.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : nucleic_M2932_68x1712_2006.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : yes . Number of random starting trees : 5 . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . 5 sites are made from completely undetermined states ('X', '-', '?' or 'N')... . Compressing sequences... . 1264 patterns found. (out of a total of 1712 sites) . 601 sites without polymorphism (35.11%). . [Random start 1/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . This analysis requires at least 45Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 3 sec) [ -46460.6386] [GTR parameters ] . ( 3 sec) [ -45300.9675] [Alpha ][ 0.500960] . ( 4 sec) [ -44943.0231] [ 7827] [depth= 10] . ( 4 sec) [ -44886.3969] [ 7836] [depth= 1] . ( 4 sec) [ -43933.0509] [ 7544] [depth= 13] . ( 4 sec) [ -43429.1120] [ 7422] [depth= 7] . ( 5 sec) [ -43401.0974] [ 7422] [depth= 1] . ( 5 sec) [ -43370.9585] [ 7421] [depth= 3] . ( 5 sec) [ -43298.7591] [ 7426] [depth= 2] . ( 5 sec) [ -41469.5537] [ 7388] [depth= 3] . ( 6 sec) [ -41154.4700] [ 7368] [depth= 1] . ( 6 sec) [ -40500.4348] [ 7361] [depth= 6] . ( 6 sec) [ -40497.8931] [ 7330] [depth= 8] . ( 6 sec) [ -40486.4938] [ 7328] [depth= 1] . ( 7 sec) [ -40358.2170] [ 7285] [depth= 5] . ( 7 sec) [ -40345.8449] [ 7286] [depth= 1] . ( 8 sec) [ -39569.8427] [ 7259] [depth= 9] . ( 8 sec) [ -38513.8797] [ 7246] [depth= 7] . ( 8 sec) [ -38375.9052] [ 7157] [depth= 6] . ( 9 sec) [ -38346.8387] [ 7157] [depth= 1] . ( 9 sec) [ -38327.3971] [ 7152] [depth= 2] . ( 9 sec) [ -38273.3823] [ 7150] [depth= 1] . ( 9 sec) [ -38232.1692] [ 7145] [depth= 1] . ( 10 sec) [ -38189.1360] [ 7145] [depth= 9] . ( 10 sec) [ -37859.8135] [ 7102] [depth= 8] . ( 10 sec) [ -37387.5801] [ 7066] [depth= 7] . ( 11 sec) [ -37091.3904] [ 6980] [depth= 8] . ( 11 sec) [ -36717.6078] [ 6971] [depth= 3] . ( 11 sec) [ -36521.8146] [ 6916] [depth= 9] . ( 11 sec) [ -36282.2192] [ 6869] [depth= 4] . ( 11 sec) [ -35945.0220] [ 6830] [depth= 4] . ( 12 sec) [ -35786.9720] [ 6828] [depth= 1] . ( 12 sec) [ -35324.3316] [ 6668] [depth= 18] . ( 12 sec) [ -34942.4614] [ 6574] [depth= 9] . ( 12 sec) [ -34378.7064] [ 6605] [depth= 17] . ( 13 sec) [ -34246.2287] [ 6555] [depth= 3] . ( 13 sec) [ -34185.8259] [ 6544] [depth= 5] . ( 13 sec) [ -33734.8448] [ 6436] [depth= 3] . ( 14 sec) [ -33656.5861] [ 6439] [depth= 1] . ( 14 sec) [ -33474.9055] [ 6407] [depth= 18] . ( 14 sec) [ -33387.3752] [ 6362] [depth= 1] . ( 15 sec) [ -33014.2227] [ 6282] [depth= 8] . ( 15 sec) [ -31849.8315] [ 6209] [depth= 9] . ( 15 sec) [ -31839.5514] [ 6193] [depth= 1] . ( 16 sec) [ -31534.4136] [ 6107] [depth= 1] . ( 17 sec) [ -31465.3565] [ 6109] [depth= 1] . ( 17 sec) [ -30821.7906] [ 5827] [depth= 11] . ( 17 sec) [ -29731.3376] [ 5770] [depth= 16] . ( 17 sec) [ -28527.3685] [ 5550] [depth= 12] . ( 18 sec) [ -28389.6535] [ 5497] [depth= 2] . ( 18 sec) [ -28373.2694] [ 5503] [depth= 1] . ( 18 sec) [ -28272.0557] [ 5490] [depth= 5] . ( 18 sec) [ -28025.8525] [ 5419] [depth= 8] . ( 19 sec) [ -27583.5482] [ 5240] [depth= 4] . ( 19 sec) [ -27265.7794] [ 5144] [depth= 8] . ( 19 sec) [ -27242.8688] [ 5155] [depth= 1] . ( 19 sec) [ -26879.5957] [ 5113] [depth= 8] . ( 20 sec) [ -26759.8345] [ 5112] [depth= 2] . ( 20 sec) [ -25995.2779] [ 5024] [depth= 12] . ( 20 sec) [ -25895.6919] [ 5023] [depth= 11] . ( 20 sec) [ -25752.1459] [ 4941] [depth= 4] . ( 21 sec) [ -25685.9602] [ 4916] [depth= 11] . ( 21 sec) [ -25484.2147] [ 4911] [depth= 1] . ( 22 sec) [ -25424.2712] [ 4898] [depth= 8] . ( 22 sec) [ -25218.2645] [ 4888] [depth= 3] . ( 25 sec) [ -25073.6452] [ 4836] [depth= 6] . ( 26 sec) [ -24926.4685] [ 4785] [depth= 9] . ( 26 sec) [ -24925.3873] [ 4785] [depth= 3] . ( 27 sec) [ -24683.3219] [ 4742] [depth= 7] . ( 27 sec) [ -24593.4016] [ 4742] [depth= 1] . ( 28 sec) [ -24587.1202] [ 4742] [depth= 1] . ( 29 sec) [ -24040.8778] [ 4743] [depth= 1] . ( 30 sec) [ -24014.5040] [ 4722] [depth= 5] . ( 30 sec) [ -23898.2997] [ 4714] [depth= 1] . ( 30 sec) [ -23777.9535] [ 4716] [depth= 3] . ( 31 sec) [ -23747.0899] [ 4716] [depth= 2] . ( 32 sec) [ -23723.1553] [ 4702] [depth= 10] . ( 32 sec) [ -23718.5754] [ 4702] [depth= 1] . ( 33 sec) [ -23112.7495] [ 4639] [depth= 10] . ( 33 sec) [ -23037.2695] [ 4519] [depth= 9] . ( 34 sec) [ -23034.3866] [ 4519] [depth= 1] . ( 34 sec) [ -22621.1358] [ 4481] [depth= 2] . ( 34 sec) [ -22253.3221] [ 4464] [depth= 4] . ( 34 sec) [ -21804.2157] [ 4349] [depth= 4] . ( 35 sec) [ -21786.1476] [ 4339] [depth= 8] . ( 36 sec) [ -21692.3943] [ 4339] [depth= 1] . ( 36 sec) [ -21660.2883] [ 4352] [depth= 1] . ( 36 sec) [ -21571.1069] [ 4292] [depth= 3] . ( 36 sec) [ -21492.8926] [ 4267] [depth= 16] . ( 37 sec) [ -21465.1119] [ 4263] [depth= 1] . ( 37 sec) [ -21422.9728] [ 4184] [depth= 6] . ( 37 sec) [ -21086.6565] [ 4148] [depth= 5] . ( 37 sec) [ -20425.3677] [ 4144] [depth= 1] . ( 38 sec) [ -20425.2108] [ 4144] [depth= 3] . ( 38 sec) [ -20139.2625] [ 4107] [depth= 5] . ( 38 sec) [ -20101.1247] [ 4107] [depth= 2] . ( 39 sec) [ -20100.9047] [ 4107] [depth= 2] . ( 39 sec) [ -20056.6762] [ 4044] [depth= 17] . ( 39 sec) [ -20052.0947] [ 4048] [depth= 1] . ( 39 sec) [ -20024.2578] [ 4048] [depth= 15] . ( 41 sec) [ -19999.0386] [ 4047] [depth= 2] . ( 41 sec) [ -19985.5435] [ 4046] [depth= 5] . ( 41 sec) [ -19971.4010] [ 4039] [depth= 4] . ( 42 sec) [ -19670.3635] [ 4039] [depth= 1] . ( 43 sec) [ -19652.2572] [ 4042] [depth= 1] . ( 43 sec) [ -19295.7736] [ 4038] [depth= 2] . ( 44 sec) [ -19279.4765] [ 4038] [depth= 3] . ( 44 sec) [ -19191.5284] [ 4028] [depth= 7] . ( 45 sec) [ -19191.3408] [ 4028] [depth= 1] . ( 45 sec) [ -18721.4392] [ 3883] [depth= 14] . ( 45 sec) [ -18575.9925] [ 3873] [depth= 3] . ( 46 sec) [ -18196.3098] [ 3848] [depth= 1] . ( 46 sec) [ -17883.7574] [ 3773] [depth= 6] . ( 46 sec) [ -17868.5769] [ 3767] [depth= 1] . ( 47 sec) [ -17686.2318] [ 3740] [depth= 2] . ( 47 sec) [ -17409.6898] [ 3723] [depth= 15] . ( 49 sec) [ -17403.9833] [ 3723] [depth= 1] . ( 49 sec) [ -17267.3307] [ 3666] [depth= 3] . ( 49 sec) [ -17255.7928] [ 3634] [depth= 11] . ( 50 sec) [ -17088.2614] [ 3557] [depth= 7] . ( 51 sec) [ -16899.6347] [ 3556] [depth= 1] . ( 51 sec) [ -16899.5048] [ 3556] [depth= 1] . ( 51 sec) [ -16760.6680] [ 3558] [depth= 1] . ( 51 sec) [ -16747.8747] [ 3558] [depth= 4] . ( 52 sec) [ -16744.2823] [ 3558] [depth= 1] . ( 52 sec) [ -16739.4471] [ 3558] [depth= 1] . ( 52 sec) [ -16516.7479] [ 3530] [depth= 6] . ( 53 sec) [ -16508.9415] [ 3527] [depth= 2] . ( 53 sec) [ -16507.6944] [ 3489] [depth= 5] . ( 53 sec) [ -16500.8011] [ 3482] [depth= 2] . ( 53 sec) [ -16495.3997] [ 3473] [depth= 1] . ( 54 sec) [ -16490.4598] [ 3472] [depth= 1] . ( 54 sec) [ -16481.3401] [ 3470] [depth= 4] . ( 54 sec) [ -16474.0539] [ 3466] [depth= 2] . ( 54 sec) [ -16448.1985] [ 3463] [depth= 2] . ( 55 sec) [ -16442.7806] [ 3463] [depth= 1] . ( 55 sec) [ -16430.9371] [ 3462] [depth= 1] . ( 55 sec) [ -16427.9692] [ 3465] [depth= 1] . ( 56 sec) [ -16408.7711] [ 3443] [depth= 7] . ( 56 sec) [ -16381.0197] [ 3406] [depth= 2] . ( 56 sec) [ -16376.8022] [ 3403] [depth= 1] . ( 56 sec) [ -16222.2912] [ 3385] [depth= 2] . ( 56 sec) [ -16220.9059] [ 3391] [depth= 1] . ( 57 sec) [ -16063.8715] [ 3396] [depth= 2] . ( 57 sec) [ -16058.4230] [ 3396] [depth= 1] . ( 57 sec) [ -16050.5214] [ 3396] [depth= 2] . ( 58 sec) [ -16044.4098] [ 3393] [depth= 1] . ( 58 sec) [ -16031.6927] [ 3392] [depth= 1] . ( 58 sec) [ -15968.7933] [ 3405] [depth= 1] . ( 59 sec) [ -15922.6896] [ 3386] [depth= 5] . ( 59 sec) [ -15916.4873] [ 3374] [depth= 2] . ( 59 sec) [ -15916.4028] [ 3374] [depth= 1] . ( 60 sec) [ -15871.0936] [ 3373] [depth= 3] . ( 60 sec) [ -15870.9876] [ 3373] [depth= 1] . ( 60 sec) [ -15859.4061] [ 3373] [depth= 2] . ( 61 sec) [ -15858.7822] [ 3374] [depth= 2] . ( 62 sec) [ -15857.1410] [ 3373] [depth= 1] . ( 63 sec) [ -15848.3003] [ 3375] [depth= 6] . ( 63 sec) [ -15827.2787] [ 3379] [depth= 1] . ( 63 sec) [ -15813.3417] [ 3376] [depth= 1] . ( 63 sec) [ -15811.8516] [ 3377] [depth= 2] . ( 64 sec) [ -15809.8283] [ 3384] [depth= 1] . ( 64 sec) [ -15798.8291] [ 3384] [depth= 3] . ( 64 sec) [ -15795.7087] [ 3384] [depth= 5] . ( 65 sec) [ -15780.1083] [ 3387] [depth= 1] . ( 65 sec) [ -15779.9953] [ 3387] [depth= 3] . ( 65 sec) [ -15779.8057] [ 3387] [depth= 2] . ( 67 sec) [ -15349.0523] [Branch lengths ] . ( 74 sec) [ -15244.8534] [GTR parameters ] . ( 74 sec) [ -15244.1951] [Alpha ][ 0.526590] . ( 75 sec) [ -15234.1366] [ 3378] [depth= 5] . ( 75 sec) [ -15225.0499] [ 3355] [depth= 4] . ( 76 sec) [ -15224.2090] [ 3358] [depth= 1] . ( 77 sec) [ -15224.1871] [ 3358] [depth= 3] . ( 77 sec) [ -15196.3832] [ 3325] [depth= 2] . ( 83 sec) [ -15195.9804] [ 3325] [depth= 5] . ( 84 sec) [ -15191.2658] [ 3320] [depth= 3] . ( 84 sec) [ -15190.6033] [ 3320] [depth= 8] . ( 85 sec) [ -15187.7050] [ 3319] [depth= 7] . ( 85 sec) [ -15182.9208] [ 3314] [depth= 4] . ( 85 sec) [ -15179.5262] [ 3314] [depth= 5] . ( 88 sec) [ -15175.5104] [ 3314] [depth= 1] . ( 90 sec) [ -15175.0436] [ 3314] [depth= 2] . ( 91 sec) [ -15170.7609] [ 3314] [depth= 1] . ( 92 sec) [ -15160.8867] [ 3313] [depth= 2] . ( 92 sec) [ -15159.3841] [ 3313] [depth= 1] . ( 93 sec) [ -15159.2380] [ 3312] [depth= 1] . ( 96 sec) [ -15158.8780] [ 3312] [depth= 1] . ( 96 sec) [ -15100.1404] [ 3269] [depth= 4] . ( 96 sec) [ -15100.1042] [ 3269] [depth= 3] . ( 97 sec) [ -15098.2092] [ 3269] [depth= 1] . ( 97 sec) [ -15098.1847] [ 3269] [depth= 1] . ( 98 sec) [ -15095.9622] [ 3266] [depth= 1] . ( 98 sec) [ -15095.7379] [ 3266] [depth= 1] . ( 99 sec) [ -15092.1657] [ 3265] [depth= 1] . ( 99 sec) [ -15082.5554] [ 3267] [depth= 7] . ( 101 sec) [ -15082.3277] [ 3267] [depth= 1] . ( 101 sec) [ -15082.0313] [ 3267] [depth= 2] . ( 102 sec) [ -15081.1811] [ 3263] [depth= 1] . ( 103 sec) [ -15080.9987] [ 3263] [depth= 1] . ( 104 sec) [ -15079.2094] [ 3262] [depth= 2] . ( 104 sec) [ -15056.9311] [ 3265] [depth= 1] . ( 104 sec) [ -15056.6612] [ 3265] [depth= 6] . ( 104 sec) [ -15056.4236] [ 3265] [depth= 3] . ( 105 sec) [ -15056.0231] [ 3265] [depth= 4] . ( 106 sec) [ -15053.9629] [ 3262] [depth= 1] . ( 106 sec) [ -15053.3798] [ 3262] [depth= 1] . ( 108 sec) [ -15053.2808] [ 3262] [depth= 3] . ( 108 sec) [ -15027.1700] [ 3262] [depth= 1] . ( 108 sec) [ -15027.0837] [ 3262] [depth= 5] . ( 112 sec) [ -15026.7904] [ 3262] [depth= 2] . ( 112 sec) [ -15026.5665] [ 3262] [depth= 2] . ( 112 sec) [ -15025.6186] [ 3258] [depth= 1] . ( 113 sec) [ -15025.3587] [ 3258] [depth= 1] . ( 114 sec) [ -15025.1836] [ 3259] [depth= 1] . ( 117 sec) [ -15024.9466] [ 3259] [depth= 1] . ( 117 sec) [ -15020.5384] [ 3259] [depth= 1] . ( 119 sec) [ -15020.4695] [ 3259] [depth= 2] . ( 119 sec) [ -15020.4044] [ 3259] [depth= 1] . ( 119 sec) [ -15020.3875] [ 3259] [depth= 4] . ( 120 sec) [ -15020.3507] [ 3259] [depth= 4] . ( 121 sec) [ -15014.2373] [ 3261] [depth= 1] . ( 121 sec) [ -15014.1370] [ 3261] [depth= 1] . ( 123 sec) [ -15013.3948] [ 3266] [depth= 1] . ( 124 sec) [ -14995.6427] [ 3257] [depth= 2] . ( 127 sec) [ -14994.2811] [ 3257] [depth= 2] . ( 128 sec) [ -14994.2172] [ 3257] [depth= 1] . ( 128 sec) [ -14994.2003] [ 3256] [depth= 2] . ( 131 sec) [ -14994.1858] [ 3256] [depth= 2] . ( 131 sec) [ -14993.9826] [ 3256] [depth= 3] . ( 135 sec) [ -14958.8163] [Branch lengths ] . ( 138 sec) [ -14958.4814] [GTR parameters ] . ( 138 sec) [ -14958.4375] [Alpha ][ 0.533883] . ( 140 sec) [ -14958.0937] [ 3259] [depth= 3] . ( 140 sec) [ -14951.0232] [ 3224] [depth= 6] . ( 144 sec) [ -14950.8329] [ 3225] [depth= 1] . ( 144 sec) [ -14948.8095] [ 3224] [depth= 1] . ( 147 sec) [ -14948.4092] [ 3224] [depth= 1] . ( 154 sec) [ -14948.2091] [ 3222] [depth= 1] . ( 155 sec) [ -14947.9989] [ 3224] [depth= 1] . ( 155 sec) [ -14947.9574] [ 3224] [depth= 1] . ( 157 sec) [ -14945.5243] [ 3226] [depth= 1] . ( 158 sec) [ -14945.4832] [ 3226] [depth= 6] . ( 160 sec) [ -14945.3662] [ 3226] [depth= 1] . ( 169 sec) [ -14945.0456] [ 3225] [depth= 1] . ( 169 sec) [ -14944.4592] [ 3220] [depth= 1] . ( 193 sec) [ -14944.3782] [ 3220] [depth= 1] . ( 204 sec) [ -14933.7612] [Branch lengths ] . ( 206 sec) [ -14933.7259] [GTR parameters ] . ( 207 sec) [ -14933.5987] [Alpha ][ 0.546697] . ( 238 sec) [ -14933.5782] [ 3220] [depth= 1] . ( 239 sec) [ -14933.4641] [ 3225] [depth= 2] . ( 259 sec) [ -14933.0704] [ 3225] [depth= 1] . ( 273 sec) [ -14928.0126] [Branch lengths ] . ( 276 sec) [ -14927.9622] [GTR parameters ] . ( 276 sec) [ -14927.9472] [Alpha ][ 0.551180] . ( 290 sec) [ -14927.9363] [ 3225] [depth= 1] . ( 310 sec) [ -14926.9636] [ 3227] [depth= 1] . ( 314 sec) [ -14926.9529] [ 3227] [depth= 1] . ( 345 sec) [ -14925.8537] [Branch lengths ] . ( 347 sec) [ -14925.8343] [GTR parameters ] . ( 347 sec) [ -14925.7929] [Alpha ][ 0.558789] . ( 419 sec) [ -14925.5180] [Branch lengths ] . ( 549 sec) [ -14925.4433] [ 3227] [depth= 1] . ( 573 sec) [ -14925.3807] [Branch lengths ] . ( 576 sec) [ -14925.3722] [GTR parameters ] . ( 576 sec) [ -14925.3585] [Alpha ][ 0.563222] . ( 576 sec) [ -14925.3585] [Topology ] . ( 579 sec) [ -14924.2349] [Topology ] . ( 583 sec) [ -14923.7382] [Topology ] . ( 586 sec) [ -14923.4920] [Topology ] . ( 590 sec) [ -14923.3365] [Topology ] . ( 593 sec) [ -14923.2376] [Topology ] . ( 596 sec) [ -14923.1741] [Topology ] . ( 600 sec) [ -14923.1337] [Topology ] . ( 601 sec) [ -14923.1268] [GTR parameters ] . ( 602 sec) [ -14923.1200] [Alpha ][ 0.566377] . ( 602 sec) [ -14923.1200] [Topology ] . ( 605 sec) [ -14923.0924] [Topology ] . ( 609 sec) [ -14923.0753] [Topology ] . ( 612 sec) [ -14923.0646] [Topology ] . ( 615 sec) [ -14923.0578] [Topology ] . ( 619 sec) [ -14923.0536] [Topology ] . ( 622 sec) [ -14923.0509] [Topology ] . ( 623 sec) [ -14923.0508] [GTR parameters ] . ( 623 sec) [ -14923.0506] [Alpha ][ 0.566988] . ( 623 sec) [ -14923.0506] [Topology ] . ( 627 sec) [ -14923.0488] [Topology ] . ( 630 sec) [ -14923.0477] [Topology ] . ( 633 sec) [ -14923.0471] [Topology ] . ( 634 sec) [ -14923.0470] [GTR parameters ] . ( 634 sec) [ -14923.0470] [Alpha ][ 0.566988] . ( 635 sec) [ -14923.0470] [Topology ] . ( 638 sec) [ -14923.0466] [Topology ] . ( 639 sec) [ -14923.0466] [GTR parameters ] . ( 639 sec) [ -14923.0466] [Alpha ][ 0.566988] . Checking for NNIs, optimizing five branches... . ( 677 sec) [ -14922.9346] [Topology ] . Checking for NNIs, optimizing five branches... . ( 714 sec) [ -14922.9325] [Topology ] . Checking for NNIs, optimizing five branches... . ( 746 sec) [ -14922.9324] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -14922.932357. . [Random start 2/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 6 sec) [ -41765.2332] [GTR parameters ] . ( 7 sec) [ -40698.7892] [Alpha ][ 0.500960] . ( 7 sec) [ -40410.0311] [ 8067] [depth= 10] . ( 8 sec) [ -39748.6565] [ 7831] [depth= 11] . ( 8 sec) [ -39715.6711] [ 7828] [depth= 1] . ( 8 sec) [ -39706.1418] [ 7824] [depth= 6] . ( 8 sec) [ -39686.4476] [ 7809] [depth= 1] . ( 8 sec) [ -39549.4947] [ 7799] [depth= 10] . ( 9 sec) [ -38954.8005] [ 7773] [depth= 2] . ( 9 sec) [ -38709.4426] [ 7702] [depth= 4] . ( 9 sec) [ -38524.4097] [ 7693] [depth= 5] . ( 9 sec) [ -38438.9126] [ 7681] [depth= 1] . ( 9 sec) [ -38438.8172] [ 7651] [depth= 2] . ( 10 sec) [ -37898.5001] [ 7556] [depth= 2] . ( 10 sec) [ -37324.8678] [ 7522] [depth= 5] . ( 10 sec) [ -36907.4850] [ 7513] [depth= 2] . ( 10 sec) [ -35877.5518] [ 7464] [depth= 4] . ( 10 sec) [ -35616.6659] [ 7315] [depth= 10] . ( 11 sec) [ -35429.3842] [ 7284] [depth= 1] . ( 11 sec) [ -35087.0793] [ 7283] [depth= 1] . ( 11 sec) [ -34774.6338] [ 7216] [depth= 12] . ( 11 sec) [ -34291.5289] [ 7056] [depth= 11] . ( 11 sec) [ -34064.6677] [ 7023] [depth= 1] . ( 12 sec) [ -33396.9926] [ 6880] [depth= 5] . ( 12 sec) [ -33382.9535] [ 6837] [depth= 4] . ( 12 sec) [ -32996.1304] [ 6728] [depth= 7] . ( 12 sec) [ -32461.1880] [ 6730] [depth= 10] . ( 13 sec) [ -31644.7415] [ 6649] [depth= 10] . ( 13 sec) [ -31051.6712] [ 6543] [depth= 17] . ( 13 sec) [ -30707.7558] [ 6550] [depth= 16] . ( 13 sec) [ -30566.5773] [ 6503] [depth= 5] . ( 14 sec) [ -30512.0229] [ 6503] [depth= 2] . ( 14 sec) [ -29931.8899] [ 6461] [depth= 15] . ( 14 sec) [ -29903.5666] [ 6457] [depth= 2] . ( 14 sec) [ -29877.3547] [ 6390] [depth= 19] . ( 14 sec) [ -29334.4241] [ 6381] [depth= 3] . ( 15 sec) [ -29148.0042] [ 6343] [depth= 1] . ( 15 sec) [ -28996.2149] [ 6343] [depth= 2] . ( 15 sec) [ -28899.3301] [ 6329] [depth= 11] . ( 15 sec) [ -28565.0448] [ 6326] [depth= 1] . ( 16 sec) [ -28042.7228] [ 6275] [depth= 10] . ( 16 sec) [ -28020.0519] [ 6254] [depth= 1] . ( 16 sec) [ -27975.7947] [ 6236] [depth= 7] . ( 16 sec) [ -27874.2413] [ 6176] [depth= 9] . ( 16 sec) [ -27727.2544] [ 6156] [depth= 3] . ( 17 sec) [ -27303.5943] [ 6079] [depth= 6] . ( 17 sec) [ -27159.7162] [ 6065] [depth= 21] . ( 17 sec) [ -26996.2785] [ 5995] [depth= 4] . ( 17 sec) [ -26817.5461] [ 5966] [depth= 1] . ( 18 sec) [ -26406.0738] [ 5852] [depth= 4] . ( 18 sec) [ -25954.5950] [ 5714] [depth= 14] . ( 18 sec) [ -25688.2112] [ 5714] [depth= 1] . ( 18 sec) [ -25512.5222] [ 5629] [depth= 5] . ( 19 sec) [ -25491.1937] [ 5589] [depth= 18] . ( 19 sec) [ -25129.7507] [ 5461] [depth= 7] . ( 19 sec) [ -25107.5658] [ 5457] [depth= 1] . ( 19 sec) [ -25031.3484] [ 5410] [depth= 5] . ( 20 sec) [ -25030.5934] [ 5410] [depth= 1] . ( 20 sec) [ -24683.8865] [ 5342] [depth= 4] . ( 20 sec) [ -24671.0378] [ 5315] [depth= 10] . ( 20 sec) [ -24629.4486] [ 5291] [depth= 5] . ( 21 sec) [ -24300.1412] [ 5181] [depth= 5] . ( 21 sec) [ -24046.4648] [ 5119] [depth= 8] . ( 21 sec) [ -23655.2473] [ 5118] [depth= 5] . ( 21 sec) [ -23433.3302] [ 4978] [depth= 18] . ( 22 sec) [ -23248.3758] [ 5001] [depth= 1] . ( 22 sec) [ -23233.9957] [ 4978] [depth= 1] . ( 22 sec) [ -23020.2522] [ 4831] [depth= 19] . ( 22 sec) [ -22986.0259] [ 4830] [depth= 4] . ( 23 sec) [ -22923.3251] [ 4816] [depth= 7] . ( 23 sec) [ -22879.9253] [ 4891] [depth= 3] . ( 23 sec) [ -22501.7512] [ 4728] [depth= 11] . ( 23 sec) [ -22496.5547] [ 4728] [depth= 3] . ( 24 sec) [ -22089.0014] [ 4614] [depth= 15] . ( 24 sec) [ -22060.8673] [ 4614] [depth= 2] . ( 24 sec) [ -21830.4956] [ 4559] [depth= 6] . ( 24 sec) [ -21785.3950] [ 4559] [depth= 1] . ( 25 sec) [ -21677.6122] [ 4502] [depth= 2] . ( 25 sec) [ -21352.8361] [ 4472] [depth= 3] . ( 25 sec) [ -21259.1938] [ 4472] [depth= 1] . ( 25 sec) [ -20934.7036] [ 4446] [depth= 2] . ( 26 sec) [ -20878.3842] [ 4441] [depth= 2] . ( 26 sec) [ -20825.2202] [ 4437] [depth= 3] . ( 26 sec) [ -20805.1186] [ 4436] [depth= 5] . ( 27 sec) [ -20796.3031] [ 4435] [depth= 1] . ( 27 sec) [ -20696.1710] [ 4430] [depth= 15] . ( 27 sec) [ -20669.9035] [ 4424] [depth= 1] . ( 27 sec) [ -20370.1174] [ 4361] [depth= 5] . ( 28 sec) [ -20092.8968] [ 4255] [depth= 13] . ( 28 sec) [ -20065.0811] [ 4290] [depth= 1] . ( 28 sec) [ -19863.3085] [ 4230] [depth= 7] . ( 28 sec) [ -19800.5645] [ 4167] [depth= 18] . ( 28 sec) [ -19739.0014] [ 4161] [depth= 2] . ( 29 sec) [ -19662.3871] [ 4126] [depth= 2] . ( 29 sec) [ -19646.3377] [ 4125] [depth= 3] . ( 29 sec) [ -19639.6086] [ 4121] [depth= 1] . ( 29 sec) [ -19218.2864] [ 4120] [depth= 1] . ( 30 sec) [ -19210.7447] [ 4113] [depth= 2] . ( 30 sec) [ -19090.5764] [ 4119] [depth= 3] . ( 30 sec) [ -19089.7380] [ 4120] [depth= 2] . ( 30 sec) [ -19083.8113] [ 4067] [depth= 3] . ( 31 sec) [ -18881.9323] [ 4053] [depth= 5] . ( 31 sec) [ -18857.4267] [ 4053] [depth= 1] . ( 31 sec) [ -18815.7072] [ 4054] [depth= 1] . ( 31 sec) [ -18808.0345] [ 4055] [depth= 2] . ( 31 sec) [ -18795.9920] [ 4055] [depth= 3] . ( 32 sec) [ -18784.6624] [ 4055] [depth= 1] . ( 32 sec) [ -18761.1420] [ 4051] [depth= 1] . ( 32 sec) [ -18748.1376] [ 4051] [depth= 2] . ( 33 sec) [ -18726.3803] [ 4051] [depth= 1] . ( 33 sec) [ -18713.1994] [ 4051] [depth= 3] . ( 34 sec) [ -18712.7580] [ 4051] [depth= 3] . ( 34 sec) [ -18707.5865] [ 4051] [depth= 4] . ( 34 sec) [ -18707.4939] [ 4051] [depth= 1] . ( 35 sec) [ -18693.7520] [ 4049] [depth= 2] . ( 35 sec) [ -18693.6245] [ 4049] [depth= 3] . ( 35 sec) [ -18668.0384] [ 3919] [depth= 2] . ( 36 sec) [ -18645.9040] [ 3919] [depth= 4] . ( 36 sec) [ -18634.1769] [ 3920] [depth= 3] . ( 36 sec) [ -18634.0691] [ 3920] [depth= 1] . ( 36 sec) [ -18631.9352] [ 3920] [depth= 2] . ( 37 sec) [ -18619.6402] [ 3919] [depth= 8] . ( 37 sec) [ -18618.8880] [ 3919] [depth= 3] . ( 37 sec) [ -18618.4004] [ 3918] [depth= 3] . ( 38 sec) [ -18610.8778] [ 3917] [depth= 3] . ( 38 sec) [ -18493.6590] [ 3900] [depth= 1] . ( 38 sec) [ -18352.2264] [ 3860] [depth= 3] . ( 38 sec) [ -18188.1791] [ 3874] [depth= 10] . ( 38 sec) [ -17893.9411] [ 3770] [depth= 2] . ( 39 sec) [ -17893.0635] [ 3769] [depth= 2] . ( 39 sec) [ -17886.2222] [ 3761] [depth= 5] . ( 39 sec) [ -17884.5626] [ 3762] [depth= 1] . ( 39 sec) [ -17848.8576] [ 3752] [depth= 1] . ( 40 sec) [ -17308.8430] [ 3752] [depth= 4] . ( 40 sec) [ -17155.5410] [ 3756] [depth= 1] . ( 40 sec) [ -17141.2363] [ 3705] [depth= 10] . ( 40 sec) [ -17139.9629] [ 3703] [depth= 2] . ( 40 sec) [ -17115.9812] [ 3701] [depth= 3] . ( 41 sec) [ -17065.9953] [ 3701] [depth= 2] . ( 41 sec) [ -17057.6985] [ 3698] [depth= 2] . ( 41 sec) [ -17052.6770] [ 3698] [depth= 1] . ( 41 sec) [ -17001.5378] [ 3704] [depth= 1] . ( 42 sec) [ -16948.7913] [ 3703] [depth= 1] . ( 42 sec) [ -16494.2056] [ 3631] [depth= 3] . ( 42 sec) [ -16488.7776] [ 3631] [depth= 2] . ( 43 sec) [ -16476.9842] [ 3613] [depth= 3] . ( 43 sec) [ -16460.1263] [ 3611] [depth= 6] . ( 43 sec) [ -16448.1146] [ 3609] [depth= 7] . ( 44 sec) [ -16410.7782] [ 3606] [depth= 1] . ( 44 sec) [ -16406.8832] [ 3606] [depth= 2] . ( 44 sec) [ -16390.2378] [ 3606] [depth= 2] . ( 44 sec) [ -16386.1867] [ 3605] [depth= 2] . ( 45 sec) [ -16334.2242] [ 3598] [depth= 1] . ( 45 sec) [ -16306.8682] [ 3598] [depth= 1] . ( 45 sec) [ -16306.4592] [ 3600] [depth= 1] . ( 45 sec) [ -16260.8162] [ 3494] [depth= 17] . ( 46 sec) [ -16256.8697] [ 3494] [depth= 1] . ( 46 sec) [ -16116.0036] [ 3350] [depth= 18] . ( 47 sec) [ -16114.5100] [ 3352] [depth= 9] . ( 47 sec) [ -16113.9534] [ 3352] [depth= 5] . ( 47 sec) [ -16111.0211] [ 3352] [depth= 4] . ( 48 sec) [ -16099.7355] [ 3350] [depth= 5] . ( 48 sec) [ -16095.4708] [ 3351] [depth= 1] . ( 48 sec) [ -16093.3513] [ 3351] [depth= 1] . ( 48 sec) [ -16093.2468] [ 3350] [depth= 1] . ( 49 sec) [ -16064.2110] [ 3341] [depth= 3] . ( 49 sec) [ -16038.9032] [ 3336] [depth= 1] . ( 49 sec) [ -16017.0925] [ 3330] [depth= 1] . ( 49 sec) [ -16015.8266] [ 3330] [depth= 4] . ( 50 sec) [ -16011.0389] [ 3336] [depth= 1] . ( 51 sec) [ -15474.8261] [Branch lengths ] . ( 57 sec) [ -15386.6454] [GTR parameters ] . ( 57 sec) [ -15386.6444] [Alpha ][ 0.501920] . ( 58 sec) [ -15367.5321] [ 3324] [depth= 3] . ( 58 sec) [ -15367.2111] [ 3323] [depth= 1] . ( 58 sec) [ -15360.1383] [ 3317] [depth= 2] . ( 59 sec) [ -15360.1195] [ 3317] [depth= 5] . ( 59 sec) [ -15356.7972] [ 3317] [depth= 1] . ( 60 sec) [ -15356.6689] [ 3317] [depth= 5] . ( 60 sec) [ -15356.4554] [ 3317] [depth= 2] . ( 61 sec) [ -15355.0516] [ 3317] [depth= 4] . ( 61 sec) [ -15349.4622] [ 3316] [depth= 4] . ( 61 sec) [ -15343.5427] [ 3315] [depth= 7] . ( 62 sec) [ -15335.6101] [ 3308] [depth= 7] . ( 62 sec) [ -15335.2110] [ 3308] [depth= 2] . ( 63 sec) [ -15333.1194] [ 3308] [depth= 5] . ( 64 sec) [ -15257.5824] [ 3314] [depth= 1] . ( 64 sec) [ -15251.3182] [ 3298] [depth= 2] . ( 65 sec) [ -15247.7961] [ 3298] [depth= 1] . ( 66 sec) [ -15246.4699] [ 3304] [depth= 1] . ( 67 sec) [ -15246.4142] [ 3307] [depth= 1] . ( 67 sec) [ -15245.8289] [ 3308] [depth= 1] . ( 68 sec) [ -15241.3895] [ 3307] [depth= 4] . ( 68 sec) [ -15241.3487] [ 3307] [depth= 1] . ( 68 sec) [ -15239.5532] [ 3312] [depth= 1] . ( 69 sec) [ -15239.3196] [ 3312] [depth= 10] . ( 70 sec) [ -15236.7577] [ 3310] [depth= 1] . ( 70 sec) [ -15236.1831] [ 3311] [depth= 1] . ( 70 sec) [ -15231.9220] [ 3310] [depth= 1] . ( 71 sec) [ -15231.4839] [ 3310] [depth= 2] . ( 71 sec) [ -15231.1929] [ 3309] [depth= 1] . ( 71 sec) [ -15230.5175] [ 3309] [depth= 2] . ( 71 sec) [ -15229.1076] [ 3296] [depth= 1] . ( 72 sec) [ -15228.4295] [ 3294] [depth= 1] . ( 73 sec) [ -15228.3325] [ 3294] [depth= 3] . ( 73 sec) [ -15225.2441] [ 3285] [depth= 1] . ( 73 sec) [ -15224.9670] [ 3279] [depth= 7] . ( 74 sec) [ -15222.1563] [ 3278] [depth= 1] . ( 75 sec) [ -15220.9494] [ 3278] [depth= 2] . ( 76 sec) [ -15163.2293] [ 3208] [depth= 19] . ( 76 sec) [ -15163.1789] [ 3208] [depth= 2] . ( 77 sec) [ -15162.9741] [ 3209] [depth= 1] . ( 78 sec) [ -15162.9278] [ 3209] [depth= 1] . ( 79 sec) [ -15154.5049] [ 3213] [depth= 2] . ( 79 sec) [ -15154.3912] [ 3213] [depth= 1] . ( 79 sec) [ -15148.3923] [ 3206] [depth= 1] . ( 80 sec) [ -15116.4153] [ 3213] [depth= 1] . ( 80 sec) [ -15116.1191] [ 3218] [depth= 8] . ( 81 sec) [ -15052.3507] [ 3223] [depth= 1] . ( 82 sec) [ -15051.4124] [ 3223] [depth= 1] . ( 82 sec) [ -15042.3232] [ 3222] [depth= 5] . ( 83 sec) [ -15042.3067] [ 3222] [depth= 2] . ( 84 sec) [ -15034.2278] [ 3221] [depth= 2] . ( 85 sec) [ -15034.2031] [ 3221] [depth= 1] . ( 86 sec) [ -15034.1516] [ 3221] [depth= 2] . ( 86 sec) [ -15034.1376] [ 3221] [depth= 1] . ( 86 sec) [ -15033.9802] [ 3221] [depth= 1] . ( 87 sec) [ -15033.8975] [ 3221] [depth= 1] . ( 87 sec) [ -15033.7346] [ 3221] [depth= 1] . ( 88 sec) [ -15033.6572] [ 3221] [depth= 2] . ( 90 sec) [ -15033.5885] [ 3221] [depth= 2] . ( 91 sec) [ -15033.1780] [ 3221] [depth= 1] . ( 91 sec) [ -15032.9440] [ 3221] [depth= 1] . ( 97 sec) [ -15032.8001] [ 3221] [depth= 2] . ( 99 sec) [ -15032.7781] [ 3221] [depth= 1] . ( 102 sec) [ -15027.4743] [ 3216] [depth= 1] . ( 103 sec) [ -15027.4417] [ 3216] [depth= 1] . ( 109 sec) [ -15027.4112] [ 3216] [depth= 1] . ( 110 sec) [ -15022.1325] [ 3229] [depth= 1] . ( 110 sec) [ -15021.7122] [ 3229] [depth= 1] . ( 111 sec) [ -15021.4871] [ 3229] [depth= 1] . ( 112 sec) [ -15021.2604] [ 3229] [depth= 1] . ( 113 sec) [ -15020.7388] [ 3234] [depth= 1] . ( 113 sec) [ -15020.7125] [ 3234] [depth= 4] . ( 113 sec) [ -15012.7912] [ 3237] [depth= 1] . ( 116 sec) [ -15006.8201] [ 3234] [depth= 1] . ( 121 sec) [ -15006.6883] [ 3234] [depth= 1] . ( 124 sec) [ -15006.6736] [ 3234] [depth= 5] . ( 127 sec) [ -14948.7279] [Branch lengths ] . ( 131 sec) [ -14948.3740] [GTR parameters ] . ( 132 sec) [ -14947.2157] [Alpha ][ 0.538029] . ( 139 sec) [ -14946.8449] [ 3224] [depth= 1] . ( 147 sec) [ -14946.1314] [ 3214] [depth= 1] . ( 149 sec) [ -14945.9648] [ 3217] [depth= 2] . ( 150 sec) [ -14945.8403] [ 3217] [depth= 1] . ( 162 sec) [ -14945.7244] [ 3217] [depth= 1] . ( 163 sec) [ -14945.0569] [ 3212] [depth= 1] . ( 170 sec) [ -14944.9666] [ 3212] [depth= 5] . ( 177 sec) [ -14944.9388] [ 3212] [depth= 1] . ( 221 sec) [ -14935.1241] [Branch lengths ] . ( 224 sec) [ -14935.0462] [GTR parameters ] . ( 225 sec) [ -14934.8494] [Alpha ][ 0.553716] . ( 308 sec) [ -14932.9029] [Branch lengths ] . ( 383 sec) [ -14932.2994] [ 3219] [depth= 1] . ( 390 sec) [ -14929.0392] [ 3226] [depth= 1] . ( 392 sec) [ -14929.0088] [ 3226] [depth= 3] . ( 486 sec) [ -14927.5437] [Branch lengths ] . ( 490 sec) [ -14927.4822] [GTR parameters ] . ( 490 sec) [ -14927.4528] [Alpha ][ 0.560165] . ( 586 sec) [ -14927.4243] [ 3226] [depth= 1] . ( 606 sec) [ -14927.4139] [ 3226] [depth= 1] . ( 657 sec) [ -14927.1757] [Branch lengths ] . ( 660 sec) [ -14927.1726] [GTR parameters ] . ( 660 sec) [ -14927.1692] [Alpha ][ 0.562370] . ( 661 sec) [ -14927.1692] [Topology ] . ( 664 sec) [ -14926.0776] [Topology ] . ( 667 sec) [ -14925.4800] [Topology ] . ( 671 sec) [ -14924.9628] [Topology ] . ( 674 sec) [ -14924.6003] [Topology ] . ( 678 sec) [ -14924.3732] [Topology ] . ( 682 sec) [ -14924.2328] [Topology ] . ( 686 sec) [ -14924.1461] [Topology ] . ( 690 sec) [ -14924.1341] [GTR parameters ] . ( 690 sec) [ -14924.1280] [Alpha ][ 0.565348] . ( 691 sec) [ -14924.1280] [Topology ] . ( 695 sec) [ -14924.0723] [Topology ] . ( 699 sec) [ -14924.0387] [Topology ] . ( 703 sec) [ -14924.0184] [Topology ] . ( 707 sec) [ -14924.0064] [Topology ] . ( 711 sec) [ -14923.9991] [Topology ] . ( 715 sec) [ -14923.9947] [Topology ] . ( 716 sec) [ -14923.9944] [GTR parameters ] . ( 717 sec) [ -14923.9940] [Alpha ][ 0.566069] . ( 717 sec) [ -14923.9940] [Topology ] . ( 722 sec) [ -14923.9912] [Topology ] . ( 726 sec) [ -14923.9896] [Topology ] . ( 730 sec) [ -14923.9885] [Topology ] . ( 734 sec) [ -14923.9879] [Topology ] . ( 735 sec) [ -14923.9879] [GTR parameters ] . ( 735 sec) [ -14923.9879] [Alpha ][ 0.566069] . ( 735 sec) [ -14923.9879] [Topology ] . ( 738 sec) [ -14923.9875] [Topology ] . ( 739 sec) [ -14923.9875] [GTR parameters ] . ( 740 sec) [ -14923.9875] [Alpha ][ 0.566069] . Checking for NNIs, optimizing five branches... . ( 773 sec) [ -14923.1599] [Topology ] . Checking for NNIs, optimizing five branches... . ( 813 sec) [ -14923.0690] [Topology ] . Checking for NNIs, optimizing five branches... . ( 845 sec) [ -14923.0689] [Topology ] . Checking for NNIs, optimizing five branches... . ( 876 sec) [ -14923.0687] [Topology ] . Checking for NNIs, optimizing five branches... . ( 908 sec) [ -14923.0668] [Topology ] . Checking for NNIs, optimizing five branches... . ( 941 sec) [ -14923.0667] [Topology ] . Checking for NNIs, optimizing five branches... . ( 977 sec) [ -14923.0588] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -14923.058757. . [Random start 3/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 4 sec) [ -46361.3399] [GTR parameters ] . ( 5 sec) [ -45202.1950] [Alpha ][ 0.500960] . ( 5 sec) [ -44443.2169] [ 8287] [depth= 13] . ( 6 sec) [ -44279.6729] [ 8283] [depth= 1] . ( 6 sec) [ -44115.6399] [ 8222] [depth= 11] . ( 6 sec) [ -43162.9453] [ 8127] [depth= 1] . ( 6 sec) [ -42645.2757] [ 8045] [depth= 6] . ( 6 sec) [ -42390.2070] [ 8003] [depth= 2] . ( 7 sec) [ -42151.7032] [ 7823] [depth= 9] . ( 7 sec) [ -41800.9805] [ 7757] [depth= 2] . ( 7 sec) [ -41502.9534] [ 7733] [depth= 11] . ( 7 sec) [ -41214.3968] [ 7706] [depth= 8] . ( 7 sec) [ -41008.3392] [ 7691] [depth= 2] . ( 8 sec) [ -40263.6688] [ 7604] [depth= 18] . ( 8 sec) [ -39773.0960] [ 7587] [depth= 1] . ( 8 sec) [ -39562.0312] [ 7508] [depth= 14] . ( 8 sec) [ -39436.9980] [ 7402] [depth= 10] . ( 9 sec) [ -39377.9029] [ 7395] [depth= 1] . ( 9 sec) [ -38939.0289] [ 7378] [depth= 18] . ( 9 sec) [ -38852.2018] [ 7299] [depth= 7] . ( 9 sec) [ -38529.6370] [ 7186] [depth= 4] . ( 10 sec) [ -38388.1831] [ 7160] [depth= 13] . ( 10 sec) [ -38318.7722] [ 7150] [depth= 9] . ( 10 sec) [ -38281.5048] [ 7148] [depth= 1] . ( 10 sec) [ -37879.7826] [ 7069] [depth= 8] . ( 11 sec) [ -37546.5967] [ 7029] [depth= 10] . ( 11 sec) [ -37051.3872] [ 6997] [depth= 4] . ( 11 sec) [ -35921.8738] [ 6936] [depth= 5] . ( 12 sec) [ -35325.1247] [ 6921] [depth= 4] . ( 12 sec) [ -34861.2445] [ 6874] [depth= 1] . ( 13 sec) [ -34841.2336] [ 6851] [depth= 1] . ( 13 sec) [ -34472.2721] [ 6843] [depth= 3] . ( 13 sec) [ -33939.7426] [ 6833] [depth= 9] . ( 13 sec) [ -33633.1663] [ 6777] [depth= 17] . ( 13 sec) [ -33589.5845] [ 6777] [depth= 1] . ( 14 sec) [ -32706.3272] [ 6678] [depth= 26] . ( 14 sec) [ -32614.2646] [ 6644] [depth= 10] . ( 14 sec) [ -32161.3724] [ 6578] [depth= 24] . ( 14 sec) [ -31997.2554] [ 6467] [depth= 19] . ( 15 sec) [ -31670.5200] [ 6464] [depth= 28] . ( 15 sec) [ -31597.7960] [ 6420] [depth= 3] . ( 15 sec) [ -31239.4399] [ 6362] [depth= 2] . ( 15 sec) [ -31108.4454] [ 6292] [depth= 24] . ( 16 sec) [ -30541.6982] [ 6179] [depth= 16] . ( 16 sec) [ -30519.2283] [ 6179] [depth= 1] . ( 16 sec) [ -30513.4513] [ 6130] [depth= 3] . ( 16 sec) [ -30406.8904] [ 6102] [depth= 22] . ( 17 sec) [ -30406.4862] [ 6094] [depth= 22] . ( 17 sec) [ -30398.4924] [ 6094] [depth= 1] . ( 17 sec) [ -30386.6366] [ 6094] [depth= 1] . ( 17 sec) [ -30302.2794] [ 6079] [depth= 1] . ( 17 sec) [ -28758.6270] [ 6043] [depth= 3] . ( 18 sec) [ -28716.1242] [ 6043] [depth= 2] . ( 18 sec) [ -28691.4564] [ 6043] [depth= 1] . ( 18 sec) [ -28683.5215] [ 6043] [depth= 1] . ( 19 sec) [ -28661.2702] [ 6043] [depth= 9] . ( 19 sec) [ -28644.5556] [ 6072] [depth= 3] . ( 19 sec) [ -28643.8375] [ 6075] [depth= 3] . ( 19 sec) [ -28639.1951] [ 6076] [depth= 3] . ( 20 sec) [ -28622.1016] [ 6052] [depth= 13] . ( 20 sec) [ -28620.1601] [ 6053] [depth= 1] . ( 20 sec) [ -28615.1660] [ 6049] [depth= 1] . ( 20 sec) [ -28491.8970] [ 5963] [depth= 1] . ( 21 sec) [ -28248.5245] [ 5893] [depth= 13] . ( 21 sec) [ -28064.7342] [ 5829] [depth= 1] . ( 22 sec) [ -27909.7336] [ 5837] [depth= 7] . ( 22 sec) [ -27609.1309] [ 5737] [depth= 11] . ( 22 sec) [ -27409.1877] [ 5707] [depth= 2] . ( 22 sec) [ -26351.1867] [ 5512] [depth= 11] . ( 23 sec) [ -26224.7106] [ 5472] [depth= 3] . ( 23 sec) [ -25999.7333] [ 5431] [depth= 10] . ( 23 sec) [ -25925.7824] [ 5417] [depth= 15] . ( 23 sec) [ -25925.0621] [ 5417] [depth= 1] . ( 24 sec) [ -25908.5630] [ 5415] [depth= 12] . ( 24 sec) [ -25901.6268] [ 5414] [depth= 8] . ( 24 sec) [ -25483.2151] [ 5306] [depth= 9] . ( 24 sec) [ -25391.0442] [ 5306] [depth= 1] . ( 24 sec) [ -25337.7470] [ 5294] [depth= 3] . ( 25 sec) [ -24732.1354] [ 5123] [depth= 13] . ( 25 sec) [ -24711.6299] [ 5120] [depth= 3] . ( 25 sec) [ -24698.7505] [ 5117] [depth= 3] . ( 26 sec) [ -24577.3100] [ 5115] [depth= 12] . ( 26 sec) [ -24548.6165] [ 5107] [depth= 2] . ( 26 sec) [ -24422.0083] [ 5106] [depth= 2] . ( 26 sec) [ -24218.5766] [ 4991] [depth= 9] . ( 26 sec) [ -24010.3313] [ 4990] [depth= 8] . ( 27 sec) [ -23981.0509] [ 4989] [depth= 1] . ( 27 sec) [ -23465.7424] [ 4880] [depth= 14] . ( 27 sec) [ -23368.5880] [ 4879] [depth= 12] . ( 27 sec) [ -23360.6451] [ 4879] [depth= 1] . ( 28 sec) [ -22660.1242] [ 4832] [depth= 3] . ( 28 sec) [ -22495.6567] [ 4769] [depth= 9] . ( 28 sec) [ -22472.4387] [ 4769] [depth= 10] . ( 28 sec) [ -22411.8810] [ 4774] [depth= 2] . ( 28 sec) [ -22376.9034] [ 4768] [depth= 3] . ( 29 sec) [ -22272.1822] [ 4704] [depth= 1] . ( 29 sec) [ -22233.8853] [ 4697] [depth= 6] . ( 29 sec) [ -22190.3288] [ 4666] [depth= 2] . ( 29 sec) [ -22114.0759] [ 4657] [depth= 6] . ( 30 sec) [ -22093.0426] [ 4655] [depth= 1] . ( 30 sec) [ -22041.9095] [ 4654] [depth= 2] . ( 30 sec) [ -22011.1361] [ 4625] [depth= 9] . ( 30 sec) [ -21621.2798] [ 4556] [depth= 3] . ( 31 sec) [ -21547.1919] [ 4560] [depth= 8] . ( 31 sec) [ -21542.9804] [ 4508] [depth= 7] . ( 31 sec) [ -21400.1812] [ 4476] [depth= 4] . ( 31 sec) [ -21016.2837] [ 4445] [depth= 4] . ( 31 sec) [ -20971.8967] [ 4446] [depth= 1] . ( 32 sec) [ -20934.0764] [ 4446] [depth= 6] . ( 32 sec) [ -20911.2608] [ 4443] [depth= 7] . ( 32 sec) [ -20899.7644] [ 4446] [depth= 3] . ( 33 sec) [ -20897.6695] [ 4445] [depth= 5] . ( 33 sec) [ -20603.9994] [ 4445] [depth= 1] . ( 33 sec) [ -20542.6780] [ 4447] [depth= 6] . ( 33 sec) [ -20466.3115] [ 4428] [depth= 15] . ( 34 sec) [ -20455.2256] [ 4427] [depth= 1] . ( 34 sec) [ -20438.7123] [ 4431] [depth= 1] . ( 34 sec) [ -20430.6540] [ 4431] [depth= 1] . ( 34 sec) [ -20151.5474] [ 4366] [depth= 12] . ( 34 sec) [ -19860.7514] [ 4225] [depth= 8] . ( 35 sec) [ -19851.3232] [ 4242] [depth= 1] . ( 35 sec) [ -19632.1167] [ 4171] [depth= 7] . ( 35 sec) [ -19629.8534] [ 4171] [depth= 3] . ( 35 sec) [ -19619.2945] [ 4194] [depth= 3] . ( 35 sec) [ -19520.7706] [ 4173] [depth= 2] . ( 36 sec) [ -18818.7126] [ 4063] [depth= 7] . ( 37 sec) [ -18723.0650] [ 4063] [depth= 1] . ( 37 sec) [ -18624.4123] [ 4051] [depth= 3] . ( 37 sec) [ -18594.5131] [ 4044] [depth= 1] . ( 37 sec) [ -18594.2882] [ 4032] [depth= 3] . ( 38 sec) [ -18589.4177] [ 4030] [depth= 1] . ( 38 sec) [ -18560.1594] [ 4025] [depth= 2] . ( 38 sec) [ -18520.5408] [ 4026] [depth= 1] . ( 38 sec) [ -18327.8492] [ 3923] [depth= 17] . ( 39 sec) [ -18315.3315] [ 3923] [depth= 3] . ( 39 sec) [ -18034.9223] [ 3857] [depth= 3] . ( 39 sec) [ -18029.6820] [ 3875] [depth= 1] . ( 40 sec) [ -17886.4177] [ 3854] [depth= 2] . ( 41 sec) [ -17699.9035] [ 3777] [depth= 1] . ( 41 sec) [ -17699.5435] [ 3777] [depth= 1] . ( 41 sec) [ -17693.3549] [ 3776] [depth= 1] . ( 41 sec) [ -17625.1574] [ 3781] [depth= 7] . ( 41 sec) [ -17524.1214] [ 3769] [depth= 2] . ( 42 sec) [ -17499.2726] [ 3763] [depth= 2] . ( 42 sec) [ -17282.3564] [ 3676] [depth= 15] . ( 42 sec) [ -17198.0713] [ 3676] [depth= 1] . ( 42 sec) [ -17103.4240] [ 3612] [depth= 15] . ( 42 sec) [ -17091.4227] [ 3625] [depth= 6] . ( 43 sec) [ -17090.2524] [ 3624] [depth= 2] . ( 43 sec) [ -17082.2474] [ 3623] [depth= 6] . ( 43 sec) [ -17008.2378] [ 3611] [depth= 4] . ( 43 sec) [ -16996.1637] [ 3610] [depth= 8] . ( 44 sec) [ -16988.8288] [ 3610] [depth= 1] . ( 44 sec) [ -16974.9088] [ 3576] [depth= 5] . ( 44 sec) [ -16835.7546] [ 3583] [depth= 1] . ( 44 sec) [ -16801.2895] [ 3576] [depth= 1] . ( 45 sec) [ -16793.5250] [ 3576] [depth= 1] . ( 45 sec) [ -16791.7186] [ 3576] [depth= 2] . ( 45 sec) [ -16760.2482] [ 3546] [depth= 3] . ( 45 sec) [ -16658.7834] [ 3520] [depth= 4] . ( 46 sec) [ -16576.5366] [ 3519] [depth= 4] . ( 46 sec) [ -16571.4511] [ 3521] [depth= 1] . ( 46 sec) [ -16543.6881] [ 3514] [depth= 2] . ( 46 sec) [ -16513.5766] [ 3505] [depth= 2] . ( 47 sec) [ -16513.2704] [ 3505] [depth= 4] . ( 49 sec) [ -15764.2489] [Branch lengths ] . ( 54 sec) [ -15629.3772] [GTR parameters ] . ( 54 sec) [ -15629.3309] [Alpha ][ 0.494486] . ( 55 sec) [ -15608.2503] [ 3485] [depth= 4] . ( 55 sec) [ -15589.4315] [ 3492] [depth= 4] . ( 56 sec) [ -15577.6711] [ 3482] [depth= 2] . ( 56 sec) [ -15576.3480] [ 3482] [depth= 1] . ( 57 sec) [ -15471.2139] [ 3427] [depth= 1] . ( 57 sec) [ -15470.8584] [ 3415] [depth= 1] . ( 57 sec) [ -15467.8429] [ 3410] [depth= 1] . ( 58 sec) [ -15466.3207] [ 3389] [depth= 1] . ( 61 sec) [ -15465.6992] [ 3389] [depth= 1] . ( 62 sec) [ -15463.7695] [ 3386] [depth= 1] . ( 62 sec) [ -15419.6527] [ 3360] [depth= 1] . ( 63 sec) [ -15418.5979] [ 3360] [depth= 1] . ( 63 sec) [ -15417.7196] [ 3362] [depth= 1] . ( 66 sec) [ -15416.9802] [ 3362] [depth= 4] . ( 66 sec) [ -15416.8044] [ 3362] [depth= 1] . ( 67 sec) [ -15415.8923] [ 3362] [depth= 2] . ( 67 sec) [ -15415.4893] [ 3362] [depth= 3] . ( 68 sec) [ -15405.4455] [ 3357] [depth= 1] . ( 70 sec) [ -15405.4304] [ 3356] [depth= 1] . ( 71 sec) [ -15404.7725] [ 3356] [depth= 1] . ( 72 sec) [ -15404.7252] [ 3356] [depth= 4] . ( 72 sec) [ -15404.6268] [ 3356] [depth= 4] . ( 73 sec) [ -15404.6128] [ 3356] [depth= 4] . ( 73 sec) [ -15401.1348] [ 3356] [depth= 6] . ( 74 sec) [ -15400.1893] [ 3353] [depth= 1] . ( 75 sec) [ -15396.4701] [ 3335] [depth= 1] . ( 75 sec) [ -15392.9727] [ 3335] [depth= 1] . ( 78 sec) [ -15282.3269] [ 3317] [depth= 2] . ( 78 sec) [ -15190.7773] [ 3273] [depth= 2] . ( 78 sec) [ -15190.3997] [ 3273] [depth= 1] . ( 79 sec) [ -15190.3503] [ 3273] [depth= 5] . ( 80 sec) [ -15189.5665] [ 3272] [depth= 2] . ( 80 sec) [ -15187.7790] [ 3273] [depth= 1] . ( 80 sec) [ -15187.5575] [ 3273] [depth= 2] . ( 81 sec) [ -15187.5049] [ 3273] [depth= 2] . ( 81 sec) [ -15187.4854] [ 3273] [depth= 4] . ( 83 sec) [ -15187.1005] [ 3273] [depth= 8] . ( 83 sec) [ -15185.8642] [ 3242] [depth= 5] . ( 83 sec) [ -15162.6192] [ 3238] [depth= 1] . ( 84 sec) [ -15162.4580] [ 3238] [depth= 4] . ( 85 sec) [ -15162.3240] [ 3238] [depth= 7] . ( 87 sec) [ -15133.1023] [ 3235] [depth= 2] . ( 87 sec) [ -15132.3647] [ 3234] [depth= 5] . ( 88 sec) [ -15132.1877] [ 3238] [depth= 1] . ( 88 sec) [ -15127.2732] [ 3239] [depth= 1] . ( 88 sec) [ -15123.3810] [ 3229] [depth= 1] . ( 89 sec) [ -15119.0999] [ 3228] [depth= 3] . ( 89 sec) [ -15118.8910] [ 3228] [depth= 3] . ( 89 sec) [ -15118.7576] [ 3228] [depth= 3] . ( 91 sec) [ -15118.7243] [ 3228] [depth= 3] . ( 91 sec) [ -15118.3074] [ 3228] [depth= 4] . ( 93 sec) [ -15117.1681] [ 3224] [depth= 1] . ( 94 sec) [ -15109.4895] [ 3228] [depth= 1] . ( 94 sec) [ -15106.1404] [ 3223] [depth= 1] . ( 94 sec) [ -15098.7672] [ 3228] [depth= 1] . ( 95 sec) [ -15098.5021] [ 3228] [depth= 1] . ( 96 sec) [ -15007.1655] [ 3198] [depth= 4] . ( 97 sec) [ -15006.6317] [ 3198] [depth= 2] . ( 97 sec) [ -15006.1886] [ 3198] [depth= 1] . ( 98 sec) [ -15005.8599] [ 3197] [depth= 2] . ( 99 sec) [ -15005.8330] [ 3197] [depth= 1] . ( 99 sec) [ -14991.1172] [ 3188] [depth= 1] . ( 100 sec) [ -14991.0961] [ 3188] [depth= 4] . ( 101 sec) [ -14990.7495] [ 3191] [depth= 1] . ( 101 sec) [ -14990.7148] [ 3191] [depth= 4] . ( 101 sec) [ -14990.7004] [ 3191] [depth= 1] . ( 102 sec) [ -14989.6398] [ 3195] [depth= 2] . ( 102 sec) [ -14989.6022] [ 3195] [depth= 3] . ( 102 sec) [ -14988.8420] [ 3195] [depth= 1] . ( 104 sec) [ -14988.8304] [ 3195] [depth= 2] . ( 105 sec) [ -14940.6470] [Branch lengths ] . ( 109 sec) [ -14939.3094] [GTR parameters ] . ( 109 sec) [ -14937.6699] [Alpha ][ 0.537183] . ( 115 sec) [ -14937.2637] [ 3195] [depth= 1] . ( 124 sec) [ -14937.2451] [ 3195] [depth= 1] . ( 132 sec) [ -14937.1685] [ 3195] [depth= 1] . ( 157 sec) [ -14937.1522] [ 3195] [depth= 1] . ( 163 sec) [ -14937.0979] [ 3195] [depth= 2] . ( 165 sec) [ -14937.0575] [ 3192] [depth= 1] . ( 168 sec) [ -14935.8699] [ 3193] [depth= 3] . ( 171 sec) [ -14935.7666] [ 3193] [depth= 2] . ( 173 sec) [ -14929.4098] [Branch lengths ] . ( 176 sec) [ -14929.3138] [GTR parameters ] . ( 176 sec) [ -14929.0471] [Alpha ][ 0.555787] . ( 188 sec) [ -14929.0104] [ 3193] [depth= 1] . ( 243 sec) [ -14927.6984] [Branch lengths ] . ( 245 sec) [ -14927.6805] [GTR parameters ] . ( 245 sec) [ -14927.6444] [Alpha ][ 0.562971] . ( 313 sec) [ -14926.7737] [Branch lengths ] . ( 335 sec) [ -14925.1384] [ 3206] [depth= 1] . ( 459 sec) [ -14923.3659] [Branch lengths ] . ( 461 sec) [ -14923.3479] [GTR parameters ] . ( 462 sec) [ -14923.3479] [Alpha ][ 0.562971] . ( 612 sec) [ -14922.9746] [Branch lengths ] . ( 612 sec) [ -14922.9746] [Topology ] . ( 615 sec) [ -14922.9300] [Topology ] . ( 619 sec) [ -14922.9125] [Topology ] . ( 622 sec) [ -14922.9028] [Topology ] . ( 625 sec) [ -14922.8965] [Topology ] . ( 629 sec) [ -14922.8919] [Topology ] . ( 632 sec) [ -14922.8882] [Topology ] . ( 634 sec) [ -14922.8838] [GTR parameters ] . ( 634 sec) [ -14922.8748] [Alpha ][ 0.566591] . ( 635 sec) [ -14922.8748] [Topology ] . ( 638 sec) [ -14922.8697] [Topology ] . ( 641 sec) [ -14922.8679] [Topology ] . ( 645 sec) [ -14922.8670] [Topology ] . ( 646 sec) [ -14922.8665] [GTR parameters ] . ( 646 sec) [ -14922.8659] [Alpha ][ 0.567539] . ( 646 sec) [ -14922.8659] [Topology ] . ( 650 sec) [ -14922.8650] [Topology ] . ( 651 sec) [ -14922.8650] [GTR parameters ] . ( 651 sec) [ -14922.8650] [Alpha ][ 0.567539] . Checking for NNIs, optimizing five branches... . ( 682 sec) [ -14922.8649] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -14922.864872. . [Random start 4/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 4 sec) [ -49044.4387] [GTR parameters ] . ( 5 sec) [ -47891.4265] [Alpha ][ 0.500960] . ( 5 sec) [ -47836.6199] [ 8134] [depth= 12] . ( 6 sec) [ -47693.9443] [ 8139] [depth= 10] . ( 6 sec) [ -47358.7258] [ 8136] [depth= 8] . ( 6 sec) [ -47036.8403] [ 8060] [depth= 1] . ( 6 sec) [ -46914.4404] [ 8012] [depth= 11] . ( 7 sec) [ -45866.0132] [ 7861] [depth= 8] . ( 7 sec) [ -44911.5935] [ 7855] [depth= 1] . ( 7 sec) [ -44256.2207] [ 7853] [depth= 5] . ( 7 sec) [ -43393.4445] [ 7819] [depth= 2] . ( 7 sec) [ -42694.9091] [ 7782] [depth= 3] . ( 8 sec) [ -42277.5102] [ 7711] [depth= 1] . ( 8 sec) [ -42046.7548] [ 7643] [depth= 9] . ( 8 sec) [ -40365.3982] [ 7622] [depth= 1] . ( 8 sec) [ -38044.5821] [ 7599] [depth= 13] . ( 8 sec) [ -37590.9784] [ 7432] [depth= 15] . ( 9 sec) [ -37336.3623] [ 7426] [depth= 1] . ( 9 sec) [ -37302.7832] [ 7431] [depth= 1] . ( 9 sec) [ -37175.3163] [ 7441] [depth= 2] . ( 9 sec) [ -36699.4366] [ 7332] [depth= 8] . ( 10 sec) [ -36622.8271] [ 7317] [depth= 2] . ( 10 sec) [ -36341.9679] [ 7224] [depth= 6] . ( 10 sec) [ -36204.7946] [ 7223] [depth= 3] . ( 10 sec) [ -35814.0531] [ 7198] [depth= 4] . ( 10 sec) [ -35594.9780] [ 7195] [depth= 5] . ( 11 sec) [ -35364.0415] [ 7116] [depth= 6] . ( 11 sec) [ -35178.2864] [ 7054] [depth= 4] . ( 11 sec) [ -35103.2463] [ 6986] [depth= 13] . ( 11 sec) [ -34491.5367] [ 6981] [depth= 1] . ( 11 sec) [ -34469.6502] [ 6954] [depth= 17] . ( 12 sec) [ -34288.0231] [ 6953] [depth= 2] . ( 12 sec) [ -34219.2438] [ 6916] [depth= 1] . ( 12 sec) [ -34034.1054] [ 6911] [depth= 5] . ( 12 sec) [ -33125.4160] [ 6876] [depth= 5] . ( 13 sec) [ -32495.1843] [ 6727] [depth= 13] . ( 13 sec) [ -32294.4931] [ 6614] [depth= 11] . ( 13 sec) [ -32046.5864] [ 6565] [depth= 6] . ( 13 sec) [ -31618.3777] [ 6414] [depth= 11] . ( 14 sec) [ -31616.6228] [ 6410] [depth= 1] . ( 14 sec) [ -31207.0698] [ 6307] [depth= 13] . ( 14 sec) [ -31101.8649] [ 6249] [depth= 7] . ( 14 sec) [ -30996.0123] [ 6248] [depth= 1] . ( 14 sec) [ -30380.7932] [ 6229] [depth= 1] . ( 15 sec) [ -30067.3166] [ 6166] [depth= 9] . ( 15 sec) [ -29573.7728] [ 6052] [depth= 2] . ( 15 sec) [ -29515.9363] [ 6041] [depth= 7] . ( 16 sec) [ -29271.4558] [ 5918] [depth= 10] . ( 16 sec) [ -28605.7925] [ 5883] [depth= 2] . ( 16 sec) [ -28286.5364] [ 5812] [depth= 11] . ( 16 sec) [ -28171.3125] [ 5812] [depth= 1] . ( 16 sec) [ -27751.0705] [ 5796] [depth= 12] . ( 17 sec) [ -27632.3473] [ 5743] [depth= 1] . ( 17 sec) [ -27533.1052] [ 5721] [depth= 6] . ( 17 sec) [ -27024.1580] [ 5625] [depth= 10] . ( 18 sec) [ -27010.6185] [ 5625] [depth= 1] . ( 18 sec) [ -26738.2802] [ 5599] [depth= 9] . ( 18 sec) [ -26431.3511] [ 5598] [depth= 11] . ( 18 sec) [ -25511.7540] [ 5387] [depth= 13] . ( 19 sec) [ -25413.0984] [ 5348] [depth= 12] . ( 19 sec) [ -25262.1598] [ 5347] [depth= 2] . ( 19 sec) [ -24910.0334] [ 5342] [depth= 3] . ( 19 sec) [ -24741.8331] [ 5290] [depth= 7] . ( 20 sec) [ -24084.1885] [ 5248] [depth= 3] . ( 20 sec) [ -23819.6031] [ 5154] [depth= 2] . ( 20 sec) [ -23764.3004] [ 5134] [depth= 2] . ( 20 sec) [ -23560.0748] [ 5072] [depth= 8] . ( 21 sec) [ -23556.1335] [ 5072] [depth= 2] . ( 21 sec) [ -23529.0986] [ 5069] [depth= 2] . ( 21 sec) [ -23354.7600] [ 5040] [depth= 2] . ( 21 sec) [ -23345.5136] [ 5045] [depth= 1] . ( 22 sec) [ -23153.4477] [ 5011] [depth= 5] . ( 22 sec) [ -23099.8073] [ 4983] [depth= 1] . ( 22 sec) [ -23083.5851] [ 4983] [depth= 1] . ( 22 sec) [ -23078.2224] [ 4983] [depth= 1] . ( 23 sec) [ -22704.1064] [ 4892] [depth= 15] . ( 23 sec) [ -22563.4440] [ 4768] [depth= 11] . ( 23 sec) [ -22541.0514] [ 4772] [depth= 1] . ( 23 sec) [ -22178.5028] [ 4730] [depth= 4] . ( 24 sec) [ -21850.1776] [ 4569] [depth= 11] . ( 24 sec) [ -21493.3968] [ 4558] [depth= 1] . ( 24 sec) [ -21229.6857] [ 4482] [depth= 7] . ( 24 sec) [ -21036.0664] [ 4400] [depth= 6] . ( 25 sec) [ -20766.0245] [ 4393] [depth= 2] . ( 25 sec) [ -20746.5859] [ 4404] [depth= 1] . ( 25 sec) [ -20645.3129] [ 4379] [depth= 3] . ( 25 sec) [ -20068.1004] [ 4272] [depth= 13] . ( 25 sec) [ -20067.2319] [ 4272] [depth= 1] . ( 26 sec) [ -20057.5681] [ 4270] [depth= 11] . ( 26 sec) [ -20034.7223] [ 4270] [depth= 1] . ( 26 sec) [ -20034.6382] [ 4270] [depth= 1] . ( 26 sec) [ -19921.1824] [ 4270] [depth= 2] . ( 27 sec) [ -19882.6386] [ 4269] [depth= 18] . ( 27 sec) [ -19807.1453] [ 4268] [depth= 18] . ( 27 sec) [ -19787.5181] [ 4267] [depth= 19] . ( 27 sec) [ -19781.6652] [ 4268] [depth= 2] . ( 28 sec) [ -19713.4840] [ 4262] [depth= 1] . ( 28 sec) [ -19559.2482] [ 4266] [depth= 6] . ( 28 sec) [ -19465.7509] [ 4208] [depth= 4] . ( 29 sec) [ -19370.7323] [ 4203] [depth= 3] . ( 29 sec) [ -19353.8598] [ 4205] [depth= 1] . ( 29 sec) [ -19348.0715] [ 4209] [depth= 2] . ( 29 sec) [ -19242.5877] [ 4182] [depth= 3] . ( 29 sec) [ -19233.7043] [ 4172] [depth= 1] . ( 30 sec) [ -18758.0497] [ 4113] [depth= 13] . ( 30 sec) [ -18533.6918] [ 4011] [depth= 20] . ( 30 sec) [ -18375.8558] [ 3927] [depth= 6] . ( 31 sec) [ -18324.3344] [ 3896] [depth= 1] . ( 31 sec) [ -18299.8495] [ 3895] [depth= 1] . ( 31 sec) [ -18275.6271] [ 3892] [depth= 2] . ( 31 sec) [ -18121.2759] [ 3885] [depth= 5] . ( 32 sec) [ -18055.8304] [ 3881] [depth= 2] . ( 32 sec) [ -18019.4039] [ 3873] [depth= 13] . ( 32 sec) [ -17974.2893] [ 3873] [depth= 2] . ( 32 sec) [ -17895.3620] [ 3836] [depth= 10] . ( 34 sec) [ -17661.0793] [ 3780] [depth= 2] . ( 34 sec) [ -17608.4579] [ 3772] [depth= 1] . ( 34 sec) [ -17595.5022] [ 3772] [depth= 1] . ( 35 sec) [ -17562.5154] [ 3772] [depth= 3] . ( 35 sec) [ -17493.9334] [ 3779] [depth= 2] . ( 35 sec) [ -17471.3573] [ 3780] [depth= 7] . ( 35 sec) [ -17438.1448] [ 3784] [depth= 1] . ( 36 sec) [ -17425.7025] [ 3761] [depth= 4] . ( 36 sec) [ -17389.0345] [ 3761] [depth= 1] . ( 36 sec) [ -17339.0959] [ 3770] [depth= 2] . ( 36 sec) [ -17137.4571] [ 3713] [depth= 2] . ( 36 sec) [ -17064.1917] [ 3712] [depth= 1] . ( 37 sec) [ -17047.0782] [ 3712] [depth= 2] . ( 37 sec) [ -17031.6069] [ 3707] [depth= 2] . ( 37 sec) [ -16853.1454] [ 3632] [depth= 1] . ( 37 sec) [ -16819.4156] [ 3625] [depth= 1] . ( 39 sec) [ -16793.8750] [ 3627] [depth= 6] . ( 39 sec) [ -16774.8581] [ 3627] [depth= 1] . ( 39 sec) [ -16755.5844] [ 3626] [depth= 8] . ( 40 sec) [ -16740.7407] [ 3626] [depth= 3] . ( 40 sec) [ -16734.6450] [ 3625] [depth= 8] . ( 40 sec) [ -16732.4352] [ 3625] [depth= 3] . ( 40 sec) [ -16559.2025] [ 3571] [depth= 1] . ( 41 sec) [ -16522.3096] [ 3567] [depth= 2] . ( 41 sec) [ -16476.7182] [ 3564] [depth= 1] . ( 41 sec) [ -16361.6042] [ 3547] [depth= 6] . ( 42 sec) [ -16358.0909] [ 3547] [depth= 2] . ( 42 sec) [ -16351.8953] [ 3547] [depth= 4] . ( 42 sec) [ -16351.7195] [ 3547] [depth= 5] . ( 42 sec) [ -16345.2870] [ 3546] [depth= 4] . ( 43 sec) [ -16308.0435] [ 3460] [depth= 14] . ( 43 sec) [ -16238.0160] [ 3460] [depth= 1] . ( 43 sec) [ -16209.3164] [ 3467] [depth= 1] . ( 43 sec) [ -16170.5813] [ 3469] [depth= 1] . ( 43 sec) [ -16100.5524] [ 3456] [depth= 3] . ( 44 sec) [ -16059.8812] [ 3452] [depth= 3] . ( 44 sec) [ -16031.0451] [ 3449] [depth= 2] . ( 44 sec) [ -16030.4896] [ 3449] [depth= 2] . ( 45 sec) [ -16029.4264] [ 3449] [depth= 1] . ( 45 sec) [ -15994.7290] [ 3444] [depth= 5] . ( 45 sec) [ -15778.3793] [ 3351] [depth= 4] . ( 46 sec) [ -15769.1251] [ 3348] [depth= 1] . ( 46 sec) [ -15767.2708] [ 3347] [depth= 7] . ( 48 sec) [ -15718.1330] [ 3327] [depth= 1] . ( 48 sec) [ -15710.7368] [ 3330] [depth= 7] . ( 48 sec) [ -15688.6081] [ 3330] [depth= 2] . ( 49 sec) [ -15686.0341] [ 3331] [depth= 1] . ( 49 sec) [ -15657.6161] [ 3331] [depth= 5] . ( 51 sec) [ -15162.1455] [Branch lengths ] . ( 55 sec) [ -15118.9666] [GTR parameters ] . ( 56 sec) [ -15118.9315] [Alpha ][ 0.507059] . ( 56 sec) [ -15096.5736] [ 3313] [depth= 5] . ( 56 sec) [ -15073.8664] [ 3307] [depth= 1] . ( 59 sec) [ -15073.7018] [ 3307] [depth= 2] . ( 63 sec) [ -15072.3491] [ 3309] [depth= 1] . ( 63 sec) [ -15072.2563] [ 3304] [depth= 1] . ( 69 sec) [ -15072.1214] [ 3309] [depth= 1] . ( 69 sec) [ -15072.0192] [ 3307] [depth= 1] . ( 71 sec) [ -15056.6744] [ 3294] [depth= 4] . ( 71 sec) [ -15043.9335] [ 3276] [depth= 2] . ( 71 sec) [ -15043.8556] [ 3276] [depth= 1] . ( 72 sec) [ -15042.8179] [ 3276] [depth= 1] . ( 74 sec) [ -15041.5135] [ 3274] [depth= 6] . ( 74 sec) [ -15039.6354] [ 3274] [depth= 2] . ( 78 sec) [ -15039.6217] [ 3274] [depth= 2] . ( 78 sec) [ -15039.1720] [ 3273] [depth= 1] . ( 79 sec) [ -15038.7223] [ 3272] [depth= 1] . ( 80 sec) [ -15025.8748] [ 3260] [depth= 2] . ( 83 sec) [ -15020.6909] [ 3268] [depth= 1] . ( 85 sec) [ -15016.3929] [ 3267] [depth= 4] . ( 85 sec) [ -15016.2640] [ 3267] [depth= 1] . ( 89 sec) [ -15016.2043] [ 3268] [depth= 1] . ( 90 sec) [ -15014.5833] [ 3260] [depth= 1] . ( 91 sec) [ -15014.4996] [ 3259] [depth= 1] . ( 93 sec) [ -15008.5541] [ 3252] [depth= 5] . ( 94 sec) [ -15008.0825] [ 3252] [depth= 2] . ( 95 sec) [ -15002.8658] [ 3218] [depth= 11] . ( 95 sec) [ -15002.7561] [ 3218] [depth= 3] . ( 96 sec) [ -15002.6293] [ 3218] [depth= 2] . ( 96 sec) [ -15001.8376] [ 3221] [depth= 1] . ( 97 sec) [ -15001.0500] [ 3222] [depth= 1] . ( 97 sec) [ -15001.0109] [ 3222] [depth= 3] . ( 98 sec) [ -14999.0892] [ 3222] [depth= 1] . ( 98 sec) [ -14999.0419] [ 3222] [depth= 1] . ( 99 sec) [ -14999.0315] [ 3222] [depth= 2] . ( 99 sec) [ -14997.6202] [ 3219] [depth= 2] . ( 101 sec) [ -14997.5868] [ 3219] [depth= 1] . ( 102 sec) [ -14997.5510] [ 3219] [depth= 3] . ( 102 sec) [ -14997.4526] [ 3219] [depth= 5] . ( 105 sec) [ -14997.4377] [ 3219] [depth= 4] . ( 105 sec) [ -14997.3527] [ 3219] [depth= 2] . ( 105 sec) [ -14990.6017] [ 3208] [depth= 1] . ( 109 sec) [ -14988.0310] [ 3208] [depth= 1] . ( 112 sec) [ -14988.0144] [ 3208] [depth= 1] . ( 114 sec) [ -14987.5745] [ 3212] [depth= 1] . ( 114 sec) [ -14985.6577] [ 3212] [depth= 4] . ( 115 sec) [ -14983.1179] [ 3212] [depth= 5] . ( 117 sec) [ -14945.5445] [Branch lengths ] . ( 120 sec) [ -14945.3369] [GTR parameters ] . ( 121 sec) [ -14944.1388] [Alpha ][ 0.544642] . ( 127 sec) [ -14942.8060] [ 3191] [depth= 1] . ( 136 sec) [ -14941.7723] [ 3191] [depth= 1] . ( 139 sec) [ -14940.5261] [ 3191] [depth= 6] . ( 150 sec) [ -14940.5128] [ 3191] [depth= 1] . ( 160 sec) [ -14938.4930] [ 3194] [depth= 1] . ( 160 sec) [ -14938.4170] [ 3194] [depth= 5] . ( 163 sec) [ -14938.3954] [ 3194] [depth= 1] . ( 165 sec) [ -14938.3348] [ 3194] [depth= 1] . ( 187 sec) [ -14932.3145] [Branch lengths ] . ( 190 sec) [ -14932.2043] [GTR parameters ] . ( 191 sec) [ -14932.0072] [Alpha ][ 0.560688] . ( 192 sec) [ -14931.8643] [ 3198] [depth= 2] . ( 199 sec) [ -14931.8131] [ 3198] [depth= 1] . ( 209 sec) [ -14931.7915] [ 3198] [depth= 1] . ( 234 sec) [ -14931.7781] [ 3198] [depth= 2] . ( 259 sec) [ -14929.6510] [Branch lengths ] . ( 261 sec) [ -14929.6357] [GTR parameters ] . ( 261 sec) [ -14929.6128] [Alpha ][ 0.566476] . ( 331 sec) [ -14928.4037] [Branch lengths ] . ( 372 sec) [ -14928.0515] [ 3205] [depth= 1] . ( 403 sec) [ -14927.3318] [ 3217] [depth= 1] . ( 412 sec) [ -14927.3024] [ 3217] [depth= 1] . ( 477 sec) [ -14924.2592] [Branch lengths ] . ( 478 sec) [ -14924.2384] [GTR parameters ] . ( 479 sec) [ -14924.2307] [Alpha ][ 0.563049] . ( 632 sec) [ -14923.9119] [Branch lengths ] . ( 632 sec) [ -14923.9119] [Topology ] . ( 635 sec) [ -14923.8789] [Topology ] . ( 639 sec) [ -14923.8667] [Topology ] . ( 642 sec) [ -14923.8610] [Topology ] . ( 646 sec) [ -14923.8581] [Topology ] . ( 649 sec) [ -14923.8566] [Topology ] . ( 652 sec) [ -14923.8558] [Topology ] . ( 654 sec) [ -14923.8531] [GTR parameters ] . ( 655 sec) [ -14923.8494] [Alpha ][ 0.565371] . ( 655 sec) [ -14923.8494] [Topology ] . ( 658 sec) [ -14923.8473] [Topology ] . ( 662 sec) [ -14923.8464] [Topology ] . ( 662 sec) [ -14923.8463] [GTR parameters ] . ( 663 sec) [ -14923.8460] [Alpha ][ 0.565937] . ( 663 sec) [ -14923.8460] [Topology ] . ( 666 sec) [ -14923.8453] [Topology ] . ( 667 sec) [ -14923.8453] [GTR parameters ] . ( 667 sec) [ -14923.8453] [Alpha ][ 0.566503] . Checking for NNIs, optimizing five branches... . ( 697 sec) [ -14923.8446] [Topology ] . Checking for NNIs, optimizing five branches... . ( 727 sec) [ -14923.8444] [Topology ] . Checking for NNIs, optimizing five branches... . ( 757 sec) [ -14923.8364] [Topology ] . Checking for NNIs, optimizing five branches... . ( 787 sec) [ -14923.8363] [Topology ] . Checking for NNIs, optimizing five branches... . ( 817 sec) [ -14923.8361] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -14923.836141. . [Random start 5/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 5 sec) [ -47651.0477] [GTR parameters ] . ( 5 sec) [ -46438.6349] [Alpha ][ 0.500960] . ( 6 sec) [ -45758.6238] [ 8229] [depth= 7] . ( 6 sec) [ -44585.9667] [ 8034] [depth= 10] . ( 6 sec) [ -41876.3867] [ 7871] [depth= 7] . ( 6 sec) [ -41542.0175] [ 7864] [depth= 2] . ( 7 sec) [ -41333.8854] [ 7769] [depth= 6] . ( 7 sec) [ -41188.8870] [ 7743] [depth= 17] . ( 7 sec) [ -40887.5064] [ 7697] [depth= 12] . ( 7 sec) [ -40553.7264] [ 7672] [depth= 1] . ( 8 sec) [ -40369.4558] [ 7562] [depth= 16] . ( 8 sec) [ -39927.1282] [ 7417] [depth= 10] . ( 8 sec) [ -39641.8314] [ 7387] [depth= 1] . ( 8 sec) [ -39186.6614] [ 7302] [depth= 8] . ( 8 sec) [ -38584.7947] [ 7245] [depth= 4] . ( 9 sec) [ -38515.5676] [ 7244] [depth= 1] . ( 9 sec) [ -38003.5086] [ 7246] [depth= 1] . ( 9 sec) [ -37998.8971] [ 7245] [depth= 2] . ( 9 sec) [ -37853.4870] [ 7240] [depth= 2] . ( 10 sec) [ -37475.7099] [ 7219] [depth= 1] . ( 10 sec) [ -36539.2629] [ 6961] [depth= 15] . ( 10 sec) [ -35651.8558] [ 6833] [depth= 3] . ( 10 sec) [ -35638.5822] [ 6834] [depth= 3] . ( 11 sec) [ -35603.9850] [ 6813] [depth= 4] . ( 11 sec) [ -35519.4194] [ 6807] [depth= 1] . ( 11 sec) [ -35454.7949] [ 6808] [depth= 1] . ( 11 sec) [ -35416.2694] [ 6806] [depth= 3] . ( 11 sec) [ -35152.8449] [ 6720] [depth= 13] . ( 12 sec) [ -34184.4495] [ 6562] [depth= 15] . ( 12 sec) [ -34057.7812] [ 6561] [depth= 5] . ( 12 sec) [ -33663.2580] [ 6531] [depth= 4] . ( 12 sec) [ -33482.2962] [ 6530] [depth= 12] . ( 13 sec) [ -33482.0141] [ 6530] [depth= 1] . ( 13 sec) [ -33465.0816] [ 6523] [depth= 1] . ( 13 sec) [ -32998.3138] [ 6495] [depth= 7] . ( 13 sec) [ -32929.6654] [ 6471] [depth= 6] . ( 14 sec) [ -32836.8353] [ 6412] [depth= 6] . ( 14 sec) [ -32631.4170] [ 6331] [depth= 9] . ( 14 sec) [ -32112.3527] [ 6189] [depth= 4] . ( 15 sec) [ -32100.4322] [ 6187] [depth= 1] . ( 15 sec) [ -32091.5418] [ 6174] [depth= 3] . ( 15 sec) [ -32090.3577] [ 6174] [depth= 1] . ( 15 sec) [ -31898.1811] [ 6172] [depth= 11] . ( 15 sec) [ -31849.2047] [ 6173] [depth= 6] . ( 16 sec) [ -31551.1145] [ 6075] [depth= 9] . ( 16 sec) [ -31302.7273] [ 6000] [depth= 6] . ( 16 sec) [ -31083.2693] [ 5940] [depth= 5] . ( 17 sec) [ -31010.8440] [ 5874] [depth= 9] . ( 17 sec) [ -30959.7406] [ 5874] [depth= 1] . ( 17 sec) [ -30678.9956] [ 5888] [depth= 6] . ( 17 sec) [ -30646.7243] [ 5888] [depth= 12] . ( 18 sec) [ -30498.3708] [ 5888] [depth= 13] . ( 18 sec) [ -30446.9554] [ 5888] [depth= 13] . ( 18 sec) [ -30171.4448] [ 5888] [depth= 11] . ( 18 sec) [ -30065.5653] [ 5829] [depth= 8] . ( 19 sec) [ -29648.8062] [ 5720] [depth= 8] . ( 19 sec) [ -29525.6140] [ 5708] [depth= 5] . ( 19 sec) [ -29166.1703] [ 5698] [depth= 1] . ( 19 sec) [ -29065.9436] [ 5657] [depth= 1] . ( 19 sec) [ -28676.9683] [ 5516] [depth= 12] . ( 20 sec) [ -28630.3249] [ 5514] [depth= 6] . ( 20 sec) [ -28379.0473] [ 5451] [depth= 2] . ( 20 sec) [ -27923.2902] [ 5389] [depth= 1] . ( 20 sec) [ -27061.9857] [ 5384] [depth= 10] . ( 20 sec) [ -26993.0610] [ 5342] [depth= 10] . ( 21 sec) [ -26733.8482] [ 5296] [depth= 11] . ( 21 sec) [ -26475.8171] [ 5178] [depth= 6] . ( 21 sec) [ -26395.6100] [ 5178] [depth= 1] . ( 21 sec) [ -25749.4509] [ 5175] [depth= 6] . ( 22 sec) [ -25690.8681] [ 5171] [depth= 2] . ( 22 sec) [ -25683.3880] [ 5171] [depth= 1] . ( 22 sec) [ -25679.8308] [ 5171] [depth= 1] . ( 22 sec) [ -25584.2341] [ 5170] [depth= 1] . ( 22 sec) [ -25410.9011] [ 5164] [depth= 1] . ( 23 sec) [ -25336.8241] [ 5116] [depth= 16] . ( 23 sec) [ -24804.7556] [ 5061] [depth= 8] . ( 23 sec) [ -24647.9392] [ 5016] [depth= 4] . ( 23 sec) [ -24384.4847] [ 4918] [depth= 14] . ( 24 sec) [ -24085.1457] [ 4912] [depth= 10] . ( 24 sec) [ -24084.0134] [ 4932] [depth= 1] . ( 24 sec) [ -23820.1126] [ 4704] [depth= 13] . ( 24 sec) [ -23798.8906] [ 4705] [depth= 1] . ( 25 sec) [ -23733.1545] [ 4699] [depth= 2] . ( 25 sec) [ -23654.1322] [ 4699] [depth= 7] . ( 25 sec) [ -23209.7542] [ 4634] [depth= 5] . ( 25 sec) [ -22455.8537] [ 4628] [depth= 3] . ( 25 sec) [ -22207.9579] [ 4511] [depth= 7] . ( 26 sec) [ -22153.2282] [ 4510] [depth= 4] . ( 26 sec) [ -22152.7127] [ 4506] [depth= 1] . ( 26 sec) [ -21458.7620] [ 4496] [depth= 2] . ( 26 sec) [ -21416.3759] [ 4411] [depth= 1] . ( 27 sec) [ -21218.7526] [ 4412] [depth= 2] . ( 27 sec) [ -20738.0547] [ 4306] [depth= 6] . ( 27 sec) [ -20553.9377] [ 4264] [depth= 8] . ( 28 sec) [ -20419.2631] [ 4254] [depth= 1] . ( 28 sec) [ -20401.3101] [ 4254] [depth= 6] . ( 28 sec) [ -20401.1333] [ 4253] [depth= 1] . ( 28 sec) [ -20383.2565] [ 4253] [depth= 1] . ( 28 sec) [ -19801.2082] [ 4201] [depth= 6] . ( 29 sec) [ -19771.3200] [ 4196] [depth= 1] . ( 29 sec) [ -19622.7930] [ 4173] [depth= 7] . ( 29 sec) [ -19619.1849] [ 4184] [depth= 1] . ( 30 sec) [ -19607.7344] [ 4184] [depth= 1] . ( 30 sec) [ -19605.1627] [ 4184] [depth= 4] . ( 30 sec) [ -19402.8028] [ 4118] [depth= 3] . ( 30 sec) [ -19202.2522] [ 4069] [depth= 3] . ( 31 sec) [ -18866.6943] [ 4053] [depth= 6] . ( 31 sec) [ -18730.5124] [ 4002] [depth= 1] . ( 31 sec) [ -18713.3700] [ 3979] [depth= 2] . ( 31 sec) [ -18684.4776] [ 3967] [depth= 1] . ( 31 sec) [ -18678.0670] [ 3956] [depth= 4] . ( 32 sec) [ -18632.5466] [ 3932] [depth= 1] . ( 32 sec) [ -18366.0503] [ 3912] [depth= 1] . ( 32 sec) [ -18347.8885] [ 3911] [depth= 2] . ( 32 sec) [ -18345.1405] [ 3911] [depth= 2] . ( 32 sec) [ -18330.9480] [ 3908] [depth= 2] . ( 33 sec) [ -18059.5618] [ 3810] [depth= 3] . ( 33 sec) [ -17859.6253] [ 3779] [depth= 8] . ( 33 sec) [ -17857.8088] [ 3779] [depth= 1] . ( 33 sec) [ -17845.8894] [ 3779] [depth= 3] . ( 34 sec) [ -17799.6916] [ 3727] [depth= 1] . ( 34 sec) [ -17551.1749] [ 3652] [depth= 6] . ( 34 sec) [ -17545.3995] [ 3652] [depth= 7] . ( 34 sec) [ -17534.3599] [ 3653] [depth= 1] . ( 35 sec) [ -17533.1648] [ 3653] [depth= 1] . ( 35 sec) [ -17514.2474] [ 3653] [depth= 3] . ( 35 sec) [ -17513.9436] [ 3653] [depth= 9] . ( 36 sec) [ -17512.9342] [ 3654] [depth= 7] . ( 36 sec) [ -17504.7302] [ 3652] [depth= 6] . ( 36 sec) [ -17482.1695] [ 3651] [depth= 7] . ( 37 sec) [ -17481.0155] [ 3651] [depth= 2] . ( 37 sec) [ -17477.2066] [ 3651] [depth= 3] . ( 37 sec) [ -17292.5450] [ 3607] [depth= 3] . ( 37 sec) [ -17057.5797] [ 3591] [depth= 1] . ( 37 sec) [ -17002.7690] [ 3577] [depth= 1] . ( 38 sec) [ -16998.7833] [ 3577] [depth= 1] . ( 38 sec) [ -16826.2602] [ 3526] [depth= 3] . ( 38 sec) [ -16639.6877] [ 3547] [depth= 6] . ( 39 sec) [ -16635.3107] [ 3546] [depth= 1] . ( 39 sec) [ -16589.8218] [ 3551] [depth= 3] . ( 39 sec) [ -16543.9081] [ 3551] [depth= 1] . ( 39 sec) [ -16519.8598] [ 3551] [depth= 7] . ( 40 sec) [ -16412.8367] [ 3511] [depth= 5] . ( 40 sec) [ -16393.2084] [ 3502] [depth= 1] . ( 40 sec) [ -16393.1794] [ 3502] [depth= 1] . ( 41 sec) [ -16313.2142] [ 3492] [depth= 1] . ( 41 sec) [ -16289.5221] [ 3492] [depth= 2] . ( 41 sec) [ -16283.1528] [ 3492] [depth= 1] . ( 42 sec) [ -16282.4543] [ 3492] [depth= 5] . ( 42 sec) [ -16282.1855] [ 3492] [depth= 1] . ( 42 sec) [ -16279.0390] [ 3492] [depth= 9] . ( 42 sec) [ -16211.4248] [ 3467] [depth= 2] . ( 43 sec) [ -16189.3650] [ 3473] [depth= 1] . ( 44 sec) [ -15429.1420] [Branch lengths ] . ( 50 sec) [ -15358.0881] [GTR parameters ] . ( 50 sec) [ -15356.6438] [Alpha ][ 0.466550] . ( 50 sec) [ -15346.3299] [ 3463] [depth= 12] . ( 52 sec) [ -15342.1273] [ 3462] [depth= 1] . ( 52 sec) [ -15336.5393] [ 3455] [depth= 3] . ( 53 sec) [ -15333.7123] [ 3455] [depth= 1] . ( 53 sec) [ -15332.7895] [ 3461] [depth= 9] . ( 54 sec) [ -15332.0353] [ 3460] [depth= 1] . ( 54 sec) [ -15324.2997] [ 3450] [depth= 7] . ( 55 sec) [ -15323.7990] [ 3450] [depth= 4] . ( 55 sec) [ -15323.5455] [ 3450] [depth= 5] . ( 55 sec) [ -15322.2597] [ 3450] [depth= 1] . ( 56 sec) [ -15316.7936] [ 3443] [depth= 1] . ( 56 sec) [ -15315.2660] [ 3443] [depth= 5] . ( 56 sec) [ -15312.4555] [ 3446] [depth= 1] . ( 57 sec) [ -15256.7975] [ 3343] [depth= 9] . ( 57 sec) [ -15245.1047] [ 3326] [depth= 3] . ( 57 sec) [ -15234.7446] [ 3325] [depth= 3] . ( 58 sec) [ -15234.2821] [ 3322] [depth= 1] . ( 58 sec) [ -15234.2528] [ 3322] [depth= 6] . ( 61 sec) [ -15230.0214] [ 3324] [depth= 2] . ( 61 sec) [ -15225.2217] [ 3315] [depth= 2] . ( 62 sec) [ -15219.0398] [ 3314] [depth= 2] . ( 62 sec) [ -15215.6443] [ 3308] [depth= 9] . ( 62 sec) [ -15199.8030] [ 3311] [depth= 1] . ( 63 sec) [ -15198.3367] [ 3311] [depth= 1] . ( 64 sec) [ -15198.0440] [ 3311] [depth= 2] . ( 65 sec) [ -15192.0407] [ 3309] [depth= 3] . ( 65 sec) [ -15191.8424] [ 3309] [depth= 3] . ( 66 sec) [ -15186.3509] [ 3308] [depth= 2] . ( 66 sec) [ -15186.2962] [ 3308] [depth= 3] . ( 67 sec) [ -15185.4149] [ 3306] [depth= 7] . ( 67 sec) [ -15184.5175] [ 3306] [depth= 7] . ( 67 sec) [ -15184.4870] [ 3306] [depth= 4] . ( 68 sec) [ -15184.4394] [ 3306] [depth= 7] . ( 68 sec) [ -15184.2590] [ 3306] [depth= 3] . ( 68 sec) [ -15182.9185] [ 3306] [depth= 1] . ( 69 sec) [ -15179.5394] [ 3281] [depth= 4] . ( 69 sec) [ -15163.5808] [ 3293] [depth= 2] . ( 69 sec) [ -15163.0173] [ 3293] [depth= 5] . ( 71 sec) [ -15162.5772] [ 3293] [depth= 2] . ( 71 sec) [ -15162.5597] [ 3294] [depth= 2] . ( 71 sec) [ -15161.8488] [ 3295] [depth= 1] . ( 72 sec) [ -15161.8294] [ 3295] [depth= 3] . ( 72 sec) [ -15161.6215] [ 3294] [depth= 4] . ( 73 sec) [ -15158.6012] [ 3294] [depth= 1] . ( 73 sec) [ -15156.8672] [ 3296] [depth= 1] . ( 73 sec) [ -15156.1218] [ 3295] [depth= 2] . ( 74 sec) [ -15156.0695] [ 3295] [depth= 2] . ( 74 sec) [ -15156.0001] [ 3295] [depth= 1] . ( 74 sec) [ -15135.6079] [ 3297] [depth= 1] . ( 75 sec) [ -15135.3608] [ 3297] [depth= 1] . ( 75 sec) [ -15134.6606] [ 3279] [depth= 2] . ( 76 sec) [ -15126.6165] [ 3282] [depth= 2] . ( 76 sec) [ -15120.7655] [ 3282] [depth= 1] . ( 77 sec) [ -15109.0367] [ 3272] [depth= 2] . ( 77 sec) [ -15107.2744] [ 3273] [depth= 5] . ( 78 sec) [ -15107.2191] [ 3273] [depth= 3] . ( 78 sec) [ -15106.1041] [ 3274] [depth= 1] . ( 79 sec) [ -15105.8754] [ 3274] [depth= 8] . ( 80 sec) [ -15105.4147] [ 3274] [depth= 1] . ( 81 sec) [ -15105.3558] [ 3274] [depth= 1] . ( 81 sec) [ -15105.2749] [ 3273] [depth= 3] . ( 81 sec) [ -15102.4717] [ 3274] [depth= 6] . ( 85 sec) [ -15102.3660] [ 3274] [depth= 6] . ( 85 sec) [ -15102.1846] [ 3274] [depth= 5] . ( 89 sec) [ -15102.1745] [ 3274] [depth= 1] . ( 91 sec) [ -15102.0904] [ 3274] [depth= 1] . ( 92 sec) [ -15102.0365] [ 3274] [depth= 1] . ( 92 sec) [ -15101.8159] [ 3274] [depth= 1] . ( 92 sec) [ -15101.8012] [ 3274] [depth= 2] . ( 94 sec) [ -15101.7610] [ 3274] [depth= 1] . ( 94 sec) [ -15101.4627] [ 3274] [depth= 1] . ( 94 sec) [ -15101.4378] [ 3274] [depth= 2] . ( 97 sec) [ -15101.3260] [ 3274] [depth= 2] . ( 97 sec) [ -15101.1694] [ 3274] [depth= 4] . ( 98 sec) [ -15101.0990] [ 3274] [depth= 1] . ( 98 sec) [ -15094.0010] [ 3274] [depth= 1] . ( 100 sec) [ -15057.5136] [Branch lengths ] . ( 103 sec) [ -15057.3626] [GTR parameters ] . ( 103 sec) [ -15055.0189] [Alpha ][ 0.513270] . ( 104 sec) [ -15054.8530] [ 3275] [depth= 1] . ( 105 sec) [ -15054.6288] [ 3275] [depth= 1] . ( 105 sec) [ -15054.5477] [ 3275] [depth= 1] . ( 109 sec) [ -15052.2724] [ 3274] [depth= 4] . ( 110 sec) [ -15040.5898] [ 3259] [depth= 2] . ( 110 sec) [ -15040.5568] [ 3259] [depth= 3] . ( 112 sec) [ -15040.2446] [ 3259] [depth= 1] . ( 112 sec) [ -15026.1280] [ 3217] [depth= 3] . ( 120 sec) [ -15021.3968] [ 3225] [depth= 1] . ( 121 sec) [ -15020.9623] [ 3216] [depth= 5] . ( 126 sec) [ -15020.9441] [ 3216] [depth= 1] . ( 127 sec) [ -14984.8513] [ 3215] [depth= 1] . ( 127 sec) [ -14983.9628] [ 3217] [depth= 1] . ( 134 sec) [ -14983.7524] [ 3218] [depth= 2] . ( 134 sec) [ -14972.4452] [ 3213] [depth= 1] . ( 136 sec) [ -14969.4944] [ 3211] [depth= 1] . ( 139 sec) [ -14968.9621] [ 3215] [depth= 1] . ( 139 sec) [ -14963.1075] [ 3211] [depth= 1] . ( 141 sec) [ -14961.9849] [ 3207] [depth= 1] . ( 144 sec) [ -14960.4330] [ 3207] [depth= 1] . ( 146 sec) [ -14960.2429] [ 3207] [depth= 1] . ( 149 sec) [ -14960.0233] [ 3207] [depth= 1] . ( 151 sec) [ -14959.8253] [ 3207] [depth= 2] . ( 166 sec) [ -14958.8326] [ 3210] [depth= 1] . ( 168 sec) [ -14937.8806] [Branch lengths ] . ( 171 sec) [ -14937.6843] [GTR parameters ] . ( 172 sec) [ -14936.6864] [Alpha ][ 0.547967] . ( 190 sec) [ -14935.8855] [ 3215] [depth= 7] . ( 196 sec) [ -14935.8428] [ 3215] [depth= 3] . ( 198 sec) [ -14935.7873] [ 3215] [depth= 1] . ( 203 sec) [ -14933.6840] [ 3212] [depth= 1] . ( 205 sec) [ -14933.6650] [ 3212] [depth= 1] . ( 206 sec) [ -14933.2866] [ 3216] [depth= 2] . ( 213 sec) [ -14932.7839] [ 3216] [depth= 1] . ( 239 sec) [ -14928.5109] [Branch lengths ] . ( 240 sec) [ -14928.4799] [GTR parameters ] . ( 240 sec) [ -14928.3465] [Alpha ][ 0.561688] . ( 300 sec) [ -14928.3351] [ 3216] [depth= 2] . ( 308 sec) [ -14927.4267] [Branch lengths ] . ( 311 sec) [ -14927.4146] [GTR parameters ] . ( 311 sec) [ -14927.3968] [Alpha ][ 0.566787] . ( 391 sec) [ -14926.9183] [ 3224] [depth= 1] . ( 459 sec) [ -14926.8434] [ 3224] [depth= 1] . ( 461 sec) [ -14924.0461] [Branch lengths ] . ( 464 sec) [ -14924.0382] [GTR parameters ] . ( 464 sec) [ -14924.0231] [Alpha ][ 0.562026] . ( 616 sec) [ -14923.3230] [Branch lengths ] . ( 616 sec) [ -14923.3230] [Topology ] . ( 619 sec) [ -14923.1793] [Topology ] . ( 623 sec) [ -14923.1218] [Topology ] . ( 626 sec) [ -14923.0962] [Topology ] . ( 630 sec) [ -14923.0845] [Topology ] . ( 633 sec) [ -14923.0789] [Topology ] . ( 636 sec) [ -14923.0763] [Topology ] . ( 638 sec) [ -14923.0730] [GTR parameters ] . ( 639 sec) [ -14923.0648] [Alpha ][ 0.565473] . ( 639 sec) [ -14923.0648] [Topology ] . ( 642 sec) [ -14923.0604] [Topology ] . ( 646 sec) [ -14923.0587] [Topology ] . ( 649 sec) [ -14923.0578] [Topology ] . ( 650 sec) [ -14923.0572] [GTR parameters ] . ( 651 sec) [ -14923.0565] [Alpha ][ 0.566477] . ( 651 sec) [ -14923.0565] [Topology ] . ( 654 sec) [ -14923.0556] [Topology ] . ( 655 sec) [ -14923.0556] [GTR parameters ] . ( 655 sec) [ -14923.0556] [Alpha ][ 0.566477] . Checking for NNIs, optimizing five branches... . ( 686 sec) [ -14922.9463] [Topology ] . Checking for NNIs, optimizing five branches... . ( 716 sec) [ -14922.9456] [Topology ] . Checking for NNIs, optimizing five branches... . ( 746 sec) [ -14922.9374] [Topology ] . Checking for NNIs, optimizing five branches... . ( 777 sec) [ -14922.9373] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -14922.937263. . Computing pairwise distances... . Building BioNJ tree... . Maximizing likelihood (using NNI moves)... . ( 7 sec) [ -15465.7212] [GTR parameters ] . ( 8 sec) [ -15431.9484] [Alpha ][ 0.613860] . ( 8 sec) [ -15431.9484] [Topology ] . ( 12 sec) [ -15123.7998] [Topology ] . ( 15 sec) [ -15045.1303] [Topology ] . ( 19 sec) [ -15019.2652] [Topology ] . ( 23 sec) [ -15009.7959] [Topology ] . ( 26 sec) [ -15006.3124] [Topology ] . ( 30 sec) [ -15003.2852] [Topology ] . ( 33 sec) [ -14997.0189] [Topology ] . ( 37 sec) [ -14981.6104] [Topology ] . ( 40 sec) [ -14966.8514] [Topology ] . ( 53 sec) [ -14941.8760] [GTR parameters ] . ( 53 sec) [ -14941.7245] [Alpha ][ 0.597689] . ( 53 sec) [ -14941.7245] [Topology ] . ( 57 sec) [ -14938.9688] [Topology ] . ( 60 sec) [ -14938.5298] [Topology ] . ( 64 sec) [ -14938.0933] [Topology ] . ( 67 sec) [ -14937.9609] [Topology ] . ( 70 sec) [ -14937.9156] [Topology ] . ( 74 sec) [ -14937.6606] [Topology ] . ( 77 sec) [ -14937.8851] [Topology ] . Moving backward . ( 78 sec) [ -14932.9840] [Topology ] . ( 81 sec) [ -14932.5999] [Topology ] . Checking for NNIs, optimizing five branches... . ( 116 sec) [ -14932.8775] [Topology ] . ( 122 sec) [ -14932.6234] [GTR parameters ] . ( 123 sec) [ -14932.3411] [Alpha ][ 0.576687] . ( 123 sec) [ -14932.3411] [Topology ] . ( 126 sec) [ -14931.4471] [Topology ] . ( 130 sec) [ -14931.6178] [Topology ] . Moving backward . ( 130 sec) [ -14931.3953] [Topology ] . ( 134 sec) [ -14931.7351] [Topology ] . Moving backward . ( 134 sec) [ -14931.3471] [Topology ] . ( 137 sec) [ -14931.4047] [Topology ] . Moving backward . ( 138 sec) [ -14931.3258] [Topology ] . ( 141 sec) [ -14931.5111] [Topology ] . Moving backward . ( 141 sec) [ -14931.3137] [Topology ] . Checking for NNIs, optimizing five branches... . ( 175 sec) [ -14930.6260] [Topology ] . ( 178 sec) [ -14930.6075] [GTR parameters ] . ( 178 sec) [ -14930.5855] [Alpha ][ 0.570794] . ( 178 sec) [ -14930.5855] [Topology ] . ( 182 sec) [ -14930.1129] [Topology ] . ( 185 sec) [ -14930.3959] [Topology ] . Moving backward . ( 185 sec) [ -14929.8056] [Topology ] . ( 189 sec) [ -14929.9694] [Topology ] . Moving backward . ( 189 sec) [ -14929.6610] [Topology ] . ( 193 sec) [ -14929.6374] [Topology ] . ( 196 sec) [ -14929.6416] [Topology ] . Moving backward . ( 196 sec) [ -14929.6332] [Topology ] . ( 200 sec) [ -14929.6352] [Topology ] . Moving backward . Checking for NNIs, optimizing five branches... . ( 230 sec) [ -14929.6291] [Topology ] . ( 235 sec) [ -14929.6260] [GTR parameters ] . ( 235 sec) [ -14929.6239] [Alpha ][ 0.568931] . ( 236 sec) [ -14929.6239] [Topology ] . ( 239 sec) [ -14929.6195] [Topology ] . ( 242 sec) [ -14929.6177] [Topology ] . ( 246 sec) [ -14929.6180] [Topology ] . Checking for NNIs, optimizing five branches... . ( 276 sec) [ -14929.6162] [Topology ] . ( 278 sec) [ -14929.6157] [GTR parameters ] . ( 279 sec) [ -14929.6154] [Alpha ][ 0.568261] . ( 279 sec) [ -14929.6154] [Topology ] . ( 282 sec) [ -14929.6146] [Topology ] . Checking for NNIs, optimizing five branches... . ( 312 sec) [ -14929.6140] [Topology ] . ( 314 sec) [ -14929.6139] [GTR parameters ] . ( 314 sec) [ -14929.6139] [Alpha ][ 0.568261] . ( 314 sec) [ -14929.6139] [Topology ] . ( 317 sec) [ -14929.6134] [Topology ] . Checking for NNIs, optimizing five branches... . ( 347 sec) [ -14929.6131] [Topology ] . Checking for NNIs, optimizing five branches... . ( 379 sec) [ -14929.6092] [Topology ] . Checking for NNIs, optimizing five branches... . ( 410 sec) [ -14929.6091] [Topology ] . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 449 sec) [ -15465.7212] [GTR parameters ] . ( 449 sec) [ -15431.9484] [Alpha ][ 0.613860] . ( 450 sec) [ -15431.3316] [ 3250] [depth= 1] . ( 452 sec) [ -15430.9760] [ 3252] [depth= 1] . ( 452 sec) [ -15430.5960] [ 3255] [depth= 1] . ( 452 sec) [ -15402.3780] [ 3252] [depth= 1] . ( 453 sec) [ -15387.4679] [ 3269] [depth= 1] . ( 453 sec) [ -15376.8933] [ 3271] [depth= 1] . ( 453 sec) [ -15368.7103] [ 3289] [depth= 2] . ( 455 sec) [ -15360.7370] [ 3290] [depth= 1] . ( 455 sec) [ -15342.9301] [ 3286] [depth= 1] . ( 455 sec) [ -15342.2817] [ 3286] [depth= 1] . ( 456 sec) [ -15337.1367] [ 3286] [depth= 1] . ( 456 sec) [ -15328.5284] [ 3286] [depth= 1] . ( 457 sec) [ -15324.4261] [ 3286] [depth= 2] . ( 457 sec) [ -15299.4630] [ 3260] [depth= 2] . ( 457 sec) [ -15297.9546] [ 3260] [depth= 1] . ( 457 sec) [ -15226.6796] [ 3246] [depth= 2] . ( 458 sec) [ -15223.5302] [ 3246] [depth= 1] . ( 458 sec) [ -15219.9536] [ 3249] [depth= 1] . ( 459 sec) [ -15218.0654] [ 3246] [depth= 1] . ( 459 sec) [ -15215.1312] [ 3242] [depth= 1] . ( 460 sec) [ -15207.1548] [ 3241] [depth= 1] . ( 460 sec) [ -15178.2131] [ 3238] [depth= 1] . ( 460 sec) [ -15177.5438] [ 3238] [depth= 1] . ( 461 sec) [ -15176.6334] [ 3238] [depth= 1] . ( 461 sec) [ -15176.6148] [ 3238] [depth= 5] . ( 461 sec) [ -15174.4771] [ 3238] [depth= 7] . ( 462 sec) [ -15169.9818] [ 3237] [depth= 5] . ( 462 sec) [ -15168.4855] [ 3237] [depth= 3] . ( 462 sec) [ -15159.0500] [ 3237] [depth= 1] . ( 463 sec) [ -15152.2342] [ 3236] [depth= 1] . ( 463 sec) [ -15149.8557] [ 3237] [depth= 3] . ( 463 sec) [ -15149.4975] [ 3237] [depth= 2] . ( 464 sec) [ -15149.1815] [ 3237] [depth= 2] . ( 465 sec) [ -15144.5080] [ 3237] [depth= 1] . ( 466 sec) [ -15144.2312] [ 3236] [depth= 2] . ( 466 sec) [ -15141.4441] [ 3236] [depth= 4] . ( 467 sec) [ -15138.9343] [ 3236] [depth= 3] . ( 467 sec) [ -15137.4369] [ 3237] [depth= 2] . ( 467 sec) [ -15134.6409] [ 3240] [depth= 1] . ( 468 sec) [ -15125.1651] [ 3247] [depth= 1] . ( 468 sec) [ -15124.8924] [ 3268] [depth= 1] . ( 468 sec) [ -15121.4875] [ 3271] [depth= 1] . ( 469 sec) [ -15111.7082] [ 3268] [depth= 1] . ( 469 sec) [ -15110.3915] [ 3259] [depth= 1] . ( 470 sec) [ -15110.3108] [ 3259] [depth= 1] . ( 470 sec) [ -15106.8144] [ 3267] [depth= 1] . ( 471 sec) [ -15104.1425] [ 3268] [depth= 1] . ( 471 sec) [ -15089.5291] [ 3266] [depth= 1] . ( 472 sec) [ -15087.3993] [ 3266] [depth= 1] . ( 473 sec) [ -15086.2127] [ 3267] [depth= 1] . ( 473 sec) [ -15075.8849] [ 3255] [depth= 2] . ( 473 sec) [ -15074.6378] [ 3256] [depth= 1] . ( 478 sec) [ -15072.7604] [ 3256] [depth= 1] . ( 478 sec) [ -15072.6756] [ 3256] [depth= 1] . ( 482 sec) [ -15071.9309] [ 3255] [depth= 2] . ( 483 sec) [ -15066.7065] [ 3254] [depth= 4] . ( 483 sec) [ -15066.6527] [ 3254] [depth= 2] . ( 485 sec) [ -15066.6317] [ 3254] [depth= 3] . ( 485 sec) [ -15066.4662] [ 3254] [depth= 1] . ( 486 sec) [ -15066.4475] [ 3254] [depth= 2] . ( 486 sec) [ -15065.8339] [ 3254] [depth= 2] . ( 487 sec) [ -15065.7142] [ 3254] [depth= 2] . ( 490 sec) [ -15065.4899] [ 3254] [depth= 2] . ( 491 sec) [ -15065.4663] [ 3254] [depth= 1] . ( 491 sec) [ -15065.4080] [ 3254] [depth= 2] . ( 493 sec) [ -15065.3606] [ 3254] [depth= 5] . ( 499 sec) [ -14985.5307] [Branch lengths ] . ( 507 sec) [ -14972.2412] [GTR parameters ] . ( 508 sec) [ -14972.0099] [Alpha ][ 0.593758] . ( 508 sec) [ -14971.2118] [ 3252] [depth= 1] . ( 510 sec) [ -14969.6020] [ 3242] [depth= 1] . ( 512 sec) [ -14964.8776] [ 3239] [depth= 1] . ( 512 sec) [ -14963.6740] [ 3215] [depth= 1] . ( 512 sec) [ -14955.9309] [ 3219] [depth= 2] . ( 515 sec) [ -14955.9034] [ 3219] [depth= 1] . ( 516 sec) [ -14955.8487] [ 3219] [depth= 1] . ( 525 sec) [ -14955.8278] [ 3219] [depth= 2] . ( 529 sec) [ -14955.7823] [ 3219] [depth= 1] . ( 530 sec) [ -14955.5209] [ 3219] [depth= 1] . ( 531 sec) [ -14953.5216] [ 3219] [depth= 2] . ( 531 sec) [ -14953.4906] [ 3219] [depth= 5] . ( 534 sec) [ -14952.2332] [ 3216] [depth= 1] . ( 538 sec) [ -14949.0679] [ 3216] [depth= 1] . ( 538 sec) [ -14949.0018] [ 3216] [depth= 1] . ( 539 sec) [ -14948.7168] [ 3216] [depth= 1] . ( 539 sec) [ -14948.6794] [ 3216] [depth= 1] . ( 542 sec) [ -14948.4115] [ 3216] [depth= 1] . ( 542 sec) [ -14948.2911] [ 3216] [depth= 1] . ( 549 sec) [ -14948.1888] [ 3216] [depth= 1] . ( 570 sec) [ -14936.0711] [Branch lengths ] . ( 575 sec) [ -14935.1236] [GTR parameters ] . ( 576 sec) [ -14935.0638] [Alpha ][ 0.583612] . ( 583 sec) [ -14935.0222] [ 3216] [depth= 1] . ( 588 sec) [ -14935.0078] [ 3216] [depth= 2] . ( 592 sec) [ -14934.9974] [ 3216] [depth= 3] . ( 638 sec) [ -14932.5067] [Branch lengths ] . ( 643 sec) [ -14932.4659] [GTR parameters ] . ( 643 sec) [ -14932.4100] [Alpha ][ 0.574091] . ( 706 sec) [ -14931.9789] [Branch lengths ] . ( 731 sec) [ -14930.9015] [ 3215] [depth= 2] . ( 777 sec) [ -14929.9518] [ 3224] [depth= 2] . ( 848 sec) [ -14928.7571] [Branch lengths ] . ( 854 sec) [ -14928.7327] [GTR parameters ] . ( 854 sec) [ -14928.7187] [Alpha ][ 0.569395] . ( 998 sec) [ -14928.6317] [Branch lengths ] . ( 998 sec) [ -14928.6317] [Topology ] . ( 1002 sec) [ -14928.2402] [Topology ] . ( 1005 sec) [ -14926.2670] [Topology ] . ( 1009 sec) [ -14922.4720] [Topology ] . ( 1012 sec) [ -14921.7838] [Topology ] . ( 1016 sec) [ -14921.6095] [Topology ] . ( 1019 sec) [ -14921.5273] [Topology ] . ( 1020 sec) [ -14921.5272] [GTR parameters ] . ( 1021 sec) [ -14921.5249] [Alpha ][ 0.567474] . ( 1021 sec) [ -14921.5249] [Topology ] . ( 1024 sec) [ -14921.4776] [Topology ] . ( 1028 sec) [ -14921.4501] [Topology ] . ( 1031 sec) [ -14921.4344] [Topology ] . ( 1035 sec) [ -14921.4271] [Topology ] . ( 1038 sec) [ -14921.4301] [Topology ] . Moving backward . ( 1038 sec) [ -14921.4225] [Topology ] . ( 1042 sec) [ -14921.4202] [Topology ] . ( 1043 sec) [ -14921.4201] [GTR parameters ] . ( 1043 sec) [ -14921.4201] [Alpha ][ 0.567474] . ( 1043 sec) [ -14921.4201] [Topology ] . ( 1047 sec) [ -14921.4253] [Topology ] . Moving backward . ( 1047 sec) [ -14921.4171] [Topology ] . ( 1051 sec) [ -14921.4168] [Topology ] . ( 1054 sec) [ -14921.4126] [GTR parameters ] . ( 1054 sec) [ -14921.4126] [Alpha ][ 0.567474] . ( 1055 sec) [ -14921.4126] [Topology ] . ( 1058 sec) [ -14921.4180] [Topology ] . Moving backward . ( 1058 sec) [ -14921.4104] [Topology ] . ( 1062 sec) [ -14921.4109] [Topology ] . ( 1063 sec) [ -14921.4109] [GTR parameters ] . ( 1064 sec) [ -14921.4109] [Alpha ][ 0.567474] . ( 1064 sec) [ -14921.4109] [Topology ] . ( 1067 sec) [ -14921.4162] [Topology ] . Moving backward . ( 1068 sec) [ -14921.4093] [Topology ] . ( 1071 sec) [ -14921.4101] [Topology ] . ( 1072 sec) [ -14921.4100] [GTR parameters ] . ( 1073 sec) [ -14921.4100] [Alpha ][ 0.567474] . Checking for NNIs, optimizing five branches... . ( 1104 sec) [ -14921.3056] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1136 sec) [ -14921.3024] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -14929.609064 . Log likelihood obtained after SPR moves : -14921.302358 . Log likelihood of the current tree: -14921.302358. . Printing the most likely tree in file 'nucleic_M2932_68x1712_2006.phy_phyml_tree.txt'... . Best log likelihood : -14921.302358 . Time used 0h19m28s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 5165.69user 0.00system 1:29:00elapsed 96%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps