.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : nucleic_M2916_143x897_2006.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : yes . Number of random starting trees : 5 . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . 73 sites are made from completely undetermined states ('X', '-', '?' or 'N')... . Compressing sequences... . 303 patterns found. (out of a total of 897 sites) . 620 sites without polymorphism (69.12%). . [Random start 1/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . This analysis requires at least 23Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 4 sec) [ -13822.8130] [GTR parameters ] . ( 4 sec) [ -13575.6363] [Alpha ][ 0.500960] . ( 4 sec) [ -13529.5566] [ 1213] [depth= 7] . ( 4 sec) [ -13047.8319] [ 1206] [depth= 8] . ( 4 sec) [ -13032.8302] [ 1206] [depth= 1] . ( 4 sec) [ -13032.7748] [ 1206] [depth= 6] . ( 4 sec) [ -13013.5725] [ 1206] [depth= 2] . ( 5 sec) [ -12952.9869] [ 1205] [depth= 6] . ( 5 sec) [ -12907.5588] [ 1204] [depth= 5] . ( 5 sec) [ -12901.1092] [ 1203] [depth= 12] . ( 5 sec) [ -12894.1548] [ 1202] [depth= 3] . ( 5 sec) [ -12889.3415] [ 1202] [depth= 1] . ( 5 sec) [ -12876.9503] [ 1201] [depth= 4] . ( 5 sec) [ -12876.4420] [ 1201] [depth= 1] . ( 5 sec) [ -12867.6695] [ 1201] [depth= 3] . ( 5 sec) [ -12788.8753] [ 1201] [depth= 6] . ( 5 sec) [ -12775.8697] [ 1201] [depth= 8] . ( 5 sec) [ -12759.7630] [ 1201] [depth= 4] . ( 5 sec) [ -12738.1277] [ 1193] [depth= 5] . ( 6 sec) [ -12681.9864] [ 1193] [depth= 1] . ( 6 sec) [ -12656.8575] [ 1191] [depth= 4] . ( 6 sec) [ -12367.1686] [ 1191] [depth= 5] . ( 6 sec) [ -12312.4514] [ 1191] [depth= 1] . ( 6 sec) [ -12268.1440] [ 1191] [depth= 1] . ( 6 sec) [ -12248.9445] [ 1191] [depth= 2] . ( 6 sec) [ -12243.5955] [ 1191] [depth= 4] . ( 6 sec) [ -12203.8414] [ 1189] [depth= 8] . ( 6 sec) [ -12062.9002] [ 1189] [depth= 2] . ( 6 sec) [ -11889.8963] [ 1185] [depth= 15] . ( 6 sec) [ -11883.9603] [ 1185] [depth= 1] . ( 7 sec) [ -11776.6333] [ 1183] [depth= 7] . ( 7 sec) [ -11626.8872] [ 1183] [depth= 1] . ( 7 sec) [ -11591.1025] [ 1180] [depth= 2] . ( 7 sec) [ -11499.8268] [ 1171] [depth= 12] . ( 7 sec) [ -11428.5816] [ 1162] [depth= 16] . ( 7 sec) [ -11274.6259] [ 1151] [depth= 14] . ( 7 sec) [ -11274.5947] [ 1148] [depth= 11] . ( 7 sec) [ -11257.1642] [ 1148] [depth= 1] . ( 7 sec) [ -11229.3655] [ 1144] [depth= 9] . ( 7 sec) [ -11118.2550] [ 1145] [depth= 1] . ( 8 sec) [ -11048.3436] [ 1138] [depth= 24] . ( 8 sec) [ -10910.8484] [ 1123] [depth= 20] . ( 8 sec) [ -10857.5266] [ 1114] [depth= 22] . ( 8 sec) [ -10852.1523] [ 1113] [depth= 1] . ( 8 sec) [ -10773.1609] [ 1101] [depth= 14] . ( 8 sec) [ -10743.2834] [ 1101] [depth= 13] . ( 8 sec) [ -10727.9925] [ 1100] [depth= 35] . ( 8 sec) [ -10715.8000] [ 1099] [depth= 11] . ( 8 sec) [ -10593.9117] [ 1094] [depth= 13] . ( 8 sec) [ -10502.6129] [ 1088] [depth= 8] . ( 9 sec) [ -10497.2476] [ 1088] [depth= 2] . ( 9 sec) [ -10497.0582] [ 1088] [depth= 1] . ( 9 sec) [ -10412.8587] [ 1088] [depth= 1] . ( 9 sec) [ -10377.4948] [ 1088] [depth= 1] . ( 9 sec) [ -10352.5424] [ 1088] [depth= 1] . ( 9 sec) [ -10325.1149] [ 1082] [depth= 2] . ( 9 sec) [ -10244.0917] [ 1082] [depth= 15] . ( 9 sec) [ -10242.9942] [ 1082] [depth= 2] . ( 9 sec) [ -10241.0720] [ 1082] [depth= 1] . ( 9 sec) [ -10235.3206] [ 1080] [depth= 10] . ( 9 sec) [ -10231.3329] [ 1080] [depth= 1] . ( 10 sec) [ -10215.0154] [ 1080] [depth= 13] . ( 10 sec) [ -10085.1195] [ 1078] [depth= 20] . ( 10 sec) [ -10036.3112] [ 1074] [depth= 6] . ( 10 sec) [ -9923.1388] [ 1067] [depth= 36] . ( 10 sec) [ -9922.1389] [ 1064] [depth= 1] . ( 10 sec) [ -9880.1066] [ 1056] [depth= 14] . ( 10 sec) [ -9864.4993] [ 1055] [depth= 1] . ( 10 sec) [ -9855.0284] [ 1054] [depth= 4] . ( 10 sec) [ -9850.7542] [ 1053] [depth= 15] . ( 10 sec) [ -9689.9665] [ 1027] [depth= 14] . ( 11 sec) [ -9688.7102] [ 1027] [depth= 1] . ( 11 sec) [ -9666.8139] [ 1023] [depth= 13] . ( 11 sec) [ -9654.0283] [ 1019] [depth= 21] . ( 11 sec) [ -9623.0451] [ 1013] [depth= 8] . ( 11 sec) [ -9591.3696] [ 1009] [depth= 20] . ( 11 sec) [ -9456.9832] [ 1005] [depth= 18] . ( 11 sec) [ -9423.2659] [ 1000] [depth= 22] . ( 11 sec) [ -9413.6603] [ 999] [depth= 2] . ( 11 sec) [ -9408.2160] [ 997] [depth= 16] . ( 12 sec) [ -9389.9982] [ 996] [depth= 6] . ( 12 sec) [ -9374.0522] [ 996] [depth= 2] . ( 12 sec) [ -9362.0625] [ 996] [depth= 12] . ( 12 sec) [ -9308.8636] [ 996] [depth= 3] . ( 12 sec) [ -9254.0137] [ 990] [depth= 9] . ( 12 sec) [ -9228.8152] [ 986] [depth= 17] . ( 12 sec) [ -9203.0035] [ 984] [depth= 17] . ( 12 sec) [ -9134.7422] [ 980] [depth= 20] . ( 12 sec) [ -9092.2888] [ 974] [depth= 34] . ( 12 sec) [ -9078.3164] [ 973] [depth= 25] . ( 13 sec) [ -9001.5945] [ 961] [depth= 5] . ( 13 sec) [ -8987.3076] [ 959] [depth= 19] . ( 13 sec) [ -8976.9759] [ 958] [depth= 13] . ( 13 sec) [ -8976.6898] [ 960] [depth= 1] . ( 13 sec) [ -8861.3877] [ 935] [depth= 10] . ( 13 sec) [ -8853.5399] [ 935] [depth= 1] . ( 13 sec) [ -8849.5874] [ 935] [depth= 15] . ( 13 sec) [ -8845.5945] [ 935] [depth= 3] . ( 13 sec) [ -8834.3829] [ 934] [depth= 17] . ( 13 sec) [ -8834.3723] [ 934] [depth= 2] . ( 14 sec) [ -8830.7205] [ 930] [depth= 2] . ( 14 sec) [ -8824.0507] [ 930] [depth= 1] . ( 14 sec) [ -8798.7302] [ 929] [depth= 4] . ( 14 sec) [ -8798.6571] [ 929] [depth= 1] . ( 14 sec) [ -8767.3119] [ 925] [depth= 18] . ( 14 sec) [ -8764.0872] [ 925] [depth= 1] . ( 14 sec) [ -8566.1644] [ 923] [depth= 22] . ( 14 sec) [ -8517.3030] [ 913] [depth= 23] . ( 14 sec) [ -8133.5609] [ 894] [depth= 22] . ( 14 sec) [ -8077.7637] [ 894] [depth= 39] . ( 14 sec) [ -7796.0933] [ 874] [depth= 13] . ( 15 sec) [ -7794.1341] [ 874] [depth= 1] . ( 15 sec) [ -7770.7472] [ 874] [depth= 2] . ( 15 sec) [ -7752.6148] [ 870] [depth= 22] . ( 15 sec) [ -7608.8714] [ 865] [depth= 6] . ( 15 sec) [ -7595.5000] [ 862] [depth= 26] . ( 15 sec) [ -7594.9529] [ 862] [depth= 18] . ( 15 sec) [ -7592.2691] [ 862] [depth= 1] . ( 15 sec) [ -7546.5201] [ 857] [depth= 2] . ( 15 sec) [ -7546.0698] [ 857] [depth= 10] . ( 16 sec) [ -7451.9207] [ 862] [depth= 23] . ( 16 sec) [ -7368.6032] [ 856] [depth= 14] . ( 16 sec) [ -7317.0746] [ 849] [depth= 19] . ( 16 sec) [ -7292.0292] [ 847] [depth= 5] . ( 16 sec) [ -7291.2528] [ 847] [depth= 1] . ( 16 sec) [ -7284.6586] [ 847] [depth= 29] . ( 16 sec) [ -7253.1466] [ 840] [depth= 24] . ( 16 sec) [ -7232.8929] [ 839] [depth= 4] . ( 17 sec) [ -7228.4834] [ 838] [depth= 21] . ( 17 sec) [ -7173.5669] [ 835] [depth= 17] . ( 17 sec) [ -7084.8545] [ 815] [depth= 20] . ( 17 sec) [ -7065.7367] [ 815] [depth= 1] . ( 17 sec) [ -6996.8542] [ 795] [depth= 7] . ( 17 sec) [ -6990.8970] [ 795] [depth= 1] . ( 17 sec) [ -6974.3041] [ 790] [depth= 3] . ( 17 sec) [ -6946.8372] [ 785] [depth= 29] . ( 17 sec) [ -6932.9543] [ 783] [depth= 14] . ( 17 sec) [ -6901.5083] [ 783] [depth= 1] . ( 18 sec) [ -6900.8928] [ 783] [depth= 1] . ( 18 sec) [ -6845.9680] [ 783] [depth= 7] . ( 18 sec) [ -6773.7492] [ 772] [depth= 4] . ( 18 sec) [ -6772.8127] [ 772] [depth= 1] . ( 18 sec) [ -6770.3111] [ 772] [depth= 7] . ( 18 sec) [ -6769.9462] [ 772] [depth= 1] . ( 18 sec) [ -6760.0581] [ 771] [depth= 3] . ( 18 sec) [ -6733.3694] [ 771] [depth= 1] . ( 18 sec) [ -6732.1207] [ 771] [depth= 1] . ( 18 sec) [ -6715.7402] [ 770] [depth= 20] . ( 18 sec) [ -6701.7590] [ 766] [depth= 1] . ( 19 sec) [ -6700.2013] [ 766] [depth= 1] . ( 19 sec) [ -6699.7823] [ 766] [depth= 1] . ( 19 sec) [ -6695.9365] [ 766] [depth= 14] . ( 19 sec) [ -6680.9225] [ 764] [depth= 14] . ( 19 sec) [ -6663.5646] [ 762] [depth= 16] . ( 19 sec) [ -6644.3376] [ 759] [depth= 27] . ( 19 sec) [ -6597.4643] [ 749] [depth= 27] . ( 19 sec) [ -6594.5653] [ 749] [depth= 3] . ( 19 sec) [ -6582.5923] [ 747] [depth= 7] . ( 19 sec) [ -6582.1237] [ 747] [depth= 1] . ( 20 sec) [ -6565.5786] [ 745] [depth= 15] . ( 20 sec) [ -6561.6574] [ 745] [depth= 9] . ( 20 sec) [ -6558.0327] [ 745] [depth= 2] . ( 20 sec) [ -6551.0106] [ 741] [depth= 1] . ( 20 sec) [ -6543.8301] [ 740] [depth= 17] . ( 20 sec) [ -6485.9363] [ 738] [depth= 13] . ( 20 sec) [ -6466.3662] [ 738] [depth= 2] . ( 20 sec) [ -6409.3334] [ 734] [depth= 12] . ( 20 sec) [ -6360.6097] [ 729] [depth= 4] . ( 20 sec) [ -6327.5491] [ 721] [depth= 14] . ( 21 sec) [ -6317.4251] [ 721] [depth= 4] . ( 21 sec) [ -6269.4575] [ 711] [depth= 15] . ( 21 sec) [ -6268.4465] [ 711] [depth= 14] . ( 21 sec) [ -6267.0227] [ 711] [depth= 3] . ( 21 sec) [ -6261.3238] [ 711] [depth= 17] . ( 21 sec) [ -6260.2001] [ 712] [depth= 1] . ( 21 sec) [ -6257.9212] [ 712] [depth= 2] . ( 21 sec) [ -6240.0390] [ 708] [depth= 21] . ( 21 sec) [ -6237.3393] [ 707] [depth= 21] . ( 22 sec) [ -6237.2330] [ 707] [depth= 2] . ( 22 sec) [ -6228.8130] [ 707] [depth= 1] . ( 22 sec) [ -6209.2398] [ 707] [depth= 9] . ( 22 sec) [ -6208.6138] [ 707] [depth= 1] . ( 22 sec) [ -6204.2656] [ 707] [depth= 9] . ( 22 sec) [ -6203.8501] [ 707] [depth= 1] . ( 22 sec) [ -6202.6602] [ 706] [depth= 9] . ( 22 sec) [ -6202.4326] [ 706] [depth= 1] . ( 22 sec) [ -6199.1439] [ 706] [depth= 16] . ( 22 sec) [ -6191.0553] [ 705] [depth= 1] . ( 23 sec) [ -6164.8325] [ 702] [depth= 13] . ( 23 sec) [ -6131.0560] [ 696] [depth= 7] . ( 23 sec) [ -6130.7597] [ 696] [depth= 1] . ( 23 sec) [ -6101.6161] [ 691] [depth= 17] . ( 23 sec) [ -6081.0968] [ 688] [depth= 17] . ( 23 sec) [ -6077.1689] [ 687] [depth= 2] . ( 23 sec) [ -6075.9420] [ 687] [depth= 11] . ( 23 sec) [ -6074.4188] [ 687] [depth= 31] . ( 23 sec) [ -6065.4551] [ 686] [depth= 1] . ( 23 sec) [ -6051.8914] [ 685] [depth= 10] . ( 24 sec) [ -6014.2285] [ 679] [depth= 14] . ( 24 sec) [ -6009.9402] [ 682] [depth= 1] . ( 24 sec) [ -5984.4930] [ 679] [depth= 26] . ( 24 sec) [ -5984.0040] [ 679] [depth= 5] . ( 24 sec) [ -5981.6831] [ 678] [depth= 3] . ( 24 sec) [ -5961.5068] [ 674] [depth= 5] . ( 24 sec) [ -5960.9642] [ 674] [depth= 8] . ( 25 sec) [ -5942.5469] [ 669] [depth= 14] . ( 25 sec) [ -5887.9652] [ 666] [depth= 17] . ( 25 sec) [ -5879.1427] [ 667] [depth= 2] . ( 25 sec) [ -5879.0221] [ 667] [depth= 14] . ( 25 sec) [ -5819.7266] [ 662] [depth= 15] . ( 26 sec) [ -5818.2092] [ 662] [depth= 1] . ( 26 sec) [ -5818.1876] [ 662] [depth= 2] . ( 26 sec) [ -5811.7223] [ 662] [depth= 13] . ( 26 sec) [ -5803.2741] [ 662] [depth= 1] . ( 26 sec) [ -5803.1762] [ 662] [depth= 1] . ( 26 sec) [ -5803.0898] [ 662] [depth= 2] . ( 26 sec) [ -5784.5625] [ 662] [depth= 15] . ( 26 sec) [ -5784.5476] [ 662] [depth= 1] . ( 26 sec) [ -5777.3740] [ 658] [depth= 8] . ( 26 sec) [ -5777.3203] [ 658] [depth= 3] . ( 27 sec) [ -5757.8114] [ 657] [depth= 4] . ( 27 sec) [ -5706.6828] [ 658] [depth= 1] . ( 27 sec) [ -5599.5406] [ 658] [depth= 13] . ( 27 sec) [ -5596.5650] [ 658] [depth= 3] . ( 27 sec) [ -5524.8788] [ 639] [depth= 18] . ( 27 sec) [ -5513.5240] [ 637] [depth= 8] . ( 27 sec) [ -5512.1452] [ 636] [depth= 5] . ( 27 sec) [ -5511.3807] [ 636] [depth= 9] . ( 27 sec) [ -5497.5461] [ 633] [depth= 15] . ( 27 sec) [ -5492.8516] [ 633] [depth= 1] . ( 28 sec) [ -5491.2280] [ 633] [depth= 1] . ( 28 sec) [ -5462.7883] [ 627] [depth= 18] . ( 28 sec) [ -5432.0941] [ 626] [depth= 25] . ( 28 sec) [ -5397.0283] [ 626] [depth= 21] . ( 28 sec) [ -5396.7298] [ 626] [depth= 4] . ( 28 sec) [ -5340.2021] [ 626] [depth= 3] . ( 28 sec) [ -5328.7603] [ 622] [depth= 15] . ( 28 sec) [ -5328.6665] [ 622] [depth= 2] . ( 28 sec) [ -5328.6034] [ 622] [depth= 1] . ( 28 sec) [ -5301.9095] [ 614] [depth= 4] . ( 29 sec) [ -5301.5388] [ 613] [depth= 10] . ( 29 sec) [ -5279.1914] [ 615] [depth= 13] . ( 29 sec) [ -5260.6886] [ 609] [depth= 8] . ( 29 sec) [ -5246.7933] [ 608] [depth= 10] . ( 29 sec) [ -5226.8874] [ 605] [depth= 2] . ( 29 sec) [ -5209.9433] [ 602] [depth= 1] . ( 30 sec) [ -5190.3629] [ 598] [depth= 15] . ( 30 sec) [ -5190.1171] [ 598] [depth= 1] . ( 30 sec) [ -5190.0477] [ 598] [depth= 13] . ( 30 sec) [ -5189.0960] [ 598] [depth= 18] . ( 30 sec) [ -5176.7263] [ 595] [depth= 2] . ( 30 sec) [ -5176.6802] [ 595] [depth= 3] . ( 30 sec) [ -5157.5596] [ 595] [depth= 23] . ( 30 sec) [ -5152.9410] [ 595] [depth= 1] . ( 30 sec) [ -5139.7908] [ 593] [depth= 12] . ( 31 sec) [ -5138.3812] [ 593] [depth= 1] . ( 31 sec) [ -5131.4461] [ 591] [depth= 12] . ( 31 sec) [ -5117.6411] [ 595] [depth= 1] . ( 31 sec) [ -5113.5159] [ 593] [depth= 2] . ( 31 sec) [ -5104.1786] [ 593] [depth= 2] . ( 31 sec) [ -5095.6768] [ 592] [depth= 2] . ( 31 sec) [ -5089.3589] [ 591] [depth= 2] . ( 31 sec) [ -5088.7712] [ 589] [depth= 13] . ( 32 sec) [ -5016.0543] [ 570] [depth= 13] . ( 32 sec) [ -5015.7131] [ 570] [depth= 3] . ( 32 sec) [ -5012.1738] [ 570] [depth= 3] . ( 32 sec) [ -5011.2428] [ 570] [depth= 8] . ( 32 sec) [ -4994.0853] [ 567] [depth= 9] . ( 32 sec) [ -4993.6966] [ 567] [depth= 5] . ( 32 sec) [ -4993.1799] [ 567] [depth= 3] . ( 32 sec) [ -4992.5806] [ 567] [depth= 1] . ( 32 sec) [ -4990.9110] [ 567] [depth= 1] . ( 33 sec) [ -4971.5072] [ 567] [depth= 8] . ( 33 sec) [ -4970.5426] [ 567] [depth= 5] . ( 33 sec) [ -4951.2461] [ 564] [depth= 15] . ( 33 sec) [ -4948.9074] [ 564] [depth= 4] . ( 33 sec) [ -4931.3503] [ 562] [depth= 5] . ( 33 sec) [ -4906.1509] [ 559] [depth= 12] . ( 33 sec) [ -4889.2197] [ 558] [depth= 13] . ( 34 sec) [ -4881.3795] [ 558] [depth= 11] . ( 34 sec) [ -4881.1431] [ 558] [depth= 9] . ( 34 sec) [ -4872.3539] [ 558] [depth= 5] . ( 34 sec) [ -4870.9918] [ 559] [depth= 10] . ( 34 sec) [ -4869.5929] [ 559] [depth= 8] . ( 35 sec) [ -4838.6547] [ 553] [depth= 6] . ( 35 sec) [ -4831.7984] [ 553] [depth= 1] . ( 35 sec) [ -4827.9830] [ 554] [depth= 1] . ( 35 sec) [ -4752.2320] [ 559] [depth= 8] . ( 36 sec) [ -4749.5692] [ 559] [depth= 1] . ( 36 sec) [ -4747.2768] [ 557] [depth= 18] . ( 36 sec) [ -4739.6952] [ 555] [depth= 19] . ( 36 sec) [ -4733.0283] [ 555] [depth= 2] . ( 36 sec) [ -4732.9729] [ 555] [depth= 1] . ( 36 sec) [ -4711.2818] [ 551] [depth= 2] . ( 36 sec) [ -4707.6228] [ 551] [depth= 5] . ( 36 sec) [ -4701.6818] [ 552] [depth= 1] . ( 36 sec) [ -4671.1736] [ 546] [depth= 25] . ( 36 sec) [ -4652.7258] [ 543] [depth= 7] . ( 36 sec) [ -4652.3047] [ 543] [depth= 1] . ( 37 sec) [ -4639.7106] [ 540] [depth= 8] . ( 37 sec) [ -4634.1196] [ 540] [depth= 1] . ( 37 sec) [ -4626.8943] [ 540] [depth= 13] . ( 37 sec) [ -4626.6634] [ 540] [depth= 1] . ( 37 sec) [ -4626.1403] [ 540] [depth= 12] . ( 37 sec) [ -4611.7021] [ 540] [depth= 1] . ( 37 sec) [ -4610.0427] [ 539] [depth= 10] . ( 37 sec) [ -4587.4038] [ 536] [depth= 6] . ( 37 sec) [ -4569.2534] [ 536] [depth= 4] . ( 37 sec) [ -4567.5827] [ 536] [depth= 10] . ( 38 sec) [ -4567.5512] [ 536] [depth= 2] . ( 38 sec) [ -4512.6261] [ 521] [depth= 8] . ( 38 sec) [ -4511.1131] [ 521] [depth= 10] . ( 38 sec) [ -4505.6805] [ 521] [depth= 1] . ( 38 sec) [ -4505.6666] [ 521] [depth= 13] . ( 38 sec) [ -4504.4786] [ 521] [depth= 1] . ( 38 sec) [ -4503.8850] [ 521] [depth= 15] . ( 39 sec) [ -4503.0043] [ 520] [depth= 18] . ( 39 sec) [ -4502.9127] [ 520] [depth= 14] . ( 39 sec) [ -4502.8428] [ 520] [depth= 1] . ( 39 sec) [ -4502.7229] [ 520] [depth= 8] . ( 39 sec) [ -4500.0995] [ 520] [depth= 6] . ( 39 sec) [ -4492.9722] [ 519] [depth= 10] . ( 39 sec) [ -4488.7928] [ 519] [depth= 1] . ( 40 sec) [ -4483.9997] [ 520] [depth= 2] . ( 40 sec) [ -4481.9994] [ 520] [depth= 7] . ( 40 sec) [ -4447.8324] [ 512] [depth= 7] . ( 40 sec) [ -4447.6429] [ 515] [depth= 1] . ( 40 sec) [ -4418.6191] [ 512] [depth= 18] . ( 40 sec) [ -4408.1723] [ 510] [depth= 16] . ( 40 sec) [ -4396.3438] [ 507] [depth= 16] . ( 40 sec) [ -4369.2622] [ 503] [depth= 13] . ( 40 sec) [ -4368.9939] [ 503] [depth= 14] . ( 40 sec) [ -4355.3460] [ 502] [depth= 8] . ( 41 sec) [ -4354.3856] [ 502] [depth= 2] . ( 41 sec) [ -4353.7734] [ 502] [depth= 2] . ( 41 sec) [ -4352.4123] [ 502] [depth= 3] . ( 41 sec) [ -4351.6618] [ 502] [depth= 4] . ( 41 sec) [ -4309.1899] [ 495] [depth= 1] . ( 41 sec) [ -4250.2062] [ 484] [depth= 14] . ( 41 sec) [ -4234.4042] [ 484] [depth= 1] . ( 42 sec) [ -4233.9502] [ 483] [depth= 2] . ( 42 sec) [ -4232.2654] [ 483] [depth= 1] . ( 42 sec) [ -4225.1670] [ 483] [depth= 3] . ( 42 sec) [ -4218.7484] [ 482] [depth= 7] . ( 42 sec) [ -4209.9766] [ 481] [depth= 5] . ( 45 sec) [ -4209.9334] [ 481] [depth= 2] . ( 45 sec) [ -4206.7722] [ 481] [depth= 4] . ( 45 sec) [ -4203.8922] [ 480] [depth= 9] . ( 45 sec) [ -4201.8033] [ 480] [depth= 1] . ( 45 sec) [ -4200.6459] [ 480] [depth= 1] . ( 45 sec) [ -4200.4062] [ 480] [depth= 1] . ( 45 sec) [ -4198.0061] [ 479] [depth= 1] . ( 45 sec) [ -4194.7625] [ 478] [depth= 5] . ( 46 sec) [ -4193.9256] [ 478] [depth= 4] . ( 46 sec) [ -4193.2538] [ 477] [depth= 3] . ( 47 sec) [ -4185.7996] [ 475] [depth= 2] . ( 47 sec) [ -4174.7011] [ 474] [depth= 27] . ( 48 sec) [ -4174.5626] [ 474] [depth= 3] . ( 49 sec) [ -4173.9609] [ 474] [depth= 4] . ( 49 sec) [ -4173.8719] [ 474] [depth= 1] . ( 49 sec) [ -4138.2248] [ 466] [depth= 21] . ( 49 sec) [ -4137.4953] [ 466] [depth= 1] . ( 49 sec) [ -4130.3054] [ 465] [depth= 2] . ( 50 sec) [ -4068.2026] [Branch lengths ] . ( 52 sec) [ -4054.7464] [GTR parameters ] . ( 52 sec) [ -4012.8034] [Alpha ][ 0.250961] . ( 52 sec) [ -4004.4557] [ 457] [depth= 9] . ( 53 sec) [ -4004.0949] [ 456] [depth= 18] . ( 53 sec) [ -3994.8441] [ 454] [depth= 9] . ( 53 sec) [ -3988.0473] [ 453] [depth= 2] . ( 53 sec) [ -3956.9514] [ 446] [depth= 16] . ( 55 sec) [ -3952.2908] [ 445] [depth= 3] . ( 55 sec) [ -3952.1484] [ 445] [depth= 3] . ( 57 sec) [ -3952.1284] [ 445] [depth= 5] . ( 57 sec) [ -3952.1037] [ 445] [depth= 3] . ( 57 sec) [ -3952.0917] [ 445] [depth= 5] . ( 57 sec) [ -3950.7097] [ 445] [depth= 4] . ( 57 sec) [ -3950.6989] [ 445] [depth= 1] . ( 57 sec) [ -3942.0651] [ 443] [depth= 3] . ( 57 sec) [ -3938.8877] [ 440] [depth= 11] . ( 57 sec) [ -3937.8610] [ 440] [depth= 16] . ( 58 sec) [ -3937.4485] [ 440] [depth= 1] . ( 58 sec) [ -3937.4248] [ 440] [depth= 3] . ( 59 sec) [ -3937.1953] [ 440] [depth= 1] . ( 59 sec) [ -3937.0794] [ 440] [depth= 2] . ( 63 sec) [ -3934.1510] [ 438] [depth= 5] . ( 64 sec) [ -3924.0888] [ 436] [depth= 3] . ( 64 sec) [ -3923.9246] [ 436] [depth= 2] . ( 64 sec) [ -3922.8302] [ 436] [depth= 3] . ( 64 sec) [ -3919.5450] [ 435] [depth= 1] . ( 64 sec) [ -3919.2652] [ 435] [depth= 1] . ( 64 sec) [ -3919.1184] [ 435] [depth= 7] . ( 64 sec) [ -3902.1669] [ 432] [depth= 21] . ( 64 sec) [ -3901.9552] [ 432] [depth= 2] . ( 65 sec) [ -3901.6490] [ 432] [depth= 14] . ( 65 sec) [ -3901.6037] [ 432] [depth= 2] . ( 65 sec) [ -3893.9423] [ 432] [depth= 16] . ( 65 sec) [ -3867.0684] [ 429] [depth= 22] . ( 67 sec) [ -3867.0394] [ 430] [depth= 5] . ( 68 sec) [ -3864.1652] [ 429] [depth= 6] . ( 68 sec) [ -3851.4273] [ 427] [depth= 3] . ( 68 sec) [ -3850.4706] [ 427] [depth= 3] . ( 68 sec) [ -3848.5608] [ 426] [depth= 19] . ( 68 sec) [ -3844.6814] [ 425] [depth= 1] . ( 68 sec) [ -3844.6604] [ 425] [depth= 1] . ( 70 sec) [ -3838.6249] [ 424] [depth= 15] . ( 71 sec) [ -3838.4985] [ 424] [depth= 1] . ( 72 sec) [ -3838.3821] [ 424] [depth= 1] . ( 72 sec) [ -3827.6229] [ 418] [depth= 12] . ( 72 sec) [ -3827.6106] [ 418] [depth= 8] . ( 73 sec) [ -3827.5860] [ 418] [depth= 3] . ( 74 sec) [ -3820.8706] [ 411] [depth= 15] . ( 75 sec) [ -3820.6191] [ 409] [depth= 1] . ( 75 sec) [ -3817.2812] [ 408] [depth= 4] . ( 76 sec) [ -3817.1431] [ 408] [depth= 4] . ( 77 sec) [ -3807.8812] [ 408] [depth= 2] . ( 77 sec) [ -3800.5910] [ 407] [depth= 12] . ( 77 sec) [ -3798.8512] [ 407] [depth= 9] . ( 78 sec) [ -3798.7814] [ 407] [depth= 2] . ( 79 sec) [ -3798.7382] [ 407] [depth= 4] . ( 79 sec) [ -3798.5098] [ 407] [depth= 3] . ( 80 sec) [ -3786.4364] [ 403] [depth= 10] . ( 80 sec) [ -3768.6889] [ 398] [depth= 21] . ( 80 sec) [ -3766.8966] [ 398] [depth= 1] . ( 80 sec) [ -3743.2248] [ 391] [depth= 13] . ( 80 sec) [ -3739.7548] [ 392] [depth= 1] . ( 80 sec) [ -3708.4959] [ 386] [depth= 12] . ( 80 sec) [ -3689.1230] [ 383] [depth= 27] . ( 81 sec) [ -3678.4488] [ 383] [depth= 2] . ( 81 sec) [ -3678.3722] [ 383] [depth= 4] . ( 81 sec) [ -3678.1634] [ 383] [depth= 3] . ( 82 sec) [ -3678.1263] [ 383] [depth= 2] . ( 82 sec) [ -3678.0389] [ 383] [depth= 1] . ( 83 sec) [ -3677.8209] [ 383] [depth= 1] . ( 83 sec) [ -3677.7764] [ 384] [depth= 1] . ( 83 sec) [ -3677.6954] [ 384] [depth= 2] . ( 83 sec) [ -3677.0225] [ 383] [depth= 21] . ( 84 sec) [ -3676.9051] [ 383] [depth= 7] . ( 87 sec) [ -3676.2039] [ 382] [depth= 1] . ( 87 sec) [ -3676.1122] [ 382] [depth= 1] . ( 87 sec) [ -3665.4337] [ 379] [depth= 15] . ( 88 sec) [ -3662.6945] [ 379] [depth= 2] . ( 88 sec) [ -3662.6333] [ 379] [depth= 1] . ( 89 sec) [ -3662.5912] [ 379] [depth= 4] . ( 89 sec) [ -3662.5772] [ 379] [depth= 4] . ( 89 sec) [ -3662.5657] [ 379] [depth= 3] . ( 91 sec) [ -3662.5517] [ 379] [depth= 6] . ( 91 sec) [ -3662.3377] [ 379] [depth= 1] . ( 93 sec) [ -3662.2137] [ 379] [depth= 1] . ( 93 sec) [ -3662.2023] [ 379] [depth= 2] . ( 93 sec) [ -3661.4161] [ 379] [depth= 1] . ( 93 sec) [ -3661.2716] [ 379] [depth= 2] . ( 93 sec) [ -3655.0093] [ 377] [depth= 3] . ( 94 sec) [ -3654.6243] [ 377] [depth= 6] . ( 94 sec) [ -3649.6735] [ 376] [depth= 1] . ( 94 sec) [ -3638.8530] [ 376] [depth= 2] . ( 95 sec) [ -3638.6009] [ 376] [depth= 2] . ( 95 sec) [ -3638.5838] [ 376] [depth= 3] . ( 96 sec) [ -3637.9328] [ 376] [depth= 1] . ( 96 sec) [ -3636.6554] [ 376] [depth= 6] . ( 96 sec) [ -3636.6375] [ 376] [depth= 7] . ( 96 sec) [ -3635.6327] [ 376] [depth= 2] . ( 96 sec) [ -3634.8405] [ 376] [depth= 1] . ( 97 sec) [ -3634.8176] [ 376] [depth= 5] . ( 97 sec) [ -3634.3559] [ 376] [depth= 3] . ( 97 sec) [ -3634.2638] [ 376] [depth= 1] . ( 97 sec) [ -3634.2371] [ 376] [depth= 1] . ( 99 sec) [ -3634.1498] [ 376] [depth= 4] . ( 100 sec) [ -3625.3158] [ 374] [depth= 5] . ( 100 sec) [ -3625.0284] [ 374] [depth= 3] . ( 101 sec) [ -3624.9515] [ 374] [depth= 11] . ( 101 sec) [ -3624.8391] [ 374] [depth= 2] . ( 101 sec) [ -3623.1396] [ 374] [depth= 1] . ( 103 sec) [ -3623.0430] [ 374] [depth= 2] . ( 103 sec) [ -3620.5030] [ 373] [depth= 3] . ( 103 sec) [ -3614.0417] [ 372] [depth= 1] . ( 104 sec) [ -3613.4063] [ 371] [depth= 2] . ( 104 sec) [ -3613.3924] [ 371] [depth= 4] . ( 104 sec) [ -3610.3930] [ 369] [depth= 1] . ( 104 sec) [ -3610.3112] [ 369] [depth= 1] . ( 105 sec) [ -3610.2397] [ 369] [depth= 7] . ( 105 sec) [ -3609.9049] [ 369] [depth= 2] . ( 105 sec) [ -3609.6993] [ 369] [depth= 1] . ( 105 sec) [ -3609.6860] [ 369] [depth= 2] . ( 105 sec) [ -3609.1321] [ 369] [depth= 12] . ( 105 sec) [ -3609.0069] [ 369] [depth= 7] . ( 105 sec) [ -3607.9807] [ 369] [depth= 2] . ( 105 sec) [ -3607.9534] [ 369] [depth= 4] . ( 106 sec) [ -3603.9446] [ 368] [depth= 8] . ( 106 sec) [ -3603.8802] [ 368] [depth= 1] . ( 106 sec) [ -3603.8700] [ 368] [depth= 3] . ( 107 sec) [ -3603.7363] [ 368] [depth= 7] . ( 108 sec) [ -3603.6827] [ 368] [depth= 7] . ( 109 sec) [ -3603.6409] [ 368] [depth= 6] . ( 109 sec) [ -3592.2891] [ 365] [depth= 8] . ( 110 sec) [ -3580.4783] [ 363] [depth= 11] . ( 110 sec) [ -3580.4399] [ 363] [depth= 1] . ( 110 sec) [ -3567.2120] [ 359] [depth= 5] . ( 110 sec) [ -3567.1649] [ 359] [depth= 1] . ( 111 sec) [ -3567.1142] [ 359] [depth= 2] . ( 111 sec) [ -3567.0156] [ 359] [depth= 8] . ( 111 sec) [ -3563.6961] [ 358] [depth= 2] . ( 112 sec) [ -3559.3307] [ 357] [depth= 4] . ( 112 sec) [ -3556.4400] [ 356] [depth= 1] . ( 112 sec) [ -3556.3295] [ 356] [depth= 1] . ( 113 sec) [ -3556.2541] [ 356] [depth= 1] . ( 113 sec) [ -3553.2198] [ 356] [depth= 1] . ( 113 sec) [ -3553.1919] [ 356] [depth= 5] . ( 113 sec) [ -3553.1479] [ 356] [depth= 3] . ( 115 sec) [ -3553.0720] [ 356] [depth= 2] . ( 115 sec) [ -3552.9209] [ 356] [depth= 1] . ( 115 sec) [ -3552.7315] [ 356] [depth= 1] . ( 115 sec) [ -3552.7140] [ 356] [depth= 1] . ( 115 sec) [ -3552.6811] [ 356] [depth= 2] . ( 115 sec) [ -3552.6624] [ 356] [depth= 3] . ( 116 sec) [ -3552.6411] [ 356] [depth= 4] . ( 118 sec) [ -3552.6128] [ 356] [depth= 2] . ( 119 sec) [ -3552.5174] [ 356] [depth= 5] . ( 121 sec) [ -3539.0588] [ 354] [depth= 8] . ( 121 sec) [ -3539.0402] [ 354] [depth= 5] . ( 122 sec) [ -3539.0236] [ 354] [depth= 2] . ( 122 sec) [ -3539.0128] [ 354] [depth= 2] . ( 123 sec) [ -3529.8321] [ 352] [depth= 11] . ( 125 sec) [ -3529.5247] [ 352] [depth= 1] . ( 128 sec) [ -3529.5037] [ 352] [depth= 3] . ( 128 sec) [ -3529.4934] [ 352] [depth= 3] . ( 129 sec) [ -3529.4810] [ 352] [depth= 4] . ( 129 sec) [ -3529.4292] [ 352] [depth= 1] . ( 143 sec) [ -3529.4126] [ 352] [depth= 1] . ( 146 sec) [ -3517.9018] [ 350] [depth= 16] . ( 147 sec) [ -3517.6491] [ 350] [depth= 1] . ( 150 sec) [ -3517.6362] [ 350] [depth= 1] . ( 150 sec) [ -3517.6206] [ 350] [depth= 1] . ( 151 sec) [ -3517.5898] [ 350] [depth= 1] . ( 152 sec) [ -3517.2516] [ 350] [depth= 2] . ( 152 sec) [ -3517.1796] [ 350] [depth= 1] . ( 153 sec) [ -3510.2296] [ 349] [depth= 15] . ( 154 sec) [ -3508.7581] [ 349] [depth= 15] . ( 156 sec) [ -3508.7444] [ 349] [depth= 1] . ( 159 sec) [ -3501.7386] [Branch lengths ] . ( 160 sec) [ -3499.2238] [GTR parameters ] . ( 160 sec) [ -3499.1530] [Alpha ][ 0.262890] . ( 168 sec) [ -3499.0354] [ 348] [depth= 6] . ( 172 sec) [ -3495.0370] [ 347] [depth= 15] . ( 177 sec) [ -3494.8353] [ 347] [depth= 6] . ( 178 sec) [ -3494.7825] [ 347] [depth= 1] . ( 180 sec) [ -3488.0845] [ 346] [depth= 5] . ( 181 sec) [ -3487.8470] [ 346] [depth= 1] . ( 184 sec) [ -3487.7021] [ 346] [depth= 1] . ( 186 sec) [ -3481.6525] [ 345] [depth= 2] . ( 187 sec) [ -3481.6306] [ 345] [depth= 8] . ( 191 sec) [ -3481.6055] [ 345] [depth= 1] . ( 192 sec) [ -3481.4144] [ 345] [depth= 1] . ( 192 sec) [ -3481.2451] [ 345] [depth= 2] . ( 195 sec) [ -3481.2345] [ 345] [depth= 3] . ( 198 sec) [ -3479.5352] [ 345] [depth= 3] . ( 206 sec) [ -3479.4563] [ 345] [depth= 1] . ( 212 sec) [ -3476.8134] [ 345] [depth= 4] . ( 220 sec) [ -3476.7458] [ 345] [depth= 1] . ( 234 sec) [ -3476.5312] [ 345] [depth= 6] . ( 238 sec) [ -3476.5192] [ 345] [depth= 2] . ( 241 sec) [ -3476.3330] [ 345] [depth= 1] . ( 241 sec) [ -3476.2671] [ 345] [depth= 6] . ( 244 sec) [ -3476.0905] [ 345] [depth= 2] . ( 253 sec) [ -3476.0781] [ 345] [depth= 13] . ( 253 sec) [ -3476.0525] [ 345] [depth= 3] . ( 254 sec) [ -3475.9868] [ 345] [depth= 1] . ( 258 sec) [ -3475.8305] [ 345] [depth= 4] . ( 259 sec) [ -3474.9430] [ 344] [depth= 1] . ( 260 sec) [ -3474.1987] [ 344] [depth= 1] . ( 265 sec) [ -3474.1862] [ 344] [depth= 1] . ( 266 sec) [ -3474.1750] [ 344] [depth= 1] . ( 273 sec) [ -3474.1632] [ 344] [depth= 5] . ( 279 sec) [ -3474.1426] [ 344] [depth= 4] . ( 281 sec) [ -3470.9045] [ 343] [depth= 4] . ( 281 sec) [ -3470.1927] [ 343] [depth= 1] . ( 281 sec) [ -3470.1589] [ 343] [depth= 1] . ( 282 sec) [ -3470.1488] [ 343] [depth= 4] . ( 298 sec) [ -3470.0633] [ 343] [depth= 2] . ( 333 sec) [ -3470.0283] [ 343] [depth= 1] . ( 342 sec) [ -3467.6387] [Branch lengths ] . ( 344 sec) [ -3467.3003] [GTR parameters ] . ( 344 sec) [ -3467.2613] [Alpha ][ 0.272689] . ( 440 sec) [ -3467.2245] [ 343] [depth= 2] . ( 460 sec) [ -3467.1624] [ 343] [depth= 1] . ( 548 sec) [ -3465.9340] [Branch lengths ] . ( 549 sec) [ -3465.9287] [GTR parameters ] . ( 549 sec) [ -3465.9282] [Alpha ][ 0.273807] . ( 638 sec) [ -3465.9068] [ 343] [depth= 3] . ( 643 sec) [ -3465.8486] [ 343] [depth= 1] . ( 752 sec) [ -3465.3453] [Branch lengths ] . ( 753 sec) [ -3465.3451] [GTR parameters ] . ( 753 sec) [ -3465.3450] [Alpha ][ 0.274080] . ( 761 sec) [ -3465.2979] [ 342] [depth= 10] . ( 848 sec) [ -3465.1597] [Branch lengths ] . ( 849 sec) [ -3465.1419] [GTR parameters ] . ( 849 sec) [ -3465.1414] [Alpha ][ 0.275294] . ( 849 sec) [ -3465.1414] [Topology ] . ( 851 sec) [ -3465.1372] [Topology ] . ( 853 sec) [ -3465.1366] [Topology ] . ( 854 sec) [ -3465.1365] [GTR parameters ] . ( 854 sec) [ -3465.1365] [Alpha ][ 0.275294] . ( 854 sec) [ -3465.1365] [Topology ] . ( 855 sec) [ -3465.1363] [Topology ] . ( 856 sec) [ -3465.1363] [GTR parameters ] . ( 856 sec) [ -3465.1363] [Alpha ][ 0.275294] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -3465.136334. . [Random start 2/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 3 sec) [ -12894.5756] [GTR parameters ] . ( 3 sec) [ -12651.6062] [Alpha ][ 0.500960] . ( 3 sec) [ -12538.5175] [ 1234] [depth= 4] . ( 3 sec) [ -12462.2912] [ 1224] [depth= 3] . ( 3 sec) [ -12447.5673] [ 1224] [depth= 2] . ( 4 sec) [ -12381.8302] [ 1223] [depth= 4] . ( 4 sec) [ -12367.9690] [ 1221] [depth= 1] . ( 4 sec) [ -12282.4685] [ 1221] [depth= 9] . ( 4 sec) [ -12278.7742] [ 1221] [depth= 3] . ( 4 sec) [ -12231.3605] [ 1221] [depth= 2] . ( 4 sec) [ -12214.6638] [ 1221] [depth= 2] . ( 4 sec) [ -12157.6528] [ 1221] [depth= 1] . ( 4 sec) [ -12056.1133] [ 1220] [depth= 6] . ( 4 sec) [ -12045.4570] [ 1220] [depth= 1] . ( 4 sec) [ -12044.7147] [ 1220] [depth= 8] . ( 4 sec) [ -11994.6743] [ 1220] [depth= 2] . ( 5 sec) [ -11981.0984] [ 1219] [depth= 8] . ( 5 sec) [ -11847.6864] [ 1219] [depth= 5] . ( 5 sec) [ -11681.6405] [ 1215] [depth= 6] . ( 5 sec) [ -11597.5104] [ 1215] [depth= 6] . ( 5 sec) [ -11586.2475] [ 1215] [depth= 4] . ( 5 sec) [ -11569.1017] [ 1215] [depth= 1] . ( 5 sec) [ -11546.3010] [ 1214] [depth= 5] . ( 5 sec) [ -11531.6190] [ 1214] [depth= 1] . ( 5 sec) [ -11493.1401] [ 1209] [depth= 29] . ( 5 sec) [ -11421.8701] [ 1194] [depth= 24] . ( 5 sec) [ -11397.4439] [ 1190] [depth= 22] . ( 6 sec) [ -11379.1016] [ 1190] [depth= 29] . ( 6 sec) [ -11297.1847] [ 1170] [depth= 33] . ( 6 sec) [ -11255.1769] [ 1170] [depth= 1] . ( 6 sec) [ -11235.1334] [ 1170] [depth= 3] . ( 6 sec) [ -11199.8389] [ 1163] [depth= 7] . ( 6 sec) [ -11195.1821] [ 1163] [depth= 17] . ( 6 sec) [ -11181.0725] [ 1162] [depth= 17] . ( 6 sec) [ -11127.3802] [ 1161] [depth= 10] . ( 6 sec) [ -11083.0889] [ 1162] [depth= 2] . ( 6 sec) [ -11082.0410] [ 1161] [depth= 7] . ( 7 sec) [ -11041.5737] [ 1156] [depth= 19] . ( 7 sec) [ -10997.8425] [ 1150] [depth= 7] . ( 7 sec) [ -10966.7057] [ 1148] [depth= 13] . ( 7 sec) [ -10913.9970] [ 1142] [depth= 12] . ( 7 sec) [ -10822.7473] [ 1134] [depth= 27] . ( 7 sec) [ -10800.8940] [ 1124] [depth= 14] . ( 7 sec) [ -10527.3753] [ 1117] [depth= 3] . ( 7 sec) [ -10489.2788] [ 1115] [depth= 11] . ( 7 sec) [ -10478.7429] [ 1115] [depth= 2] . ( 7 sec) [ -10441.8942] [ 1115] [depth= 19] . ( 8 sec) [ -10395.8230] [ 1108] [depth= 22] . ( 8 sec) [ -10383.6450] [ 1109] [depth= 1] . ( 8 sec) [ -10347.9744] [ 1108] [depth= 15] . ( 8 sec) [ -10303.7432] [ 1102] [depth= 20] . ( 8 sec) [ -10280.4728] [ 1101] [depth= 2] . ( 8 sec) [ -10270.0409] [ 1101] [depth= 1] . ( 8 sec) [ -10262.5135] [ 1101] [depth= 11] . ( 8 sec) [ -10240.7542] [ 1101] [depth= 1] . ( 8 sec) [ -10194.0735] [ 1092] [depth= 13] . ( 8 sec) [ -10170.0533] [ 1090] [depth= 14] . ( 9 sec) [ -10158.8075] [ 1090] [depth= 7] . ( 9 sec) [ -10154.1461] [ 1090] [depth= 9] . ( 9 sec) [ -10085.0587] [ 1085] [depth= 9] . ( 9 sec) [ -10028.7908] [ 1080] [depth= 18] . ( 9 sec) [ -10012.9714] [ 1076] [depth= 1] . ( 9 sec) [ -9975.3865] [ 1073] [depth= 7] . ( 9 sec) [ -9910.3272] [ 1068] [depth= 15] . ( 9 sec) [ -9868.6560] [ 1063] [depth= 30] . ( 9 sec) [ -9852.6362] [ 1063] [depth= 2] . ( 9 sec) [ -9848.9652] [ 1062] [depth= 3] . ( 9 sec) [ -9842.4632] [ 1061] [depth= 11] . ( 10 sec) [ -9839.8767] [ 1061] [depth= 21] . ( 10 sec) [ -9814.5152] [ 1056] [depth= 3] . ( 10 sec) [ -9808.7670] [ 1056] [depth= 12] . ( 10 sec) [ -9725.2667] [ 1034] [depth= 20] . ( 10 sec) [ -9723.4979] [ 1034] [depth= 12] . ( 10 sec) [ -9720.9605] [ 1034] [depth= 9] . ( 10 sec) [ -9576.0853] [ 1023] [depth= 11] . ( 11 sec) [ -9451.0501] [ 1002] [depth= 21] . ( 11 sec) [ -9304.9783] [ 996] [depth= 14] . ( 11 sec) [ -9297.8066] [ 994] [depth= 6] . ( 11 sec) [ -9258.4254] [ 989] [depth= 14] . ( 11 sec) [ -9231.9418] [ 985] [depth= 7] . ( 11 sec) [ -9220.1124] [ 983] [depth= 1] . ( 11 sec) [ -9194.0353] [ 977] [depth= 10] . ( 11 sec) [ -9192.4276] [ 977] [depth= 11] . ( 11 sec) [ -9186.9963] [ 977] [depth= 4] . ( 11 sec) [ -8939.9154] [ 977] [depth= 1] . ( 11 sec) [ -8917.3760] [ 977] [depth= 1] . ( 12 sec) [ -8904.1198] [ 977] [depth= 21] . ( 12 sec) [ -8893.4850] [ 977] [depth= 2] . ( 12 sec) [ -8891.2524] [ 976] [depth= 2] . ( 12 sec) [ -8891.1436] [ 976] [depth= 5] . ( 12 sec) [ -8823.0477] [ 971] [depth= 12] . ( 12 sec) [ -8822.3485] [ 971] [depth= 1] . ( 12 sec) [ -8669.5302] [ 968] [depth= 14] . ( 12 sec) [ -8656.2119] [ 970] [depth= 2] . ( 12 sec) [ -8615.2496] [ 962] [depth= 33] . ( 12 sec) [ -8599.6761] [ 962] [depth= 30] . ( 12 sec) [ -8550.1461] [ 950] [depth= 12] . ( 13 sec) [ -8537.3722] [ 948] [depth= 2] . ( 13 sec) [ -8420.7279] [ 943] [depth= 12] . ( 13 sec) [ -8339.5072] [ 943] [depth= 6] . ( 13 sec) [ -8305.5603] [ 936] [depth= 9] . ( 13 sec) [ -8243.8465] [ 935] [depth= 6] . ( 13 sec) [ -8153.1788] [ 934] [depth= 18] . ( 13 sec) [ -8136.9608] [ 931] [depth= 10] . ( 13 sec) [ -8085.2270] [ 929] [depth= 26] . ( 13 sec) [ -8015.9838] [ 911] [depth= 18] . ( 13 sec) [ -7996.5788] [ 911] [depth= 10] . ( 14 sec) [ -7983.5305] [ 901] [depth= 18] . ( 14 sec) [ -7953.2781] [ 900] [depth= 9] . ( 14 sec) [ -7906.6655] [ 894] [depth= 24] . ( 14 sec) [ -7904.8088] [ 894] [depth= 20] . ( 14 sec) [ -7904.1457] [ 894] [depth= 12] . ( 14 sec) [ -7891.9749] [ 894] [depth= 20] . ( 14 sec) [ -7869.2361] [ 889] [depth= 19] . ( 14 sec) [ -7866.6551] [ 891] [depth= 1] . ( 14 sec) [ -7860.9105] [ 889] [depth= 4] . ( 14 sec) [ -7810.3594] [ 888] [depth= 9] . ( 15 sec) [ -7794.1389] [ 885] [depth= 29] . ( 15 sec) [ -7768.9496] [ 881] [depth= 21] . ( 15 sec) [ -7767.2750] [ 881] [depth= 3] . ( 15 sec) [ -7740.1995] [ 880] [depth= 16] . ( 15 sec) [ -7727.6199] [ 880] [depth= 2] . ( 15 sec) [ -7725.2264] [ 880] [depth= 6] . ( 15 sec) [ -7714.6524] [ 873] [depth= 8] . ( 15 sec) [ -7640.9902] [ 873] [depth= 1] . ( 15 sec) [ -7633.3333] [ 873] [depth= 2] . ( 16 sec) [ -7627.0837] [ 872] [depth= 25] . ( 16 sec) [ -7583.2057] [ 872] [depth= 10] . ( 16 sec) [ -7527.9983] [ 868] [depth= 11] . ( 16 sec) [ -7502.7820] [ 864] [depth= 20] . ( 16 sec) [ -7474.2082] [ 859] [depth= 9] . ( 17 sec) [ -7473.2769] [ 859] [depth= 1] . ( 17 sec) [ -7420.6753] [ 852] [depth= 22] . ( 17 sec) [ -7394.8376] [ 852] [depth= 4] . ( 17 sec) [ -7346.7454] [ 852] [depth= 1] . ( 17 sec) [ -7262.9349] [ 846] [depth= 14] . ( 17 sec) [ -7114.3842] [ 836] [depth= 6] . ( 17 sec) [ -7095.1349] [ 836] [depth= 21] . ( 17 sec) [ -7058.0572] [ 833] [depth= 12] . ( 17 sec) [ -7041.1474] [ 830] [depth= 2] . ( 17 sec) [ -7041.0764] [ 830] [depth= 1] . ( 18 sec) [ -7036.3177] [ 830] [depth= 24] . ( 18 sec) [ -6973.2867] [ 819] [depth= 6] . ( 18 sec) [ -6936.3917] [ 813] [depth= 13] . ( 18 sec) [ -6935.8367] [ 813] [depth= 2] . ( 18 sec) [ -6933.6494] [ 813] [depth= 2] . ( 18 sec) [ -6925.0512] [ 813] [depth= 8] . ( 18 sec) [ -6902.2737] [ 810] [depth= 2] . ( 18 sec) [ -6877.0410] [ 802] [depth= 2] . ( 18 sec) [ -6814.6348] [ 802] [depth= 1] . ( 19 sec) [ -6814.3719] [ 802] [depth= 1] . ( 19 sec) [ -6814.2335] [ 802] [depth= 3] . ( 19 sec) [ -6794.5080] [ 799] [depth= 9] . ( 19 sec) [ -6794.3411] [ 799] [depth= 2] . ( 19 sec) [ -6758.1421] [ 795] [depth= 5] . ( 19 sec) [ -6743.6432] [ 792] [depth= 1] . ( 19 sec) [ -6742.7678] [ 792] [depth= 1] . ( 19 sec) [ -6741.1334] [ 792] [depth= 2] . ( 19 sec) [ -6741.0937] [ 792] [depth= 2] . ( 19 sec) [ -6738.6898] [ 792] [depth= 1] . ( 20 sec) [ -6738.1658] [ 792] [depth= 3] . ( 20 sec) [ -6729.7761] [ 789] [depth= 6] . ( 20 sec) [ -6729.6848] [ 789] [depth= 1] . ( 20 sec) [ -6696.2730] [ 787] [depth= 7] . ( 20 sec) [ -6696.2416] [ 787] [depth= 4] . ( 20 sec) [ -6688.3488] [ 787] [depth= 9] . ( 20 sec) [ -6687.9071] [ 787] [depth= 3] . ( 20 sec) [ -6679.8490] [ 785] [depth= 3] . ( 20 sec) [ -6670.1917] [ 783] [depth= 18] . ( 20 sec) [ -6664.7010] [ 782] [depth= 1] . ( 20 sec) [ -6635.0600] [ 774] [depth= 19] . ( 21 sec) [ -6616.2009] [ 771] [depth= 14] . ( 21 sec) [ -6596.6923] [ 770] [depth= 19] . ( 21 sec) [ -6565.5018] [ 765] [depth= 27] . ( 21 sec) [ -6562.9884] [ 764] [depth= 1] . ( 21 sec) [ -6562.7247] [ 763] [depth= 12] . ( 21 sec) [ -6558.6824] [ 763] [depth= 11] . ( 21 sec) [ -6552.4628] [ 763] [depth= 1] . ( 21 sec) [ -6542.4487] [ 762] [depth= 2] . ( 21 sec) [ -6527.5968] [ 762] [depth= 15] . ( 21 sec) [ -6509.4163] [ 759] [depth= 13] . ( 22 sec) [ -6434.7442] [ 741] [depth= 20] . ( 22 sec) [ -6434.6476] [ 741] [depth= 1] . ( 22 sec) [ -6367.4301] [ 739] [depth= 3] . ( 22 sec) [ -6338.6996] [ 743] [depth= 17] . ( 22 sec) [ -6259.8523] [ 742] [depth= 16] . ( 22 sec) [ -6163.0701] [ 718] [depth= 5] . ( 22 sec) [ -6160.4578] [ 718] [depth= 1] . ( 23 sec) [ -6140.8569] [ 714] [depth= 22] . ( 23 sec) [ -6135.4598] [ 713] [depth= 2] . ( 23 sec) [ -6070.9818] [ 712] [depth= 3] . ( 23 sec) [ -6067.6850] [ 712] [depth= 3] . ( 23 sec) [ -5992.6631] [ 694] [depth= 4] . ( 23 sec) [ -5979.6672] [ 694] [depth= 10] . ( 23 sec) [ -5979.4843] [ 694] [depth= 7] . ( 23 sec) [ -5976.8677] [ 694] [depth= 1] . ( 23 sec) [ -5972.9711] [ 694] [depth= 1] . ( 23 sec) [ -5969.7560] [ 694] [depth= 1] . ( 23 sec) [ -5968.6380] [ 694] [depth= 8] . ( 24 sec) [ -5948.4286] [ 694] [depth= 1] . ( 24 sec) [ -5947.0740] [ 694] [depth= 10] . ( 24 sec) [ -5947.0632] [ 694] [depth= 10] . ( 24 sec) [ -5946.8694] [ 694] [depth= 10] . ( 24 sec) [ -5911.3473] [ 692] [depth= 16] . ( 24 sec) [ -5911.1294] [ 692] [depth= 2] . ( 24 sec) [ -5883.5184] [ 689] [depth= 13] . ( 24 sec) [ -5882.9435] [ 689] [depth= 1] . ( 24 sec) [ -5855.8688] [ 682] [depth= 9] . ( 25 sec) [ -5855.7471] [ 682] [depth= 1] . ( 25 sec) [ -5846.1112] [ 680] [depth= 1] . ( 25 sec) [ -5828.4651] [ 677] [depth= 13] . ( 25 sec) [ -5822.7171] [ 677] [depth= 7] . ( 25 sec) [ -5817.7601] [ 677] [depth= 6] . ( 25 sec) [ -5801.6156] [ 674] [depth= 19] . ( 25 sec) [ -5801.5430] [ 674] [depth= 27] . ( 25 sec) [ -5797.3180] [ 674] [depth= 5] . ( 25 sec) [ -5731.5752] [ 674] [depth= 2] . ( 26 sec) [ -5682.9569] [ 665] [depth= 18] . ( 27 sec) [ -5673.4560] [ 670] [depth= 25] . ( 27 sec) [ -5658.4239] [ 668] [depth= 15] . ( 27 sec) [ -5657.8103] [ 668] [depth= 2] . ( 27 sec) [ -5651.5086] [ 667] [depth= 26] . ( 27 sec) [ -5651.4841] [ 667] [depth= 2] . ( 27 sec) [ -5650.4788] [ 667] [depth= 7] . ( 27 sec) [ -5636.4607] [ 665] [depth= 7] . ( 27 sec) [ -5636.2672] [ 665] [depth= 2] . ( 27 sec) [ -5632.1210] [ 665] [depth= 8] . ( 27 sec) [ -5612.5056] [ 671] [depth= 12] . ( 28 sec) [ -5610.0228] [ 671] [depth= 6] . ( 28 sec) [ -5468.5043] [ 670] [depth= 1] . ( 28 sec) [ -5376.8954] [ 657] [depth= 17] . ( 28 sec) [ -5356.3417] [ 654] [depth= 11] . ( 28 sec) [ -5353.4174] [ 651] [depth= 1] . ( 28 sec) [ -5340.0692] [ 648] [depth= 11] . ( 28 sec) [ -5286.2055] [ 639] [depth= 15] . ( 28 sec) [ -5262.3485] [ 636] [depth= 18] . ( 28 sec) [ -5261.5953] [ 636] [depth= 4] . ( 28 sec) [ -5240.3137] [ 630] [depth= 11] . ( 29 sec) [ -5175.1067] [ 616] [depth= 14] . ( 29 sec) [ -5164.0450] [ 616] [depth= 2] . ( 29 sec) [ -5152.0340] [ 614] [depth= 5] . ( 29 sec) [ -5127.9332] [ 617] [depth= 5] . ( 29 sec) [ -5127.8377] [ 617] [depth= 2] . ( 29 sec) [ -5109.4433] [ 616] [depth= 3] . ( 30 sec) [ -5109.3879] [ 616] [depth= 2] . ( 30 sec) [ -5109.2775] [ 616] [depth= 7] . ( 30 sec) [ -5094.4062] [ 611] [depth= 12] . ( 30 sec) [ -5082.5378] [ 608] [depth= 4] . ( 30 sec) [ -5082.3165] [ 608] [depth= 1] . ( 30 sec) [ -5060.1654] [ 604] [depth= 13] . ( 30 sec) [ -5026.0523] [ 597] [depth= 4] . ( 30 sec) [ -5025.5654] [ 597] [depth= 2] . ( 30 sec) [ -5023.2374] [ 596] [depth= 1] . ( 31 sec) [ -5015.5180] [ 594] [depth= 12] . ( 31 sec) [ -5013.8628] [ 594] [depth= 1] . ( 31 sec) [ -5009.0586] [ 593] [depth= 4] . ( 31 sec) [ -5003.6974] [ 593] [depth= 2] . ( 31 sec) [ -4953.4097] [ 580] [depth= 15] . ( 31 sec) [ -4953.2792] [ 580] [depth= 2] . ( 31 sec) [ -4949.8486] [ 580] [depth= 1] . ( 32 sec) [ -4949.0004] [ 580] [depth= 5] . ( 32 sec) [ -4910.9883] [ 575] [depth= 3] . ( 32 sec) [ -4882.4771] [ 569] [depth= 7] . ( 32 sec) [ -4882.2192] [ 567] [depth= 3] . ( 32 sec) [ -4873.7435] [ 571] [depth= 3] . ( 33 sec) [ -4872.8851] [ 571] [depth= 1] . ( 33 sec) [ -4835.0922] [ 564] [depth= 18] . ( 33 sec) [ -4829.3025] [ 563] [depth= 5] . ( 33 sec) [ -4828.1104] [ 563] [depth= 6] . ( 33 sec) [ -4782.5132] [ 565] [depth= 22] . ( 33 sec) [ -4752.2559] [ 559] [depth= 7] . ( 33 sec) [ -4749.8263] [ 556] [depth= 23] . ( 34 sec) [ -4749.1875] [ 556] [depth= 22] . ( 34 sec) [ -4725.1638] [ 556] [depth= 1] . ( 34 sec) [ -4660.4625] [ 551] [depth= 6] . ( 34 sec) [ -4659.9053] [ 551] [depth= 1] . ( 34 sec) [ -4655.1194] [ 550] [depth= 3] . ( 34 sec) [ -4654.5822] [ 550] [depth= 1] . ( 34 sec) [ -4654.1951] [ 550] [depth= 11] . ( 34 sec) [ -4650.5490] [ 549] [depth= 2] . ( 34 sec) [ -4640.1768] [ 548] [depth= 5] . ( 34 sec) [ -4637.8205] [ 546] [depth= 14] . ( 34 sec) [ -4636.0702] [ 546] [depth= 3] . ( 35 sec) [ -4634.8702] [ 546] [depth= 5] . ( 35 sec) [ -4598.6712] [ 540] [depth= 11] . ( 35 sec) [ -4585.5700] [ 536] [depth= 22] . ( 35 sec) [ -4582.7249] [ 536] [depth= 4] . ( 35 sec) [ -4579.0159] [ 536] [depth= 10] . ( 35 sec) [ -4573.9098] [ 535] [depth= 4] . ( 36 sec) [ -4573.0022] [ 535] [depth= 1] . ( 36 sec) [ -4565.2006] [ 535] [depth= 15] . ( 36 sec) [ -4564.3990] [ 535] [depth= 1] . ( 36 sec) [ -4556.2396] [ 535] [depth= 1] . ( 36 sec) [ -4518.1620] [ 529] [depth= 19] . ( 36 sec) [ -4517.9490] [ 529] [depth= 1] . ( 36 sec) [ -4517.5494] [ 529] [depth= 26] . ( 36 sec) [ -4514.4129] [ 529] [depth= 2] . ( 36 sec) [ -4514.0697] [ 529] [depth= 11] . ( 37 sec) [ -4513.8649] [ 529] [depth= 1] . ( 37 sec) [ -4513.8076] [ 529] [depth= 1] . ( 37 sec) [ -4513.4817] [ 529] [depth= 18] . ( 37 sec) [ -4463.3823] [ 519] [depth= 11] . ( 37 sec) [ -4462.9570] [ 519] [depth= 2] . ( 37 sec) [ -4456.4882] [ 519] [depth= 3] . ( 37 sec) [ -4453.0912] [ 518] [depth= 6] . ( 37 sec) [ -4408.4885] [ 509] [depth= 19] . ( 38 sec) [ -4408.3770] [ 509] [depth= 1] . ( 38 sec) [ -4401.6848] [ 508] [depth= 19] . ( 38 sec) [ -4400.5285] [ 508] [depth= 2] . ( 38 sec) [ -4400.4742] [ 508] [depth= 2] . ( 38 sec) [ -4332.9994] [ 490] [depth= 22] . ( 38 sec) [ -4316.6147] [ 486] [depth= 10] . ( 38 sec) [ -4311.6509] [ 486] [depth= 1] . ( 38 sec) [ -4310.4845] [ 486] [depth= 15] . ( 38 sec) [ -4309.6990] [ 485] [depth= 1] . ( 38 sec) [ -4307.3215] [ 485] [depth= 4] . ( 40 sec) [ -4307.1418] [ 485] [depth= 17] . ( 40 sec) [ -4305.6550] [ 484] [depth= 13] . ( 40 sec) [ -4275.8631] [ 482] [depth= 5] . ( 40 sec) [ -4268.3345] [ 481] [depth= 13] . ( 40 sec) [ -4267.5164] [ 481] [depth= 4] . ( 40 sec) [ -4261.7748] [ 481] [depth= 3] . ( 40 sec) [ -4261.3860] [ 481] [depth= 1] . ( 41 sec) [ -4175.8454] [ 463] [depth= 18] . ( 41 sec) [ -4172.4782] [ 462] [depth= 1] . ( 41 sec) [ -4171.1644] [ 462] [depth= 1] . ( 41 sec) [ -4169.7855] [ 462] [depth= 4] . ( 41 sec) [ -4169.4400] [ 462] [depth= 1] . ( 41 sec) [ -4168.0038] [ 462] [depth= 1] . ( 41 sec) [ -4167.7870] [ 461] [depth= 1] . ( 41 sec) [ -4166.3261] [ 461] [depth= 4] . ( 41 sec) [ -4163.4565] [ 461] [depth= 6] . ( 41 sec) [ -4155.1253] [ 460] [depth= 3] . ( 43 sec) [ -4155.0533] [ 460] [depth= 1] . ( 43 sec) [ -4154.7398] [ 460] [depth= 1] . ( 44 sec) [ -4139.0267] [ 457] [depth= 3] . ( 44 sec) [ -4129.3103] [ 455] [depth= 11] . ( 44 sec) [ -4129.2774] [ 455] [depth= 8] . ( 44 sec) [ -4129.1937] [ 455] [depth= 4] . ( 45 sec) [ -4128.9148] [ 455] [depth= 1] . ( 45 sec) [ -4126.1508] [ 455] [depth= 3] . ( 45 sec) [ -4124.7309] [ 455] [depth= 9] . ( 45 sec) [ -4115.4728] [ 454] [depth= 7] . ( 45 sec) [ -4115.3541] [ 454] [depth= 4] . ( 45 sec) [ -4113.9148] [ 454] [depth= 4] . ( 46 sec) [ -4113.3085] [ 454] [depth= 11] . ( 46 sec) [ -4112.5447] [ 454] [depth= 9] . ( 46 sec) [ -4112.4390] [ 454] [depth= 2] . ( 46 sec) [ -4108.8647] [ 452] [depth= 2] . ( 46 sec) [ -4072.3745] [ 449] [depth= 11] . ( 46 sec) [ -4071.4394] [ 449] [depth= 3] . ( 47 sec) [ -4071.4165] [ 448] [depth= 7] . ( 47 sec) [ -4071.2539] [ 448] [depth= 2] . ( 47 sec) [ -4013.0254] [ 428] [depth= 13] . ( 47 sec) [ -4011.1565] [ 428] [depth= 3] . ( 47 sec) [ -4007.4961] [ 428] [depth= 1] . ( 47 sec) [ -4006.9729] [ 428] [depth= 1] . ( 47 sec) [ -4006.6750] [ 428] [depth= 3] . ( 47 sec) [ -4006.4213] [ 429] [depth= 6] . ( 47 sec) [ -4006.3522] [ 429] [depth= 5] . ( 48 sec) [ -3955.6008] [Branch lengths ] . ( 50 sec) [ -3892.8933] [GTR parameters ] . ( 50 sec) [ -3860.2541] [Alpha ][ 0.250961] . ( 50 sec) [ -3857.5952] [ 424] [depth= 4] . ( 52 sec) [ -3853.5958] [ 423] [depth= 10] . ( 53 sec) [ -3843.5467] [ 421] [depth= 10] . ( 53 sec) [ -3843.5357] [ 421] [depth= 2] . ( 53 sec) [ -3792.0211] [ 413] [depth= 8] . ( 53 sec) [ -3791.8890] [ 413] [depth= 10] . ( 53 sec) [ -3791.7553] [ 413] [depth= 1] . ( 54 sec) [ -3781.6217] [ 410] [depth= 25] . ( 54 sec) [ -3780.4525] [ 410] [depth= 1] . ( 56 sec) [ -3779.3368] [ 410] [depth= 2] . ( 56 sec) [ -3779.1434] [ 410] [depth= 7] . ( 60 sec) [ -3774.1169] [ 409] [depth= 3] . ( 60 sec) [ -3765.8805] [ 408] [depth= 3] . ( 62 sec) [ -3761.9621] [ 407] [depth= 6] . ( 63 sec) [ -3761.1262] [ 407] [depth= 10] . ( 63 sec) [ -3760.5988] [ 407] [depth= 14] . ( 65 sec) [ -3757.8070] [ 406] [depth= 1] . ( 65 sec) [ -3757.7648] [ 406] [depth= 9] . ( 65 sec) [ -3751.0055] [ 406] [depth= 19] . ( 67 sec) [ -3750.6541] [ 406] [depth= 1] . ( 68 sec) [ -3750.5500] [ 406] [depth= 7] . ( 73 sec) [ -3750.5176] [ 406] [depth= 1] . ( 73 sec) [ -3750.0682] [ 406] [depth= 6] . ( 78 sec) [ -3742.7152] [ 404] [depth= 3] . ( 79 sec) [ -3732.4428] [ 402] [depth= 8] . ( 79 sec) [ -3725.6471] [ 396] [depth= 1] . ( 79 sec) [ -3718.0279] [ 392] [depth= 4] . ( 79 sec) [ -3714.4126] [ 391] [depth= 12] . ( 79 sec) [ -3714.4016] [ 391] [depth= 5] . ( 79 sec) [ -3714.3528] [ 391] [depth= 3] . ( 80 sec) [ -3697.1243] [ 386] [depth= 12] . ( 81 sec) [ -3692.1121] [ 384] [depth= 2] . ( 81 sec) [ -3692.0793] [ 384] [depth= 10] . ( 81 sec) [ -3692.0494] [ 384] [depth= 1] . ( 81 sec) [ -3685.1604] [ 383] [depth= 13] . ( 82 sec) [ -3667.8475] [ 379] [depth= 21] . ( 82 sec) [ -3667.7980] [ 379] [depth= 2] . ( 82 sec) [ -3667.7645] [ 379] [depth= 1] . ( 84 sec) [ -3667.7472] [ 379] [depth= 1] . ( 84 sec) [ -3667.7114] [ 379] [depth= 5] . ( 86 sec) [ -3667.4032] [ 379] [depth= 5] . ( 86 sec) [ -3667.2148] [ 379] [depth= 2] . ( 86 sec) [ -3666.8712] [ 379] [depth= 3] . ( 86 sec) [ -3666.8523] [ 379] [depth= 4] . ( 87 sec) [ -3666.7123] [ 379] [depth= 2] . ( 87 sec) [ -3666.6535] [ 379] [depth= 3] . ( 87 sec) [ -3666.6268] [ 379] [depth= 7] . ( 88 sec) [ -3666.4105] [ 379] [depth= 3] . ( 88 sec) [ -3665.7853] [ 379] [depth= 2] . ( 88 sec) [ -3665.7290] [ 379] [depth= 5] . ( 89 sec) [ -3665.6716] [ 379] [depth= 8] . ( 89 sec) [ -3665.6093] [ 379] [depth= 3] . ( 89 sec) [ -3665.4599] [ 379] [depth= 7] . ( 90 sec) [ -3665.3397] [ 379] [depth= 2] . ( 91 sec) [ -3665.0700] [ 379] [depth= 1] . ( 91 sec) [ -3664.7161] [ 380] [depth= 1] . ( 91 sec) [ -3664.7054] [ 380] [depth= 1] . ( 91 sec) [ -3664.5198] [ 380] [depth= 1] . ( 92 sec) [ -3664.5096] [ 380] [depth= 1] . ( 92 sec) [ -3661.5270] [ 379] [depth= 3] . ( 92 sec) [ -3660.4065] [ 379] [depth= 1] . ( 93 sec) [ -3657.5505] [ 378] [depth= 1] . ( 94 sec) [ -3657.0663] [ 377] [depth= 2] . ( 94 sec) [ -3649.2151] [ 375] [depth= 5] . ( 94 sec) [ -3649.1032] [ 376] [depth= 1] . ( 94 sec) [ -3649.0861] [ 376] [depth= 1] . ( 95 sec) [ -3648.1702] [ 376] [depth= 1] . ( 95 sec) [ -3648.1054] [ 376] [depth= 5] . ( 95 sec) [ -3644.3701] [ 376] [depth= 4] . ( 96 sec) [ -3644.2314] [ 376] [depth= 1] . ( 96 sec) [ -3644.2084] [ 376] [depth= 1] . ( 96 sec) [ -3626.6771] [ 372] [depth= 2] . ( 96 sec) [ -3622.0460] [ 372] [depth= 2] . ( 96 sec) [ -3621.3389] [ 372] [depth= 5] . ( 96 sec) [ -3621.3183] [ 372] [depth= 3] . ( 97 sec) [ -3614.1380] [ 370] [depth= 4] . ( 97 sec) [ -3607.3242] [ 369] [depth= 8] . ( 97 sec) [ -3572.5287] [ 360] [depth= 6] . ( 98 sec) [ -3571.4161] [ 360] [depth= 15] . ( 99 sec) [ -3571.3747] [ 360] [depth= 3] . ( 100 sec) [ -3571.3099] [ 360] [depth= 2] . ( 100 sec) [ -3571.1705] [ 360] [depth= 1] . ( 100 sec) [ -3571.1355] [ 360] [depth= 1] . ( 100 sec) [ -3568.8491] [ 360] [depth= 2] . ( 103 sec) [ -3568.8288] [ 360] [depth= 1] . ( 103 sec) [ -3568.8132] [ 360] [depth= 1] . ( 104 sec) [ -3568.7352] [ 360] [depth= 3] . ( 104 sec) [ -3556.3458] [ 357] [depth= 1] . ( 104 sec) [ -3556.3073] [ 357] [depth= 6] . ( 105 sec) [ -3556.2959] [ 357] [depth= 1] . ( 106 sec) [ -3548.7414] [ 355] [depth= 9] . ( 106 sec) [ -3548.7111] [ 355] [depth= 8] . ( 108 sec) [ -3547.7929] [ 355] [depth= 8] . ( 110 sec) [ -3547.7795] [ 355] [depth= 4] . ( 110 sec) [ -3547.6798] [ 355] [depth= 3] . ( 113 sec) [ -3547.6650] [ 355] [depth= 1] . ( 113 sec) [ -3547.6016] [ 355] [depth= 2] . ( 115 sec) [ -3547.5596] [ 355] [depth= 8] . ( 117 sec) [ -3547.5445] [ 355] [depth= 2] . ( 117 sec) [ -3547.4924] [ 355] [depth= 2] . ( 117 sec) [ -3539.9607] [ 354] [depth= 9] . ( 118 sec) [ -3539.9326] [ 354] [depth= 4] . ( 118 sec) [ -3539.8971] [ 354] [depth= 5] . ( 120 sec) [ -3539.8341] [ 354] [depth= 2] . ( 125 sec) [ -3539.8234] [ 354] [depth= 3] . ( 125 sec) [ -3539.7399] [ 354] [depth= 1] . ( 126 sec) [ -3539.7114] [ 354] [depth= 1] . ( 131 sec) [ -3537.3383] [ 354] [depth= 4] . ( 133 sec) [ -3537.3266] [ 354] [depth= 2] . ( 133 sec) [ -3537.2724] [ 354] [depth= 6] . ( 133 sec) [ -3537.2571] [ 354] [depth= 3] . ( 137 sec) [ -3537.1600] [ 354] [depth= 2] . ( 137 sec) [ -3537.1335] [ 354] [depth= 1] . ( 137 sec) [ -3537.1187] [ 354] [depth= 1] . ( 137 sec) [ -3532.4711] [ 353] [depth= 17] . ( 137 sec) [ -3532.4155] [ 353] [depth= 4] . ( 137 sec) [ -3528.4953] [ 352] [depth= 8] . ( 138 sec) [ -3528.3035] [ 352] [depth= 3] . ( 140 sec) [ -3524.9472] [ 351] [depth= 4] . ( 140 sec) [ -3524.7599] [ 351] [depth= 3] . ( 142 sec) [ -3524.6238] [ 351] [depth= 5] . ( 142 sec) [ -3524.6036] [ 351] [depth= 4] . ( 143 sec) [ -3524.5166] [ 351] [depth= 2] . ( 144 sec) [ -3524.5057] [ 351] [depth= 5] . ( 147 sec) [ -3524.4752] [ 351] [depth= 5] . ( 147 sec) [ -3524.4553] [ 351] [depth= 1] . ( 147 sec) [ -3522.1138] [ 354] [depth= 1] . ( 148 sec) [ -3522.1030] [ 354] [depth= 1] . ( 148 sec) [ -3522.0203] [ 354] [depth= 9] . ( 149 sec) [ -3521.9828] [ 354] [depth= 5] . ( 150 sec) [ -3521.9274] [ 354] [depth= 2] . ( 151 sec) [ -3515.3485] [ 353] [depth= 10] . ( 151 sec) [ -3509.6869] [ 352] [depth= 5] . ( 152 sec) [ -3509.6761] [ 352] [depth= 1] . ( 152 sec) [ -3504.3303] [ 351] [depth= 6] . ( 153 sec) [ -3504.3199] [ 351] [depth= 1] . ( 154 sec) [ -3504.2328] [ 351] [depth= 1] . ( 157 sec) [ -3504.2187] [ 351] [depth= 4] . ( 160 sec) [ -3504.2042] [ 351] [depth= 5] . ( 161 sec) [ -3504.1923] [ 351] [depth= 1] . ( 162 sec) [ -3504.1640] [ 351] [depth= 4] . ( 163 sec) [ -3504.1396] [ 351] [depth= 1] . ( 164 sec) [ -3495.8681] [ 349] [depth= 8] . ( 166 sec) [ -3495.8569] [ 349] [depth= 3] . ( 166 sec) [ -3495.8435] [ 349] [depth= 3] . ( 167 sec) [ -3487.7170] [Branch lengths ] . ( 169 sec) [ -3485.8861] [GTR parameters ] . ( 169 sec) [ -3485.8103] [Alpha ][ 0.263467] . ( 169 sec) [ -3485.7946] [ 349] [depth= 1] . ( 173 sec) [ -3477.5889] [ 346] [depth= 1] . ( 183 sec) [ -3477.5199] [ 346] [depth= 2] . ( 189 sec) [ -3477.5033] [ 346] [depth= 11] . ( 192 sec) [ -3475.8683] [ 345] [depth= 3] . ( 210 sec) [ -3475.4910] [ 346] [depth= 4] . ( 214 sec) [ -3475.2430] [ 345] [depth= 12] . ( 214 sec) [ -3475.0678] [ 345] [depth= 6] . ( 223 sec) [ -3475.0437] [ 345] [depth= 5] . ( 254 sec) [ -3473.2654] [ 345] [depth= 1] . ( 256 sec) [ -3473.2468] [ 345] [depth= 3] . ( 263 sec) [ -3473.2361] [ 345] [depth= 9] . ( 264 sec) [ -3473.2221] [ 345] [depth= 1] . ( 267 sec) [ -3473.1815] [ 345] [depth= 1] . ( 285 sec) [ -3471.5286] [ 345] [depth= 10] . ( 319 sec) [ -3471.5060] [ 345] [depth= 5] . ( 319 sec) [ -3471.4952] [ 345] [depth= 4] . ( 336 sec) [ -3471.4406] [ 345] [depth= 6] . ( 356 sec) [ -3471.2887] [ 345] [depth= 5] . ( 357 sec) [ -3471.2759] [ 345] [depth= 3] . ( 359 sec) [ -3470.1859] [Branch lengths ] . ( 360 sec) [ -3470.0859] [GTR parameters ] . ( 360 sec) [ -3470.0738] [Alpha ][ 0.268781] . ( 411 sec) [ -3469.4423] [ 346] [depth= 16] . ( 425 sec) [ -3466.7146] [ 345] [depth= 6] . ( 494 sec) [ -3466.7021] [ 345] [depth= 11] . ( 567 sec) [ -3466.3202] [Branch lengths ] . ( 569 sec) [ -3466.2388] [GTR parameters ] . ( 569 sec) [ -3466.2388] [Alpha ][ 0.268781] . ( 569 sec) [ -3466.0540] [ 345] [depth= 1] . ( 570 sec) [ -3465.7102] [ 345] [depth= 1] . ( 570 sec) [ -3465.6939] [ 345] [depth= 1] . ( 590 sec) [ -3465.6472] [ 345] [depth= 14] . ( 600 sec) [ -3465.5894] [ 345] [depth= 1] . ( 609 sec) [ -3465.5743] [ 345] [depth= 1] . ( 617 sec) [ -3465.2230] [ 345] [depth= 1] . ( 665 sec) [ -3465.1427] [ 345] [depth= 2] . ( 763 sec) [ -3465.0514] [ 345] [depth= 13] . ( 770 sec) [ -3463.9859] [Branch lengths ] . ( 770 sec) [ -3463.9858] [GTR parameters ] . ( 771 sec) [ -3463.9858] [Alpha ][ 0.268781] . ( 803 sec) [ -3463.8721] [ 345] [depth= 3] . ( 973 sec) [ -3463.8027] [ 345] [depth= 1] . ( 978 sec) [ -3463.6727] [Branch lengths ] . ( 980 sec) [ -3463.6590] [GTR parameters ] . ( 980 sec) [ -3463.6583] [Alpha ][ 0.267419] . ( 1076 sec) [ -3463.6579] [Branch lengths ] . ( 1076 sec) [ -3463.6579] [Topology ] . ( 1078 sec) [ -3463.6578] [Topology ] . ( 1078 sec) [ -3463.6578] [GTR parameters ] . ( 1078 sec) [ -3463.6578] [Alpha ][ 0.267419] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -3463.657802. . [Random start 3/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 2 sec) [ -12960.3233] [GTR parameters ] . ( 2 sec) [ -12732.7695] [Alpha ][ 0.500960] . ( 2 sec) [ -12658.1717] [ 1225] [depth= 22] . ( 2 sec) [ -12550.3256] [ 1215] [depth= 14] . ( 3 sec) [ -12515.4036] [ 1214] [depth= 17] . ( 3 sec) [ -12467.3960] [ 1211] [depth= 1] . ( 3 sec) [ -12372.3751] [ 1210] [depth= 3] . ( 3 sec) [ -12344.0031] [ 1210] [depth= 1] . ( 3 sec) [ -12321.7010] [ 1206] [depth= 1] . ( 3 sec) [ -12234.9388] [ 1202] [depth= 4] . ( 3 sec) [ -12149.7249] [ 1192] [depth= 5] . ( 3 sec) [ -12149.6811] [ 1192] [depth= 1] . ( 3 sec) [ -12064.0063] [ 1181] [depth= 9] . ( 3 sec) [ -12055.6609] [ 1181] [depth= 1] . ( 3 sec) [ -12033.7789] [ 1181] [depth= 2] . ( 4 sec) [ -12023.1932] [ 1180] [depth= 3] . ( 4 sec) [ -11854.0963] [ 1179] [depth= 2] . ( 4 sec) [ -11847.8041] [ 1179] [depth= 5] . ( 4 sec) [ -11820.1949] [ 1179] [depth= 3] . ( 4 sec) [ -11602.0227] [ 1177] [depth= 10] . ( 4 sec) [ -11572.3535] [ 1177] [depth= 1] . ( 4 sec) [ -11569.3877] [ 1177] [depth= 1] . ( 4 sec) [ -11557.1226] [ 1177] [depth= 4] . ( 4 sec) [ -11469.7955] [ 1177] [depth= 6] . ( 4 sec) [ -11321.7020] [ 1177] [depth= 6] . ( 4 sec) [ -11320.7084] [ 1177] [depth= 1] . ( 5 sec) [ -11125.4836] [ 1177] [depth= 2] . ( 5 sec) [ -11100.1022] [ 1175] [depth= 2] . ( 5 sec) [ -10993.8275] [ 1174] [depth= 24] . ( 5 sec) [ -10958.5778] [ 1171] [depth= 24] . ( 5 sec) [ -10911.0889] [ 1167] [depth= 3] . ( 5 sec) [ -10729.2854] [ 1167] [depth= 1] . ( 5 sec) [ -10646.7990] [ 1160] [depth= 6] . ( 5 sec) [ -10549.8923] [ 1137] [depth= 4] . ( 5 sec) [ -10516.4070] [ 1136] [depth= 13] . ( 5 sec) [ -10442.1069] [ 1136] [depth= 4] . ( 5 sec) [ -10439.6345] [ 1136] [depth= 3] . ( 6 sec) [ -10401.0485] [ 1130] [depth= 7] . ( 6 sec) [ -10338.5170] [ 1128] [depth= 12] . ( 6 sec) [ -10234.1747] [ 1117] [depth= 8] . ( 6 sec) [ -10168.2822] [ 1112] [depth= 7] . ( 6 sec) [ -10141.6049] [ 1111] [depth= 1] . ( 6 sec) [ -9981.4581] [ 1105] [depth= 9] . ( 6 sec) [ -9975.0029] [ 1105] [depth= 2] . ( 6 sec) [ -9956.0124] [ 1105] [depth= 3] . ( 6 sec) [ -9878.8623] [ 1101] [depth= 12] . ( 6 sec) [ -9820.1331] [ 1101] [depth= 1] . ( 6 sec) [ -9774.8622] [ 1101] [depth= 1] . ( 7 sec) [ -9771.8362] [ 1099] [depth= 10] . ( 7 sec) [ -9738.4324] [ 1099] [depth= 8] . ( 7 sec) [ -9734.4091] [ 1099] [depth= 6] . ( 7 sec) [ -9697.2596] [ 1093] [depth= 16] . ( 7 sec) [ -9638.6485] [ 1085] [depth= 31] . ( 7 sec) [ -9633.1846] [ 1084] [depth= 10] . ( 7 sec) [ -9601.1581] [ 1077] [depth= 9] . ( 7 sec) [ -9600.7961] [ 1077] [depth= 2] . ( 7 sec) [ -9511.2786] [ 1059] [depth= 13] . ( 8 sec) [ -9505.4545] [ 1059] [depth= 18] . ( 8 sec) [ -9386.2502] [ 1051] [depth= 13] . ( 8 sec) [ -9333.6553] [ 1047] [depth= 11] . ( 8 sec) [ -9291.4210] [ 1047] [depth= 1] . ( 8 sec) [ -9289.1717] [ 1046] [depth= 24] . ( 8 sec) [ -9285.9397] [ 1046] [depth= 1] . ( 8 sec) [ -9266.8197] [ 1045] [depth= 13] . ( 8 sec) [ -9249.1957] [ 1038] [depth= 14] . ( 8 sec) [ -9211.3762] [ 1034] [depth= 3] . ( 8 sec) [ -9186.1625] [ 1030] [depth= 9] . ( 9 sec) [ -9185.2887] [ 1030] [depth= 2] . ( 9 sec) [ -9094.0335] [ 1015] [depth= 10] . ( 9 sec) [ -9047.5666] [ 1013] [depth= 22] . ( 9 sec) [ -9041.6264] [ 1013] [depth= 15] . ( 9 sec) [ -8991.3985] [ 1009] [depth= 15] . ( 9 sec) [ -8924.4379] [ 998] [depth= 9] . ( 9 sec) [ -8912.3379] [ 995] [depth= 1] . ( 9 sec) [ -8911.7790] [ 995] [depth= 1] . ( 9 sec) [ -8886.5762] [ 995] [depth= 21] . ( 9 sec) [ -8860.4903] [ 993] [depth= 18] . ( 10 sec) [ -8775.0199] [ 985] [depth= 24] . ( 10 sec) [ -8770.2091] [ 984] [depth= 2] . ( 10 sec) [ -8758.2537] [ 983] [depth= 3] . ( 10 sec) [ -8678.9691] [ 972] [depth= 7] . ( 10 sec) [ -8626.6986] [ 967] [depth= 9] . ( 10 sec) [ -8612.6530] [ 965] [depth= 10] . ( 10 sec) [ -8612.1370] [ 965] [depth= 1] . ( 10 sec) [ -8608.2837] [ 964] [depth= 2] . ( 10 sec) [ -8557.7293] [ 960] [depth= 17] . ( 10 sec) [ -8477.8776] [ 958] [depth= 10] . ( 11 sec) [ -8461.6165] [ 958] [depth= 3] . ( 11 sec) [ -8328.3612] [ 948] [depth= 25] . ( 11 sec) [ -8317.5452] [ 948] [depth= 1] . ( 11 sec) [ -8157.3104] [ 923] [depth= 21] . ( 11 sec) [ -8129.4164] [ 918] [depth= 23] . ( 11 sec) [ -8088.5316] [ 914] [depth= 18] . ( 11 sec) [ -8060.3019] [ 914] [depth= 1] . ( 11 sec) [ -8006.8960] [ 914] [depth= 1] . ( 11 sec) [ -7916.9873] [ 891] [depth= 18] . ( 12 sec) [ -7899.7144] [ 890] [depth= 21] . ( 12 sec) [ -7866.3936] [ 890] [depth= 11] . ( 12 sec) [ -7851.1238] [ 887] [depth= 10] . ( 12 sec) [ -7848.7940] [ 887] [depth= 10] . ( 12 sec) [ -7848.5979] [ 887] [depth= 10] . ( 12 sec) [ -7729.3163] [ 863] [depth= 10] . ( 12 sec) [ -7701.2723] [ 857] [depth= 13] . ( 12 sec) [ -7667.5509] [ 851] [depth= 7] . ( 12 sec) [ -7630.3708] [ 845] [depth= 9] . ( 13 sec) [ -7625.6169] [ 843] [depth= 11] . ( 13 sec) [ -7622.4669] [ 843] [depth= 13] . ( 13 sec) [ -7600.5143] [ 842] [depth= 9] . ( 13 sec) [ -7548.0118] [ 839] [depth= 15] . ( 13 sec) [ -7546.7614] [ 839] [depth= 1] . ( 13 sec) [ -7541.7719] [ 839] [depth= 18] . ( 13 sec) [ -7492.3601] [ 831] [depth= 10] . ( 13 sec) [ -7483.9467] [ 831] [depth= 20] . ( 13 sec) [ -7466.2130] [ 827] [depth= 9] . ( 13 sec) [ -7465.2986] [ 826] [depth= 1] . ( 14 sec) [ -7458.8225] [ 822] [depth= 2] . ( 14 sec) [ -7364.6726] [ 822] [depth= 7] . ( 14 sec) [ -7321.1820] [ 819] [depth= 14] . ( 14 sec) [ -7316.1253] [ 819] [depth= 1] . ( 14 sec) [ -7300.7539] [ 817] [depth= 4] . ( 14 sec) [ -7124.1985] [ 810] [depth= 13] . ( 14 sec) [ -7123.2669] [ 810] [depth= 16] . ( 14 sec) [ -7121.0479] [ 811] [depth= 1] . ( 14 sec) [ -7031.8367] [ 790] [depth= 15] . ( 14 sec) [ -6968.5755] [ 790] [depth= 2] . ( 15 sec) [ -6952.2795] [ 788] [depth= 10] . ( 15 sec) [ -6937.5217] [ 788] [depth= 16] . ( 15 sec) [ -6795.1617] [ 771] [depth= 6] . ( 15 sec) [ -6791.1283] [ 771] [depth= 4] . ( 15 sec) [ -6782.7289] [ 771] [depth= 1] . ( 15 sec) [ -6764.2275] [ 767] [depth= 14] . ( 15 sec) [ -6760.2583] [ 765] [depth= 10] . ( 15 sec) [ -6756.6821] [ 765] [depth= 7] . ( 15 sec) [ -6741.7027] [ 765] [depth= 1] . ( 15 sec) [ -6735.4377] [ 765] [depth= 14] . ( 16 sec) [ -6718.5366] [ 765] [depth= 2] . ( 16 sec) [ -6704.7043] [ 765] [depth= 4] . ( 16 sec) [ -6669.2461] [ 765] [depth= 1] . ( 16 sec) [ -6588.5553] [ 758] [depth= 25] . ( 16 sec) [ -6523.4186] [ 750] [depth= 17] . ( 16 sec) [ -6477.2064] [ 743] [depth= 25] . ( 16 sec) [ -6459.9021] [ 742] [depth= 3] . ( 16 sec) [ -6443.3492] [ 742] [depth= 1] . ( 16 sec) [ -6419.4788] [ 737] [depth= 5] . ( 16 sec) [ -6412.0886] [ 736] [depth= 5] . ( 17 sec) [ -6357.8788] [ 726] [depth= 19] . ( 17 sec) [ -6354.5329] [ 726] [depth= 17] . ( 17 sec) [ -6323.3334] [ 722] [depth= 1] . ( 17 sec) [ -6320.4568] [ 722] [depth= 3] . ( 17 sec) [ -6109.7092] [ 714] [depth= 8] . ( 17 sec) [ -6105.9290] [ 714] [depth= 1] . ( 17 sec) [ -6087.9238] [ 707] [depth= 1] . ( 17 sec) [ -6065.0668] [ 704] [depth= 2] . ( 17 sec) [ -6061.0274] [ 704] [depth= 3] . ( 17 sec) [ -6060.2142] [ 704] [depth= 1] . ( 18 sec) [ -6058.4780] [ 702] [depth= 8] . ( 18 sec) [ -6008.2298] [ 693] [depth= 13] . ( 18 sec) [ -6006.9747] [ 693] [depth= 2] . ( 18 sec) [ -6001.4557] [ 692] [depth= 4] . ( 18 sec) [ -5969.2040] [ 687] [depth= 19] . ( 18 sec) [ -5955.6680] [ 685] [depth= 6] . ( 18 sec) [ -5946.4149] [ 684] [depth= 16] . ( 18 sec) [ -5946.3449] [ 684] [depth= 27] . ( 19 sec) [ -5943.4165] [ 683] [depth= 3] . ( 19 sec) [ -5942.7841] [ 683] [depth= 2] . ( 19 sec) [ -5935.5564] [ 682] [depth= 16] . ( 19 sec) [ -5935.0901] [ 682] [depth= 3] . ( 19 sec) [ -5935.0197] [ 682] [depth= 1] . ( 19 sec) [ -5900.5626] [ 675] [depth= 10] . ( 19 sec) [ -5892.2702] [ 674] [depth= 4] . ( 19 sec) [ -5892.2310] [ 674] [depth= 5] . ( 19 sec) [ -5892.0657] [ 674] [depth= 2] . ( 20 sec) [ -5865.4951] [ 670] [depth= 21] . ( 20 sec) [ -5860.5168] [ 670] [depth= 9] . ( 20 sec) [ -5827.7066] [ 664] [depth= 16] . ( 20 sec) [ -5827.6389] [ 664] [depth= 2] . ( 20 sec) [ -5827.6230] [ 664] [depth= 6] . ( 20 sec) [ -5820.2994] [ 663] [depth= 1] . ( 20 sec) [ -5799.4460] [ 661] [depth= 12] . ( 20 sec) [ -5771.0708] [ 654] [depth= 9] . ( 21 sec) [ -5765.5361] [ 653] [depth= 1] . ( 21 sec) [ -5764.1974] [ 653] [depth= 1] . ( 21 sec) [ -5728.4551] [ 653] [depth= 12] . ( 21 sec) [ -5696.8557] [ 647] [depth= 14] . ( 21 sec) [ -5696.5506] [ 647] [depth= 7] . ( 21 sec) [ -5686.5274] [ 647] [depth= 2] . ( 21 sec) [ -5629.6697] [ 640] [depth= 11] . ( 21 sec) [ -5574.6943] [ 638] [depth= 1] . ( 21 sec) [ -5574.5269] [ 638] [depth= 21] . ( 21 sec) [ -5525.3670] [ 630] [depth= 15] . ( 22 sec) [ -5523.1209] [ 630] [depth= 1] . ( 22 sec) [ -5439.6425] [ 626] [depth= 21] . ( 22 sec) [ -5439.6321] [ 626] [depth= 2] . ( 22 sec) [ -5428.8053] [ 626] [depth= 7] . ( 22 sec) [ -5428.4262] [ 626] [depth= 1] . ( 22 sec) [ -5409.5250] [ 625] [depth= 1] . ( 22 sec) [ -5404.7805] [ 625] [depth= 9] . ( 22 sec) [ -5400.4670] [ 625] [depth= 8] . ( 22 sec) [ -5398.2007] [ 625] [depth= 1] . ( 22 sec) [ -5398.1392] [ 625] [depth= 4] . ( 23 sec) [ -5372.6170] [ 625] [depth= 2] . ( 23 sec) [ -5364.1987] [ 624] [depth= 3] . ( 23 sec) [ -5357.5815] [ 624] [depth= 9] . ( 23 sec) [ -5357.3203] [ 624] [depth= 4] . ( 23 sec) [ -5307.3368] [ 624] [depth= 2] . ( 23 sec) [ -5303.1168] [ 622] [depth= 24] . ( 23 sec) [ -5302.8550] [ 620] [depth= 1] . ( 23 sec) [ -5302.7044] [ 620] [depth= 1] . ( 23 sec) [ -5260.2155] [ 614] [depth= 3] . ( 24 sec) [ -5250.7415] [ 613] [depth= 5] . ( 24 sec) [ -5228.9791] [ 610] [depth= 16] . ( 24 sec) [ -5227.5260] [ 610] [depth= 1] . ( 24 sec) [ -5226.9243] [ 610] [depth= 3] . ( 24 sec) [ -5203.8426] [ 605] [depth= 6] . ( 24 sec) [ -5203.3469] [ 605] [depth= 1] . ( 24 sec) [ -5199.4145] [ 604] [depth= 1] . ( 24 sec) [ -5193.3736] [ 603] [depth= 3] . ( 24 sec) [ -5179.9358] [ 600] [depth= 16] . ( 24 sec) [ -5171.1712] [ 598] [depth= 5] . ( 25 sec) [ -5143.5944] [ 593] [depth= 3] . ( 25 sec) [ -5141.8810] [ 593] [depth= 22] . ( 25 sec) [ -5129.2299] [ 588] [depth= 5] . ( 25 sec) [ -5086.5086] [ 575] [depth= 1] . ( 25 sec) [ -5064.5090] [ 570] [depth= 3] . ( 25 sec) [ -5064.3563] [ 570] [depth= 1] . ( 25 sec) [ -5064.2878] [ 570] [depth= 4] . ( 25 sec) [ -5050.0029] [ 570] [depth= 9] . ( 25 sec) [ -5016.4536] [ 567] [depth= 13] . ( 26 sec) [ -5009.1109] [ 566] [depth= 25] . ( 26 sec) [ -4989.9538] [ 566] [depth= 3] . ( 26 sec) [ -4983.4527] [ 564] [depth= 3] . ( 26 sec) [ -4983.3480] [ 564] [depth= 11] . ( 26 sec) [ -4983.3096] [ 564] [depth= 4] . ( 26 sec) [ -4926.6594] [ 556] [depth= 8] . ( 26 sec) [ -4901.9794] [ 555] [depth= 12] . ( 26 sec) [ -4901.0506] [ 554] [depth= 7] . ( 27 sec) [ -4895.5458] [ 554] [depth= 1] . ( 27 sec) [ -4892.9894] [ 553] [depth= 10] . ( 27 sec) [ -4891.9631] [ 553] [depth= 3] . ( 27 sec) [ -4851.6708] [ 546] [depth= 2] . ( 27 sec) [ -4813.0585] [ 541] [depth= 8] . ( 27 sec) [ -4792.2159] [ 542] [depth= 7] . ( 27 sec) [ -4780.6360] [ 541] [depth= 10] . ( 27 sec) [ -4778.0262] [ 540] [depth= 6] . ( 27 sec) [ -4750.3146] [ 534] [depth= 15] . ( 28 sec) [ -4750.2533] [ 534] [depth= 3] . ( 28 sec) [ -4743.9561] [ 532] [depth= 10] . ( 28 sec) [ -4732.0533] [ 526] [depth= 12] . ( 28 sec) [ -4698.4575] [ 522] [depth= 1] . ( 28 sec) [ -4665.1997] [ 517] [depth= 13] . ( 28 sec) [ -4664.7945] [ 517] [depth= 2] . ( 28 sec) [ -4647.8591] [ 513] [depth= 7] . ( 28 sec) [ -4625.4867] [ 510] [depth= 7] . ( 28 sec) [ -4620.8607] [ 509] [depth= 1] . ( 29 sec) [ -4620.6025] [ 509] [depth= 4] . ( 29 sec) [ -4619.6772] [ 509] [depth= 2] . ( 29 sec) [ -4617.7363] [ 509] [depth= 17] . ( 29 sec) [ -4617.3093] [ 509] [depth= 10] . ( 29 sec) [ -4617.1341] [ 509] [depth= 16] . ( 31 sec) [ -4616.8125] [ 509] [depth= 2] . ( 32 sec) [ -4590.6375] [ 505] [depth= 14] . ( 32 sec) [ -4585.2600] [ 504] [depth= 2] . ( 32 sec) [ -4576.9718] [ 502] [depth= 6] . ( 32 sec) [ -4576.0960] [ 502] [depth= 6] . ( 32 sec) [ -4576.0309] [ 502] [depth= 16] . ( 32 sec) [ -4575.4720] [ 502] [depth= 2] . ( 32 sec) [ -4564.3218] [ 499] [depth= 12] . ( 32 sec) [ -4559.5115] [ 498] [depth= 7] . ( 33 sec) [ -4559.4411] [ 498] [depth= 6] . ( 33 sec) [ -4557.0759] [ 498] [depth= 7] . ( 33 sec) [ -4556.7943] [ 498] [depth= 2] . ( 33 sec) [ -4554.5995] [ 498] [depth= 11] . ( 33 sec) [ -4554.4948] [ 498] [depth= 5] . ( 33 sec) [ -4550.1648] [ 498] [depth= 8] . ( 33 sec) [ -4547.0752] [ 497] [depth= 2] . ( 33 sec) [ -4545.8190] [ 497] [depth= 1] . ( 33 sec) [ -4525.4353] [ 497] [depth= 19] . ( 33 sec) [ -4525.0079] [ 497] [depth= 1] . ( 34 sec) [ -4491.2625] [ 490] [depth= 10] . ( 35 sec) [ -4490.6793] [ 490] [depth= 6] . ( 35 sec) [ -4467.5325] [ 487] [depth= 10] . ( 35 sec) [ -4466.3963] [ 487] [depth= 1] . ( 35 sec) [ -4441.5212] [ 483] [depth= 1] . ( 35 sec) [ -4439.5408] [ 483] [depth= 1] . ( 36 sec) [ -4439.4902] [ 483] [depth= 25] . ( 36 sec) [ -4439.3732] [ 483] [depth= 1] . ( 36 sec) [ -4436.0104] [ 483] [depth= 28] . ( 36 sec) [ -4435.9730] [ 483] [depth= 2] . ( 36 sec) [ -4420.3734] [ 488] [depth= 6] . ( 36 sec) [ -4415.9763] [ 487] [depth= 26] . ( 37 sec) [ -4387.3750] [ 482] [depth= 4] . ( 37 sec) [ -4380.6973] [ 481] [depth= 1] . ( 37 sec) [ -4380.5385] [ 481] [depth= 12] . ( 37 sec) [ -4371.8234] [ 479] [depth= 3] . ( 37 sec) [ -4371.7840] [ 479] [depth= 1] . ( 37 sec) [ -4355.4311] [ 477] [depth= 14] . ( 37 sec) [ -4353.0619] [ 477] [depth= 2] . ( 37 sec) [ -4351.3623] [ 477] [depth= 1] . ( 37 sec) [ -4349.4573] [ 475] [depth= 1] . ( 38 sec) [ -4344.8468] [ 475] [depth= 6] . ( 38 sec) [ -4344.6995] [ 475] [depth= 1] . ( 38 sec) [ -4320.7526] [ 471] [depth= 12] . ( 38 sec) [ -4318.3981] [ 471] [depth= 1] . ( 38 sec) [ -4317.5624] [ 471] [depth= 22] . ( 38 sec) [ -4316.6634] [ 471] [depth= 9] . ( 39 sec) [ -4312.8751] [ 470] [depth= 1] . ( 39 sec) [ -4310.0749] [ 470] [depth= 1] . ( 40 sec) [ -4307.4713] [ 472] [depth= 5] . ( 40 sec) [ -4298.0956] [ 470] [depth= 8] . ( 40 sec) [ -4291.3878] [ 469] [depth= 4] . ( 40 sec) [ -4291.3010] [ 469] [depth= 12] . ( 40 sec) [ -4267.1668] [ 464] [depth= 20] . ( 40 sec) [ -4252.7898] [ 461] [depth= 10] . ( 41 sec) [ -4252.3354] [ 461] [depth= 1] . ( 41 sec) [ -4238.9310] [ 458] [depth= 23] . ( 41 sec) [ -4235.5956] [ 457] [depth= 1] . ( 42 sec) [ -4233.2016] [ 457] [depth= 16] . ( 42 sec) [ -4179.7600] [ 446] [depth= 25] . ( 42 sec) [ -4179.5345] [ 446] [depth= 1] . ( 42 sec) [ -4141.4425] [ 441] [depth= 22] . ( 42 sec) [ -4130.7048] [ 441] [depth= 1] . ( 42 sec) [ -4130.1540] [ 441] [depth= 4] . ( 42 sec) [ -4100.8280] [ 436] [depth= 11] . ( 42 sec) [ -4094.0899] [ 433] [depth= 15] . ( 42 sec) [ -4090.5266] [ 433] [depth= 1] . ( 42 sec) [ -4079.5692] [ 433] [depth= 26] . ( 43 sec) [ -4079.4322] [ 433] [depth= 4] . ( 43 sec) [ -4078.2563] [ 433] [depth= 1] . ( 43 sec) [ -4072.7977] [ 432] [depth= 2] . ( 43 sec) [ -4072.7312] [ 432] [depth= 6] . ( 44 sec) [ -4071.3236] [ 432] [depth= 10] . ( 45 sec) [ -4070.0192] [ 432] [depth= 2] . ( 45 sec) [ -4069.8780] [ 432] [depth= 1] . ( 45 sec) [ -4069.7773] [ 432] [depth= 2] . ( 45 sec) [ -4069.7312] [ 432] [depth= 1] . ( 45 sec) [ -4055.7463] [ 428] [depth= 5] . ( 45 sec) [ -4049.5814] [ 427] [depth= 10] . ( 45 sec) [ -4049.0266] [ 427] [depth= 2] . ( 46 sec) [ -4041.2460] [ 425] [depth= 12] . ( 46 sec) [ -4041.0014] [ 425] [depth= 2] . ( 46 sec) [ -3989.8362] [Branch lengths ] . ( 49 sec) [ -3909.6822] [GTR parameters ] . ( 50 sec) [ -3877.8043] [Alpha ][ 0.250961] . ( 50 sec) [ -3870.7942] [ 418] [depth= 11] . ( 50 sec) [ -3827.8215] [ 413] [depth= 1] . ( 50 sec) [ -3822.5992] [ 412] [depth= 9] . ( 52 sec) [ -3821.6568] [ 412] [depth= 8] . ( 54 sec) [ -3814.4627] [ 411] [depth= 5] . ( 54 sec) [ -3814.3918] [ 411] [depth= 1] . ( 55 sec) [ -3813.1934] [ 411] [depth= 1] . ( 55 sec) [ -3805.5783] [ 408] [depth= 2] . ( 55 sec) [ -3805.4400] [ 407] [depth= 3] . ( 56 sec) [ -3790.6273] [ 406] [depth= 2] . ( 56 sec) [ -3785.0296] [ 406] [depth= 2] . ( 58 sec) [ -3784.3508] [ 406] [depth= 2] . ( 58 sec) [ -3781.9125] [ 405] [depth= 3] . ( 58 sec) [ -3773.9124] [ 404] [depth= 4] . ( 59 sec) [ -3770.4571] [ 403] [depth= 7] . ( 61 sec) [ -3760.7333] [ 400] [depth= 3] . ( 61 sec) [ -3740.9501] [ 396] [depth= 12] . ( 61 sec) [ -3740.0694] [ 396] [depth= 3] . ( 61 sec) [ -3737.6265] [ 395] [depth= 1] . ( 62 sec) [ -3737.4697] [ 395] [depth= 4] . ( 63 sec) [ -3737.2889] [ 395] [depth= 1] . ( 65 sec) [ -3737.2745] [ 395] [depth= 10] . ( 66 sec) [ -3737.2538] [ 395] [depth= 3] . ( 68 sec) [ -3736.2650] [ 395] [depth= 3] . ( 69 sec) [ -3731.3126] [ 394] [depth= 4] . ( 69 sec) [ -3731.2617] [ 394] [depth= 2] . ( 71 sec) [ -3731.1585] [ 394] [depth= 3] . ( 72 sec) [ -3725.4372] [ 393] [depth= 2] . ( 72 sec) [ -3725.3707] [ 392] [depth= 1] . ( 74 sec) [ -3721.9797] [ 392] [depth= 2] . ( 74 sec) [ -3721.5240] [ 392] [depth= 1] . ( 74 sec) [ -3719.3617] [ 392] [depth= 1] . ( 75 sec) [ -3710.2569] [ 389] [depth= 2] . ( 76 sec) [ -3703.7940] [ 388] [depth= 3] . ( 76 sec) [ -3703.7214] [ 388] [depth= 3] . ( 76 sec) [ -3703.5059] [ 388] [depth= 2] . ( 77 sec) [ -3703.4742] [ 388] [depth= 2] . ( 77 sec) [ -3703.4387] [ 388] [depth= 3] . ( 77 sec) [ -3703.2162] [ 388] [depth= 1] . ( 78 sec) [ -3703.1670] [ 388] [depth= 5] . ( 78 sec) [ -3695.4811] [ 386] [depth= 12] . ( 79 sec) [ -3694.6571] [ 386] [depth= 1] . ( 79 sec) [ -3677.3800] [ 381] [depth= 1] . ( 79 sec) [ -3674.3307] [ 381] [depth= 2] . ( 80 sec) [ -3674.2888] [ 381] [depth= 2] . ( 80 sec) [ -3674.2105] [ 381] [depth= 8] . ( 80 sec) [ -3645.3938] [ 376] [depth= 1] . ( 80 sec) [ -3644.7068] [ 375] [depth= 2] . ( 81 sec) [ -3642.1188] [ 375] [depth= 2] . ( 81 sec) [ -3642.0643] [ 375] [depth= 2] . ( 81 sec) [ -3642.0008] [ 375] [depth= 2] . ( 83 sec) [ -3641.9270] [ 375] [depth= 16] . ( 83 sec) [ -3641.8203] [ 375] [depth= 1] . ( 83 sec) [ -3641.0696] [ 375] [depth= 9] . ( 83 sec) [ -3633.9494] [ 373] [depth= 4] . ( 84 sec) [ -3633.8857] [ 373] [depth= 2] . ( 84 sec) [ -3633.7129] [ 373] [depth= 1] . ( 86 sec) [ -3633.4126] [ 373] [depth= 1] . ( 86 sec) [ -3628.8692] [ 372] [depth= 11] . ( 86 sec) [ -3627.2587] [ 371] [depth= 1] . ( 86 sec) [ -3624.2889] [ 371] [depth= 2] . ( 86 sec) [ -3624.2749] [ 371] [depth= 5] . ( 87 sec) [ -3624.2514] [ 371] [depth= 15] . ( 88 sec) [ -3622.7582] [ 371] [depth= 2] . ( 91 sec) [ -3616.4735] [ 370] [depth= 3] . ( 92 sec) [ -3615.4041] [ 370] [depth= 2] . ( 95 sec) [ -3615.2953] [ 370] [depth= 1] . ( 95 sec) [ -3615.2663] [ 370] [depth= 2] . ( 98 sec) [ -3614.5991] [ 370] [depth= 1] . ( 98 sec) [ -3614.5391] [ 370] [depth= 6] . ( 98 sec) [ -3614.5122] [ 370] [depth= 5] . ( 98 sec) [ -3614.4883] [ 370] [depth= 1] . ( 99 sec) [ -3614.3581] [ 370] [depth= 1] . ( 99 sec) [ -3613.4490] [ 370] [depth= 3] . ( 99 sec) [ -3613.3065] [ 370] [depth= 1] . ( 99 sec) [ -3611.3070] [ 370] [depth= 13] . ( 101 sec) [ -3604.4519] [ 369] [depth= 7] . ( 103 sec) [ -3602.4494] [ 369] [depth= 12] . ( 103 sec) [ -3597.6081] [ 368] [depth= 1] . ( 103 sec) [ -3597.5970] [ 368] [depth= 4] . ( 103 sec) [ -3597.4748] [ 368] [depth= 5] . ( 104 sec) [ -3597.3175] [ 368] [depth= 2] . ( 104 sec) [ -3597.2855] [ 368] [depth= 3] . ( 104 sec) [ -3590.5976] [ 367] [depth= 13] . ( 104 sec) [ -3587.3695] [ 365] [depth= 7] . ( 104 sec) [ -3587.3341] [ 365] [depth= 6] . ( 104 sec) [ -3587.1335] [ 365] [depth= 5] . ( 105 sec) [ -3587.1100] [ 365] [depth= 13] . ( 106 sec) [ -3587.0928] [ 365] [depth= 5] . ( 106 sec) [ -3587.0781] [ 365] [depth= 4] . ( 107 sec) [ -3582.8770] [ 364] [depth= 3] . ( 107 sec) [ -3582.8034] [ 364] [depth= 2] . ( 108 sec) [ -3582.7847] [ 364] [depth= 2] . ( 108 sec) [ -3578.1839] [ 363] [depth= 6] . ( 111 sec) [ -3562.6587] [ 361] [depth= 5] . ( 113 sec) [ -3558.4914] [ 360] [depth= 16] . ( 114 sec) [ -3558.2466] [ 360] [depth= 3] . ( 114 sec) [ -3553.0298] [ 358] [depth= 10] . ( 114 sec) [ -3545.1750] [ 356] [depth= 3] . ( 116 sec) [ -3545.1596] [ 356] [depth= 1] . ( 118 sec) [ -3545.1489] [ 356] [depth= 1] . ( 120 sec) [ -3544.1317] [ 356] [depth= 4] . ( 120 sec) [ -3543.8834] [ 357] [depth= 1] . ( 120 sec) [ -3530.0548] [ 356] [depth= 18] . ( 120 sec) [ -3530.0405] [ 356] [depth= 4] . ( 120 sec) [ -3530.0156] [ 356] [depth= 4] . ( 121 sec) [ -3529.9475] [ 356] [depth= 1] . ( 121 sec) [ -3528.6300] [ 356] [depth= 1] . ( 121 sec) [ -3528.5336] [ 356] [depth= 2] . ( 123 sec) [ -3528.5158] [ 356] [depth= 1] . ( 125 sec) [ -3528.3467] [ 356] [depth= 7] . ( 125 sec) [ -3527.8354] [ 356] [depth= 1] . ( 126 sec) [ -3527.8230] [ 356] [depth= 1] . ( 126 sec) [ -3527.7796] [ 356] [depth= 3] . ( 126 sec) [ -3527.5611] [ 356] [depth= 3] . ( 127 sec) [ -3527.5256] [ 356] [depth= 5] . ( 127 sec) [ -3527.4753] [ 356] [depth= 1] . ( 127 sec) [ -3527.4340] [ 356] [depth= 2] . ( 127 sec) [ -3525.1680] [ 357] [depth= 5] . ( 127 sec) [ -3522.7156] [ 357] [depth= 3] . ( 128 sec) [ -3522.7024] [ 357] [depth= 8] . ( 128 sec) [ -3521.5387] [ 356] [depth= 4] . ( 128 sec) [ -3521.5261] [ 356] [depth= 4] . ( 130 sec) [ -3521.5131] [ 356] [depth= 1] . ( 131 sec) [ -3520.6133] [ 356] [depth= 2] . ( 131 sec) [ -3520.5519] [ 356] [depth= 7] . ( 135 sec) [ -3520.5316] [ 356] [depth= 1] . ( 137 sec) [ -3504.4310] [ 353] [depth= 2] . ( 137 sec) [ -3501.4625] [ 353] [depth= 5] . ( 140 sec) [ -3501.3996] [ 353] [depth= 3] . ( 140 sec) [ -3501.3642] [ 353] [depth= 5] . ( 140 sec) [ -3498.3481] [ 353] [depth= 8] . ( 142 sec) [ -3498.2059] [ 353] [depth= 4] . ( 143 sec) [ -3498.1103] [ 353] [depth= 5] . ( 145 sec) [ -3498.0422] [ 353] [depth= 3] . ( 145 sec) [ -3498.0100] [ 353] [depth= 4] . ( 146 sec) [ -3497.9699] [ 353] [depth= 1] . ( 147 sec) [ -3497.9558] [ 353] [depth= 7] . ( 150 sec) [ -3497.9405] [ 353] [depth= 4] . ( 153 sec) [ -3488.2009] [ 351] [depth= 8] . ( 153 sec) [ -3487.4692] [ 351] [depth= 2] . ( 155 sec) [ -3487.3904] [ 351] [depth= 5] . ( 155 sec) [ -3487.3326] [ 351] [depth= 2] . ( 160 sec) [ -3487.2513] [ 351] [depth= 3] . ( 163 sec) [ -3487.2110] [ 351] [depth= 1] . ( 165 sec) [ -3487.2007] [ 351] [depth= 1] . ( 166 sec) [ -3487.1379] [ 351] [depth= 2] . ( 171 sec) [ -3486.0413] [ 351] [depth= 3] . ( 171 sec) [ -3484.1431] [ 350] [depth= 2] . ( 171 sec) [ -3484.0764] [ 350] [depth= 2] . ( 173 sec) [ -3482.9445] [ 350] [depth= 1] . ( 180 sec) [ -3476.1778] [Branch lengths ] . ( 182 sec) [ -3473.3556] [GTR parameters ] . ( 182 sec) [ -3473.3120] [Alpha ][ 0.260569] . ( 182 sec) [ -3470.0956] [ 346] [depth= 11] . ( 228 sec) [ -3469.5730] [ 345] [depth= 5] . ( 252 sec) [ -3466.5367] [ 344] [depth= 1] . ( 256 sec) [ -3466.3765] [ 344] [depth= 3] . ( 264 sec) [ -3466.2692] [ 344] [depth= 2] . ( 273 sec) [ -3466.2550] [ 344] [depth= 5] . ( 280 sec) [ -3464.7387] [ 343] [depth= 2] . ( 296 sec) [ -3464.6602] [ 344] [depth= 1] . ( 313 sec) [ -3464.6104] [ 344] [depth= 15] . ( 316 sec) [ -3464.5174] [ 344] [depth= 1] . ( 319 sec) [ -3463.5863] [ 343] [depth= 3] . ( 323 sec) [ -3463.5196] [ 343] [depth= 1] . ( 354 sec) [ -3463.4867] [ 343] [depth= 1] . ( 364 sec) [ -3463.2252] [ 343] [depth= 4] . ( 380 sec) [ -3462.4071] [Branch lengths ] . ( 381 sec) [ -3462.1648] [GTR parameters ] . ( 381 sec) [ -3462.1162] [Alpha ][ 0.271659] . ( 427 sec) [ -3461.0697] [ 342] [depth= 1] . ( 431 sec) [ -3460.9583] [ 342] [depth= 1] . ( 444 sec) [ -3460.9458] [ 342] [depth= 2] . ( 478 sec) [ -3460.7497] [ 342] [depth= 4] . ( 585 sec) [ -3460.5473] [Branch lengths ] . ( 587 sec) [ -3460.5378] [GTR parameters ] . ( 587 sec) [ -3460.5374] [Alpha ][ 0.272709] . ( 793 sec) [ -3460.5327] [Branch lengths ] . ( 890 sec) [ -3460.5325] [Branch lengths ] . ( 890 sec) [ -3460.5325] [Topology ] . ( 891 sec) [ -3460.5325] [Topology ] . ( 893 sec) [ -3460.5322] [GTR parameters ] . ( 893 sec) [ -3460.5322] [Alpha ][ 0.272709] . Checking for NNIs, optimizing five branches... . ( 904 sec) [ -3460.5321] [Topology ] . Checking for NNIs, optimizing five branches... . ( 915 sec) [ -3460.5320] [Topology ] . Checking for NNIs, optimizing five branches... . ( 926 sec) [ -3460.5294] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -3460.529417. . [Random start 4/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 2 sec) [ -14167.1804] [GTR parameters ] . ( 2 sec) [ -13914.0056] [Alpha ][ 0.500960] . ( 2 sec) [ -13860.6830] [ 1231] [depth= 11] . ( 2 sec) [ -13524.1806] [ 1220] [depth= 4] . ( 2 sec) [ -13486.1773] [ 1216] [depth= 10] . ( 2 sec) [ -13485.5520] [ 1216] [depth= 1] . ( 2 sec) [ -13449.5766] [ 1212] [depth= 15] . ( 2 sec) [ -13434.1557] [ 1212] [depth= 1] . ( 3 sec) [ -13381.6714] [ 1212] [depth= 4] . ( 3 sec) [ -13377.8185] [ 1212] [depth= 2] . ( 3 sec) [ -13000.2022] [ 1212] [depth= 1] . ( 3 sec) [ -12998.5289] [ 1211] [depth= 7] . ( 3 sec) [ -12990.1598] [ 1211] [depth= 1] . ( 3 sec) [ -12970.2172] [ 1210] [depth= 14] . ( 3 sec) [ -12947.0958] [ 1210] [depth= 3] . ( 3 sec) [ -12935.4612] [ 1210] [depth= 7] . ( 3 sec) [ -12932.2543] [ 1210] [depth= 3] . ( 3 sec) [ -12807.0216] [ 1207] [depth= 2] . ( 3 sec) [ -12797.4180] [ 1207] [depth= 3] . ( 3 sec) [ -12685.6821] [ 1202] [depth= 4] . ( 4 sec) [ -12595.0851] [ 1201] [depth= 2] . ( 4 sec) [ -12541.2566] [ 1201] [depth= 4] . ( 4 sec) [ -12511.3244] [ 1199] [depth= 9] . ( 4 sec) [ -12329.4327] [ 1199] [depth= 8] . ( 4 sec) [ -12291.2466] [ 1199] [depth= 2] . ( 4 sec) [ -12275.8445] [ 1199] [depth= 6] . ( 4 sec) [ -12274.5906] [ 1199] [depth= 2] . ( 4 sec) [ -12120.1850] [ 1198] [depth= 5] . ( 4 sec) [ -12084.5869] [ 1198] [depth= 1] . ( 4 sec) [ -12078.9932] [ 1198] [depth= 6] . ( 4 sec) [ -11991.5434] [ 1198] [depth= 4] . ( 5 sec) [ -11935.9471] [ 1193] [depth= 10] . ( 5 sec) [ -11913.7348] [ 1193] [depth= 1] . ( 5 sec) [ -11867.2358] [ 1188] [depth= 4] . ( 5 sec) [ -11861.2074] [ 1187] [depth= 1] . ( 5 sec) [ -11840.7504] [ 1186] [depth= 26] . ( 5 sec) [ -11833.3683] [ 1186] [depth= 1] . ( 5 sec) [ -11718.2450] [ 1183] [depth= 20] . ( 5 sec) [ -11672.2401] [ 1172] [depth= 26] . ( 5 sec) [ -11547.6285] [ 1170] [depth= 19] . ( 5 sec) [ -11523.4899] [ 1166] [depth= 8] . ( 6 sec) [ -11471.1680] [ 1157] [depth= 19] . ( 6 sec) [ -11406.8612] [ 1147] [depth= 7] . ( 6 sec) [ -11363.8930] [ 1144] [depth= 14] . ( 6 sec) [ -11321.3242] [ 1139] [depth= 12] . ( 6 sec) [ -11280.0162] [ 1133] [depth= 32] . ( 6 sec) [ -11232.4361] [ 1127] [depth= 4] . ( 6 sec) [ -11126.3649] [ 1120] [depth= 26] . ( 6 sec) [ -11120.4972] [ 1120] [depth= 14] . ( 6 sec) [ -11053.1637] [ 1122] [depth= 1] . ( 6 sec) [ -11047.5384] [ 1121] [depth= 6] . ( 7 sec) [ -10930.6151] [ 1106] [depth= 23] . ( 7 sec) [ -10892.3175] [ 1099] [depth= 5] . ( 7 sec) [ -10891.7070] [ 1099] [depth= 1] . ( 7 sec) [ -10835.3873] [ 1099] [depth= 9] . ( 7 sec) [ -10812.5867] [ 1094] [depth= 10] . ( 7 sec) [ -10742.9683] [ 1090] [depth= 11] . ( 7 sec) [ -10721.8135] [ 1084] [depth= 13] . ( 7 sec) [ -10693.1245] [ 1079] [depth= 1] . ( 7 sec) [ -10432.0748] [ 1060] [depth= 13] . ( 7 sec) [ -10424.0371] [ 1059] [depth= 26] . ( 8 sec) [ -10363.9488] [ 1056] [depth= 4] . ( 8 sec) [ -10338.6819] [ 1050] [depth= 6] . ( 8 sec) [ -10056.5470] [ 1050] [depth= 1] . ( 8 sec) [ -9997.4413] [ 1049] [depth= 22] . ( 8 sec) [ -9937.0190] [ 1043] [depth= 19] . ( 8 sec) [ -9842.8195] [ 1031] [depth= 13] . ( 8 sec) [ -9811.1594] [ 1027] [depth= 21] . ( 8 sec) [ -9789.9701] [ 1026] [depth= 2] . ( 8 sec) [ -9789.3229] [ 1026] [depth= 1] . ( 8 sec) [ -9788.3149] [ 1026] [depth= 2] . ( 9 sec) [ -9754.1406] [ 1019] [depth= 13] . ( 9 sec) [ -9747.3447] [ 1019] [depth= 4] . ( 9 sec) [ -9736.7996] [ 1018] [depth= 3] . ( 9 sec) [ -9735.1774] [ 1018] [depth= 2] . ( 9 sec) [ -9691.9653] [ 1013] [depth= 7] . ( 9 sec) [ -9675.2804] [ 1012] [depth= 2] . ( 9 sec) [ -9629.8082] [ 1012] [depth= 2] . ( 9 sec) [ -9629.0368] [ 1012] [depth= 2] . ( 9 sec) [ -9599.6630] [ 1012] [depth= 1] . ( 9 sec) [ -9595.3912] [ 1011] [depth= 1] . ( 10 sec) [ -9591.2296] [ 1009] [depth= 5] . ( 10 sec) [ -9539.0369] [ 1003] [depth= 22] . ( 10 sec) [ -9526.9008] [ 1001] [depth= 19] . ( 10 sec) [ -9525.5650] [ 1001] [depth= 1] . ( 10 sec) [ -9464.3650] [ 994] [depth= 9] . ( 10 sec) [ -9434.3154] [ 988] [depth= 25] . ( 10 sec) [ -9423.8094] [ 985] [depth= 16] . ( 10 sec) [ -9314.1458] [ 980] [depth= 18] . ( 10 sec) [ -9221.8365] [ 959] [depth= 8] . ( 10 sec) [ -9173.4893] [ 959] [depth= 18] . ( 11 sec) [ -9144.0434] [ 959] [depth= 2] . ( 11 sec) [ -9142.8533] [ 958] [depth= 16] . ( 11 sec) [ -9141.6036] [ 957] [depth= 18] . ( 11 sec) [ -9077.8008] [ 957] [depth= 2] . ( 11 sec) [ -9075.9407] [ 956] [depth= 9] . ( 11 sec) [ -9041.9164] [ 947] [depth= 21] . ( 11 sec) [ -9036.6907] [ 947] [depth= 12] . ( 11 sec) [ -9034.6815] [ 947] [depth= 1] . ( 11 sec) [ -9022.8290] [ 944] [depth= 16] . ( 12 sec) [ -9014.0317] [ 941] [depth= 2] . ( 12 sec) [ -8953.2789] [ 941] [depth= 6] . ( 12 sec) [ -8944.5862] [ 939] [depth= 2] . ( 12 sec) [ -8892.3044] [ 931] [depth= 3] . ( 12 sec) [ -8883.3397] [ 931] [depth= 1] . ( 12 sec) [ -8798.0716] [ 929] [depth= 13] . ( 12 sec) [ -8797.7433] [ 929] [depth= 2] . ( 12 sec) [ -8708.9282] [ 908] [depth= 9] . ( 12 sec) [ -8686.5054] [ 906] [depth= 4] . ( 12 sec) [ -8669.9415] [ 906] [depth= 6] . ( 13 sec) [ -8669.7757] [ 906] [depth= 8] . ( 13 sec) [ -8661.4053] [ 906] [depth= 9] . ( 13 sec) [ -8659.2426] [ 906] [depth= 1] . ( 13 sec) [ -8311.1895] [ 905] [depth= 4] . ( 13 sec) [ -8269.2130] [ 905] [depth= 1] . ( 13 sec) [ -8176.4023] [ 898] [depth= 18] . ( 13 sec) [ -8147.8090] [ 893] [depth= 3] . ( 13 sec) [ -8078.9375] [ 878] [depth= 21] . ( 13 sec) [ -7952.7436] [ 873] [depth= 6] . ( 13 sec) [ -7919.4629] [ 875] [depth= 19] . ( 14 sec) [ -7846.8239] [ 870] [depth= 2] . ( 14 sec) [ -7844.9270] [ 870] [depth= 1] . ( 14 sec) [ -7842.7884] [ 870] [depth= 1] . ( 14 sec) [ -7841.1536] [ 868] [depth= 17] . ( 14 sec) [ -7839.8207] [ 868] [depth= 1] . ( 14 sec) [ -7820.8315] [ 859] [depth= 14] . ( 14 sec) [ -7768.5681] [ 859] [depth= 1] . ( 14 sec) [ -7729.8970] [ 850] [depth= 15] . ( 14 sec) [ -7729.1674] [ 850] [depth= 1] . ( 14 sec) [ -7713.9252] [ 847] [depth= 16] . ( 14 sec) [ -7680.3370] [ 845] [depth= 12] . ( 15 sec) [ -7674.9603] [ 847] [depth= 10] . ( 15 sec) [ -7638.8672] [ 842] [depth= 12] . ( 15 sec) [ -7619.8416] [ 839] [depth= 2] . ( 15 sec) [ -7608.5184] [ 836] [depth= 13] . ( 15 sec) [ -7608.0981] [ 835] [depth= 9] . ( 15 sec) [ -7535.0729] [ 819] [depth= 13] . ( 15 sec) [ -7527.6267] [ 816] [depth= 2] . ( 15 sec) [ -7526.3690] [ 816] [depth= 22] . ( 15 sec) [ -7526.0219] [ 815] [depth= 7] . ( 16 sec) [ -7499.8362] [ 810] [depth= 3] . ( 16 sec) [ -7469.4585] [ 810] [depth= 7] . ( 16 sec) [ -7432.2279] [ 806] [depth= 15] . ( 16 sec) [ -7412.4439] [ 803] [depth= 12] . ( 16 sec) [ -7411.7583] [ 803] [depth= 1] . ( 16 sec) [ -7393.5239] [ 801] [depth= 19] . ( 16 sec) [ -7391.2684] [ 801] [depth= 21] . ( 16 sec) [ -7388.0960] [ 801] [depth= 20] . ( 17 sec) [ -7379.4574] [ 796] [depth= 11] . ( 17 sec) [ -7374.9111] [ 796] [depth= 2] . ( 17 sec) [ -7374.8607] [ 796] [depth= 2] . ( 17 sec) [ -7350.3481] [ 791] [depth= 5] . ( 17 sec) [ -7343.4618] [ 791] [depth= 2] . ( 17 sec) [ -7336.0448] [ 789] [depth= 3] . ( 17 sec) [ -7307.5327] [ 784] [depth= 12] . ( 17 sec) [ -7293.8281] [ 782] [depth= 24] . ( 17 sec) [ -7279.7295] [ 780] [depth= 4] . ( 17 sec) [ -7215.6831] [ 779] [depth= 15] . ( 17 sec) [ -7214.4730] [ 779] [depth= 2] . ( 17 sec) [ -7214.3490] [ 779] [depth= 4] . ( 18 sec) [ -7135.3722] [ 778] [depth= 11] . ( 18 sec) [ -7121.1805] [ 777] [depth= 16] . ( 18 sec) [ -7100.8161] [ 773] [depth= 22] . ( 18 sec) [ -7100.7654] [ 773] [depth= 19] . ( 18 sec) [ -7091.4683] [ 773] [depth= 2] . ( 18 sec) [ -7081.2357] [ 771] [depth= 8] . ( 18 sec) [ -7063.2229] [ 769] [depth= 14] . ( 18 sec) [ -7063.2098] [ 769] [depth= 3] . ( 18 sec) [ -7061.2477] [ 770] [depth= 16] . ( 18 sec) [ -7056.9009] [ 770] [depth= 5] . ( 19 sec) [ -7044.8582] [ 770] [depth= 3] . ( 19 sec) [ -7044.7397] [ 770] [depth= 1] . ( 19 sec) [ -7039.9668] [ 770] [depth= 6] . ( 19 sec) [ -7013.6138] [ 768] [depth= 8] . ( 19 sec) [ -7011.6082] [ 768] [depth= 1] . ( 19 sec) [ -6984.7785] [ 763] [depth= 11] . ( 19 sec) [ -6982.0572] [ 763] [depth= 15] . ( 19 sec) [ -6958.9110] [ 760] [depth= 14] . ( 20 sec) [ -6925.7435] [ 753] [depth= 14] . ( 20 sec) [ -6917.5200] [ 753] [depth= 2] . ( 20 sec) [ -6908.6438] [ 752] [depth= 10] . ( 20 sec) [ -6813.7824] [ 752] [depth= 14] . ( 20 sec) [ -6813.4431] [ 752] [depth= 22] . ( 20 sec) [ -6813.3959] [ 752] [depth= 2] . ( 20 sec) [ -6802.4583] [ 752] [depth= 21] . ( 20 sec) [ -6769.8027] [ 752] [depth= 19] . ( 20 sec) [ -6769.7352] [ 752] [depth= 5] . ( 20 sec) [ -6767.0612] [ 752] [depth= 19] . ( 20 sec) [ -6765.7935] [ 752] [depth= 1] . ( 21 sec) [ -6765.4508] [ 752] [depth= 3] . ( 21 sec) [ -6751.3151] [ 749] [depth= 10] . ( 21 sec) [ -6736.2994] [ 749] [depth= 4] . ( 21 sec) [ -6730.3939] [ 749] [depth= 20] . ( 21 sec) [ -6687.9306] [ 747] [depth= 12] . ( 21 sec) [ -6687.6102] [ 747] [depth= 17] . ( 21 sec) [ -6682.5456] [ 746] [depth= 8] . ( 22 sec) [ -6638.5075] [ 738] [depth= 8] . ( 22 sec) [ -6638.0846] [ 738] [depth= 24] . ( 22 sec) [ -6637.3675] [ 738] [depth= 23] . ( 22 sec) [ -6629.2569] [ 738] [depth= 18] . ( 22 sec) [ -6625.6829] [ 737] [depth= 1] . ( 22 sec) [ -6625.6101] [ 737] [depth= 3] . ( 22 sec) [ -6608.1645] [ 730] [depth= 1] . ( 22 sec) [ -6588.2803] [ 727] [depth= 6] . ( 22 sec) [ -6537.9766] [ 719] [depth= 11] . ( 23 sec) [ -6530.0394] [ 718] [depth= 7] . ( 23 sec) [ -6519.4237] [ 718] [depth= 5] . ( 23 sec) [ -6518.4765] [ 718] [depth= 1] . ( 23 sec) [ -6479.0474] [ 715] [depth= 10] . ( 23 sec) [ -6450.2603] [ 715] [depth= 1] . ( 23 sec) [ -6450.1948] [ 715] [depth= 2] . ( 23 sec) [ -6418.2799] [ 707] [depth= 15] . ( 23 sec) [ -6417.6715] [ 707] [depth= 5] . ( 23 sec) [ -6407.7318] [ 707] [depth= 4] . ( 23 sec) [ -6407.4580] [ 707] [depth= 8] . ( 24 sec) [ -6369.7813] [ 707] [depth= 1] . ( 24 sec) [ -6328.8167] [ 702] [depth= 11] . ( 24 sec) [ -6303.6627] [ 698] [depth= 11] . ( 24 sec) [ -6303.1533] [ 698] [depth= 1] . ( 24 sec) [ -6293.2340] [ 697] [depth= 2] . ( 24 sec) [ -6285.6944] [ 696] [depth= 21] . ( 24 sec) [ -6285.6333] [ 696] [depth= 1] . ( 24 sec) [ -6251.3397] [ 690] [depth= 7] . ( 24 sec) [ -6249.3536] [ 690] [depth= 12] . ( 25 sec) [ -6245.1253] [ 690] [depth= 2] . ( 25 sec) [ -6244.2518] [ 690] [depth= 6] . ( 25 sec) [ -6231.2988] [ 693] [depth= 16] . ( 25 sec) [ -6209.8226] [ 692] [depth= 12] . ( 25 sec) [ -6191.1288] [ 692] [depth= 1] . ( 26 sec) [ -6135.1597] [ 692] [depth= 9] . ( 26 sec) [ -6127.7100] [ 692] [depth= 1] . ( 26 sec) [ -6055.2420] [ 687] [depth= 13] . ( 26 sec) [ -6045.9321] [ 685] [depth= 10] . ( 26 sec) [ -5992.2269] [ 680] [depth= 13] . ( 26 sec) [ -5992.1070] [ 680] [depth= 1] . ( 26 sec) [ -5985.8605] [ 678] [depth= 14] . ( 26 sec) [ -5985.4468] [ 678] [depth= 9] . ( 26 sec) [ -5884.4706] [ 673] [depth= 16] . ( 27 sec) [ -5884.3841] [ 673] [depth= 1] . ( 27 sec) [ -5884.3530] [ 673] [depth= 7] . ( 27 sec) [ -5688.1342] [ 670] [depth= 2] . ( 27 sec) [ -5665.6608] [ 668] [depth= 1] . ( 27 sec) [ -5637.1991] [ 661] [depth= 13] . ( 27 sec) [ -5616.9339] [ 658] [depth= 11] . ( 27 sec) [ -5611.2263] [ 660] [depth= 1] . ( 27 sec) [ -5590.4657] [ 656] [depth= 21] . ( 27 sec) [ -5566.0218] [ 652] [depth= 19] . ( 27 sec) [ -5542.4427] [ 651] [depth= 1] . ( 28 sec) [ -5512.5994] [ 649] [depth= 12] . ( 28 sec) [ -5506.6989] [ 649] [depth= 1] . ( 28 sec) [ -5506.6860] [ 649] [depth= 1] . ( 28 sec) [ -5478.2538] [ 648] [depth= 12] . ( 28 sec) [ -5463.8139] [ 648] [depth= 2] . ( 28 sec) [ -5391.6044] [ 646] [depth= 1] . ( 28 sec) [ -5350.9027] [ 642] [depth= 4] . ( 28 sec) [ -5330.1530] [ 640] [depth= 8] . ( 28 sec) [ -5330.1279] [ 640] [depth= 1] . ( 28 sec) [ -5296.5931] [ 635] [depth= 20] . ( 29 sec) [ -5288.4255] [ 618] [depth= 19] . ( 29 sec) [ -5265.9753] [ 613] [depth= 13] . ( 29 sec) [ -5265.1371] [ 613] [depth= 3] . ( 29 sec) [ -5164.0452] [ 616] [depth= 1] . ( 29 sec) [ -5128.5432] [ 614] [depth= 13] . ( 29 sec) [ -5120.3520] [ 613] [depth= 17] . ( 29 sec) [ -5112.9620] [ 611] [depth= 9] . ( 29 sec) [ -5100.5008] [ 609] [depth= 9] . ( 29 sec) [ -5086.1251] [ 608] [depth= 17] . ( 29 sec) [ -5060.6049] [ 602] [depth= 19] . ( 30 sec) [ -5060.4702] [ 602] [depth= 2] . ( 30 sec) [ -4967.4274] [ 580] [depth= 13] . ( 30 sec) [ -4966.9111] [ 580] [depth= 11] . ( 30 sec) [ -4946.1225] [ 577] [depth= 11] . ( 30 sec) [ -4944.7145] [ 577] [depth= 5] . ( 30 sec) [ -4944.2939] [ 577] [depth= 8] . ( 31 sec) [ -4895.4406] [ 578] [depth= 11] . ( 31 sec) [ -4883.2390] [ 582] [depth= 1] . ( 31 sec) [ -4834.6017] [ 572] [depth= 5] . ( 31 sec) [ -4820.9455] [ 571] [depth= 11] . ( 32 sec) [ -4819.7971] [ 571] [depth= 8] . ( 32 sec) [ -4800.7448] [ 568] [depth= 1] . ( 32 sec) [ -4799.6130] [ 568] [depth= 8] . ( 32 sec) [ -4798.4472] [ 566] [depth= 6] . ( 32 sec) [ -4795.9341] [ 566] [depth= 1] . ( 32 sec) [ -4786.2522] [ 564] [depth= 1] . ( 33 sec) [ -4774.8183] [ 563] [depth= 11] . ( 33 sec) [ -4774.7636] [ 563] [depth= 3] . ( 33 sec) [ -4774.6239] [ 563] [depth= 1] . ( 33 sec) [ -4774.1880] [ 564] [depth= 2] . ( 33 sec) [ -4771.7672] [ 563] [depth= 7] . ( 33 sec) [ -4769.6641] [ 563] [depth= 4] . ( 33 sec) [ -4769.3772] [ 563] [depth= 2] . ( 34 sec) [ -4765.8820] [ 563] [depth= 4] . ( 34 sec) [ -4765.3891] [ 563] [depth= 5] . ( 34 sec) [ -4765.2646] [ 563] [depth= 1] . ( 34 sec) [ -4756.2938] [ 561] [depth= 8] . ( 35 sec) [ -4755.7544] [ 561] [depth= 3] . ( 37 sec) [ -4734.9269] [ 557] [depth= 19] . ( 37 sec) [ -4732.3467] [ 546] [depth= 1] . ( 37 sec) [ -4683.1178] [ 536] [depth= 23] . ( 37 sec) [ -4677.1290] [ 532] [depth= 10] . ( 37 sec) [ -4656.1967] [ 530] [depth= 11] . ( 38 sec) [ -4654.1449] [ 530] [depth= 2] . ( 38 sec) [ -4652.9226] [ 530] [depth= 1] . ( 38 sec) [ -4648.2056] [ 530] [depth= 4] . ( 38 sec) [ -4615.5316] [ 529] [depth= 13] . ( 38 sec) [ -4591.8235] [ 536] [depth= 1] . ( 38 sec) [ -4575.7838] [ 529] [depth= 1] . ( 38 sec) [ -4571.8059] [ 528] [depth= 2] . ( 38 sec) [ -4568.3502] [ 526] [depth= 1] . ( 38 sec) [ -4567.4597] [ 526] [depth= 12] . ( 39 sec) [ -4567.3868] [ 526] [depth= 1] . ( 39 sec) [ -4536.6408] [ 521] [depth= 11] . ( 39 sec) [ -4528.5506] [ 520] [depth= 16] . ( 40 sec) [ -4517.4150] [ 517] [depth= 1] . ( 40 sec) [ -4511.4401] [ 517] [depth= 10] . ( 40 sec) [ -4511.3636] [ 517] [depth= 2] . ( 40 sec) [ -4502.4907] [ 516] [depth= 16] . ( 40 sec) [ -4500.3980] [ 515] [depth= 1] . ( 40 sec) [ -4495.8575] [ 514] [depth= 2] . ( 40 sec) [ -4445.7124] [ 503] [depth= 13] . ( 41 sec) [ -4445.4820] [ 503] [depth= 1] . ( 42 sec) [ -4394.0238] [ 502] [depth= 14] . ( 42 sec) [ -4393.2754] [ 502] [depth= 1] . ( 42 sec) [ -4390.2315] [ 502] [depth= 13] . ( 42 sec) [ -4390.0624] [ 502] [depth= 1] . ( 42 sec) [ -4389.9813] [ 502] [depth= 3] . ( 43 sec) [ -4389.4465] [ 502] [depth= 1] . ( 43 sec) [ -4385.1682] [ 502] [depth= 5] . ( 43 sec) [ -4368.6230] [ 497] [depth= 10] . ( 43 sec) [ -4346.3282] [ 475] [depth= 8] . ( 43 sec) [ -4345.7731] [ 475] [depth= 11] . ( 43 sec) [ -4258.5624] [ 474] [depth= 4] . ( 43 sec) [ -4258.5463] [ 474] [depth= 2] . ( 43 sec) [ -4258.2637] [ 474] [depth= 6] . ( 44 sec) [ -4255.1973] [ 473] [depth= 2] . ( 44 sec) [ -4251.2008] [ 472] [depth= 2] . ( 44 sec) [ -4250.9423] [ 472] [depth= 5] . ( 46 sec) [ -4250.4209] [ 472] [depth= 9] . ( 46 sec) [ -4248.4079] [ 457] [depth= 2] . ( 46 sec) [ -4241.0879] [ 456] [depth= 9] . ( 46 sec) [ -4240.4031] [ 456] [depth= 3] . ( 47 sec) [ -4230.2678] [ 455] [depth= 10] . ( 47 sec) [ -4230.0633] [ 454] [depth= 2] . ( 47 sec) [ -4224.6034] [ 452] [depth= 7] . ( 48 sec) [ -4142.9057] [ 440] [depth= 11] . ( 48 sec) [ -4142.8172] [ 440] [depth= 4] . ( 49 sec) [ -4124.0558] [ 438] [depth= 10] . ( 50 sec) [ -4070.2045] [Branch lengths ] . ( 52 sec) [ -3948.1887] [GTR parameters ] . ( 52 sec) [ -3913.6974] [Alpha ][ 0.250961] . ( 52 sec) [ -3911.2760] [ 432] [depth= 2] . ( 53 sec) [ -3896.4814] [ 433] [depth= 2] . ( 53 sec) [ -3883.9966] [ 430] [depth= 16] . ( 55 sec) [ -3883.9441] [ 430] [depth= 2] . ( 55 sec) [ -3883.9095] [ 430] [depth= 13] . ( 58 sec) [ -3874.9536] [ 429] [depth= 8] . ( 58 sec) [ -3874.9394] [ 429] [depth= 4] . ( 58 sec) [ -3864.2778] [ 427] [depth= 10] . ( 59 sec) [ -3864.1878] [ 427] [depth= 3] . ( 59 sec) [ -3862.4157] [ 426] [depth= 7] . ( 60 sec) [ -3860.6357] [ 419] [depth= 8] . ( 60 sec) [ -3859.8192] [ 419] [depth= 1] . ( 60 sec) [ -3859.7989] [ 419] [depth= 3] . ( 61 sec) [ -3859.0971] [ 418] [depth= 10] . ( 61 sec) [ -3854.3540] [ 417] [depth= 16] . ( 61 sec) [ -3852.0338] [ 418] [depth= 5] . ( 62 sec) [ -3847.0794] [ 417] [depth= 2] . ( 62 sec) [ -3846.6293] [ 417] [depth= 2] . ( 63 sec) [ -3846.6124] [ 417] [depth= 2] . ( 63 sec) [ -3840.7577] [ 415] [depth= 6] . ( 63 sec) [ -3840.7472] [ 415] [depth= 3] . ( 64 sec) [ -3840.3844] [ 415] [depth= 3] . ( 64 sec) [ -3832.2877] [ 414] [depth= 8] . ( 64 sec) [ -3829.4091] [ 414] [depth= 1] . ( 64 sec) [ -3829.3069] [ 414] [depth= 3] . ( 65 sec) [ -3829.2905] [ 414] [depth= 4] . ( 65 sec) [ -3829.2784] [ 414] [depth= 3] . ( 67 sec) [ -3829.2175] [ 414] [depth= 6] . ( 67 sec) [ -3823.0105] [ 410] [depth= 8] . ( 67 sec) [ -3821.6564] [ 410] [depth= 1] . ( 67 sec) [ -3821.5895] [ 410] [depth= 6] . ( 68 sec) [ -3817.6311] [ 410] [depth= 1] . ( 68 sec) [ -3817.6182] [ 410] [depth= 2] . ( 68 sec) [ -3808.2441] [ 411] [depth= 7] . ( 68 sec) [ -3808.1900] [ 411] [depth= 2] . ( 69 sec) [ -3806.5992] [ 411] [depth= 3] . ( 69 sec) [ -3800.5842] [ 410] [depth= 3] . ( 69 sec) [ -3797.6125] [ 410] [depth= 8] . ( 69 sec) [ -3797.4323] [ 410] [depth= 2] . ( 69 sec) [ -3797.1924] [ 410] [depth= 10] . ( 70 sec) [ -3797.0580] [ 410] [depth= 6] . ( 70 sec) [ -3796.9899] [ 410] [depth= 1] . ( 71 sec) [ -3795.3585] [ 408] [depth= 3] . ( 71 sec) [ -3794.2228] [ 408] [depth= 3] . ( 71 sec) [ -3784.3459] [ 408] [depth= 1] . ( 71 sec) [ -3773.7443] [ 408] [depth= 4] . ( 72 sec) [ -3768.8268] [ 407] [depth= 3] . ( 72 sec) [ -3768.7890] [ 407] [depth= 10] . ( 72 sec) [ -3767.0744] [ 407] [depth= 8] . ( 72 sec) [ -3763.6458] [ 406] [depth= 2] . ( 75 sec) [ -3763.5860] [ 406] [depth= 3] . ( 75 sec) [ -3763.4155] [ 406] [depth= 2] . ( 77 sec) [ -3763.3946] [ 406] [depth= 3] . ( 77 sec) [ -3763.3828] [ 406] [depth= 1] . ( 79 sec) [ -3758.9686] [ 405] [depth= 8] . ( 79 sec) [ -3755.0961] [ 404] [depth= 12] . ( 81 sec) [ -3753.0519] [ 409] [depth= 7] . ( 81 sec) [ -3747.4526] [ 410] [depth= 3] . ( 81 sec) [ -3743.2749] [ 400] [depth= 3] . ( 81 sec) [ -3739.2703] [ 399] [depth= 1] . ( 81 sec) [ -3735.8892] [ 398] [depth= 1] . ( 81 sec) [ -3734.8044] [ 398] [depth= 1] . ( 82 sec) [ -3734.7369] [ 398] [depth= 3] . ( 82 sec) [ -3734.6077] [ 398] [depth= 4] . ( 82 sec) [ -3734.1072] [ 398] [depth= 4] . ( 82 sec) [ -3733.9852] [ 398] [depth= 2] . ( 83 sec) [ -3733.9709] [ 398] [depth= 4] . ( 83 sec) [ -3732.4958] [ 398] [depth= 3] . ( 85 sec) [ -3732.4791] [ 398] [depth= 2] . ( 86 sec) [ -3732.4493] [ 398] [depth= 1] . ( 86 sec) [ -3665.8288] [ 379] [depth= 24] . ( 86 sec) [ -3665.7559] [ 379] [depth= 17] . ( 87 sec) [ -3665.6240] [ 379] [depth= 7] . ( 89 sec) [ -3663.6821] [ 379] [depth= 9] . ( 90 sec) [ -3663.6624] [ 379] [depth= 2] . ( 91 sec) [ -3663.6374] [ 379] [depth= 8] . ( 92 sec) [ -3645.1487] [ 375] [depth= 7] . ( 95 sec) [ -3631.7216] [ 373] [depth= 5] . ( 95 sec) [ -3631.6350] [ 373] [depth= 1] . ( 96 sec) [ -3631.0903] [ 373] [depth= 5] . ( 97 sec) [ -3613.0844] [ 369] [depth= 9] . ( 97 sec) [ -3612.9917] [ 369] [depth= 10] . ( 100 sec) [ -3601.6405] [ 365] [depth= 1] . ( 100 sec) [ -3600.0257] [ 370] [depth= 6] . ( 100 sec) [ -3599.9851] [ 370] [depth= 7] . ( 100 sec) [ -3599.7291] [ 370] [depth= 1] . ( 101 sec) [ -3599.2009] [ 370] [depth= 2] . ( 101 sec) [ -3599.1687] [ 370] [depth= 3] . ( 102 sec) [ -3599.0741] [ 370] [depth= 9] . ( 103 sec) [ -3598.4068] [ 370] [depth= 6] . ( 103 sec) [ -3597.4931] [ 370] [depth= 6] . ( 105 sec) [ -3597.4206] [ 370] [depth= 6] . ( 105 sec) [ -3597.3995] [ 370] [depth= 2] . ( 105 sec) [ -3597.3348] [ 370] [depth= 4] . ( 108 sec) [ -3597.3089] [ 370] [depth= 6] . ( 108 sec) [ -3580.9158] [ 366] [depth= 1] . ( 108 sec) [ -3576.1003] [ 365] [depth= 7] . ( 109 sec) [ -3574.4063] [ 364] [depth= 4] . ( 110 sec) [ -3574.3933] [ 364] [depth= 2] . ( 110 sec) [ -3571.7227] [ 364] [depth= 6] . ( 111 sec) [ -3571.6476] [ 364] [depth= 1] . ( 111 sec) [ -3570.9340] [ 363] [depth= 4] . ( 115 sec) [ -3570.9235] [ 363] [depth= 8] . ( 115 sec) [ -3563.6206] [ 363] [depth= 3] . ( 115 sec) [ -3563.5424] [ 363] [depth= 1] . ( 115 sec) [ -3562.0971] [ 364] [depth= 7] . ( 115 sec) [ -3562.0842] [ 364] [depth= 2] . ( 116 sec) [ -3561.9476] [ 364] [depth= 2] . ( 116 sec) [ -3558.4657] [ 363] [depth= 3] . ( 117 sec) [ -3558.2307] [ 363] [depth= 1] . ( 117 sec) [ -3558.1137] [ 362] [depth= 3] . ( 119 sec) [ -3558.0659] [ 362] [depth= 2] . ( 120 sec) [ -3534.4600] [ 358] [depth= 6] . ( 120 sec) [ -3534.3942] [ 358] [depth= 1] . ( 120 sec) [ -3534.2956] [ 358] [depth= 2] . ( 121 sec) [ -3534.0366] [ 358] [depth= 1] . ( 121 sec) [ -3533.8797] [ 358] [depth= 1] . ( 122 sec) [ -3533.7740] [ 358] [depth= 5] . ( 123 sec) [ -3533.7190] [ 358] [depth= 2] . ( 123 sec) [ -3533.7068] [ 358] [depth= 2] . ( 124 sec) [ -3533.6871] [ 358] [depth= 1] . ( 124 sec) [ -3533.6508] [ 358] [depth= 1] . ( 124 sec) [ -3533.5923] [ 358] [depth= 1] . ( 124 sec) [ -3533.5243] [ 358] [depth= 3] . ( 124 sec) [ -3530.4318] [ 357] [depth= 5] . ( 124 sec) [ -3527.3106] [ 356] [depth= 1] . ( 125 sec) [ -3527.1786] [ 356] [depth= 1] . ( 129 sec) [ -3527.0404] [ 356] [depth= 1] . ( 131 sec) [ -3522.2353] [ 356] [depth= 1] . ( 132 sec) [ -3522.2154] [ 356] [depth= 4] . ( 133 sec) [ -3521.5864] [ 356] [depth= 11] . ( 133 sec) [ -3521.5647] [ 356] [depth= 3] . ( 133 sec) [ -3521.5050] [ 356] [depth= 2] . ( 133 sec) [ -3521.4184] [ 356] [depth= 4] . ( 134 sec) [ -3521.3981] [ 356] [depth= 3] . ( 134 sec) [ -3521.3819] [ 356] [depth= 1] . ( 134 sec) [ -3520.4312] [ 356] [depth= 2] . ( 135 sec) [ -3520.3109] [ 356] [depth= 1] . ( 135 sec) [ -3519.9709] [ 356] [depth= 1] . ( 136 sec) [ -3518.4775] [ 355] [depth= 7] . ( 136 sec) [ -3518.3834] [ 355] [depth= 4] . ( 140 sec) [ -3518.3713] [ 355] [depth= 1] . ( 141 sec) [ -3518.3586] [ 355] [depth= 1] . ( 141 sec) [ -3518.3238] [ 355] [depth= 2] . ( 142 sec) [ -3518.3111] [ 355] [depth= 1] . ( 143 sec) [ -3518.2742] [ 355] [depth= 2] . ( 144 sec) [ -3514.6870] [ 354] [depth= 7] . ( 144 sec) [ -3513.0185] [ 354] [depth= 9] . ( 145 sec) [ -3511.8165] [ 354] [depth= 1] . ( 145 sec) [ -3511.7849] [ 354] [depth= 4] . ( 147 sec) [ -3511.6153] [ 354] [depth= 1] . ( 151 sec) [ -3511.5914] [ 354] [depth= 1] . ( 151 sec) [ -3511.5766] [ 354] [depth= 2] . ( 151 sec) [ -3511.5655] [ 354] [depth= 1] . ( 154 sec) [ -3511.5540] [ 354] [depth= 4] . ( 155 sec) [ -3511.5428] [ 354] [depth= 1] . ( 155 sec) [ -3511.4938] [ 354] [depth= 2] . ( 155 sec) [ -3511.4801] [ 354] [depth= 6] . ( 156 sec) [ -3511.3963] [ 354] [depth= 1] . ( 157 sec) [ -3510.3961] [ 354] [depth= 3] . ( 157 sec) [ -3510.3590] [ 354] [depth= 1] . ( 161 sec) [ -3510.3449] [ 354] [depth= 2] . ( 162 sec) [ -3510.2766] [ 354] [depth= 1] . ( 162 sec) [ -3510.2648] [ 354] [depth= 3] . ( 171 sec) [ -3506.5809] [Branch lengths ] . ( 172 sec) [ -3504.4454] [GTR parameters ] . ( 172 sec) [ -3504.4427] [Alpha ][ 0.253349] . ( 173 sec) [ -3498.0272] [ 347] [depth= 5] . ( 173 sec) [ -3496.9696] [ 346] [depth= 1] . ( 176 sec) [ -3495.0931] [ 346] [depth= 4] . ( 182 sec) [ -3494.8139] [ 346] [depth= 2] . ( 189 sec) [ -3489.9732] [ 345] [depth= 3] . ( 189 sec) [ -3487.1319] [ 345] [depth= 3] . ( 191 sec) [ -3487.0539] [ 345] [depth= 3] . ( 191 sec) [ -3481.7871] [ 344] [depth= 6] . ( 192 sec) [ -3481.7286] [ 344] [depth= 1] . ( 205 sec) [ -3481.6834] [ 344] [depth= 1] . ( 205 sec) [ -3481.6724] [ 344] [depth= 1] . ( 206 sec) [ -3481.2611] [ 344] [depth= 1] . ( 207 sec) [ -3481.2332] [ 344] [depth= 1] . ( 213 sec) [ -3481.1974] [ 344] [depth= 2] . ( 214 sec) [ -3481.1362] [ 344] [depth= 3] . ( 214 sec) [ -3481.0924] [ 344] [depth= 2] . ( 214 sec) [ -3481.0445] [ 344] [depth= 3] . ( 215 sec) [ -3480.9122] [ 344] [depth= 4] . ( 216 sec) [ -3474.8181] [ 343] [depth= 5] . ( 218 sec) [ -3474.7453] [ 343] [depth= 2] . ( 219 sec) [ -3474.7328] [ 343] [depth= 1] . ( 221 sec) [ -3474.6331] [ 343] [depth= 1] . ( 225 sec) [ -3474.6032] [ 343] [depth= 3] . ( 230 sec) [ -3474.5809] [ 343] [depth= 2] . ( 230 sec) [ -3474.5426] [ 343] [depth= 5] . ( 231 sec) [ -3474.3843] [ 343] [depth= 7] . ( 232 sec) [ -3474.3687] [ 343] [depth= 8] . ( 235 sec) [ -3474.3176] [ 343] [depth= 6] . ( 240 sec) [ -3474.2626] [ 343] [depth= 1] . ( 246 sec) [ -3474.1921] [ 343] [depth= 10] . ( 265 sec) [ -3474.1810] [ 343] [depth= 5] . ( 268 sec) [ -3474.1373] [ 343] [depth= 7] . ( 268 sec) [ -3473.9390] [ 343] [depth= 3] . ( 270 sec) [ -3473.7438] [ 343] [depth= 2] . ( 279 sec) [ -3473.6949] [ 343] [depth= 1] . ( 285 sec) [ -3473.6680] [ 343] [depth= 3] . ( 285 sec) [ -3473.0011] [ 343] [depth= 1] . ( 297 sec) [ -3472.9893] [ 344] [depth= 9] . ( 302 sec) [ -3472.9761] [ 344] [depth= 1] . ( 307 sec) [ -3472.8867] [ 344] [depth= 3] . ( 309 sec) [ -3472.7788] [ 344] [depth= 1] . ( 309 sec) [ -3472.7466] [ 344] [depth= 2] . ( 309 sec) [ -3472.7343] [ 344] [depth= 3] . ( 318 sec) [ -3472.7197] [ 344] [depth= 1] . ( 332 sec) [ -3472.7078] [ 344] [depth= 2] . ( 333 sec) [ -3472.6062] [ 344] [depth= 1] . ( 336 sec) [ -3472.0618] [ 344] [depth= 8] . ( 338 sec) [ -3472.0229] [ 344] [depth= 3] . ( 339 sec) [ -3471.9689] [ 344] [depth= 2] . ( 340 sec) [ -3471.8402] [ 344] [depth= 2] . ( 342 sec) [ -3471.8288] [ 344] [depth= 4] . ( 344 sec) [ -3469.2804] [Branch lengths ] . ( 345 sec) [ -3469.2242] [GTR parameters ] . ( 345 sec) [ -3469.1030] [Alpha ][ 0.270224] . ( 346 sec) [ -3467.7008] [ 345] [depth= 7] . ( 354 sec) [ -3467.6235] [ 345] [depth= 4] . ( 354 sec) [ -3467.5501] [ 345] [depth= 3] . ( 357 sec) [ -3467.4914] [ 345] [depth= 4] . ( 382 sec) [ -3467.4527] [ 345] [depth= 1] . ( 404 sec) [ -3465.8887] [ 344] [depth= 7] . ( 407 sec) [ -3465.8649] [ 344] [depth= 3] . ( 413 sec) [ -3465.7309] [ 344] [depth= 2] . ( 415 sec) [ -3465.6907] [ 344] [depth= 2] . ( 416 sec) [ -3465.6786] [ 344] [depth= 6] . ( 442 sec) [ -3465.6592] [ 344] [depth= 5] . ( 450 sec) [ -3465.6436] [ 344] [depth= 3] . ( 466 sec) [ -3465.6242] [ 344] [depth= 1] . ( 527 sec) [ -3465.5616] [ 344] [depth= 3] . ( 532 sec) [ -3463.4268] [ 344] [depth= 9] . ( 544 sec) [ -3462.5086] [Branch lengths ] . ( 546 sec) [ -3462.4815] [GTR parameters ] . ( 546 sec) [ -3462.4813] [Alpha ][ 0.269559] . ( 659 sec) [ -3462.4579] [ 344] [depth= 4] . ( 753 sec) [ -3462.4245] [Branch lengths ] . ( 753 sec) [ -3462.4245] [GTR parameters ] . ( 753 sec) [ -3462.4245] [Alpha ][ 0.269559] . ( 767 sec) [ -3462.4110] [ 344] [depth= 1] . ( 769 sec) [ -3462.2593] [ 344] [depth= 1] . ( 774 sec) [ -3462.2109] [ 344] [depth= 1] . ( 802 sec) [ -3462.1439] [ 344] [depth= 5] . ( 803 sec) [ -3462.1268] [ 344] [depth= 1] . ( 845 sec) [ -3462.1134] [ 344] [depth= 1] . ( 849 sec) [ -3461.2258] [Branch lengths ] . ( 850 sec) [ -3461.2258] [GTR parameters ] . ( 850 sec) [ -3461.2258] [Alpha ][ 0.269559] . ( 946 sec) [ -3461.1179] [Branch lengths ] . ( 946 sec) [ -3461.1179] [Topology ] . ( 948 sec) [ -3461.1178] [Topology ] . ( 948 sec) [ -3461.1178] [GTR parameters ] . ( 949 sec) [ -3461.1178] [Alpha ][ 0.269559] . Checking for NNIs, optimizing five branches... . ( 960 sec) [ -3461.1177] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -3461.117698. . [Random start 5/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 3 sec) [ -13347.5462] [GTR parameters ] . ( 3 sec) [ -13105.5693] [Alpha ][ 0.500960] . ( 3 sec) [ -13060.7819] [ 1211] [depth= 10] . ( 3 sec) [ -12919.9763] [ 1200] [depth= 12] . ( 4 sec) [ -12778.0009] [ 1199] [depth= 5] . ( 4 sec) [ -12736.6537] [ 1193] [depth= 1] . ( 4 sec) [ -12638.3195] [ 1190] [depth= 6] . ( 4 sec) [ -12544.1502] [ 1189] [depth= 1] . ( 4 sec) [ -12540.3007] [ 1189] [depth= 3] . ( 4 sec) [ -12535.9162] [ 1189] [depth= 8] . ( 4 sec) [ -12510.7627] [ 1189] [depth= 2] . ( 4 sec) [ -12478.9091] [ 1189] [depth= 2] . ( 4 sec) [ -12478.4510] [ 1189] [depth= 3] . ( 4 sec) [ -12458.7896] [ 1189] [depth= 5] . ( 4 sec) [ -12453.1948] [ 1189] [depth= 3] . ( 4 sec) [ -12367.7583] [ 1189] [depth= 4] . ( 5 sec) [ -12323.9320] [ 1189] [depth= 1] . ( 5 sec) [ -12253.2370] [ 1186] [depth= 13] . ( 5 sec) [ -12133.2654] [ 1186] [depth= 2] . ( 5 sec) [ -12106.4377] [ 1184] [depth= 20] . ( 5 sec) [ -12087.0816] [ 1184] [depth= 19] . ( 5 sec) [ -12077.4986] [ 1184] [depth= 1] . ( 5 sec) [ -12024.2412] [ 1184] [depth= 3] . ( 5 sec) [ -11811.0112] [ 1167] [depth= 16] . ( 5 sec) [ -11802.0729] [ 1166] [depth= 2] . ( 5 sec) [ -11763.4168] [ 1161] [depth= 2] . ( 5 sec) [ -11758.4333] [ 1161] [depth= 1] . ( 6 sec) [ -11719.7598] [ 1159] [depth= 18] . ( 6 sec) [ -11473.9228] [ 1139] [depth= 24] . ( 6 sec) [ -11378.8366] [ 1139] [depth= 28] . ( 6 sec) [ -11297.7482] [ 1125] [depth= 24] . ( 6 sec) [ -11237.0534] [ 1122] [depth= 1] . ( 6 sec) [ -11231.0651] [ 1122] [depth= 26] . ( 6 sec) [ -11229.9454] [ 1122] [depth= 6] . ( 6 sec) [ -11205.3578] [ 1117] [depth= 10] . ( 6 sec) [ -11088.7994] [ 1106] [depth= 13] . ( 7 sec) [ -10999.6522] [ 1098] [depth= 6] . ( 7 sec) [ -10985.1904] [ 1094] [depth= 4] . ( 7 sec) [ -10940.7765] [ 1087] [depth= 13] . ( 7 sec) [ -10907.9020] [ 1084] [depth= 11] . ( 7 sec) [ -10873.6731] [ 1080] [depth= 13] . ( 7 sec) [ -10832.4646] [ 1078] [depth= 3] . ( 7 sec) [ -10807.8679] [ 1078] [depth= 2] . ( 7 sec) [ -10788.3718] [ 1074] [depth= 19] . ( 7 sec) [ -10699.7499] [ 1074] [depth= 1] . ( 7 sec) [ -10603.3302] [ 1068] [depth= 15] . ( 8 sec) [ -10548.1391] [ 1068] [depth= 3] . ( 8 sec) [ -10510.5787] [ 1067] [depth= 2] . ( 8 sec) [ -10471.9081] [ 1067] [depth= 1] . ( 8 sec) [ -10471.5453] [ 1067] [depth= 1] . ( 8 sec) [ -10318.8667] [ 1067] [depth= 1] . ( 8 sec) [ -10305.3074] [ 1067] [depth= 6] . ( 8 sec) [ -10256.9829] [ 1061] [depth= 17] . ( 8 sec) [ -10225.4240] [ 1058] [depth= 15] . ( 8 sec) [ -10186.0860] [ 1054] [depth= 14] . ( 8 sec) [ -10147.9347] [ 1050] [depth= 15] . ( 8 sec) [ -10058.4914] [ 1028] [depth= 17] . ( 9 sec) [ -10047.3939] [ 1027] [depth= 15] . ( 9 sec) [ -10021.0940] [ 1025] [depth= 3] . ( 9 sec) [ -9988.2330] [ 1021] [depth= 14] . ( 9 sec) [ -9945.5805] [ 1020] [depth= 19] . ( 9 sec) [ -9914.7292] [ 1020] [depth= 25] . ( 9 sec) [ -9843.0168] [ 1020] [depth= 1] . ( 9 sec) [ -9793.6765] [ 1020] [depth= 28] . ( 9 sec) [ -9689.5809] [ 1018] [depth= 26] . ( 9 sec) [ -9634.3982] [ 1017] [depth= 27] . ( 10 sec) [ -9453.2593] [ 996] [depth= 25] . ( 10 sec) [ -9409.5884] [ 996] [depth= 17] . ( 10 sec) [ -9311.0013] [ 974] [depth= 17] . ( 10 sec) [ -9210.7921] [ 947] [depth= 15] . ( 10 sec) [ -9190.9150] [ 943] [depth= 24] . ( 10 sec) [ -9166.9968] [ 942] [depth= 1] . ( 10 sec) [ -9151.6891] [ 940] [depth= 14] . ( 10 sec) [ -9143.0224] [ 939] [depth= 27] . ( 10 sec) [ -9099.5685] [ 939] [depth= 17] . ( 10 sec) [ -9088.8440] [ 938] [depth= 8] . ( 11 sec) [ -9067.0814] [ 935] [depth= 17] . ( 11 sec) [ -8986.7835] [ 934] [depth= 11] . ( 11 sec) [ -8927.6735] [ 934] [depth= 3] . ( 11 sec) [ -8908.7945] [ 934] [depth= 1] . ( 11 sec) [ -8894.6295] [ 934] [depth= 1] . ( 11 sec) [ -8662.4659] [ 933] [depth= 2] . ( 11 sec) [ -8660.9817] [ 933] [depth= 1] . ( 11 sec) [ -8632.8847] [ 927] [depth= 4] . ( 11 sec) [ -8611.0720] [ 926] [depth= 2] . ( 11 sec) [ -8592.3635] [ 923] [depth= 13] . ( 11 sec) [ -8521.7725] [ 917] [depth= 10] . ( 12 sec) [ -8509.4165] [ 915] [depth= 2] . ( 12 sec) [ -8501.5723] [ 912] [depth= 5] . ( 12 sec) [ -8436.2294] [ 899] [depth= 1] . ( 12 sec) [ -8419.3898] [ 898] [depth= 10] . ( 12 sec) [ -8352.7940] [ 893] [depth= 7] . ( 12 sec) [ -8350.6620] [ 893] [depth= 1] . ( 12 sec) [ -8334.4251] [ 892] [depth= 12] . ( 12 sec) [ -8334.0518] [ 892] [depth= 9] . ( 12 sec) [ -8255.0103] [ 880] [depth= 9] . ( 13 sec) [ -8240.8934] [ 877] [depth= 14] . ( 13 sec) [ -8237.3355] [ 876] [depth= 19] . ( 13 sec) [ -8220.7250] [ 874] [depth= 9] . ( 13 sec) [ -8211.3169] [ 876] [depth= 3] . ( 13 sec) [ -8198.9356] [ 872] [depth= 17] . ( 13 sec) [ -8197.4569] [ 872] [depth= 28] . ( 13 sec) [ -8194.7173] [ 872] [depth= 2] . ( 13 sec) [ -8127.4436] [ 869] [depth= 12] . ( 13 sec) [ -8072.9395] [ 863] [depth= 9] . ( 13 sec) [ -7922.1810] [ 845] [depth= 17] . ( 14 sec) [ -7911.6794] [ 843] [depth= 12] . ( 14 sec) [ -7905.1082] [ 842] [depth= 20] . ( 14 sec) [ -7858.7012] [ 832] [depth= 20] . ( 14 sec) [ -7791.9709] [ 826] [depth= 6] . ( 14 sec) [ -7784.6527] [ 825] [depth= 9] . ( 14 sec) [ -7778.5307] [ 825] [depth= 2] . ( 14 sec) [ -7776.6692] [ 824] [depth= 1] . ( 14 sec) [ -7775.9421] [ 824] [depth= 1] . ( 14 sec) [ -7770.3479] [ 823] [depth= 9] . ( 14 sec) [ -7640.1435] [ 804] [depth= 14] . ( 15 sec) [ -7620.1061] [ 799] [depth= 15] . ( 15 sec) [ -7592.3267] [ 792] [depth= 10] . ( 15 sec) [ -7590.3429] [ 792] [depth= 8] . ( 15 sec) [ -7583.2828] [ 791] [depth= 9] . ( 15 sec) [ -7561.7658] [ 787] [depth= 14] . ( 15 sec) [ -7551.7784] [ 787] [depth= 2] . ( 15 sec) [ -7523.6056] [ 781] [depth= 21] . ( 16 sec) [ -7519.6469] [ 781] [depth= 1] . ( 16 sec) [ -7492.1707] [ 779] [depth= 13] . ( 16 sec) [ -7486.3910] [ 778] [depth= 8] . ( 16 sec) [ -7458.1887] [ 772] [depth= 1] . ( 16 sec) [ -7434.2291] [ 769] [depth= 13] . ( 16 sec) [ -7421.7813] [ 765] [depth= 11] . ( 16 sec) [ -7419.8174] [ 765] [depth= 2] . ( 16 sec) [ -7419.0070] [ 765] [depth= 1] . ( 16 sec) [ -7015.5536] [ 764] [depth= 18] . ( 16 sec) [ -7015.4349] [ 764] [depth= 1] . ( 17 sec) [ -7011.0167] [ 763] [depth= 19] . ( 17 sec) [ -7010.9952] [ 763] [depth= 4] . ( 17 sec) [ -6998.7154] [ 762] [depth= 6] . ( 17 sec) [ -6991.8211] [ 762] [depth= 8] . ( 17 sec) [ -6990.3643] [ 762] [depth= 15] . ( 17 sec) [ -6972.4270] [ 760] [depth= 10] . ( 17 sec) [ -6969.9688] [ 760] [depth= 2] . ( 17 sec) [ -6913.1505] [ 758] [depth= 15] . ( 17 sec) [ -6911.9363] [ 757] [depth= 1] . ( 18 sec) [ -6899.9120] [ 756] [depth= 3] . ( 18 sec) [ -6884.2429] [ 754] [depth= 11] . ( 18 sec) [ -6876.1021] [ 754] [depth= 3] . ( 18 sec) [ -6872.4113] [ 754] [depth= 1] . ( 18 sec) [ -6835.5723] [ 754] [depth= 2] . ( 18 sec) [ -6822.8016] [ 754] [depth= 7] . ( 18 sec) [ -6818.1510] [ 754] [depth= 1] . ( 18 sec) [ -6733.6340] [ 750] [depth= 8] . ( 18 sec) [ -6698.6475] [ 747] [depth= 1] . ( 18 sec) [ -6673.6209] [ 747] [depth= 2] . ( 19 sec) [ -6672.1108] [ 746] [depth= 12] . ( 19 sec) [ -6664.4940] [ 746] [depth= 1] . ( 19 sec) [ -6615.4237] [ 741] [depth= 13] . ( 19 sec) [ -6573.8514] [ 734] [depth= 13] . ( 19 sec) [ -6558.3834] [ 734] [depth= 6] . ( 19 sec) [ -6556.6742] [ 734] [depth= 14] . ( 19 sec) [ -6552.7607] [ 736] [depth= 2] . ( 19 sec) [ -6543.1644] [ 733] [depth= 6] . ( 19 sec) [ -6542.8158] [ 730] [depth= 19] . ( 20 sec) [ -6533.0168] [ 728] [depth= 15] . ( 20 sec) [ -6529.5397] [ 728] [depth= 1] . ( 20 sec) [ -6524.5924] [ 727] [depth= 22] . ( 20 sec) [ -6409.7202] [ 734] [depth= 21] . ( 20 sec) [ -6366.2855] [ 734] [depth= 3] . ( 20 sec) [ -6349.2562] [ 734] [depth= 1] . ( 20 sec) [ -6344.4785] [ 733] [depth= 1] . ( 20 sec) [ -6315.2290] [ 728] [depth= 11] . ( 20 sec) [ -6305.4350] [ 727] [depth= 18] . ( 20 sec) [ -6305.2048] [ 727] [depth= 1] . ( 20 sec) [ -6270.5568] [ 721] [depth= 8] . ( 21 sec) [ -6259.9931] [ 723] [depth= 23] . ( 21 sec) [ -6254.8611] [ 723] [depth= 14] . ( 21 sec) [ -6227.0316] [ 723] [depth= 6] . ( 21 sec) [ -6220.7320] [ 723] [depth= 3] . ( 21 sec) [ -6219.8260] [ 719] [depth= 3] . ( 21 sec) [ -6202.5985] [ 716] [depth= 12] . ( 21 sec) [ -6170.4765] [ 717] [depth= 1] . ( 21 sec) [ -6100.3322] [ 699] [depth= 21] . ( 21 sec) [ -6061.6302] [ 691] [depth= 15] . ( 21 sec) [ -6059.7320] [ 691] [depth= 1] . ( 22 sec) [ -6046.3304] [ 691] [depth= 22] . ( 22 sec) [ -6045.9939] [ 691] [depth= 1] . ( 22 sec) [ -6044.2944] [ 691] [depth= 19] . ( 22 sec) [ -6023.0714] [ 691] [depth= 7] . ( 22 sec) [ -5991.5310] [ 691] [depth= 1] . ( 22 sec) [ -5976.6328] [ 688] [depth= 20] . ( 22 sec) [ -5946.4408] [ 688] [depth= 1] . ( 22 sec) [ -5923.2799] [ 688] [depth= 2] . ( 22 sec) [ -5856.0284] [ 684] [depth= 5] . ( 23 sec) [ -5841.6365] [ 675] [depth= 5] . ( 23 sec) [ -5826.3824] [ 676] [depth= 3] . ( 23 sec) [ -5732.7045] [ 667] [depth= 14] . ( 23 sec) [ -5682.3460] [ 659] [depth= 2] . ( 23 sec) [ -5670.2434] [ 660] [depth= 19] . ( 23 sec) [ -5669.6946] [ 660] [depth= 18] . ( 23 sec) [ -5651.8527] [ 655] [depth= 4] . ( 23 sec) [ -5593.2489] [ 655] [depth= 1] . ( 23 sec) [ -5574.8192] [ 656] [depth= 2] . ( 23 sec) [ -5572.2802] [ 658] [depth= 1] . ( 23 sec) [ -5530.1873] [ 647] [depth= 21] . ( 24 sec) [ -5496.2714] [ 641] [depth= 12] . ( 24 sec) [ -5492.2544] [ 638] [depth= 20] . ( 24 sec) [ -5481.2244] [ 636] [depth= 14] . ( 24 sec) [ -5474.7773] [ 636] [depth= 21] . ( 24 sec) [ -5447.0761] [ 631] [depth= 6] . ( 24 sec) [ -5432.8704] [ 630] [depth= 5] . ( 24 sec) [ -5430.7329] [ 629] [depth= 10] . ( 24 sec) [ -5354.7974] [ 631] [depth= 9] . ( 25 sec) [ -5308.2222] [ 626] [depth= 9] . ( 25 sec) [ -5302.9952] [ 625] [depth= 7] . ( 25 sec) [ -5302.7621] [ 625] [depth= 1] . ( 25 sec) [ -5302.6303] [ 625] [depth= 2] . ( 25 sec) [ -5275.8362] [ 621] [depth= 6] . ( 25 sec) [ -5272.3639] [ 621] [depth= 3] . ( 25 sec) [ -5271.4120] [ 618] [depth= 20] . ( 25 sec) [ -5227.7975] [ 618] [depth= 2] . ( 25 sec) [ -5178.7465] [ 608] [depth= 23] . ( 26 sec) [ -5165.8545] [ 606] [depth= 19] . ( 26 sec) [ -5165.7741] [ 606] [depth= 2] . ( 26 sec) [ -5155.1808] [ 605] [depth= 15] . ( 26 sec) [ -5153.8858] [ 605] [depth= 1] . ( 26 sec) [ -5152.0444] [ 604] [depth= 7] . ( 26 sec) [ -5151.8591] [ 604] [depth= 1] . ( 26 sec) [ -5128.7638] [ 601] [depth= 11] . ( 27 sec) [ -5120.3906] [ 599] [depth= 14] . ( 27 sec) [ -5118.6614] [ 598] [depth= 8] . ( 27 sec) [ -5091.6631] [ 598] [depth= 2] . ( 27 sec) [ -5044.6822] [ 588] [depth= 14] . ( 27 sec) [ -5044.4946] [ 588] [depth= 1] . ( 27 sec) [ -5030.6716] [ 586] [depth= 9] . ( 27 sec) [ -5009.3649] [ 584] [depth= 11] . ( 27 sec) [ -5004.7482] [ 584] [depth= 12] . ( 27 sec) [ -4999.0330] [ 584] [depth= 2] . ( 27 sec) [ -4986.3611] [ 582] [depth= 4] . ( 28 sec) [ -4986.0955] [ 582] [depth= 3] . ( 28 sec) [ -4986.0004] [ 582] [depth= 3] . ( 28 sec) [ -4970.9791] [ 579] [depth= 17] . ( 28 sec) [ -4970.9573] [ 579] [depth= 4] . ( 28 sec) [ -4970.6168] [ 579] [depth= 2] . ( 28 sec) [ -4970.5822] [ 579] [depth= 7] . ( 28 sec) [ -4964.0322] [ 576] [depth= 10] . ( 28 sec) [ -4963.9862] [ 576] [depth= 5] . ( 28 sec) [ -4950.8169] [ 575] [depth= 5] . ( 28 sec) [ -4948.6055] [ 575] [depth= 4] . ( 29 sec) [ -4927.7816] [ 574] [depth= 6] . ( 29 sec) [ -4924.8033] [ 580] [depth= 1] . ( 29 sec) [ -4922.8373] [ 580] [depth= 16] . ( 29 sec) [ -4905.5807] [ 575] [depth= 17] . ( 29 sec) [ -4903.6590] [ 575] [depth= 2] . ( 29 sec) [ -4886.8541] [ 574] [depth= 3] . ( 29 sec) [ -4840.5958] [ 564] [depth= 11] . ( 29 sec) [ -4834.9774] [ 564] [depth= 1] . ( 29 sec) [ -4790.3998] [ 556] [depth= 4] . ( 29 sec) [ -4789.5007] [ 556] [depth= 8] . ( 30 sec) [ -4789.0674] [ 557] [depth= 9] . ( 30 sec) [ -4788.5190] [ 557] [depth= 2] . ( 30 sec) [ -4787.5026] [ 557] [depth= 4] . ( 30 sec) [ -4787.4743] [ 557] [depth= 1] . ( 30 sec) [ -4786.2874] [ 557] [depth= 1] . ( 30 sec) [ -4778.6336] [ 558] [depth= 1] . ( 30 sec) [ -4759.2901] [ 554] [depth= 17] . ( 30 sec) [ -4757.6567] [ 554] [depth= 1] . ( 30 sec) [ -4749.1006] [ 552] [depth= 1] . ( 30 sec) [ -4745.5853] [ 552] [depth= 1] . ( 30 sec) [ -4701.6324] [ 542] [depth= 7] . ( 31 sec) [ -4695.9630] [ 542] [depth= 2] . ( 31 sec) [ -4695.7588] [ 542] [depth= 1] . ( 31 sec) [ -4695.7355] [ 542] [depth= 5] . ( 31 sec) [ -4666.0066] [ 539] [depth= 19] . ( 31 sec) [ -4665.4725] [ 539] [depth= 7] . ( 31 sec) [ -4665.0115] [ 539] [depth= 1] . ( 31 sec) [ -4664.9379] [ 539] [depth= 4] . ( 31 sec) [ -4664.7956] [ 539] [depth= 3] . ( 31 sec) [ -4663.6699] [ 539] [depth= 4] . ( 31 sec) [ -4663.6221] [ 539] [depth= 1] . ( 31 sec) [ -4663.5456] [ 539] [depth= 20] . ( 32 sec) [ -4649.0652] [ 537] [depth= 7] . ( 32 sec) [ -4645.6274] [ 537] [depth= 5] . ( 32 sec) [ -4644.8409] [ 538] [depth= 1] . ( 32 sec) [ -4642.3101] [ 537] [depth= 7] . ( 32 sec) [ -4642.2999] [ 537] [depth= 4] . ( 32 sec) [ -4641.2923] [ 535] [depth= 2] . ( 32 sec) [ -4620.2517] [ 536] [depth= 1] . ( 32 sec) [ -4613.9405] [ 535] [depth= 1] . ( 33 sec) [ -4613.1052] [ 535] [depth= 3] . ( 33 sec) [ -4609.5368] [ 535] [depth= 1] . ( 33 sec) [ -4606.7090] [ 535] [depth= 1] . ( 33 sec) [ -4588.1791] [ 537] [depth= 1] . ( 33 sec) [ -4587.3988] [ 537] [depth= 19] . ( 33 sec) [ -4584.1726] [ 537] [depth= 2] . ( 34 sec) [ -4583.7726] [ 537] [depth= 1] . ( 34 sec) [ -4559.4570] [ 530] [depth= 10] . ( 34 sec) [ -4530.9592] [ 521] [depth= 7] . ( 35 sec) [ -4514.9451] [ 519] [depth= 2] . ( 35 sec) [ -4509.3432] [ 519] [depth= 2] . ( 35 sec) [ -4496.5197] [ 515] [depth= 19] . ( 35 sec) [ -4474.5545] [ 511] [depth= 12] . ( 35 sec) [ -4456.9448] [ 508] [depth= 11] . ( 35 sec) [ -4453.0123] [ 508] [depth= 2] . ( 35 sec) [ -4452.9536] [ 508] [depth= 1] . ( 35 sec) [ -4444.3813] [ 508] [depth= 14] . ( 35 sec) [ -4431.7342] [ 505] [depth= 2] . ( 35 sec) [ -4431.5784] [ 505] [depth= 2] . ( 35 sec) [ -4425.5113] [ 502] [depth= 9] . ( 36 sec) [ -4425.3390] [ 502] [depth= 2] . ( 36 sec) [ -4423.5822] [ 502] [depth= 14] . ( 36 sec) [ -4406.0511] [ 498] [depth= 1] . ( 36 sec) [ -4403.9487] [ 498] [depth= 2] . ( 36 sec) [ -4399.6216] [ 487] [depth= 1] . ( 37 sec) [ -4395.4048] [ 487] [depth= 1] . ( 38 sec) [ -4370.6930] [ 481] [depth= 5] . ( 38 sec) [ -4370.1443] [ 481] [depth= 1] . ( 38 sec) [ -4368.7240] [ 481] [depth= 3] . ( 38 sec) [ -4368.7081] [ 481] [depth= 7] . ( 38 sec) [ -4366.0332] [ 481] [depth= 4] . ( 38 sec) [ -4360.6752] [ 481] [depth= 1] . ( 38 sec) [ -4360.4445] [ 481] [depth= 9] . ( 38 sec) [ -4353.3351] [ 481] [depth= 3] . ( 38 sec) [ -4342.2277] [ 479] [depth= 12] . ( 39 sec) [ -4341.7210] [ 479] [depth= 2] . ( 39 sec) [ -4338.2852] [ 478] [depth= 19] . ( 39 sec) [ -4338.2489] [ 478] [depth= 2] . ( 39 sec) [ -4338.1595] [ 478] [depth= 3] . ( 39 sec) [ -4335.0216] [ 478] [depth= 13] . ( 39 sec) [ -4328.9786] [ 478] [depth= 20] . ( 39 sec) [ -4300.9318] [ 472] [depth= 24] . ( 39 sec) [ -4300.6606] [ 472] [depth= 1] . ( 39 sec) [ -4300.2347] [ 472] [depth= 1] . ( 40 sec) [ -4299.5196] [ 472] [depth= 2] . ( 40 sec) [ -4294.6975] [ 473] [depth= 1] . ( 40 sec) [ -4294.4937] [ 473] [depth= 3] . ( 40 sec) [ -4293.6520] [ 473] [depth= 1] . ( 40 sec) [ -4286.8687] [ 472] [depth= 19] . ( 40 sec) [ -4273.7885] [ 470] [depth= 1] . ( 40 sec) [ -4239.9580] [ 470] [depth= 1] . ( 40 sec) [ -4239.8417] [ 470] [depth= 3] . ( 40 sec) [ -4237.5122] [ 470] [depth= 1] . ( 40 sec) [ -4237.0064] [ 470] [depth= 7] . ( 41 sec) [ -4231.0242] [ 469] [depth= 2] . ( 41 sec) [ -4225.9489] [ 468] [depth= 4] . ( 41 sec) [ -4224.2763] [ 468] [depth= 8] . ( 41 sec) [ -4223.7998] [ 468] [depth= 1] . ( 41 sec) [ -4223.6288] [ 467] [depth= 10] . ( 41 sec) [ -4223.4882] [ 467] [depth= 1] . ( 41 sec) [ -4211.6980] [ 466] [depth= 1] . ( 41 sec) [ -4211.6593] [ 466] [depth= 11] . ( 41 sec) [ -4198.2570] [ 464] [depth= 13] . ( 41 sec) [ -4198.0956] [ 464] [depth= 2] . ( 42 sec) [ -4176.3796] [ 459] [depth= 6] . ( 42 sec) [ -4154.8280] [ 455] [depth= 11] . ( 42 sec) [ -4151.9908] [ 454] [depth= 7] . ( 43 sec) [ -4134.7510] [ 451] [depth= 2] . ( 43 sec) [ -4109.4642] [ 446] [depth= 7] . ( 44 sec) [ -4104.8571] [ 446] [depth= 1] . ( 44 sec) [ -4077.8602] [ 441] [depth= 3] . ( 44 sec) [ -4077.8232] [ 441] [depth= 3] . ( 45 sec) [ -4076.4823] [ 441] [depth= 1] . ( 45 sec) [ -4076.3926] [ 441] [depth= 2] . ( 45 sec) [ -4076.0050] [ 441] [depth= 2] . ( 46 sec) [ -3988.9765] [Branch lengths ] . ( 48 sec) [ -3964.8956] [GTR parameters ] . ( 49 sec) [ -3928.0380] [Alpha ][ 0.250961] . ( 49 sec) [ -3920.0791] [ 432] [depth= 1] . ( 49 sec) [ -3916.2725] [ 431] [depth= 5] . ( 49 sec) [ -3903.4003] [ 427] [depth= 1] . ( 49 sec) [ -3903.3754] [ 427] [depth= 18] . ( 52 sec) [ -3896.3969] [ 426] [depth= 1] . ( 52 sec) [ -3890.0072] [ 425] [depth= 4] . ( 54 sec) [ -3889.3767] [ 425] [depth= 2] . ( 54 sec) [ -3888.3761] [ 424] [depth= 14] . ( 54 sec) [ -3878.2971] [ 420] [depth= 1] . ( 55 sec) [ -3878.2752] [ 420] [depth= 26] . ( 55 sec) [ -3867.5790] [ 417] [depth= 11] . ( 55 sec) [ -3848.1270] [ 416] [depth= 24] . ( 55 sec) [ -3847.7801] [ 416] [depth= 2] . ( 55 sec) [ -3847.7270] [ 416] [depth= 3] . ( 57 sec) [ -3847.6742] [ 416] [depth= 1] . ( 57 sec) [ -3847.6591] [ 416] [depth= 3] . ( 57 sec) [ -3834.8699] [ 413] [depth= 1] . ( 57 sec) [ -3834.8301] [ 413] [depth= 4] . ( 59 sec) [ -3834.7067] [ 413] [depth= 1] . ( 61 sec) [ -3820.3225] [ 411] [depth= 1] . ( 62 sec) [ -3820.2673] [ 411] [depth= 16] . ( 63 sec) [ -3813.9659] [ 410] [depth= 4] . ( 63 sec) [ -3813.9281] [ 410] [depth= 2] . ( 64 sec) [ -3804.4558] [ 409] [depth= 9] . ( 64 sec) [ -3799.4911] [ 408] [depth= 3] . ( 65 sec) [ -3790.4230] [ 405] [depth= 1] . ( 66 sec) [ -3789.8484] [ 405] [depth= 1] . ( 66 sec) [ -3789.8361] [ 405] [depth= 6] . ( 68 sec) [ -3776.8817] [ 403] [depth= 11] . ( 68 sec) [ -3776.7760] [ 403] [depth= 2] . ( 68 sec) [ -3776.7078] [ 403] [depth= 19] . ( 68 sec) [ -3775.3638] [ 403] [depth= 22] . ( 68 sec) [ -3775.2938] [ 403] [depth= 1] . ( 69 sec) [ -3763.4389] [ 400] [depth= 4] . ( 70 sec) [ -3762.9485] [ 400] [depth= 1] . ( 70 sec) [ -3757.7886] [ 399] [depth= 7] . ( 70 sec) [ -3757.7274] [ 398] [depth= 3] . ( 70 sec) [ -3757.6206] [ 398] [depth= 2] . ( 71 sec) [ -3756.0501] [ 398] [depth= 5] . ( 71 sec) [ -3749.7786] [ 397] [depth= 16] . ( 71 sec) [ -3749.4976] [ 397] [depth= 5] . ( 71 sec) [ -3734.4188] [ 394] [depth= 7] . ( 72 sec) [ -3724.7863] [ 393] [depth= 9] . ( 73 sec) [ -3724.7384] [ 393] [depth= 3] . ( 74 sec) [ -3723.2237] [ 393] [depth= 12] . ( 74 sec) [ -3691.3592] [ 388] [depth= 3] . ( 74 sec) [ -3690.5920] [ 388] [depth= 1] . ( 74 sec) [ -3690.2377] [ 387] [depth= 15] . ( 74 sec) [ -3690.1064] [ 387] [depth= 3] . ( 74 sec) [ -3684.2036] [ 386] [depth= 5] . ( 75 sec) [ -3683.7242] [ 386] [depth= 3] . ( 75 sec) [ -3683.2195] [ 386] [depth= 5] . ( 75 sec) [ -3683.1726] [ 386] [depth= 1] . ( 75 sec) [ -3683.0715] [ 386] [depth= 1] . ( 75 sec) [ -3683.0015] [ 386] [depth= 1] . ( 75 sec) [ -3682.5434] [ 386] [depth= 3] . ( 76 sec) [ -3679.6250] [ 385] [depth= 17] . ( 76 sec) [ -3675.0645] [ 383] [depth= 5] . ( 77 sec) [ -3674.9207] [ 383] [depth= 4] . ( 77 sec) [ -3674.6058] [ 383] [depth= 1] . ( 77 sec) [ -3674.5123] [ 383] [depth= 3] . ( 77 sec) [ -3674.3090] [ 383] [depth= 1] . ( 77 sec) [ -3674.2901] [ 383] [depth= 1] . ( 77 sec) [ -3662.8327] [ 382] [depth= 19] . ( 77 sec) [ -3660.5044] [ 382] [depth= 1] . ( 77 sec) [ -3660.4892] [ 382] [depth= 5] . ( 77 sec) [ -3651.5555] [ 381] [depth= 2] . ( 79 sec) [ -3647.7331] [ 381] [depth= 2] . ( 79 sec) [ -3647.1404] [ 381] [depth= 1] . ( 79 sec) [ -3646.9055] [ 382] [depth= 2] . ( 79 sec) [ -3646.4848] [ 382] [depth= 2] . ( 79 sec) [ -3646.4136] [ 382] [depth= 1] . ( 80 sec) [ -3645.9609] [ 382] [depth= 1] . ( 81 sec) [ -3645.9173] [ 382] [depth= 1] . ( 81 sec) [ -3645.4813] [ 382] [depth= 19] . ( 82 sec) [ -3645.2969] [ 382] [depth= 5] . ( 82 sec) [ -3642.0968] [ 380] [depth= 1] . ( 82 sec) [ -3641.9648] [ 380] [depth= 1] . ( 83 sec) [ -3641.9283] [ 380] [depth= 1] . ( 83 sec) [ -3641.9077] [ 380] [depth= 5] . ( 83 sec) [ -3641.8536] [ 380] [depth= 3] . ( 83 sec) [ -3641.8219] [ 380] [depth= 1] . ( 83 sec) [ -3641.8104] [ 380] [depth= 1] . ( 83 sec) [ -3641.2770] [ 380] [depth= 1] . ( 84 sec) [ -3641.2546] [ 380] [depth= 3] . ( 84 sec) [ -3631.1535] [ 378] [depth= 1] . ( 84 sec) [ -3631.0491] [ 378] [depth= 1] . ( 85 sec) [ -3631.0106] [ 378] [depth= 4] . ( 85 sec) [ -3630.9849] [ 378] [depth= 5] . ( 85 sec) [ -3630.8678] [ 378] [depth= 1] . ( 87 sec) [ -3629.0877] [ 378] [depth= 7] . ( 88 sec) [ -3629.0657] [ 378] [depth= 6] . ( 88 sec) [ -3626.6579] [ 378] [depth= 6] . ( 88 sec) [ -3626.6191] [ 378] [depth= 6] . ( 88 sec) [ -3626.6035] [ 378] [depth= 3] . ( 89 sec) [ -3615.0516] [ 374] [depth= 6] . ( 89 sec) [ -3615.0223] [ 374] [depth= 2] . ( 90 sec) [ -3615.0114] [ 374] [depth= 3] . ( 90 sec) [ -3591.6216] [ 370] [depth= 8] . ( 91 sec) [ -3591.1391] [ 370] [depth= 1] . ( 91 sec) [ -3591.0039] [ 370] [depth= 4] . ( 92 sec) [ -3590.3282] [ 370] [depth= 1] . ( 92 sec) [ -3590.2763] [ 370] [depth= 1] . ( 92 sec) [ -3589.7854] [ 370] [depth= 1] . ( 93 sec) [ -3583.7250] [ 369] [depth= 5] . ( 95 sec) [ -3583.6714] [ 369] [depth= 1] . ( 96 sec) [ -3582.8332] [ 368] [depth= 5] . ( 96 sec) [ -3582.8141] [ 368] [depth= 8] . ( 96 sec) [ -3576.7576] [ 364] [depth= 2] . ( 97 sec) [ -3576.5450] [ 364] [depth= 1] . ( 97 sec) [ -3576.5291] [ 364] [depth= 3] . ( 99 sec) [ -3573.2345] [ 364] [depth= 1] . ( 99 sec) [ -3573.2238] [ 364] [depth= 2] . ( 99 sec) [ -3573.1735] [ 364] [depth= 5] . ( 100 sec) [ -3573.1632] [ 364] [depth= 3] . ( 103 sec) [ -3573.1203] [ 364] [depth= 8] . ( 104 sec) [ -3571.5235] [ 363] [depth= 3] . ( 104 sec) [ -3565.4426] [ 361] [depth= 1] . ( 104 sec) [ -3565.4248] [ 361] [depth= 1] . ( 104 sec) [ -3565.3137] [ 361] [depth= 2] . ( 105 sec) [ -3562.8529] [ 360] [depth= 1] . ( 105 sec) [ -3562.8393] [ 360] [depth= 3] . ( 105 sec) [ -3562.5416] [ 360] [depth= 1] . ( 105 sec) [ -3562.4832] [ 360] [depth= 1] . ( 106 sec) [ -3562.4028] [ 360] [depth= 2] . ( 106 sec) [ -3562.3622] [ 360] [depth= 1] . ( 106 sec) [ -3556.1054] [ 359] [depth= 6] . ( 106 sec) [ -3556.0871] [ 359] [depth= 2] . ( 108 sec) [ -3555.1415] [ 359] [depth= 5] . ( 108 sec) [ -3554.9960] [ 359] [depth= 3] . ( 108 sec) [ -3553.5545] [ 358] [depth= 1] . ( 109 sec) [ -3552.0953] [ 358] [depth= 4] . ( 109 sec) [ -3552.0782] [ 358] [depth= 3] . ( 109 sec) [ -3549.7587] [ 357] [depth= 2] . ( 110 sec) [ -3549.7266] [ 357] [depth= 6] . ( 110 sec) [ -3539.9900] [ 355] [depth= 6] . ( 110 sec) [ -3538.9666] [ 355] [depth= 3] . ( 110 sec) [ -3538.9520] [ 355] [depth= 2] . ( 110 sec) [ -3538.8890] [ 355] [depth= 5] . ( 110 sec) [ -3538.8694] [ 355] [depth= 7] . ( 114 sec) [ -3538.8048] [ 355] [depth= 3] . ( 114 sec) [ -3538.7627] [ 355] [depth= 1] . ( 114 sec) [ -3538.7494] [ 355] [depth= 2] . ( 114 sec) [ -3538.6339] [ 355] [depth= 3] . ( 115 sec) [ -3538.4381] [ 355] [depth= 1] . ( 115 sec) [ -3538.3970] [ 355] [depth= 2] . ( 115 sec) [ -3538.3863] [ 355] [depth= 1] . ( 116 sec) [ -3538.3012] [ 355] [depth= 1] . ( 117 sec) [ -3538.2841] [ 355] [depth= 3] . ( 117 sec) [ -3538.2660] [ 355] [depth= 4] . ( 118 sec) [ -3538.2432] [ 355] [depth= 3] . ( 118 sec) [ -3518.3014] [ 352] [depth= 18] . ( 119 sec) [ -3518.2868] [ 352] [depth= 4] . ( 120 sec) [ -3518.2028] [ 352] [depth= 7] . ( 127 sec) [ -3518.1897] [ 352] [depth= 1] . ( 127 sec) [ -3517.6353] [ 352] [depth= 2] . ( 128 sec) [ -3517.6156] [ 352] [depth= 1] . ( 129 sec) [ -3517.5494] [ 352] [depth= 3] . ( 129 sec) [ -3513.3826] [ 352] [depth= 3] . ( 129 sec) [ -3513.0725] [ 352] [depth= 3] . ( 129 sec) [ -3512.9621] [ 352] [depth= 3] . ( 129 sec) [ -3512.8744] [ 352] [depth= 2] . ( 129 sec) [ -3512.8179] [ 352] [depth= 1] . ( 130 sec) [ -3509.3944] [ 351] [depth= 1] . ( 130 sec) [ -3509.3621] [ 351] [depth= 2] . ( 133 sec) [ -3509.3156] [ 351] [depth= 2] . ( 133 sec) [ -3508.5218] [ 351] [depth= 6] . ( 134 sec) [ -3508.4892] [ 351] [depth= 1] . ( 137 sec) [ -3507.9179] [ 351] [depth= 1] . ( 137 sec) [ -3507.8282] [ 351] [depth= 6] . ( 141 sec) [ -3504.7635] [ 350] [depth= 7] . ( 145 sec) [ -3504.7498] [ 350] [depth= 3] . ( 145 sec) [ -3504.3915] [ 349] [depth= 5] . ( 147 sec) [ -3504.1302] [ 349] [depth= 3] . ( 150 sec) [ -3503.7067] [ 349] [depth= 2] . ( 150 sec) [ -3503.6669] [ 349] [depth= 1] . ( 151 sec) [ -3499.7150] [ 348] [depth= 6] . ( 151 sec) [ -3499.7042] [ 348] [depth= 5] . ( 153 sec) [ -3481.8701] [Branch lengths ] . ( 154 sec) [ -3480.5506] [GTR parameters ] . ( 154 sec) [ -3480.4599] [Alpha ][ 0.264819] . ( 163 sec) [ -3480.4466] [ 348] [depth= 2] . ( 216 sec) [ -3480.4351] [ 348] [depth= 4] . ( 229 sec) [ -3479.4315] [ 348] [depth= 2] . ( 229 sec) [ -3479.3287] [ 348] [depth= 3] . ( 246 sec) [ -3474.4139] [ 347] [depth= 8] . ( 279 sec) [ -3474.2382] [ 347] [depth= 5] . ( 280 sec) [ -3474.1691] [ 347] [depth= 1] . ( 292 sec) [ -3473.3006] [ 347] [depth= 1] . ( 293 sec) [ -3473.2446] [ 347] [depth= 7] . ( 293 sec) [ -3473.0820] [ 347] [depth= 1] . ( 314 sec) [ -3472.7845] [ 347] [depth= 5] . ( 315 sec) [ -3472.3844] [ 347] [depth= 1] . ( 320 sec) [ -3471.6236] [ 346] [depth= 5] . ( 337 sec) [ -3471.5694] [ 346] [depth= 1] . ( 345 sec) [ -3471.5457] [ 346] [depth= 1] . ( 349 sec) [ -3469.5365] [Branch lengths ] . ( 351 sec) [ -3469.4210] [GTR parameters ] . ( 351 sec) [ -3469.4154] [Alpha ][ 0.268614] . ( 555 sec) [ -3469.3738] [Branch lengths ] . ( 650 sec) [ -3469.3703] [Branch lengths ] . ( 650 sec) [ -3469.3703] [Topology ] . ( 652 sec) [ -3469.3700] [Topology ] . ( 653 sec) [ -3469.3664] [GTR parameters ] . ( 653 sec) [ -3469.3664] [Alpha ][ 0.268614] . ( 653 sec) [ -3469.3664] [Topology ] . ( 655 sec) [ -3469.3660] [Topology ] . ( 655 sec) [ -3469.3659] [GTR parameters ] . ( 656 sec) [ -3469.3659] [Alpha ][ 0.268882] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -3469.365939. . Computing pairwise distances... . Building BioNJ tree... . Maximizing likelihood (using NNI moves)... . ( 3 sec) [ -3593.8681] [GTR parameters ] . ( 3 sec) [ -3572.6148] [Alpha ][ 0.500960] . ( 3 sec) [ -3572.6148] [Topology ] . ( 5 sec) [ -3519.3730] [Topology ] . ( 8 sec) [ -3509.5189] [Topology ] . ( 10 sec) [ -3506.2944] [Topology ] . ( 12 sec) [ -3504.2974] [Topology ] . ( 14 sec) [ -3504.1015] [Topology ] . ( 15 sec) [ -3504.0779] [Topology ] . ( 17 sec) [ -3504.7313] [Topology ] . Moving backward . ( 17 sec) [ -3503.2725] [Topology ] . ( 19 sec) [ -3503.0857] [Topology ] . ( 22 sec) [ -3504.2253] [GTR parameters ] . ( 23 sec) [ -3495.1632] [Alpha ][ 0.267622] . ( 23 sec) [ -3495.1632] [Topology ] . ( 24 sec) [ -3493.0420] [Topology ] . ( 26 sec) [ -3493.1186] [Topology ] . Moving backward . ( 26 sec) [ -3492.9346] [Topology ] . ( 28 sec) [ -3493.3411] [Topology ] . Moving backward . ( 28 sec) [ -3492.9330] [Topology ] . ( 30 sec) [ -3493.4804] [Topology ] . Moving backward . ( 30 sec) [ -3492.9140] [Topology ] . ( 32 sec) [ -3493.3163] [Topology ] . Moving backward . ( 32 sec) [ -3492.9024] [Topology ] . Checking for NNIs, optimizing five branches... . ( 44 sec) [ -3493.0797] [Topology ] . ( 45 sec) [ -3492.8590] [GTR parameters ] . ( 46 sec) [ -3492.8542] [Alpha ][ 0.264260] . ( 46 sec) [ -3492.8542] [Topology ] . ( 47 sec) [ -3492.8481] [Topology ] . ( 49 sec) [ -3494.2271] [Topology ] . Moving backward . ( 49 sec) [ -3492.6788] [Topology ] . ( 51 sec) [ -3493.0008] [Topology ] . Moving backward . ( 51 sec) [ -3492.6040] [Topology ] . ( 53 sec) [ -3492.6918] [Topology ] . Moving backward . ( 53 sec) [ -3492.5978] [Topology ] . ( 55 sec) [ -3492.6979] [Topology ] . Moving backward . ( 55 sec) [ -3492.5942] [Topology ] . Checking for NNIs, optimizing five branches... . ( 67 sec) [ -3492.5890] [Topology ] . ( 68 sec) [ -3492.5873] [GTR parameters ] . ( 68 sec) [ -3492.5873] [Alpha ][ 0.263923] . ( 68 sec) [ -3492.5873] [Topology ] . ( 69 sec) [ -3492.5824] [Topology ] . ( 71 sec) [ -3492.5786] [Topology ] . ( 73 sec) [ -3492.5803] [Topology ] . Moving backward . ( 73 sec) [ -3492.5768] [Topology ] . ( 75 sec) [ -3492.5839] [Topology ] . Moving backward . ( 75 sec) [ -3492.5758] [Topology ] . ( 76 sec) [ -3492.5983] [Topology ] . Moving backward . ( 77 sec) [ -3492.5751] [Topology ] . Checking for NNIs, optimizing five branches... . ( 87 sec) [ -3492.5700] [Topology ] . ( 88 sec) [ -3492.5699] [GTR parameters ] . ( 88 sec) [ -3492.5699] [Alpha ][ 0.263923] . ( 88 sec) [ -3492.5699] [Topology ] . ( 89 sec) [ -3492.5657] [Topology ] . ( 91 sec) [ -3492.5632] [Topology ] . ( 93 sec) [ -3492.5785] [Topology ] . Moving backward . ( 93 sec) [ -3492.5615] [Topology ] . ( 95 sec) [ -3492.5855] [Topology ] . Moving backward . ( 95 sec) [ -3492.5595] [Topology ] . ( 96 sec) [ -3492.5860] [Topology ] . Moving backward . ( 97 sec) [ -3492.5564] [Topology ] . ( 98 sec) [ -3492.5628] [Topology ] . Checking for NNIs, optimizing five branches... . ( 109 sec) [ -3492.5521] [Topology ] . ( 109 sec) [ -3492.5521] [GTR parameters ] . ( 109 sec) [ -3492.5521] [Alpha ][ 0.263923] . ( 109 sec) [ -3492.5521] [Topology ] . ( 111 sec) [ -3492.5512] [Topology ] . Checking for NNIs, optimizing five branches... . ( 121 sec) [ -3492.5414] [Topology ] . ( 122 sec) [ -3492.5414] [GTR parameters ] . ( 122 sec) [ -3492.5414] [Alpha ][ 0.263923] . ( 122 sec) [ -3492.5414] [Topology ] . ( 123 sec) [ -3492.5409] [Topology ] . Checking for NNIs, optimizing five branches... . ( 134 sec) [ -3492.5408] [Topology ] . Checking for NNIs, optimizing five branches... . ( 144 sec) [ -3492.5404] [Topology ] . Checking for NNIs, optimizing five branches... . ( 154 sec) [ -3492.5390] [Topology ] . Checking for NNIs, optimizing five branches... . ( 164 sec) [ -3492.5377] [Topology ] . Checking for NNIs, optimizing five branches... . ( 174 sec) [ -3492.5355] [Topology ] . Checking for NNIs, optimizing five branches... . ( 185 sec) [ -3492.5346] [Topology ] . Checking for NNIs, optimizing five branches... . ( 195 sec) [ -3492.5345] [Topology ] . Checking for NNIs, optimizing five branches... . ( 205 sec) [ -3492.5316] [Topology ] . Checking for NNIs, optimizing five branches... . ( 215 sec) [ -3492.5315] [Topology ] . Checking for NNIs, optimizing five branches... . ( 225 sec) [ -3492.5314] [Topology ] . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 238 sec) [ -3593.8681] [GTR parameters ] . ( 238 sec) [ -3572.6148] [Alpha ][ 0.500960] . ( 238 sec) [ -3572.4614] [ 353] [depth= 1] . ( 238 sec) [ -3571.6785] [ 353] [depth= 1] . ( 238 sec) [ -3571.5253] [ 353] [depth= 1] . ( 239 sec) [ -3571.0210] [ 353] [depth= 1] . ( 239 sec) [ -3570.9924] [ 353] [depth= 1] . ( 239 sec) [ -3570.9805] [ 353] [depth= 2] . ( 239 sec) [ -3570.6843] [ 353] [depth= 1] . ( 239 sec) [ -3569.8999] [ 353] [depth= 1] . ( 239 sec) [ -3569.6842] [ 353] [depth= 4] . ( 239 sec) [ -3569.6592] [ 353] [depth= 3] . ( 240 sec) [ -3569.4956] [ 353] [depth= 2] . ( 240 sec) [ -3568.7289] [ 353] [depth= 1] . ( 240 sec) [ -3568.4433] [ 353] [depth= 1] . ( 240 sec) [ -3568.3259] [ 353] [depth= 5] . ( 240 sec) [ -3568.0798] [ 353] [depth= 4] . ( 240 sec) [ -3567.5463] [ 353] [depth= 1] . ( 240 sec) [ -3567.0643] [ 353] [depth= 7] . ( 240 sec) [ -3567.0070] [ 353] [depth= 1] . ( 241 sec) [ -3566.3349] [ 353] [depth= 1] . ( 241 sec) [ -3565.9748] [ 353] [depth= 1] . ( 242 sec) [ -3565.9621] [ 353] [depth= 1] . ( 243 sec) [ -3565.9390] [ 353] [depth= 1] . ( 244 sec) [ -3565.9194] [ 353] [depth= 2] . ( 244 sec) [ -3565.9028] [ 353] [depth= 2] . ( 244 sec) [ -3565.8798] [ 353] [depth= 1] . ( 245 sec) [ -3565.3501] [ 353] [depth= 1] . ( 248 sec) [ -3564.7953] [ 353] [depth= 1] . ( 248 sec) [ -3564.5906] [ 353] [depth= 1] . ( 250 sec) [ -3564.5261] [ 353] [depth= 1] . ( 250 sec) [ -3563.5564] [ 353] [depth= 1] . ( 250 sec) [ -3563.5350] [ 353] [depth= 1] . ( 253 sec) [ -3563.5103] [ 353] [depth= 1] . ( 253 sec) [ -3563.4802] [ 353] [depth= 1] . ( 255 sec) [ -3563.4454] [ 353] [depth= 1] . ( 256 sec) [ -3555.7923] [ 351] [depth= 1] . ( 257 sec) [ -3555.7595] [ 351] [depth= 1] . ( 259 sec) [ -3555.2934] [ 351] [depth= 1] . ( 260 sec) [ -3555.1831] [ 351] [depth= 1] . ( 261 sec) [ -3554.9727] [ 351] [depth= 1] . ( 261 sec) [ -3554.9396] [ 351] [depth= 1] . ( 261 sec) [ -3554.7225] [ 351] [depth= 1] . ( 261 sec) [ -3554.6258] [ 351] [depth= 2] . ( 262 sec) [ -3552.9023] [ 351] [depth= 1] . ( 262 sec) [ -3552.8352] [ 351] [depth= 1] . ( 262 sec) [ -3549.9612] [ 350] [depth= 1] . ( 262 sec) [ -3549.9230] [ 350] [depth= 1] . ( 262 sec) [ -3549.8801] [ 350] [depth= 1] . ( 263 sec) [ -3549.8693] [ 350] [depth= 1] . ( 263 sec) [ -3549.7948] [ 350] [depth= 5] . ( 263 sec) [ -3549.7332] [ 350] [depth= 1] . ( 264 sec) [ -3549.7186] [ 350] [depth= 3] . ( 264 sec) [ -3549.7074] [ 350] [depth= 3] . ( 266 sec) [ -3548.3703] [ 350] [depth= 2] . ( 266 sec) [ -3548.2883] [ 350] [depth= 2] . ( 268 sec) [ -3547.5076] [ 350] [depth= 1] . ( 268 sec) [ -3546.3205] [ 350] [depth= 2] . ( 268 sec) [ -3545.3163] [ 350] [depth= 2] . ( 268 sec) [ -3545.3028] [ 350] [depth= 1] . ( 274 sec) [ -3539.7680] [ 349] [depth= 3] . ( 276 sec) [ -3539.3892] [ 349] [depth= 1] . ( 276 sec) [ -3538.0645] [ 349] [depth= 1] . ( 276 sec) [ -3538.0426] [ 349] [depth= 2] . ( 276 sec) [ -3538.0297] [ 349] [depth= 1] . ( 280 sec) [ -3537.9115] [ 349] [depth= 1] . ( 283 sec) [ -3536.7265] [ 349] [depth= 2] . ( 283 sec) [ -3536.6430] [ 349] [depth= 2] . ( 284 sec) [ -3536.2487] [ 349] [depth= 1] . ( 290 sec) [ -3534.9818] [ 349] [depth= 1] . ( 290 sec) [ -3534.7619] [ 349] [depth= 1] . ( 290 sec) [ -3534.7416] [ 349] [depth= 1] . ( 290 sec) [ -3534.6922] [ 349] [depth= 3] . ( 290 sec) [ -3534.6473] [ 349] [depth= 3] . ( 290 sec) [ -3534.4889] [ 349] [depth= 1] . ( 290 sec) [ -3534.4522] [ 349] [depth= 2] . ( 291 sec) [ -3534.3769] [ 349] [depth= 3] . ( 292 sec) [ -3534.1938] [ 349] [depth= 7] . ( 292 sec) [ -3534.1278] [ 349] [depth= 2] . ( 293 sec) [ -3534.1144] [ 349] [depth= 2] . ( 293 sec) [ -3533.6212] [ 349] [depth= 1] . ( 293 sec) [ -3533.4769] [ 349] [depth= 1] . ( 293 sec) [ -3528.1682] [ 348] [depth= 6] . ( 293 sec) [ -3528.0618] [ 348] [depth= 8] . ( 294 sec) [ -3528.0170] [ 348] [depth= 1] . ( 294 sec) [ -3528.0063] [ 348] [depth= 3] . ( 294 sec) [ -3527.8938] [ 348] [depth= 6] . ( 295 sec) [ -3527.8836] [ 348] [depth= 3] . ( 295 sec) [ -3527.8530] [ 348] [depth= 4] . ( 295 sec) [ -3527.5496] [ 348] [depth= 5] . ( 296 sec) [ -3527.1815] [ 348] [depth= 2] . ( 296 sec) [ -3527.1327] [ 348] [depth= 3] . ( 296 sec) [ -3526.4830] [ 348] [depth= 6] . ( 296 sec) [ -3526.4609] [ 348] [depth= 6] . ( 296 sec) [ -3525.8181] [ 348] [depth= 1] . ( 296 sec) [ -3525.8044] [ 348] [depth= 4] . ( 296 sec) [ -3525.6466] [ 348] [depth= 4] . ( 297 sec) [ -3525.5867] [ 348] [depth= 1] . ( 299 sec) [ -3520.2341] [ 347] [depth= 3] . ( 299 sec) [ -3520.2089] [ 347] [depth= 4] . ( 300 sec) [ -3520.0842] [ 347] [depth= 2] . ( 300 sec) [ -3519.4585] [ 347] [depth= 6] . ( 307 sec) [ -3519.3335] [ 347] [depth= 1] . ( 307 sec) [ -3518.9583] [ 347] [depth= 5] . ( 308 sec) [ -3517.5532] [ 347] [depth= 3] . ( 309 sec) [ -3517.5207] [ 347] [depth= 4] . ( 310 sec) [ -3517.4473] [ 347] [depth= 1] . ( 311 sec) [ -3507.6931] [ 346] [depth= 11] . ( 316 sec) [ -3507.6814] [ 346] [depth= 1] . ( 317 sec) [ -3507.5768] [ 346] [depth= 1] . ( 325 sec) [ -3507.3515] [ 346] [depth= 2] . ( 325 sec) [ -3507.3413] [ 346] [depth= 3] . ( 326 sec) [ -3507.3094] [ 346] [depth= 1] . ( 327 sec) [ -3507.2260] [ 346] [depth= 1] . ( 327 sec) [ -3507.1616] [ 346] [depth= 1] . ( 327 sec) [ -3507.1127] [ 346] [depth= 5] . ( 329 sec) [ -3506.8805] [ 346] [depth= 1] . ( 330 sec) [ -3506.8509] [ 346] [depth= 2] . ( 330 sec) [ -3506.5325] [ 346] [depth= 4] . ( 330 sec) [ -3506.3907] [ 346] [depth= 2] . ( 330 sec) [ -3506.2555] [ 346] [depth= 2] . ( 330 sec) [ -3506.0145] [ 346] [depth= 2] . ( 330 sec) [ -3505.5590] [ 346] [depth= 3] . ( 330 sec) [ -3504.3803] [ 345] [depth= 1] . ( 330 sec) [ -3499.1280] [ 345] [depth= 5] . ( 330 sec) [ -3499.1092] [ 345] [depth= 5] . ( 331 sec) [ -3498.9889] [ 345] [depth= 5] . ( 331 sec) [ -3497.7192] [ 345] [depth= 2] . ( 331 sec) [ -3497.0725] [ 345] [depth= 2] . ( 331 sec) [ -3496.7266] [ 345] [depth= 2] . ( 331 sec) [ -3496.6604] [ 345] [depth= 2] . ( 331 sec) [ -3496.6110] [ 345] [depth= 2] . ( 332 sec) [ -3496.5967] [ 345] [depth= 3] . ( 332 sec) [ -3496.5357] [ 345] [depth= 1] . ( 332 sec) [ -3495.2141] [ 345] [depth= 3] . ( 332 sec) [ -3494.9447] [ 345] [depth= 1] . ( 332 sec) [ -3494.8091] [ 345] [depth= 1] . ( 332 sec) [ -3494.4837] [ 345] [depth= 1] . ( 333 sec) [ -3494.4717] [ 345] [depth= 2] . ( 333 sec) [ -3494.4604] [ 345] [depth= 6] . ( 334 sec) [ -3494.4241] [ 345] [depth= 11] . ( 336 sec) [ -3494.3328] [ 345] [depth= 1] . ( 336 sec) [ -3494.3219] [ 345] [depth= 1] . ( 336 sec) [ -3494.2047] [ 345] [depth= 2] . ( 336 sec) [ -3494.1898] [ 345] [depth= 1] . ( 338 sec) [ -3494.1635] [ 345] [depth= 1] . ( 338 sec) [ -3494.1050] [ 345] [depth= 2] . ( 338 sec) [ -3493.6970] [ 345] [depth= 1] . ( 338 sec) [ -3493.6498] [ 345] [depth= 3] . ( 340 sec) [ -3493.5010] [ 345] [depth= 3] . ( 340 sec) [ -3493.4436] [ 345] [depth= 4] . ( 340 sec) [ -3493.3731] [ 345] [depth= 3] . ( 340 sec) [ -3493.3081] [ 345] [depth= 4] . ( 340 sec) [ -3493.2975] [ 345] [depth= 2] . ( 340 sec) [ -3493.2766] [ 345] [depth= 2] . ( 341 sec) [ -3493.2318] [ 345] [depth= 3] . ( 343 sec) [ -3493.2177] [ 345] [depth= 3] . ( 345 sec) [ -3493.0319] [ 345] [depth= 5] . ( 347 sec) [ -3483.6944] [Branch lengths ] . ( 348 sec) [ -3483.0392] [GTR parameters ] . ( 348 sec) [ -3474.7473] [Alpha ][ 0.270921] . ( 378 sec) [ -3474.2795] [ 345] [depth= 4] . ( 378 sec) [ -3474.2688] [ 345] [depth= 2] . ( 379 sec) [ -3473.8635] [ 346] [depth= 18] . ( 379 sec) [ -3473.5325] [ 346] [depth= 2] . ( 381 sec) [ -3473.4741] [ 346] [depth= 1] . ( 381 sec) [ -3473.3155] [ 346] [depth= 4] . ( 381 sec) [ -3473.1497] [ 346] [depth= 1] . ( 381 sec) [ -3473.1393] [ 346] [depth= 1] . ( 383 sec) [ -3473.0695] [ 346] [depth= 5] . ( 390 sec) [ -3473.0351] [ 346] [depth= 1] . ( 390 sec) [ -3472.9870] [ 346] [depth= 3] . ( 396 sec) [ -3472.8178] [ 346] [depth= 1] . ( 396 sec) [ -3472.7510] [ 346] [depth= 1] . ( 402 sec) [ -3472.6761] [ 346] [depth= 3] . ( 411 sec) [ -3472.6407] [ 346] [depth= 1] . ( 435 sec) [ -3469.9367] [ 345] [depth= 1] . ( 440 sec) [ -3469.7765] [ 345] [depth= 5] . ( 451 sec) [ -3469.7408] [ 345] [depth= 1] . ( 454 sec) [ -3468.8517] [ 344] [depth= 2] . ( 455 sec) [ -3468.8389] [ 344] [depth= 1] . ( 471 sec) [ -3468.8260] [ 344] [depth= 1] . ( 479 sec) [ -3468.8109] [ 344] [depth= 7] . ( 514 sec) [ -3468.7854] [ 344] [depth= 2] . ( 516 sec) [ -3468.6898] [ 344] [depth= 1] . ( 520 sec) [ -3468.6418] [ 344] [depth= 2] . ( 520 sec) [ -3468.6216] [ 344] [depth= 6] . ( 520 sec) [ -3468.5713] [ 344] [depth= 4] . ( 539 sec) [ -3465.7730] [Branch lengths ] . ( 541 sec) [ -3465.4756] [GTR parameters ] . ( 541 sec) [ -3465.4752] [Alpha ][ 0.269862] . ( 565 sec) [ -3462.4315] [ 343] [depth= 8] . ( 591 sec) [ -3462.3105] [ 343] [depth= 1] . ( 597 sec) [ -3462.2283] [ 343] [depth= 3] . ( 742 sec) [ -3461.3728] [Branch lengths ] . ( 743 sec) [ -3461.3136] [GTR parameters ] . ( 744 sec) [ -3461.3110] [Alpha ][ 0.272528] . ( 946 sec) [ -3461.1530] [Branch lengths ] . ( 1041 sec) [ -3461.1520] [Branch lengths ] . ( 1041 sec) [ -3461.1520] [Topology ] . ( 1043 sec) [ -3461.1520] [Topology ] . ( 1044 sec) [ -3461.1516] [GTR parameters ] . ( 1044 sec) [ -3461.1516] [Alpha ][ 0.272528] . Checking for NNIs, optimizing five branches... . ( 1055 sec) [ -3461.1515] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -3492.531436 . Log likelihood obtained after SPR moves : -3461.151501 . Log likelihood of the current tree: -3461.151501. . Printing the most likely tree in file 'nucleic_M2916_143x897_2006.phy_phyml_tree.txt'... . Best log likelihood : -3460.529417 . Time used 0h17m47s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 5578.17user 0.00system 1:33:24elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps