 3 sec) [ -4312.9814] [ 382] [depth= 1] . ( 3 sec) [ -4291.3545] [ 381] [depth= 18] . ( 3 sec) [ -4286.7151] [ 381] [depth= 3] . ( 3 sec) [ -4257.0572] [ 378] [depth= 19] . ( 3 sec) [ -4227.8337] [ 375] [depth= 15] . ( 3 sec) [ -4224.2147] [ 375] [depth= 1] . ( 3 sec) [ -4208.4590] [ 374] [depth= 4] . ( 3 sec) [ -4147.6229] [ 371] [depth= 15] . ( 3 sec) [ -4145.0689] [ 371] [depth= 2] . ( 3 sec) [ -4106.6141] [ 372] [depth= 24] . ( 3 sec) [ -4091.5134] [ 371] [depth= 2] . ( 3 sec) [ -4089.0240] [ 371] [depth= 21] . ( 3 sec) [ -4087.9482] [ 371] [depth= 1] . ( 3 sec) [ -4082.2049] [ 370] [depth= 7] . ( 4 sec) [ -4075.9083] [ 370] [depth= 1] . ( 4 sec) [ -4074.2519] [ 370] [depth= 1] . ( 4 sec) [ -3894.7374] [ 369] [depth= 14] . ( 4 sec) [ -3893.2616] [ 369] [depth= 1] . ( 4 sec) [ -3892.8365] [ 369] [depth= 3] . ( 4 sec) [ -3874.1721] [ 369] [depth= 9] . ( 4 sec) [ -3864.7820] [ 368] [depth= 7] . ( 4 sec) [ -3863.0702] [ 368] [depth= 1] . ( 4 sec) [ -3852.8469] [ 367] [depth= 9] . ( 4 sec) [ -3846.4452] [ 367] [depth= 1] . ( 4 sec) [ -3823.4056] [ 364] [depth= 14] . ( 4 sec) [ -3818.3513] [ 363] [depth= 8] . ( 4 sec) [ -3811.5345] [ 362] [depth= 5] . ( 4 sec) [ -3794.8084] [ 359] [depth= 13] . ( 4 sec) [ -3640.1103] [ 357] [depth= 25] . ( 4 sec) [ -3624.2871] [ 354] [depth= 19] . ( 4 sec) [ -3622.5234] [ 353] [depth= 1] . ( 5 sec) [ -3619.4593] [ 353] [depth= 2] . ( 5 sec) [ -3613.1983] [ 352] [depth= 15] . ( 5 sec) [ -3591.9250] [ 349] [depth= 1] . ( 5 sec) [ -3561.8353] [ 351] [depth= 6] . ( 5 sec) [ -3531.5245] [ 351] [depth= 18] . ( 5 sec) [ -3521.3919] [ 350] [depth= 13] . ( 5 sec) [ -3519.8603] [ 348] [depth= 1] . ( 5 sec) [ -3517.9394] [ 348] [depth= 5] . ( 5 sec) [ -3492.9743] [ 344] [depth= 6] . ( 5 sec) [ -3482.5130] [ 343] [depth= 7] . ( 5 sec) [ -3461.7831] [ 340] [depth= 27] . ( 5 sec) [ -3453.1039] [ 339] [depth= 17] . ( 5 sec) [ -3442.3656] [ 338] [depth= 19] . ( 5 sec) [ -3441.1329] [ 338] [depth= 1] . ( 5 sec) [ -3441.1046] [ 338] [depth= 2] . ( 5 sec) [ -3439.0834] [ 338] [depth= 1] . ( 5 sec) [ -3438.9996] [ 338] [depth= 1] . ( 5 sec) [ -3438.2475] [ 338] [depth= 1] . ( 5 sec) [ -3433.5238] [ 338] [depth= 7] . ( 5 sec) [ -3433.1706] [ 340] [depth= 18] . ( 5 sec) [ -3432.2615] [ 340] [depth= 15] . ( 6 sec) [ -3405.9678] [ 337] [depth= 17] . ( 6 sec) [ -3385.5326] [ 332] [depth= 12] . ( 6 sec) [ -3385.2014] [ 331] [depth= 9] . ( 6 sec) [ -3377.9827] [ 331] [depth= 1] . ( 6 sec) [ -3374.8841] [ 330] [depth= 14] . ( 6 sec) [ -3372.2278] [ 330] [depth= 1] . ( 6 sec) [ -3359.1177] [ 328] [depth= 6] . ( 6 sec) [ -3328.2634] [ 327] [depth= 8] . ( 6 sec) [ -3322.1901] [ 327] [depth= 2] . ( 6 sec) [ -3283.9873] [ 326] [depth= 3] . ( 6 sec) [ -3267.3429] [ 326] [depth= 2] . ( 6 sec) [ -3189.6759] [ 319] [depth= 20] . ( 6 sec) [ -3187.1190] [ 319] [depth= 1] . ( 6 sec) [ -3172.9492] [ 319] [depth= 13] . ( 6 sec) [ -3160.5698] [ 319] [depth= 1] . ( 6 sec) [ -3109.6297] [ 308] [depth= 2] . ( 6 sec) [ -3098.1639] [ 308] [depth= 2] . ( 6 sec) [ -3045.6205] [ 302] [depth= 14] . ( 6 sec) [ -3045.5417] [ 302] [depth= 1] . ( 6 sec) [ -3003.9116] [ 301] [depth= 7] . ( 6 sec) [ -3003.2041] [ 301] [depth= 1] . ( 6 sec) [ -3002.4117] [ 301] [depth= 18] . ( 6 sec) [ -3001.1263] [ 300] [depth= 2] . ( 6 sec) [ -2920.7773] [ 282] [depth= 9] . ( 7 sec) [ -2855.3614] [ 269] [depth= 16] . ( 7 sec) [ -2854.7843] [ 269] [depth= 8] . ( 7 sec) [ -2852.6639] [ 269] [depth= 2] . ( 7 sec) [ -2852.6450] [ 269] [depth= 7] . ( 7 sec) [ -2850.3687] [ 269] [depth= 3] . ( 7 sec) [ -2846.5887] [ 268] [depth= 1] . ( 7 sec) [ -2844.2864] [ 267] [depth= 11] . ( 7 sec) [ -2844.0893] [ 267] [depth= 15] . ( 7 sec) [ -2843.3474] [ 267] [depth= 1] . ( 7 sec) [ -2839.8196] [ 267] [depth= 3] . ( 7 sec) [ -2839.6834] [ 267] [depth= 1] . ( 7 sec) [ -2833.3291] [ 266] [depth= 7] . ( 7 sec) [ -2827.9133] [ 264] [depth= 15] . ( 7 sec) [ -2824.2928] [ 264] [depth= 2] . ( 7 sec) [ -2818.5994] [ 262] [depth= 3] . ( 7 sec) [ -2808.5111] [ 261] [depth= 14] . ( 7 sec) [ -2807.0894] [ 261] [depth= 1] . ( 7 sec) [ -2807.0070] [ 260] [depth= 8] . ( 7 sec) [ -2806.9414] [ 260] [depth= 1] . ( 8 sec) [ -2793.2575] [ 259] [depth= 5] . ( 8 sec) [ -2792.0280] [ 259] [depth= 3] . ( 8 sec) [ -2791.5954] [ 259] [depth= 1] . ( 8 sec) [ -2783.9743] [ 258] [depth= 20] . ( 8 sec) [ -2779.6800] [ 257] [depth= 15] . ( 8 sec) [ -2778.4405] [ 257] [depth= 2] . ( 8 sec) [ -2778.4296] [ 257] [depth= 1] . ( 8 sec) [ -2768.1987] [ 256] [depth= 6] . ( 8 sec) [ -2767.8370] [ 256] [depth= 6] . ( 9 sec) [ -2762.5107] [ 255] [depth= 12] . ( 9 sec) [ -2762.0858] [ 255] [depth= 1] . ( 9 sec) [ -2705.4288] [ 243] [depth= 18] . ( 9 sec) [ -2702.7119] [ 243] [depth= 1] . ( 9 sec) [ -2702.6811] [ 243] [depth= 1] . ( 9 sec) [ -2702.6563] [ 243] [depth= 3] . ( 9 sec) [ -2702.5879] [ 243] [depth= 2] . ( 9 sec) [ -2690.4009] [ 240] [depth= 5] . ( 9 sec) [ -2690.3510] [ 240] [depth= 5] . ( 9 sec) [ -2676.9819] [ 238] [depth= 11] . ( 9 sec) [ -2676.3360] [ 238] [depth= 2] . ( 9 sec) [ -2675.6360] [ 238] [depth= 3] . ( 9 sec) [ -2675.5746] [ 238] [depth= 4] . ( 9 sec) [ -2675.5570] [ 238] [depth= 7] . ( 11 sec) [ -2675.5027] [ 238] [depth= 2] . ( 11 sec) [ -2670.3227] [ 238] [depth= 1] . ( 11 sec) [ -2669.8021] [ 238] [depth= 1] . ( 11 sec) [ -2666.1490] [ 237] [depth= 6] . ( 11 sec) [ -2665.9866] [ 237] [depth= 1] . ( 12 sec) [ -2657.9703] [ 236] [depth= 11] . ( 12 sec) [ -2641.9775] [ 233] [depth= 7] . ( 12 sec) [ -2641.9036] [ 233] [depth= 2] . ( 12 sec) [ -2630.8871] [ 231] [depth= 4] . ( 12 sec) [ -2629.2325] [ 231] [depth= 1] . ( 12 sec) [ -2628.5448] [ 231] [depth= 2] . ( 12 sec) [ -2628.4758] [ 231] [depth= 2] . ( 12 sec) [ -2628.3941] [ 231] [depth= 3] . ( 12 sec) [ -2628.3779] [ 231] [depth= 1] . ( 12 sec) [ -2628.0128] [ 231] [depth= 1] . ( 12 sec) [ -2627.6451] [ 231] [depth= 2] . ( 12 sec) [ -2627.4011] [ 231] [depth= 1] . ( 12 sec) [ -2627.3686] [ 231] [depth= 3] . ( 12 sec) [ -2627.1732] [ 231] [depth= 3] . ( 12 sec) [ -2626.4684] [ 231] [depth= 1] . ( 12 sec) [ -2620.2540] [ 230] [depth= 8] . ( 12 sec) [ -2619.9171] [ 230] [depth= 16] . ( 12 sec) [ -2612.6135] [ 229] [depth= 1] . ( 13 sec) [ -2612.6029] [ 229] [depth= 3] . ( 13 sec) [ -2589.4648] [Branch lengths ] . ( 13 sec) [ -2533.1084] [GTR parameters ] . ( 14 sec) [ -2519.1759] [Alpha ][ 0.250961] . ( 15 sec) [ -2515.0685] [ 228] [depth= 11] . ( 16 sec) [ -2513.7927] [ 228] [depth= 2] . ( 17 sec) [ -2513.7240] [ 228] [depth= 1] . ( 19 sec) [ -2512.3288] [ 228] [depth= 13] . ( 19 sec) [ -2500.6874] [ 226] [depth= 3] . ( 19 sec) [ -2500.6491] [ 226] [depth= 11] . ( 19 sec) [ -2498.7589] [ 226] [depth= 1] . ( 19 sec) [ -2497.9401] [ 226] [depth= 1] . ( 19 sec) [ -2493.0209] [ 224] [depth= 4] . ( 20 sec) [ -2489.4939] [ 223] [depth= 2] . ( 20 sec) [ -2489.4704] [ 223] [depth= 1] . ( 21 sec) [ -2488.3336] [ 223] [depth= 2] . ( 21 sec) [ -2487.8281] [ 223] [depth= 3] . ( 21 sec) [ -2483.7096] [ 222] [depth= 2] . ( 21 sec) [ -2463.8299] [ 219] [depth= 12] . ( 21 sec) [ -2458.9444] [ 217] [depth= 8] . ( 22 sec) [ -2452.2569] [ 217] [depth= 3] . ( 23 sec) [ -2452.2278] [ 217] [depth= 5] . ( 23 sec) [ -2447.1862] [ 216] [depth= 5] . ( 24 sec) [ -2445.8191] [ 216] [depth= 1] . ( 24 sec) [ -2445.6767] [ 216] [depth= 2] . ( 24 sec) [ -2444.1380] [ 216] [depth= 1] . ( 25 sec) [ -2444.1023] [ 216] [depth= 11] . ( 25 sec) [ -2443.7600] [ 216] [depth= 2] . ( 26 sec) [ -2441.9240] [ 216] [depth= 1] . ( 27 sec) [ -2441.8202] [ 216] [depth= 4] . ( 29 sec) [ -2441.7521] [ 216] [depth= 1] . ( 29 sec) [ -2441.6270] [ 216] [depth= 5] . ( 30 sec) [ -2441.5408] [ 216] [depth= 1] . ( 32 sec) [ -2440.0958] [ 216] [depth= 13] . ( 32 sec) [ -2439.9939] [ 216] [depth= 3] . ( 34 sec) [ -2439.0670] [ 216] [depth= 11] . ( 34 sec) [ -2434.1922] [ 215] [depth= 11] . ( 34 sec) [ -2433.9982] [ 215] [depth= 2] . ( 35 sec) [ -2433.9698] [ 215] [depth= 1] . ( 35 sec) [ -2433.9331] [ 215] [depth= 1] . ( 35 sec) [ -2433.9113] [ 215] [depth= 2] . ( 35 sec) [ -2433.8930] [ 215] [depth= 1] . ( 35 sec) [ -2433.8515] [ 215] [depth= 3] . ( 35 sec) [ -2432.5898] [ 215] [depth= 1] . ( 35 sec) [ -2432.0625] [ 214] [depth= 7] . ( 35 sec) [ -2427.9675] [ 213] [depth= 1] . ( 36 sec) [ -2427.9219] [ 213] [depth= 1] . ( 36 sec) [ -2427.8010] [ 213] [depth= 1] . ( 36 sec) [ -2427.7870] [ 213] [depth= 3] . ( 36 sec) [ -2427.7690] [ 213] [depth= 1] . ( 36 sec) [ -2427.7536] [ 213] [depth= 7] . ( 37 sec) [ -2427.6369] [ 213] [depth= 2] . ( 43 sec) [ -2427.6147] [ 213] [depth= 3] . ( 56 sec) [ -2426.4235] [ 213] [depth= 3] . ( 56 sec) [ -2424.8984] [ 213] [depth= 13] . ( 57 sec) [ -2424.8615] [ 213] [depth= 2] . ( 62 sec) [ -2423.9162] [ 213] [depth= 16] . ( 64 sec) [ -2423.9042] [ 213] [depth= 9] . ( 64 sec) [ -2423.8684] [ 213] [depth= 4] . ( 66 sec) [ -2423.8574] [ 213] [depth= 3] . ( 75 sec) [ -2423.8231] [ 213] [depth= 1] . ( 77 sec) [ -2423.7674] [ 213] [depth= 5] . ( 77 sec) [ -2423.1371] [ 213] [depth= 3] . ( 83 sec) [ -2423.0365] [ 213] [depth= 2] . ( 83 sec) [ -2420.3054] [Branch lengths ] . ( 84 sec) [ -2419.0140] [GTR parameters ] . ( 84 sec) [ -2416.5478] [Alpha ][ 0.146879] . ( 101 sec) [ -2416.5365] [ 213] [depth= 3] . ( 112 sec) [ -2416.0846] [ 213] [depth= 5] . ( 118 sec) [ -2415.4279] [ 213] [depth= 8] . ( 126 sec) [ -2415.4177] [ 213] [depth= 4] . ( 128 sec) [ -2414.9046] [ 213] [depth= 3] . ( 131 sec) [ -2414.8180] [ 213] [depth= 4] . ( 135 sec) [ -2414.6144] [ 213] [depth= 3] . ( 140 sec) [ -2414.5733] [ 213] [depth= 1] . ( 146 sec) [ -2414.3897] [ 213] [depth= 1] . ( 150 sec) [ -2414.3337] [ 213] [depth= 3] . ( 151 sec) [ -2413.2714] [ 213] [depth= 4] . ( 154 sec) [ -2413.2035] [ 213] [depth= 1] . ( 155 sec) [ -2413.1384] [ 213] [depth= 1] . ( 181 sec) [ -2412.9587] [Branch lengths ] . ( 182 sec) [ -2412.7355] [GTR parameters ] . ( 182 sec) [ -2412.7235] [Alpha ][ 0.140584] . ( 287 sec) [ -2412.7152] [Branch lengths ] . ( 318 sec) [ -2412.7145] [Branch lengths ] . ( 319 sec) [ -2412.7145] [Topology ] . ( 319 sec) [ -2412.7144] [Topology ] . ( 319 sec) [ -2412.7143] [GTR parameters ] . ( 319 sec) [ -2412.7141] [Alpha ][ 0.139770] . Checking for NNIs, optimizing five branches... . ( 323 sec) [ -2412.7114] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -2412.711441. . [Random start 4/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -6103.1170] [GTR parameters ] . ( 1 sec) [ -6014.0457] [Alpha ][ 0.500960] . ( 1 sec) [ -5942.6411] [ 479] [depth= 10] . ( 1 sec) [ -5773.9264] [ 466] [depth= 6] . ( 1 sec) [ -5745.0576] [ 463] [depth= 5] . ( 1 sec) [ -5733.9087] [ 461] [depth= 1] . ( 1 sec) [ -5717.0207] [ 458] [depth= 2] . ( 1 sec) [ -5710.2851] [ 458] [depth= 4] . ( 1 sec) [ -5686.8082] [ 454] [depth= 4] . ( 1 sec) [ -5683.1514] [ 454] [depth= 2] . ( 1 sec) [ -5649.8866] [ 453] [depth= 1] . ( 1 sec) [ -5634.9307] [ 453] [depth= 2] . ( 1 sec) [ -5609.2125] [ 452] [depth= 6] . ( 1 sec) [ -5609.0646] [ 452] [depth= 2] . ( 1 sec) [ -5595.8883] [ 451] [depth= 9] . ( 1 sec) [ -5566.7440] [ 451] [depth= 2] . ( 1 sec) [ -5546.1629] [ 450] [depth= 6] . ( 1 sec) [ -5542.0879] [ 450] [depth= 1] . ( 1 sec) [ -5483.6099] [ 449] [depth= 4] . ( 1 sec) [ -5480.3581] [ 449] [depth= 5] . ( 1 sec) [ -5470.4932] [ 449] [depth= 9] . ( 1 sec) [ -5459.8729] [ 449] [depth= 1] . ( 1 sec) [ -5375.8391] [ 447] [depth= 12] . ( 1 sec) [ -5258.6927] [ 447] [depth= 3] . ( 2 sec) [ -5203.5645] [ 435] [depth= 3] . ( 2 sec) [ -5016.1498] [ 423] [depth= 12] . ( 2 sec) [ -4967.2410] [ 423] [depth= 1] . ( 2 sec) [ -4959.5475] [ 422] [depth= 4] . ( 2 sec) [ -4899.2152] [ 412] [depth= 20] . ( 2 sec) [ -4894.0136] [ 412] [depth= 1] . ( 2 sec) [ -4852.3795] [ 412] [depth= 21] . ( 2 sec) [ -4851.8359] [ 412] [depth= 22] . ( 2 sec) [ -4834.3249] [ 409] [depth= 15] . ( 2 sec) [ -4779.1086] [ 408] [depth= 12] . ( 2 sec) [ -4778.9897] [ 408] [depth= 20] . ( 2 sec) [ -4778.8479] [ 408] [depth= 21] . ( 2 sec) [ -4766.5262] [ 407] [depth= 11] . ( 2 sec) [ -4752.4458] [ 408] [depth= 1] . ( 2 sec) [ -4693.1997] [ 400] [depth= 17] . ( 2 sec) [ -4599.2386] [ 394] [depth= 15] . ( 2 sec) [ -4500.7931] [ 394] [depth= 11] . ( 2 sec) [ -4474.4975] [ 391] [depth= 1] . ( 2 sec) [ -4473.6735] [ 391] [depth= 2] . ( 2 sec) [ -4355.9485] [ 394] [depth= 9] . ( 2 sec) [ -4288.0110] [ 394] [depth= 2] . ( 2 sec) [ -4285.6476] [ 393] [depth= 9] . ( 3 sec) [ -4273.1625] [ 397] [depth= 1] . ( 3 sec) [ -4160.6662] [ 391] [depth= 4] . ( 3 sec) [ -4158.9196] [ 391] [depth= 12] . ( 3 sec) [ -4135.9228] [ 390] [depth= 1] . ( 3 sec) [ -4104.8514] [ 390] [depth= 1] . ( 3 sec) [ -4103.0383] [ 388] [depth= 2] . ( 3 sec) [ -4094.3107] [ 387] [depth= 14] . ( 3 sec) [ -4060.5158] [ 381] [depth= 16] . ( 3 sec) [ -4055.1497] [ 381] [depth= 1] . ( 3 sec) [ -4042.9643] [ 380] [depth= 2] . ( 3 sec) [ -4011.7523] [ 378] [depth= 2] . ( 3 sec) [ -4010.7325] [ 378] [depth= 15] . ( 3 sec) [ -3979.7085] [ 377] [depth= 7] . ( 3 sec) [ -3968.9352] [ 377] [depth= 1] . ( 3 sec) [ -3968.2371] [ 377] [depth= 2] . ( 3 sec) [ -3966.0046] [ 377] [depth= 3] . ( 3 sec) [ -3952.6142] [ 373] [depth= 6] . ( 3 sec) [ -3937.7819] [ 370] [depth= 1] . ( 3 sec) [ -3872.5120] [ 362] [depth= 5] . ( 3 sec) [ -3864.5814] [ 362] [depth= 2] . ( 3 sec) [ -3855.8322] [ 361] [depth= 10] . ( 3 sec) [ -3624.7502] [ 357] [depth= 13] . ( 3 sec) [ -3617.2371] [ 353] [depth= 11] . ( 3 sec) [ -3617.0931] [ 353] [depth= 12] . ( 4 sec) [ -3613.0833] [ 353] [depth= 2] . ( 4 sec) [ -3613.0441] [ 353] [depth= 1] . ( 4 sec) [ -3584.9221] [ 351] [depth= 6] . ( 4 sec) [ -3537.3866] [ 347] [depth= 6] . ( 4 sec) [ -3519.8971] [ 346] [depth= 12] . ( 4 sec) [ -3493.6310] [ 342] [depth= 16] . ( 4 sec) [ -3471.2268] [ 340] [depth= 3] . ( 4 sec) [ -3470.6679] [ 340] [depth= 8] . ( 4 sec) [ -3470.4149] [ 340] [depth= 2] . ( 4 sec) [ -3465.2869] [ 340] [depth= 8] . ( 4 sec) [ -3464.7008] [ 340] [depth= 1] . ( 4 sec) [ -3450.3193] [ 338] [depth= 20] . ( 4 sec) [ -3449.1017] [ 338] [depth= 13] . ( 4 sec) [ -3437.4103] [ 338] [depth= 2] . ( 4 sec) [ -3386.6158] [ 331] [depth= 12] . ( 4 sec) [ -3347.4170] [ 323] [depth= 13] . ( 4 sec) [ -3339.8922] [ 322] [depth= 15] . ( 5 sec) [ -3339.4629] [ 322] [depth= 21] . ( 5 sec) [ -3339.4259] [ 322] [depth= 11] . ( 5 sec) [ -3312.5301] [ 319] [depth= 10] . ( 5 sec) [ -3284.2931] [ 317] [depth= 13] . ( 5 sec) [ -3270.4286] [ 316] [depth= 4] . ( 5 sec) [ -3268.3437] [ 316] [depth= 1] . ( 5 sec) [ -3262.5291] [ 316] [depth= 1] . ( 5 sec) [ -3253.1118] [ 314] [depth= 3] . ( 5 sec) [ -3250.8573] [ 314] [depth= 9] . ( 5 sec) [ -3222.1685] [ 313] [depth= 10] . ( 5 sec) [ -3213.0909] [ 310] [depth= 8] . ( 5 sec) [ -3212.7995] [ 310] [depth= 2] . ( 5 sec) [ -3201.4280] [ 309] [depth= 2] . ( 5 sec) [ -3193.3147] [ 307] [depth= 7] . ( 5 sec) [ -3193.2357] [ 307] [depth= 1] . ( 5 sec) [ -3184.6400] [ 305] [depth= 1] . ( 5 sec) [ -3184.2363] [ 305] [depth= 1] . ( 6 sec) [ -3160.8264] [ 302] [depth= 16] . ( 6 sec) [ -3152.8772] [ 300] [depth= 7] . ( 6 sec) [ -3150.3204] [ 302] [depth= 3] . ( 6 sec) [ -3131.6467] [ 298] [depth= 9] . ( 6 sec) [ -3109.9216] [ 291] [depth= 1] . ( 6 sec) [ -3103.0975] [ 290] [depth= 8] . ( 6 sec) [ -3101.1765] [ 289] [depth= 10] . ( 6 sec) [ -3080.8716] [ 288] [depth= 10] . ( 6 sec) [ -3047.5687] [ 278] [depth= 10] . ( 6 sec) [ -3046.2019] [ 278] [depth= 1] . ( 6 sec) [ -3045.9179] [ 278] [depth= 2] . ( 6 sec) [ -3045.8003] [ 278] [depth= 1] . ( 6 sec) [ -3045.4509] [ 278] [depth= 2] . ( 7 sec) [ -3038.4261] [ 277] [depth= 10] . ( 7 sec) [ -3038.3315] [ 277] [depth= 1] . ( 7 sec) [ -3038.1846] [ 277] [depth= 3] . ( 7 sec) [ -3023.1731] [ 276] [depth= 9] . ( 7 sec) [ -3022.2694] [ 276] [depth= 5] . ( 7 sec) [ -3018.8757] [ 276] [depth= 6] . ( 7 sec) [ -3007.5938] [ 274] [depth= 7] . ( 7 sec) [ -2993.3405] [ 275] [depth= 6] . ( 7 sec) [ -2983.2511] [ 273] [depth= 2] . ( 7 sec) [ -2982.2566] [ 273] [depth= 4] . ( 7 sec) [ -2963.2921] [ 272] [depth= 5] . ( 7 sec) [ -2951.5167] [ 268] [depth= 12] . ( 7 sec) [ -2899.7802] [ 264] [depth= 5] . ( 7 sec) [ -2894.7661] [ 263] [depth= 1] . ( 7 sec) [ -2890.4590] [ 261] [depth= 7] . ( 7 sec) [ -2890.1087] [ 261] [depth= 1] . ( 7 sec) [ -2879.6680] [ 260] [depth= 3] . ( 8 sec) [ -2879.2729] [ 260] [depth= 3] . ( 8 sec) [ -2872.9731] [ 260] [depth= 1] . ( 9 sec) [ -2872.4381] [ 260] [depth= 1] . ( 9 sec) [ -2846.9557] [ 257] [depth= 17] . ( 9 sec) [ -2821.8517] [ 253] [depth= 14] . ( 9 sec) [ -2821.0045] [ 253] [depth= 4] . ( 9 sec) [ -2814.9777] [ 253] [depth= 12] . ( 9 sec) [ -2812.8966] [ 251] [depth= 4] . ( 9 sec) [ -2811.8732] [ 251] [depth= 1] . ( 9 sec) [ -2811.6765] [ 251] [depth= 3] . ( 9 sec) [ -2804.9010] [ 250] [depth= 17] . ( 9 sec) [ -2804.8318] [ 250] [depth= 2] . ( 9 sec) [ -2799.4103] [ 250] [depth= 1] . ( 9 sec) [ -2799.3058] [ 251] [depth= 3] . ( 9 sec) [ -2786.5427] [ 249] [depth= 11] . ( 9 sec) [ -2786.0025] [ 248] [depth= 3] . ( 9 sec) [ -2772.4786] [ 248] [depth= 2] . ( 9 sec) [ -2755.2959] [ 245] [depth= 21] . ( 9 sec) [ -2741.0825] [ 243] [depth= 12] . ( 9 sec) [ -2727.2807] [ 241] [depth= 4] . ( 9 sec) [ -2726.4606] [ 240] [depth= 11] . ( 11 sec) [ -2724.4768] [ 239] [depth= 8] . ( 11 sec) [ -2715.2839] [ 239] [depth= 1] . ( 11 sec) [ -2715.2005] [ 239] [depth= 2] . ( 11 sec) [ -2714.6429] [ 239] [depth= 1] . ( 11 sec) [ -2711.0056] [ 238] [depth= 5] . ( 11 sec) [ -2710.3866] [ 238] [depth= 1] . ( 11 sec) [ -2695.5718] [ 236] [depth= 13] . ( 11 sec) [ -2684.3535] [ 235] [depth= 13] . ( 11 sec) [ -2684.2521] [ 235] [depth= 3] . ( 11 sec) [ -2682.5474] [ 236] [depth= 4] . ( 11 sec) [ -2682.3246] [ 236] [depth= 5] . ( 11 sec) [ -2681.3566] [ 235] [depth= 4] . ( 11 sec) [ -2680.8580] [ 235] [depth= 5] . ( 12 sec) [ -2680.6431] [ 235] [depth= 1] . ( 12 sec) [ -2671.3625] [ 234] [depth= 8] . ( 12 sec) [ -2669.0110] [ 234] [depth= 3] . ( 12 sec) [ -2667.4734] [ 234] [depth= 1] . ( 12 sec) [ -2654.1465] [ 232] [depth= 6] . ( 12 sec) [ -2653.1505] [ 232] [depth= 2] . ( 12 sec) [ -2643.3501] [ 230] [depth= 3] . ( 12 sec) [ -2632.9045] [ 229] [depth= 11] . ( 12 sec) [ -2632.7121] [ 229] [depth= 1] . ( 12 sec) [ -2632.5244] [ 229] [depth= 2] . ( 12 sec) [ -2632.4332] [ 229] [depth= 2] . ( 12 sec) [ -2632.4096] [ 229] [depth= 1] . ( 13 sec) [ -2626.0887] [ 228] [depth= 4] . ( 14 sec) [ -2626.0545] [ 228] [depth= 2] . ( 14 sec) [ -2621.9170] [ 227] [depth= 1] . ( 14 sec) [ -2614.1862] [ 226] [depth= 12] . ( 14 sec) [ -2614.1404] [ 226] [depth= 1] . ( 14 sec) [ -2610.1277] [ 226] [depth= 3] . ( 14 sec) [ -2609.9658] [ 226] [depth= 3] . ( 14 sec) [ -2609.9075] [ 226] [depth= 4] . ( 14 sec) [ -2609.8933] [ 226] [depth= 1] . ( 14 sec) [ -2602.7631] [ 225] [depth= 11] . ( 15 sec) [ -2600.1759] [ 224] [depth= 1] . ( 15 sec) [ -2567.9697] [Branch lengths ] . ( 16 sec) [ -2509.1015] [GTR parameters ] . ( 16 sec) [ -2495.9987] [Alpha ][ 0.250961] . ( 17 sec) [ -2492.9447] [ 223] [depth= 12] . ( 17 sec) [ -2483.5296] [ 221] [depth= 6] . ( 17 sec) [ -2478.9682] [ 221] [depth= 10] . ( 17 sec) [ -2478.9564] [ 221] [depth= 5] . ( 18 sec) [ -2478.6072] [ 221] [depth= 4] . ( 18 sec) [ -2478.4741] [ 221] [depth= 3] . ( 19 sec) [ -2477.2077] [ 220] [depth= 1] . ( 19 sec) [ -2469.0883] [ 219] [depth= 6] . ( 19 sec) [ -2469.0782] [ 219] [depth= 4] . ( 20 sec) [ -2468.8361] [ 219] [depth= 4] . ( 20 sec) [ -2468.6479] [ 219] [depth= 7] . ( 20 sec) [ -2468.6230] [ 219] [depth= 9] . ( 20 sec) [ -2460.8831] [ 218] [depth= 3] . ( 20 sec) [ -2459.1508] [ 218] [depth= 3] . ( 20 sec) [ -2451.3451] [ 215] [depth= 4] . ( 20 sec) [ -2446.0712] [ 215] [depth= 3] . ( 21 sec) [ -2446.0391] [ 215] [depth= 4] . ( 21 sec) [ -2442.1900] [ 215] [depth= 3] . ( 21 sec) [ -2441.5911] [ 215] [depth= 2] . ( 21 sec) [ -2441.4753] [ 215] [depth= 2] . ( 21 sec) [ -2441.2003] [ 215] [depth= 2] . ( 22 sec) [ -2441.1718] [ 215] [depth= 5] . ( 22 sec) [ -2441.0687] [ 215] [depth= 1] . ( 22 sec) [ -2440.4623] [ 215] [depth= 2] . ( 22 sec) [ -2440.4318] [ 215] [depth= 2] . ( 22 sec) [ -2440.3741] [ 215] [depth= 2] . ( 22 sec) [ -2439.3676] [ 215] [depth= 4] . ( 22 sec) [ -2439.3207] [ 215] [depth= 1] . ( 22 sec) [ -2439.2953] [ 215] [depth= 3] . ( 22 sec) [ -2439.2649] [ 215] [depth= 1] . ( 22 sec) [ -2437.9430] [ 215] [depth= 12] . ( 22 sec) [ -2435.4279] [ 214] [depth= 10] . ( 23 sec) [ -2435.3953] [ 214] [depth= 13] . ( 25 sec) [ -2434.5636] [ 214] [depth= 11] . ( 25 sec) [ -2434.2641] [ 214] [depth= 8] . ( 25 sec) [ -2434.1882] [ 214] [depth= 7] . ( 25 sec) [ -2434.0879] [ 214] [depth= 1] . ( 25 sec) [ -2433.8394] [ 214] [depth= 2] . ( 25 sec) [ -2433.8202] [ 214] [depth= 4] . ( 26 sec) [ -2433.7978] [ 214] [depth= 14] . ( 26 sec) [ -2433.7632] [ 214] [depth= 3] . ( 26 sec) [ -2433.7420] [ 214] [depth= 6] . ( 28 sec) [ -2433.6828] [ 214] [depth= 5] . ( 30 sec) [ -2433.6588] [ 214] [depth= 1] . ( 31 sec) [ -2431.6129] [ 214] [depth= 6] . ( 31 sec) [ -2431.6004] [ 214] [depth= 2] . ( 31 sec) [ -2431.5218] [ 214] [depth= 2] . ( 31 sec) [ -2431.5112] [ 214] [depth= 3] . ( 32 sec) [ -2430.8810] [ 214] [depth= 3] . ( 33 sec) [ -2430.8288] [ 214] [depth= 6] . ( 33 sec) [ -2430.7673] [ 214] [depth= 4] . ( 34 sec) [ -2430.7506] [ 214] [depth= 1] . ( 35 sec) [ -2429.9663] [ 214] [depth= 2] . ( 35 sec) [ -2429.8466] [ 214] [depth= 3] . ( 35 sec) [ -2429.3800] [ 214] [depth= 4] . ( 39 sec) [ -2428.1371] [ 214] [depth= 2] . ( 39 sec) [ -2427.9805] [ 214] [depth= 1] . ( 40 sec) [ -2427.9655] [ 214] [depth= 6] . ( 45 sec) [ -2425.3391] [ 214] [depth= 7] . ( 48 sec) [ -2425.3285] [ 214] [depth= 1] . ( 49 sec) [ -2425.2637] [ 214] [depth= 1] . ( 58 sec) [ -2418.7420] [ 213] [depth= 5] . ( 61 sec) [ -2417.5664] [ 212] [depth= 4] . ( 63 sec) [ -2417.4500] [ 212] [depth= 1] . ( 68 sec) [ -2417.4347] [ 212] [depth= 2] . ( 72 sec) [ -2417.3922] [ 212] [depth= 1] . ( 72 sec) [ -2417.1519] [ 212] [depth= 2] . ( 73 sec) [ -2417.1300] [ 212] [depth= 3] . ( 73 sec) [ -2417.1014] [ 212] [depth= 1] . ( 73 sec) [ -2416.9934] [ 212] [depth= 3] . ( 73 sec) [ -2416.9812] [ 212] [depth= 2] . ( 82 sec) [ -2416.4389] [Branch lengths ] . ( 82 sec) [ -2416.3336] [GTR parameters ] . ( 82 sec) [ -2413.6386] [Alpha ][ 0.139594] . ( 83 sec) [ -2413.6208] [ 212] [depth= 4] . ( 85 sec) [ -2413.4544] [ 212] [depth= 1] . ( 96 sec) [ -2413.3537] [ 212] [depth= 2] . ( 108 sec) [ -2413.3428] [ 212] [depth= 21] . ( 116 sec) [ -2412.8776] [ 212] [depth= 5] . ( 138 sec) [ -2412.3104] [ 212] [depth= 4] . ( 149 sec) [ -2412.1902] [ 212] [depth= 1] . ( 152 sec) [ -2412.1762] [ 212] [depth= 1] . ( 181 sec) [ -2409.9764] [ 211] [depth= 16] . ( 181 sec) [ -2409.5821] [Branch lengths ] . ( 182 sec) [ -2409.4199] [GTR parameters ] . ( 182 sec) [ -2409.4195] [Alpha ][ 0.140765] . ( 287 sec) [ -2409.4115] [Branch lengths ] . ( 318 sec) [ -2409.4114] [Branch lengths ] . ( 318 sec) [ -2409.4114] [Topology ] . ( 318 sec) [ -2409.4114] [Topology ] . ( 319 sec) [ -2409.4114] [GTR parameters ] . ( 319 sec) [ -2409.4114] [Alpha ][ 0.140547] . Checking for NNIs, optimizing five branches... . ( 323 sec) [ -2409.4113] [Topology ] . Checking for NNIs, optimizing five branches... . ( 327 sec) [ -2409.4111] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -2409.411146. . [Random start 5/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -6010.1919] [GTR parameters ] . ( 0 sec) [ -5924.4354] [Alpha ][ 0.500960] . ( 0 sec) [ -5768.0247] [ 482] [depth= 4] . ( 0 sec) [ -5626.1397] [ 468] [depth= 13] . ( 0 sec) [ -5624.1317] [ 468] [depth= 2] . ( 0 sec) [ -5603.7304] [ 468] [depth= 1] . ( 0 sec) [ -5571.6506] [ 467] [depth= 2] . ( 1 sec) [ -5515.9176] [ 467] [depth= 1] . ( 1 sec) [ -5463.0779] [ 467] [depth= 3] . ( 1 sec) [ -5452.4761] [ 465] [depth= 3] . ( 1 sec) [ -5428.0726] [ 465] [depth= 1] . ( 1 sec) [ -5402.1196] [ 464] [depth= 9] . ( 1 sec) [ -5360.4899] [ 464] [depth= 2] . ( 1 sec) [ -5322.7287] [ 464] [depth= 5] . ( 1 sec) [ -5255.8482] [ 464] [depth= 2] . ( 1 sec) [ -5242.7157] [ 464] [depth= 9] . ( 1 sec) [ -5240.0927] [ 464] [depth= 1] . ( 1 sec) [ -5176.0537] [ 464] [depth= 2] . ( 1 sec) [ -5169.8094] [ 464] [depth= 3] . ( 1 sec) [ -5096.5623] [ 463] [depth= 10] . ( 1 sec) [ -5094.7671] [ 463] [depth= 2] . ( 1 sec) [ -5020.2580] [ 461] [depth= 4] . ( 1 sec) [ -5018.5883] [ 461] [depth= 2] . ( 1 sec) [ -5007.0546] [ 461] [depth= 7] . ( 1 sec) [ -4974.2611] [ 456] [depth= 17] . ( 1 sec) [ -4874.0245] [ 443] [depth= 5] . ( 1 sec) [ -4595.3715] [ 443] [depth= 2] . ( 1 sec) [ -4515.5242] [ 443] [depth= 1] . ( 1 sec) [ -4501.2951] [ 441] [depth= 14] . ( 1 sec) [ -4499.0888] [ 440] [depth= 9] . ( 1 sec) [ -4498.8517] [ 440] [depth= 1] . ( 1 sec) [ -4483.8885] [ 437] [depth= 13] . ( 1 sec) [ -4462.2528] [ 436] [depth= 17] . ( 1 sec) [ -4432.7791] [ 436] [depth= 3] . ( 2 sec) [ -4415.7614] [ 436] [depth= 3] . ( 2 sec) [ -4378.2272] [ 434] [depth= 11] . ( 2 sec) [ -4377.6400] [ 434] [depth= 2] . ( 2 sec) [ -4373.2961] [ 434] [depth= 1] . ( 2 sec) [ -4346.4012] [ 430] [depth= 6] . ( 2 sec) [ -4323.7296] [ 423] [depth= 9] . ( 2 sec) [ -4320.3215] [ 422] [depth= 1] . ( 2 sec) [ -4285.7266] [ 418] [depth= 16] . ( 2 sec) [ -4234.0460] [ 406] [depth= 14] . ( 2 sec) [ -4189.8835] [ 399] [depth= 23] . ( 2 sec) [ -4166.5855] [ 395] [depth= 16] . ( 2 sec) [ -4157.8850] [ 393] [depth= 15] . ( 2 sec) [ -4154.8392] [ 393] [depth= 1] . ( 2 sec) [ -4126.7431] [ 388] [depth= 17] . ( 2 sec) [ -4089.4627] [ 388] [depth= 5] . ( 2 sec) [ -4062.3499] [ 384] [depth= 4] . ( 2 sec) [ -4059.0357] [ 384] [depth= 2] . ( 2 sec) [ -4040.7709] [ 384] [depth= 4] . ( 2 sec) [ -4001.5168] [ 377] [depth= 4] . ( 2 sec) [ -3995.5173] [ 376] [depth= 5] . ( 2 sec) [ -3988.7992] [ 376] [depth= 3] . ( 2 sec) [ -3976.6310] [ 373] [depth= 1] . ( 2 sec) [ -3975.2287] [ 373] [depth= 1] . ( 2 sec) [ -3972.3702] [ 372] [depth= 8] . ( 3 sec) [ -3969.2131] [ 369] [depth= 16] . ( 3 sec) [ -3961.9974] [ 369] [depth= 1] . ( 3 sec) [ -3931.7354] [ 363] [depth= 10] . ( 3 sec) [ -3916.0395] [ 361] [depth= 17] . ( 3 sec) [ -3915.4766] [ 361] [depth= 1] . ( 3 sec) [ -3915.4663] [ 361] [depth= 1] . ( 3 sec) [ -3897.4276] [ 360] [depth= 17] . ( 3 sec) [ -3863.1100] [ 360] [depth= 2] . ( 3 sec) [ -3839.1416] [ 359] [depth= 16] . ( 3 sec) [ -3838.3913] [ 359] [depth= 21] . ( 3 sec) [ -3527.7714] [ 363] [depth= 22] . ( 3 sec) [ -3512.4202] [ 361] [depth= 20] . ( 3 sec) [ -3490.2126] [ 358] [depth= 14] . ( 3 sec) [ -3489.8269] [ 358] [depth= 23] . ( 3 sec) [ -3480.5086] [ 357] [depth= 17] . ( 3 sec) [ -3452.4125] [ 353] [depth= 22] . ( 3 sec) [ -3448.7845] [ 352] [depth= 1] . ( 3 sec) [ -3429.6528] [ 347] [depth= 16] . ( 3 sec) [ -3424.7689] [ 347] [depth= 3] . ( 3 sec) [ -3411.4773] [ 346] [depth= 10] . ( 4 sec) [ -3411.2570] [ 346] [depth= 1] . ( 4 sec) [ -3410.9764] [ 346] [depth= 1] . ( 4 sec) [ -3410.8344] [ 346] [depth= 23] . ( 4 sec) [ -3406.0387] [ 346] [depth= 1] . ( 4 sec) [ -3338.0123] [ 332] [depth= 22] . ( 4 sec) [ -3316.2280] [ 332] [depth= 2] . ( 4 sec) [ -3260.0838] [ 326] [depth= 10] . ( 4 sec) [ -3257.7795] [ 326] [depth= 1] . ( 4 sec) [ -3256.8521] [ 326] [depth= 8] . ( 4 sec) [ -3235.0888] [ 321] [depth= 5] . ( 4 sec) [ -3215.0803] [ 319] [depth= 12] . ( 4 sec) [ -3204.6195] [ 317] [depth= 8] . ( 4 sec) [ -3203.6141] [ 317] [depth= 2] . ( 4 sec) [ -3186.9020] [ 309] [depth= 1] . ( 4 sec) [ -3183.9064] [ 308] [depth= 6] . ( 4 sec) [ -3177.4725] [ 308] [depth= 8] . ( 4 sec) [ -3172.2259] [ 310] [depth= 11] . ( 4 sec) [ -3170.8176] [ 310] [depth= 8] . ( 4 sec) [ -3158.2336] [ 309] [depth= 6] . ( 4 sec) [ -3153.0357] [ 309] [depth= 5] . ( 4 sec) [ -3150.3516] [ 309] [depth= 23] . ( 4 sec) [ -3142.9506] [ 308] [depth= 12] . ( 4 sec) [ -3109.9637] [ 305] [depth= 5] . ( 5 sec) [ -3096.2533] [ 305] [depth= 1] . ( 5 sec) [ -3094.1534] [ 305] [depth= 1] . ( 5 sec) [ -3074.9277] [ 305] [depth= 18] . ( 5 sec) [ -3073.8090] [ 305] [depth= 19] . ( 5 sec) [ -3073.3745] [ 305] [depth= 1] . ( 5 sec) [ -3062.2410] [ 300] [depth= 4] . ( 5 sec) [ -3061.4621] [ 300] [depth= 2] . ( 5 sec) [ -3038.5574] [ 298] [depth= 5] . ( 5 sec) [ -3038.0612] [ 298] [depth= 1] . ( 5 sec) [ -3037.5686] [ 298] [depth= 1] . ( 5 sec) [ -3009.3243] [ 295] [depth= 10] . ( 5 sec) [ -2998.1430] [ 295] [depth= 22] . ( 5 sec) [ -2966.5125] [ 295] [depth= 19] . ( 6 sec) [ -2966.3346] [ 295] [depth= 5] . ( 6 sec) [ -2965.3984] [ 295] [depth= 3] . ( 6 sec) [ -2963.1785] [ 295] [depth= 20] . ( 6 sec) [ -2962.3209] [ 294] [depth= 3] . ( 6 sec) [ -2960.8936] [ 292] [depth= 16] . ( 6 sec) [ -2942.3622] [ 292] [depth= 4] . ( 6 sec) [ -2939.5911] [ 292] [depth= 1] . ( 6 sec) [ -2937.8583] [ 292] [depth= 11] . ( 6 sec) [ -2935.0109] [ 292] [depth= 2] . ( 6 sec) [ -2917.6710] [ 289] [depth= 15] . ( 7 sec) [ -2902.4068] [ 287] [depth= 5] . ( 7 sec) [ -2900.9533] [ 286] [depth= 17] . ( 7 sec) [ -2900.2617] [ 286] [depth= 1] . ( 7 sec) [ -2891.9014] [ 285] [depth= 3] . ( 8 sec) [ -2876.1468] [ 280] [depth= 5] . ( 8 sec) [ -2875.7502] [ 280] [depth= 1] . ( 8 sec) [ -2875.6474] [ 280] [depth= 2] . ( 8 sec) [ -2875.2545] [ 280] [depth= 9] . ( 8 sec) [ -2872.1777] [ 276] [depth= 1] . ( 8 sec) [ -2864.4890] [ 275] [depth= 8] . ( 8 sec) [ -2857.2322] [ 274] [depth= 19] . ( 8 sec) [ -2847.2161] [ 272] [depth= 17] . ( 8 sec) [ -2838.8675] [ 271] [depth= 18] . ( 8 sec) [ -2825.1105] [ 269] [depth= 11] . ( 8 sec) [ -2818.2088] [ 268] [depth= 19] . ( 8 sec) [ -2818.1563] [ 268] [depth= 8] . ( 9 sec) [ -2814.3457] [ 267] [depth= 3] . ( 9 sec) [ -2805.1401] [ 266] [depth= 11] . ( 9 sec) [ -2800.8719] [ 266] [depth= 2] . ( 9 sec) [ -2799.7485] [ 266] [depth= 5] . ( 9 sec) [ -2750.2585] [ 253] [depth= 6] . ( 9 sec) [ -2750.0508] [ 253] [depth= 4] . ( 9 sec) [ -2749.7659] [ 253] [depth= 4] . ( 9 sec) [ -2738.2105] [ 252] [depth= 7] . ( 10 sec) [ -2737.8860] [ 252] [depth= 3] . ( 10 sec) [ -2718.3956] [ 249] [depth= 2] . ( 10 sec) [ -2715.2146] [ 249] [depth= 12] . ( 10 sec) [ -2714.8347] [ 249] [depth= 1] . ( 10 sec) [ -2714.7886] [ 249] [depth= 7] . ( 10 sec) [ -2705.9877] [ 247] [depth= 14] . ( 10 sec) [ -2705.2980] [ 247] [depth= 4] . ( 10 sec) [ -2698.4928] [ 246] [depth= 3] . ( 10 sec) [ -2698.4397] [ 246] [depth= 1] . ( 10 sec) [ -2698.2463] [ 246] [depth= 3] . ( 11 sec) [ -2697.5483] [ 246] [depth= 4] . ( 11 sec) [ -2693.4515] [ 247] [depth= 4] . ( 11 sec) [ -2693.2113] [ 247] [depth= 2] . ( 11 sec) [ -2688.3565] [ 247] [depth= 4] . ( 11 sec) [ -2685.7802] [ 247] [depth= 2] . ( 11 sec) [ -2685.7051] [ 247] [depth= 1] . ( 11 sec) [ -2679.4313] [ 246] [depth= 3] . ( 11 sec) [ -2679.1649] [ 246] [depth= 4] . ( 11 sec) [ -2677.0746] [ 246] [depth= 2] . ( 11 sec) [ -2654.2596] [ 243] [depth= 4] . ( 11 sec) [ -2654.1890] [ 243] [depth= 3] . ( 11 sec) [ -2644.7846] [ 241] [depth= 7] . ( 11 sec) [ -2643.2710] [ 241] [depth= 3] . ( 11 sec) [ -2638.0358] [ 237] [depth= 7] . ( 12 sec) [ -2637.6185] [ 237] [depth= 4] . ( 12 sec) [ -2632.1662] [ 236] [depth= 10] . ( 12 sec) [ -2628.1640] [ 236] [depth= 4] . ( 12 sec) [ -2607.4096] [ 233] [depth= 3] . ( 12 sec) [ -2594.0125] [ 231] [depth= 9] . ( 12 sec) [ -2583.0536] [ 230] [depth= 6] . ( 12 sec) [ -2582.9711] [ 230] [depth= 1] . ( 12 sec) [ -2582.6767] [ 230] [depth= 5] . ( 12 sec) [ -2582.2302] [ 229] [depth= 7] . ( 12 sec) [ -2582.1573] [ 229] [depth= 1] . ( 12 sec) [ -2581.7418] [ 229] [depth= 3] . ( 12 sec) [ -2581.7261] [ 229] [depth= 1] . ( 13 sec) [ -2581.6336] [ 229] [depth= 4] . ( 13 sec) [ -2578.0115] [ 229] [depth= 7] . ( 13 sec) [ -2575.3850] [ 229] [depth= 4] . ( 13 sec) [ -2575.3328] [ 229] [depth= 12] . ( 13 sec) [ -2568.4869] [ 228] [depth= 12] . ( 13 sec) [ -2563.6869] [ 228] [depth= 10] . ( 13 sec) [ -2541.8256] [Branch lengths ] . ( 15 sec) [ -2519.8021] [GTR parameters ] . ( 16 sec) [ -2506.1428] [Alpha ][ 0.250961] . ( 16 sec) [ -2505.2669] [ 228] [depth= 5] . ( 17 sec) [ -2504.4807] [ 228] [depth= 7] . ( 18 sec) [ -2504.2397] [ 228] [depth= 1] . ( 20 sec) [ -2503.6757] [ 228] [depth= 1] . ( 21 sec) [ -2485.6499] [ 225] [depth= 8] . ( 22 sec) [ -2481.2363] [ 224] [depth= 3] . ( 23 sec) [ -2481.1766] [ 224] [depth= 4] . ( 24 sec) [ -2480.5780] [ 224] [depth= 4] . ( 24 sec) [ -2471.9142] [ 222] [depth= 1] . ( 24 sec) [ -2471.8976] [ 222] [depth= 6] . ( 24 sec) [ -2467.8835] [ 221] [depth= 12] . ( 25 sec) [ -2460.4227] [ 220] [depth= 3] . ( 27 sec) [ -2460.3657] [ 220] [depth= 4] . ( 28 sec) [ -2452.1262] [ 218] [depth= 7] . ( 28 sec) [ -2451.4900] [ 218] [depth= 6] . ( 29 sec) [ -2446.1183] [ 217] [depth= 5] . ( 29 sec) [ -2446.1030] [ 217] [depth= 5] . ( 29 sec) [ -2446.0854] [ 217] [depth= 11] . ( 30 sec) [ -2441.8203] [ 216] [depth= 3] . ( 30 sec) [ -2440.4958] [ 216] [depth= 7] . ( 31 sec) [ -2440.4760] [ 216] [depth= 5] . ( 31 sec) [ -2440.4552] [ 216] [depth= 1] . ( 31 sec) [ -2440.1929] [ 216] [depth= 3] . ( 31 sec) [ -2440.1781] [ 216] [depth= 5] . ( 34 sec) [ -2440.0617] [ 215] [depth= 3] . ( 38 sec) [ -2440.0007] [ 215] [depth= 1] . ( 38 sec) [ -2439.9838] [ 215] [depth= 5] . ( 38 sec) [ -2439.6234] [ 215] [depth= 1] . ( 39 sec) [ -2439.6010] [ 215] [depth= 2] . ( 39 sec) [ -2438.6671] [ 215] [depth= 1] . ( 39 sec) [ -2437.8547] [ 215] [depth= 1] . ( 42 sec) [ -2437.8119] [ 215] [depth= 2] . ( 42 sec) [ -2437.6875] [ 215] [depth= 2] . ( 43 sec) [ -2437.6346] [ 215] [depth= 4] . ( 43 sec) [ -2437.5354] [ 215] [depth= 2] . ( 44 sec) [ -2428.3379] [ 214] [depth= 13] . ( 46 sec) [ -2426.9051] [ 214] [depth= 7] . ( 46 sec) [ -2420.7436] [ 213] [depth= 5] . ( 47 sec) [ -2420.7333] [ 213] [depth= 6] . ( 47 sec) [ -2420.7181] [ 213] [depth= 16] . ( 47 sec) [ -2417.9342] [ 212] [depth= 6] . ( 48 sec) [ -2414.9992] [ 211] [depth= 10] . ( 48 sec) [ -2414.8770] [ 211] [depth= 2] . ( 52 sec) [ -2414.8598] [ 211] [depth= 1] . ( 54 sec) [ -2414.7639] [ 211] [depth= 1] . ( 55 sec) [ -2414.5290] [ 211] [depth= 2] . ( 71 sec) [ -2414.4434] [ 211] [depth= 1] . ( 71 sec) [ -2414.4283] [ 211] [depth= 3] . ( 72 sec) [ -2414.4136] [ 211] [depth= 3] . ( 75 sec) [ -2414.1659] [ 211] [depth= 1] . ( 77 sec) [ -2414.1552] [ 211] [depth= 2] . ( 83 sec) [ -2414.1437] [ 211] [depth= 3] . ( 87 sec) [ -2413.6955] [ 211] [depth= 5] . ( 87 sec) [ -2412.4667] [Branch lengths ] . ( 89 sec) [ -2411.7134] [GTR parameters ] . ( 90 sec) [ -2409.2386] [Alpha ][ 0.143053] . ( 95 sec) [ -2409.2281] [ 211] [depth= 1] . ( 142 sec) [ -2409.2105] [ 211] [depth= 3] . ( 194 sec) [ -2409.1549] [Branch lengths ] . ( 196 sec) [ -2409.1358] [GTR parameters ] . ( 196 sec) [ -2409.1325] [Alpha ][ 0.139791] . ( 227 sec) [ -2409.1301] [Branch lengths ] . ( 227 sec) [ -2409.1301] [Topology ] . ( 228 sec) [ -2409.1300] [Topology ] . ( 229 sec) [ -2409.1293] [GTR parameters ] . ( 229 sec) [ -2409.1293] [Alpha ][ 0.139269] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -2409.129254. . Computing pairwise distances... . Building BioNJ tree... . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -2523.3266] [GTR parameters ] . ( 1 sec) [ -2508.5261] [Alpha ][ 0.500960] . ( 1 sec) [ -2508.5261] [Topology ] . ( 1 sec) [ -2475.2275] [Topology ] . ( 2 sec) [ -2462.5552] [Topology ] . ( 3 sec) [ -2464.0611] [Topology ] . Moving backward . ( 3 sec) [ -2459.8744] [Topology ] . ( 4 sec) [ -2457.8355] [Topology ] . ( 4 sec) [ -2460.3467] [Topology ] . Moving backward . ( 4 sec) [ -2456.9884] [Topology ] . ( 5 sec) [ -2458.0589] [Topology ] . Moving backward . ( 5 sec) [ -2456.2108] [Topology ] . ( 6 sec) [ -2455.5442] [GTR parameters ] . ( 6 sec) [ -2444.5627] [Alpha ][ 0.250961] . ( 6 sec) [ -2444.5627] [Topology ] . ( 7 sec) [ -2443.3022] [Topology ] . ( 8 sec) [ -2442.5524] [Topology ] . ( 8 sec) [ -2443.1700] [Topology ] . Moving backward . ( 8 sec) [ -2441.1183] [Topology ] . ( 9 sec) [ -2440.9937] [Topology ] . ( 10 sec) [ -2441.5182] [Topology ] . Moving backward . ( 10 sec) [ -2440.8971] [Topology ] . ( 10 sec) [ -2440.8978] [Topology ] . Checking for NNIs, optimizing five branches... . ( 14 sec) [ -2440.0218] [Topology ] . ( 14 sec) [ -2439.6357] [GTR parameters ] . ( 14 sec) [ -2436.5083] [Alpha ][ 0.134987] . ( 15 sec) [ -2436.5083] [Topology ] . ( 15 sec) [ -2436.5113] [Topology ] . Moving backward . ( 15 sec) [ -2436.2451] [Topology ] . ( 16 sec) [ -2436.0366] [Topology ] . ( 16 sec) [ -2436.0412] [Topology ] . Moving backward . ( 16 sec) [ -2435.9470] [Topology ] . ( 17 sec) [ -2435.8884] [Topology ] . ( 17 sec) [ -2435.8703] [Topology ] . ( 18 sec) [ -2435.8875] [Topology ] . Checking for NNIs, optimizing five branches... . ( 22 sec) [ -2435.8493] [Topology ] . ( 22 sec) [ -2435.8262] [GTR parameters ] . ( 22 sec) [ -2435.8248] [Alpha ][ 0.132931] . ( 22 sec) [ -2435.8248] [Topology ] . ( 23 sec) [ -2435.8227] [Topology ] . ( 23 sec) [ -2435.8221] [Topology ] . Checking for NNIs, optimizing five branches... . ( 27 sec) [ -2435.8186] [Topology ] . ( 27 sec) [ -2435.8186] [GTR parameters ] . ( 27 sec) [ -2435.8186] [Alpha ][ 0.132798] . ( 27 sec) [ -2435.8186] [Topology ] . ( 28 sec) [ -2435.8197] [Topology ] . Moving backward . ( 28 sec) [ -2435.8164] [Topology ] . ( 29 sec) [ -2435.8159] [Topology ] . Checking for NNIs, optimizing five branches... . ( 32 sec) [ -2435.8152] [Topology ] . ( 33 sec) [ -2435.8152] [GTR parameters ] . ( 33 sec) [ -2435.8152] [Alpha ][ 0.132931] . ( 33 sec) [ -2435.8152] [Topology ] . ( 33 sec) [ -2435.8164] [Topology ] . Moving backward . ( 33 sec) [ -2435.8143] [Topology ] . Checking for NNIs, optimizing five branches... . ( 37 sec) [ -2435.8113] [Topology ] . ( 37 sec) [ -2435.8113] [GTR parameters ] . ( 37 sec) [ -2435.8113] [Alpha ][ 0.132798] . ( 37 sec) [ -2435.8113] [Topology ] . ( 38 sec) [ -2435.8113] [Topology ] . Checking for NNIs, optimizing five branches... . ( 42 sec) [ -2435.8086] [Topology ] . ( 42 sec) [ -2435.8086] [GTR parameters ] . ( 42 sec) [ -2435.8086] [Alpha ][ 0.132931] . ( 42 sec) [ -2435.8086] [Topology ] . ( 42 sec) [ -2435.8118] [Topology ] . Moving backward . ( 42 sec) [ -2435.8072] [Topology ] . ( 43 sec) [ -2435.8081] [Topology ] . Checking for NNIs, optimizing five branches... . ( 47 sec) [ -2435.8019] [Topology ] . ( 47 sec) [ -2435.8019] [GTR parameters ] . ( 47 sec) [ -2435.8019] [Alpha ][ 0.132931] . ( 47 sec) [ -2435.8019] [Topology ] . ( 48 sec) [ -2435.8123] [Topology ] . Moving backward . ( 48 sec) [ -2435.7996] [Topology ] . ( 48 sec) [ -2435.8038] [Topology ] . Moving backward . ( 48 sec) [ -2435.7986] [Topology ] . ( 49 sec) [ -2435.8010] [Topology ] . Moving backward . ( 49 sec) [ -2435.7975] [Topology ] . ( 49 sec) [ -2435.7982] [Topology ] . Checking for NNIs, optimizing five branches... . ( 53 sec) [ -2435.7982] [GTR parameters ] . ( 53 sec) [ -2435.7982] [Alpha ][ 0.132931] . ( 53 sec) [ -2435.7982] [Topology ] . ( 54 sec) [ -2435.8118] [Topology ] . Moving backward . ( 54 sec) [ -2435.7956] [Topology ] . ( 55 sec) [ -2435.8064] [Topology ] . Moving backward . ( 55 sec) [ -2435.7951] [Topology ] . Checking for NNIs, optimizing five branches... . ( 59 sec) [ -2435.7951] [GTR parameters ] . ( 59 sec) [ -2435.7951] [Alpha ][ 0.132931] . ( 59 sec) [ -2435.7951] [Topology ] . ( 59 sec) [ -2435.8065] [Topology ] . Moving backward . ( 59 sec) [ -2435.7933] [Topology ] . ( 60 sec) [ -2435.7992] [Topology ] . Moving backward . ( 60 sec) [ -2435.7918] [Topology ] . ( 60 sec) [ -2435.7972] [Topology ] . Moving backward . ( 60 sec) [ -2435.7901] [Topology ] . ( 61 sec) [ -2435.7924] [Topology ] . Moving backward . ( 61 sec) [ -2435.7884] [Topology ] . ( 61 sec) [ -2435.7899] [Topology ] . Moving backward . Checking for NNIs, optimizing five branches... . ( 65 sec) [ -2435.7866] [GTR parameters ] . ( 66 sec) [ -2435.7866] [Alpha ][ 0.132785] . ( 66 sec) [ -2435.7866] [Topology ] . ( 66 sec) [ -2435.7863] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 75 sec) [ -2523.3266] [GTR parameters ] . ( 75 sec) [ -2508.5261] [Alpha ][ 0.500960] . ( 75 sec) [ -2507.9522] [ 220] [depth= 1] . ( 75 sec) [ -2507.8060] [ 220] [depth= 1] . ( 75 sec) [ -2507.6883] [ 220] [depth= 1] . ( 76 sec) [ -2502.5950] [ 220] [depth= 1] . ( 76 sec) [ -2502.4563] [ 220] [depth= 1] . ( 76 sec) [ -2501.6969] [ 220] [depth= 14] . ( 76 sec) [ -2499.2974] [ 220] [depth= 14] . ( 76 sec) [ -2499.2829] [ 220] [depth= 2] . ( 76 sec) [ -2499.2106] [ 220] [depth= 1] . ( 76 sec) [ -2499.0270] [ 220] [depth= 3] . ( 79 sec) [ -2498.9641] [ 220] [depth= 1] . ( 80 sec) [ -2498.9230] [ 220] [depth= 1] . ( 80 sec) [ -2498.5762] [ 220] [depth= 2] . ( 80 sec) [ -2493.9000] [ 219] [depth= 5] . ( 80 sec) [ -2490.6073] [ 220] [depth= 1] . ( 80 sec) [ -2486.8545] [ 219] [depth= 2] . ( 81 sec) [ -2486.8427] [ 219] [depth= 2] . ( 82 sec) [ -2486.8268] [ 219] [depth= 2] . ( 83 sec) [ -2486.7895] [ 219] [depth= 5] . ( 83 sec) [ -2486.6785] [ 219] [depth= 1] . ( 83 sec) [ -2486.6421] [ 219] [depth= 1] . ( 84 sec) [ -2486.5227] [ 219] [depth= 2] . ( 84 sec) [ -2486.5082] [ 219] [depth= 1] . ( 84 sec) [ -2486.4944] [ 219] [depth= 3] . ( 84 sec) [ -2485.6728] [ 219] [depth= 1] . ( 84 sec) [ -2485.0316] [ 219] [depth= 7] . ( 87 sec) [ -2485.0192] [ 219] [depth= 1] . ( 87 sec) [ -2484.4731] [ 219] [depth= 1] . ( 87 sec) [ -2484.4189] [ 219] [depth= 2] . ( 88 sec) [ -2484.4081] [ 219] [depth= 3] . ( 90 sec) [ -2478.0949] [ 218] [depth= 3] . ( 90 sec) [ -2470.8201] [ 217] [depth= 2] . ( 90 sec) [ -2467.3365] [ 216] [depth= 5] . ( 90 sec) [ -2467.2687] [ 216] [depth= 1] . ( 91 sec) [ -2466.3055] [ 217] [depth= 9] . ( 91 sec) [ -2465.5980] [ 217] [depth= 3] . ( 91 sec) [ -2464.7526] [ 217] [depth= 2] . ( 91 sec) [ -2464.7013] [ 217] [depth= 3] . ( 93 sec) [ -2464.3189] [ 217] [depth= 1] . ( 93 sec) [ -2461.9022] [ 216] [depth= 2] . ( 93 sec) [ -2461.8069] [ 216] [depth= 1] . ( 93 sec) [ -2461.7736] [ 216] [depth= 1] . ( 93 sec) [ -2461.7267] [ 216] [depth= 1] . ( 94 sec) [ -2461.6491] [ 216] [depth= 1] . ( 94 sec) [ -2461.6263] [ 216] [depth= 2] . ( 94 sec) [ -2461.4371] [ 216] [depth= 1] . ( 95 sec) [ -2461.2028] [ 216] [depth= 1] . ( 95 sec) [ -2461.0374] [ 216] [depth= 1] . ( 95 sec) [ -2460.8894] [ 216] [depth= 1] . ( 95 sec) [ -2460.8142] [ 216] [depth= 1] . ( 96 sec) [ -2460.2988] [ 216] [depth= 1] . ( 96 sec) [ -2459.7757] [ 216] [depth= 2] . ( 96 sec) [ -2459.7631] [ 216] [depth= 8] . ( 96 sec) [ -2459.5043] [ 216] [depth= 1] . ( 96 sec) [ -2459.4650] [ 216] [depth= 7] . ( 96 sec) [ -2459.4326] [ 216] [depth= 3] . ( 98 sec) [ -2459.3180] [ 216] [depth= 1] . ( 98 sec) [ -2458.4602] [ 216] [depth= 3] . ( 98 sec) [ -2458.1933] [ 216] [depth= 1] . ( 98 sec) [ -2457.8450] [ 216] [depth= 1] . ( 98 sec) [ -2457.8150] [ 216] [depth= 3] . ( 98 sec) [ -2457.6805] [ 216] [depth= 1] . ( 99 sec) [ -2456.9841] [ 216] [depth= 1] . ( 99 sec) [ -2456.8077] [ 216] [depth= 2] . ( 99 sec) [ -2456.7875] [ 216] [depth= 3] . ( 99 sec) [ -2452.9624] [ 215] [depth= 2] . ( 99 sec) [ -2447.2998] [ 214] [depth= 8] . ( 101 sec) [ -2447.2558] [ 214] [depth= 2] . ( 101 sec) [ -2447.1794] [ 214] [depth= 1] . ( 101 sec) [ -2446.6899] [ 214] [depth= 2] . ( 101 sec) [ -2446.6593] [ 214] [depth= 3] . ( 102 sec) [ -2446.4529] [ 214] [depth= 3] . ( 102 sec) [ -2445.8783] [ 214] [depth= 1] . ( 103 sec) [ -2445.7083] [ 214] [depth= 1] . ( 103 sec) [ -2445.5797] [ 214] [depth= 1] . ( 103 sec) [ -2445.2678] [ 214] [depth= 1] . ( 103 sec) [ -2437.4175] [ 213] [depth= 4] . ( 103 sec) [ -2437.3278] [ 213] [depth= 3] . ( 103 sec) [ -2437.2769] [ 213] [depth= 5] . ( 103 sec) [ -2437.1724] [ 213] [depth= 4] . ( 103 sec) [ -2437.1210] [ 213] [depth= 1] . ( 104 sec) [ -2435.5209] [ 213] [depth= 1] . ( 104 sec) [ -2435.4109] [ 213] [depth= 6] . ( 104 sec) [ -2435.3167] [ 213] [depth= 2] . ( 104 sec) [ -2435.2564] [ 213] [depth= 1] . ( 104 sec) [ -2435.2373] [ 213] [depth= 1] . ( 104 sec) [ -2435.2068] [ 213] [depth= 3] . ( 104 sec) [ -2435.1556] [ 213] [depth= 4] . ( 105 sec) [ -2435.1408] [ 213] [depth= 8] . ( 107 sec) [ -2435.1228] [ 213] [depth= 2] . ( 107 sec) [ -2435.1046] [ 213] [depth= 5] . ( 107 sec) [ -2435.0553] [ 213] [depth= 5] . ( 108 sec) [ -2435.0453] [ 213] [depth= 3] . ( 108 sec) [ -2434.9670] [ 213] [depth= 2] . ( 108 sec) [ -2434.9146] [ 213] [depth= 3] . ( 108 sec) [ -2434.9029] [ 213] [depth= 7] . ( 109 sec) [ -2434.8885] [ 213] [depth= 7] . ( 110 sec) [ -2434.8405] [ 213] [depth= 9] . ( 111 sec) [ -2434.2609] [ 213] [depth= 2] . ( 112 sec) [ -2434.1424] [ 213] [depth= 8] . ( 114 sec) [ -2434.1309] [ 213] [depth= 2] . ( 114 sec) [ -2434.1164] [ 213] [depth= 2] . ( 117 sec) [ -2431.5404] [Branch lengths ] . ( 117 sec) [ -2431.5221] [GTR parameters ] . ( 117 sec) [ -2421.4796] [Alpha ][ 0.250961] . ( 117 sec) [ -2421.4673] [ 213] [depth= 1] . ( 138 sec) [ -2421.0805] [ 213] [depth= 7] . ( 139 sec) [ -2421.0393] [ 213] [depth= 1] . ( 146 sec) [ -2417.4997] [ 212] [depth= 11] . ( 154 sec) [ -2417.2747] [ 212] [depth= 5] . ( 154 sec) [ -2417.1760] [ 212] [depth= 1] . ( 155 sec) [ -2416.7776] [ 212] [depth= 14] . ( 163 sec) [ -2416.7586] [ 212] [depth= 5] . ( 165 sec) [ -2416.7343] [ 212] [depth= 12] . ( 169 sec) [ -2416.6744] [ 212] [depth= 3] . ( 179 sec) [ -2415.5493] [ 212] [depth= 1] . ( 187 sec) [ -2415.5381] [ 212] [depth= 2] . ( 215 sec) [ -2415.1227] [Branch lengths ] . ( 215 sec) [ -2415.0514] [GTR parameters ] . ( 216 sec) [ -2412.5767] [Alpha ][ 0.143038] . ( 248 sec) [ -2410.9826] [ 212] [depth= 5] . ( 249 sec) [ -2410.9302] [ 212] [depth= 2] . ( 264 sec) [ -2409.7826] [ 211] [depth= 13] . ( 286 sec) [ -2409.7724] [ 211] [depth= 4] . ( 297 sec) [ -2409.7589] [ 211] [depth= 5] . ( 297 sec) [ -2409.7289] [ 211] [depth= 5] . ( 297 sec) [ -2409.6806] [ 211] [depth= 1] . ( 302 sec) [ -2409.6469] [ 211] [depth= 3] . ( 306 sec) [ -2409.6369] [ 211] [depth= 1] . ( 310 sec) [ -2409.5571] [Branch lengths ] . ( 311 sec) [ -2409.4409] [GTR parameters ] . ( 311 sec) [ -2409.4397] [Alpha ][ 0.141094] . ( 384 sec) [ -2409.4205] [ 211] [depth= 6] . ( 412 sec) [ -2409.4187] [Branch lengths ] . ( 412 sec) [ -2409.4186] [GTR parameters ] . ( 412 sec) [ -2409.4186] [Alpha ][ 0.140735] . ( 444 sec) [ -2409.4185] [Branch lengths ] . ( 444 sec) [ -2409.4185] [Topology ] . ( 444 sec) [ -2409.4185] [Topology ] . ( 444 sec) [ -2409.4185] [GTR parameters ] . ( 444 sec) [ -2409.4185] [Alpha ][ 0.140594] . Checking for NNIs, optimizing five branches... . ( 448 sec) [ -2409.4184] [Topology ] . Checking for NNIs, optimizing five branches... . ( 452 sec) [ -2409.4177] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -2435.786324 . Log likelihood obtained after SPR moves : -2409.417748 . Log likelihood of the current tree: -2409.417748. . Printing the most likely tree in file 'nucleic_M2913_81x897_2006.phy_phyml_tree.txt'... . Best log likelihood : -2409.129254 . Time used 0h7m37s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 1971.08user 0.00system 33:26.99elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps