.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1377_19x1566_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : yes . Number of random starting trees : 5 . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 921 patterns found. (out of a total of 1566 sites) . 698 sites without polymorphism (44.57%). . [Random start 1/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . This analysis requires at least 39Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -21095.7121] [Alpha ][ 0.500960] . ( 3 sec) [ -20920.4902] [ 2924] [depth= 6] . ( 3 sec) [ -20223.2051] [ 2883] [depth= 4] . ( 4 sec) [ -20171.7998] [ 2881] [depth= 1] . ( 4 sec) [ -19912.4371] [ 2860] [depth= 6] . ( 5 sec) [ -19830.9057] [ 2834] [depth= 3] . ( 6 sec) [ -19779.3443] [ 2823] [depth= 4] . ( 6 sec) [ -19618.4428] [ 2816] [depth= 2] . ( 7 sec) [ -19536.0116] [ 2794] [depth= 4] . ( 7 sec) [ -19447.6657] [ 2771] [depth= 1] . ( 8 sec) [ -19382.7856] [ 2763] [depth= 5] . ( 9 sec) [ -19366.6644] [ 2766] [depth= 1] . ( 9 sec) [ -18807.6727] [ 2637] [depth= 4] . ( 10 sec) [ -18805.7333] [ 2636] [depth= 7] . ( 11 sec) [ -18758.2556] [ 2640] [depth= 1] . ( 11 sec) [ -18633.8765] [ 2629] [depth= 3] . ( 12 sec) [ -18600.1302] [ 2619] [depth= 7] . ( 14 sec) [ -18562.8902] [ 2610] [depth= 4] . ( 15 sec) [ -18517.9607] [ 2601] [depth= 1] . ( 15 sec) [ -18515.3515] [ 2599] [depth= 3] . ( 16 sec) [ -18503.5568] [ 2595] [depth= 2] . ( 17 sec) [ -18027.8859] [ 2471] [depth= 5] . ( 19 sec) [ -18002.4199] [ 2467] [depth= 2] . ( 21 sec) [ -17999.3764] [ 2471] [depth= 2] . ( 21 sec) [ -17854.5906] [ 2453] [depth= 1] . ( 23 sec) [ -17647.1248] [ 2468] [depth= 1] . ( 25 sec) [ -17633.8274] [ 2470] [depth= 1] . ( 38 sec) [ -17584.7602] [Branch lengths ] . ( 39 sec) [ -17584.4521] [Alpha ][ 0.522768] . ( 41 sec) [ -17578.7279] [ 2472] [depth= 3] . ( 46 sec) [ -17577.6369] [ 2466] [depth= 2] . ( 47 sec) [ -17576.1934] [ 2460] [depth= 1] . ( 53 sec) [ -17574.6468] [ 2446] [depth= 1] . ( 70 sec) [ -17573.4260] [ 2449] [depth= 1] . ( 71 sec) [ -17572.6414] [ 2446] [depth= 1] . ( 79 sec) [ -17571.1226] [ 2448] [depth= 2] . ( 85 sec) [ -17562.1291] [Branch lengths ] . ( 86 sec) [ -17562.0721] [Alpha ][ 0.532584] . ( 108 sec) [ -17562.0620] [ 2450] [depth= 4] . ( 111 sec) [ -17559.6171] [ 2444] [depth= 2] . ( 131 sec) [ -17553.4143] [Branch lengths ] . ( 132 sec) [ -17553.4143] [Alpha ][ 0.532584] . ( 179 sec) [ -17553.1770] [Branch lengths ] . ( 180 sec) [ -17553.1770] [Topology ] . ( 183 sec) [ -17553.1700] [Topology ] . ( 186 sec) [ -17553.1687] [Topology ] . ( 189 sec) [ -17553.1683] [Topology ] . ( 190 sec) [ -17553.1681] [Alpha ][ 0.533117] . ( 190 sec) [ -17553.1681] [Topology ] . ( 193 sec) [ -17553.1679] [Topology ] . ( 194 sec) [ -17553.1679] [Alpha ][ 0.533117] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -17553.167882. . [Random start 2/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -20853.6244] [Alpha ][ 0.500960] . ( 2 sec) [ -20635.0323] [ 2905] [depth= 8] . ( 2 sec) [ -20029.2430] [ 2880] [depth= 5] . ( 4 sec) [ -19919.4315] [ 2860] [depth= 3] . ( 4 sec) [ -19849.6658] [ 2837] [depth= 2] . ( 5 sec) [ -19784.8907] [ 2831] [depth= 3] . ( 5 sec) [ -19742.0466] [ 2822] [depth= 2] . ( 6 sec) [ -19663.4048] [ 2818] [depth= 1] . ( 7 sec) [ -19618.3343] [ 2804] [depth= 1] . ( 7 sec) [ -19598.2178] [ 2790] [depth= 3] . ( 8 sec) [ -19578.0668] [ 2781] [depth= 1] . ( 8 sec) [ -19472.8076] [ 2757] [depth= 4] . ( 9 sec) [ -19466.1876] [ 2751] [depth= 2] . ( 10 sec) [ -19399.1631] [ 2748] [depth= 1] . ( 10 sec) [ -19397.1973] [ 2745] [depth= 1] . ( 11 sec) [ -19371.5148] [ 2736] [depth= 6] . ( 11 sec) [ -19350.6937] [ 2744] [depth= 2] . ( 12 sec) [ -19288.3373] [ 2731] [depth= 4] . ( 13 sec) [ -19217.9129] [ 2756] [depth= 1] . ( 14 sec) [ -18918.7481] [ 2624] [depth= 2] . ( 15 sec) [ -18867.9826] [ 2629] [depth= 2] . ( 17 sec) [ -18860.1241] [ 2629] [depth= 2] . ( 18 sec) [ -18859.7159] [ 2630] [depth= 2] . ( 18 sec) [ -18746.5809] [ 2609] [depth= 2] . ( 19 sec) [ -18725.3079] [ 2602] [depth= 2] . ( 19 sec) [ -18686.8222] [ 2609] [depth= 2] . ( 20 sec) [ -18667.6454] [ 2605] [depth= 3] . ( 21 sec) [ -18524.0249] [ 2605] [depth= 1] . ( 21 sec) [ -18457.7386] [ 2596] [depth= 1] . ( 22 sec) [ -18326.9952] [ 2502] [depth= 2] . ( 23 sec) [ -18282.5604] [ 2494] [depth= 1] . ( 25 sec) [ -18269.7732] [ 2488] [depth= 1] . ( 25 sec) [ -18205.7694] [ 2493] [depth= 1] . ( 26 sec) [ -17819.1789] [ 2484] [depth= 3] . ( 26 sec) [ -17751.0559] [ 2478] [depth= 5] . ( 29 sec) [ -17732.3404] [ 2478] [depth= 2] . ( 29 sec) [ -17714.9779] [ 2476] [depth= 4] . ( 30 sec) [ -17703.1905] [ 2475] [depth= 3] . ( 32 sec) [ -17635.9986] [Branch lengths ] . ( 32 sec) [ -17635.8341] [Alpha ][ 0.516519] . ( 34 sec) [ -17630.5085] [ 2474] [depth= 1] . ( 39 sec) [ -17629.7969] [ 2474] [depth= 1] . ( 46 sec) [ -17629.5332] [ 2474] [depth= 1] . ( 64 sec) [ -17625.8726] [ 2465] [depth= 3] . ( 67 sec) [ -17620.0677] [ 2447] [depth= 1] . ( 71 sec) [ -17619.2488] [ 2444] [depth= 3] . ( 72 sec) [ -17617.1734] [ 2444] [depth= 2] . ( 79 sec) [ -17601.0579] [Branch lengths ] . ( 79 sec) [ -17601.0107] [Alpha ][ 0.525263] . ( 128 sec) [ -17592.4261] [Branch lengths ] . ( 128 sec) [ -17592.4261] [Topology ] . ( 131 sec) [ -17570.0893] [Topology ] . ( 134 sec) [ -17556.0974] [Topology ] . ( 137 sec) [ -17553.7213] [Topology ] . ( 141 sec) [ -17553.3062] [Topology ] . ( 144 sec) [ -17553.2281] [Topology ] . ( 147 sec) [ -17553.2119] [Topology ] . ( 148 sec) [ -17553.1728] [Alpha ][ 0.533368] . ( 148 sec) [ -17553.1728] [Topology ] . ( 151 sec) [ -17553.1691] [Topology ] . ( 155 sec) [ -17553.1682] [Topology ] . ( 155 sec) [ -17553.1682] [Alpha ][ 0.533368] . ( 156 sec) [ -17553.1682] [Topology ] . ( 159 sec) [ -17553.1679] [Topology ] . ( 159 sec) [ -17553.1679] [Alpha ][ 0.533368] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -17553.167903. . [Random start 3/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -22337.3476] [Alpha ][ 0.500960] . ( 2 sec) [ -22109.6891] [ 2900] [depth= 6] . ( 2 sec) [ -21713.4279] [ 2899] [depth= 1] . ( 3 sec) [ -21709.7411] [ 2901] [depth= 1] . ( 3 sec) [ -21629.0755] [ 2882] [depth= 4] . ( 4 sec) [ -21567.0000] [ 2840] [depth= 2] . ( 5 sec) [ -21455.6534] [ 2833] [depth= 4] . ( 5 sec) [ -21345.6392] [ 2831] [depth= 1] . ( 6 sec) [ -19941.3820] [ 2824] [depth= 2] . ( 6 sec) [ -19902.0776] [ 2810] [depth= 2] . ( 7 sec) [ -19868.8325] [ 2807] [depth= 1] . ( 8 sec) [ -19510.3717] [ 2791] [depth= 4] . ( 8 sec) [ -19365.9305] [ 2804] [depth= 1] . ( 9 sec) [ -19269.5613] [ 2774] [depth= 2] . ( 9 sec) [ -19134.7798] [ 2742] [depth= 1] . ( 11 sec) [ -19108.0780] [ 2742] [depth= 3] . ( 12 sec) [ -19090.9820] [ 2739] [depth= 2] . ( 12 sec) [ -19077.9979] [ 2740] [depth= 2] . ( 13 sec) [ -19069.7949] [ 2736] [depth= 1] . ( 14 sec) [ -18725.8894] [ 2587] [depth= 4] . ( 15 sec) [ -18637.0258] [ 2567] [depth= 3] . ( 16 sec) [ -18619.6908] [ 2562] [depth= 3] . ( 17 sec) [ -18235.5565] [ 2491] [depth= 1] . ( 18 sec) [ -18223.9385] [ 2492] [depth= 1] . ( 18 sec) [ -18216.8102] [ 2492] [depth= 1] . ( 19 sec) [ -18206.5560] [ 2492] [depth= 1] . ( 20 sec) [ -18137.5069] [ 2490] [depth= 5] . ( 21 sec) [ -18128.3550] [ 2491] [depth= 5] . ( 22 sec) [ -18097.7685] [ 2483] [depth= 6] . ( 23 sec) [ -18090.3974] [ 2482] [depth= 5] . ( 24 sec) [ -17677.9523] [ 2467] [depth= 4] . ( 24 sec) [ -17676.1707] [ 2465] [depth= 2] . ( 25 sec) [ -17668.6324] [ 2458] [depth= 1] . ( 26 sec) [ -17633.1359] [ 2480] [depth= 5] . ( 28 sec) [ -17630.8691] [ 2482] [depth= 1] . ( 36 sec) [ -17593.6983] [Branch lengths ] . ( 37 sec) [ -17593.3536] [Alpha ][ 0.523797] . ( 39 sec) [ -17592.9444] [ 2480] [depth= 1] . ( 60 sec) [ -17592.7594] [ 2481] [depth= 2] . ( 61 sec) [ -17591.9426] [ 2446] [depth= 4] . ( 62 sec) [ -17591.0391] [ 2445] [depth= 1] . ( 62 sec) [ -17589.1389] [ 2448] [depth= 1] . ( 64 sec) [ -17588.1041] [ 2445] [depth= 1] . ( 69 sec) [ -17579.0518] [ 2460] [depth= 1] . ( 69 sec) [ -17571.1982] [ 2461] [depth= 2] . ( 72 sec) [ -17570.0485] [ 2461] [depth= 1] . ( 74 sec) [ -17563.3392] [Branch lengths ] . ( 75 sec) [ -17563.3143] [Alpha ][ 0.530243] . ( 78 sec) [ -17562.7978] [ 2461] [depth= 1] . ( 81 sec) [ -17560.3307] [ 2464] [depth= 1] . ( 93 sec) [ -17560.2546] [ 2465] [depth= 1] . ( 105 sec) [ -17555.3274] [ 2449] [depth= 1] . ( 133 sec) [ -17551.3454] [Branch lengths ] . ( 134 sec) [ -17551.3402] [Alpha ][ 0.533204] . ( 194 sec) [ -17551.1370] [Branch lengths ] . ( 194 sec) [ -17551.1370] [Topology ] . ( 197 sec) [ -17551.1247] [Topology ] . ( 201 sec) [ -17551.1216] [Topology ] . ( 204 sec) [ -17551.1202] [Topology ] . ( 208 sec) [ -17551.1196] [Topology ] . ( 208 sec) [ -17551.1196] [Alpha ][ 0.533737] . ( 208 sec) [ -17551.1196] [Topology ] . ( 212 sec) [ -17551.1193] [Topology ] . ( 212 sec) [ -17551.1193] [Alpha ][ 0.533737] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -17551.119318. . [Random start 4/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -22410.2673] [Alpha ][ 0.500960] . ( 2 sec) [ -21859.9999] [ 2908] [depth= 3] . ( 3 sec) [ -21629.3978] [ 2889] [depth= 6] . ( 3 sec) [ -21557.7450] [ 2884] [depth= 3] . ( 4 sec) [ -21304.9368] [ 2884] [depth= 4] . ( 5 sec) [ -21289.6788] [ 2883] [depth= 1] . ( 5 sec) [ -21253.3836] [ 2879] [depth= 3] . ( 6 sec) [ -20656.4898] [ 2869] [depth= 7] . ( 6 sec) [ -20547.4133] [ 2869] [depth= 3] . ( 7 sec) [ -19908.2492] [ 2874] [depth= 2] . ( 8 sec) [ -19822.0704] [ 2862] [depth= 1] . ( 8 sec) [ -19674.2707] [ 2825] [depth= 3] . ( 9 sec) [ -19602.1499] [ 2827] [depth= 3] . ( 9 sec) [ -19582.2501] [ 2820] [depth= 1] . ( 10 sec) [ -19573.2165] [ 2820] [depth= 1] . ( 11 sec) [ -19550.9128] [ 2814] [depth= 2] . ( 11 sec) [ -19090.1559] [ 2705] [depth= 5] . ( 12 sec) [ -19080.3509] [ 2701] [depth= 1] . ( 13 sec) [ -18693.9974] [ 2690] [depth= 3] . ( 14 sec) [ -18687.4916] [ 2686] [depth= 1] . ( 14 sec) [ -18349.7033] [ 2685] [depth= 1] . ( 15 sec) [ -18346.7149] [ 2678] [depth= 6] . ( 16 sec) [ -18315.9050] [ 2666] [depth= 5] . ( 16 sec) [ -18294.8391] [ 2665] [depth= 1] . ( 17 sec) [ -18237.4156] [ 2649] [depth= 1] . ( 18 sec) [ -17957.3824] [ 2508] [depth= 9] . ( 18 sec) [ -17788.0196] [ 2510] [depth= 1] . ( 19 sec) [ -17733.8521] [ 2501] [depth= 1] . ( 20 sec) [ -17731.6128] [ 2498] [depth= 1] . ( 22 sec) [ -17690.0653] [ 2473] [depth= 4] . ( 23 sec) [ -17665.8540] [ 2457] [depth= 1] . ( 25 sec) [ -17637.0886] [ 2449] [depth= 6] . ( 26 sec) [ -17635.9088] [ 2454] [depth= 2] . ( 27 sec) [ -17634.1886] [ 2457] [depth= 2] . ( 27 sec) [ -17631.8474] [ 2456] [depth= 2] . ( 28 sec) [ -17628.7987] [ 2456] [depth= 2] . ( 29 sec) [ -17621.9981] [ 2450] [depth= 5] . ( 30 sec) [ -17577.3134] [Branch lengths ] . ( 31 sec) [ -17576.7398] [Alpha ][ 0.530545] . ( 34 sec) [ -17576.3103] [ 2450] [depth= 1] . ( 40 sec) [ -17576.0794] [ 2446] [depth= 1] . ( 41 sec) [ -17572.4423] [ 2446] [depth= 2] . ( 42 sec) [ -17571.4824] [ 2447] [depth= 1] . ( 59 sec) [ -17569.6420] [ 2446] [depth= 1] . ( 63 sec) [ -17569.3125] [ 2448] [depth= 1] . ( 69 sec) [ -17567.6198] [ 2447] [depth= 4] . ( 70 sec) [ -17562.4540] [Branch lengths ] . ( 70 sec) [ -17562.4528] [Alpha ][ 0.531891] . ( 75 sec) [ -17557.7367] [ 2444] [depth= 3] . ( 78 sec) [ -17556.7243] [ 2446] [depth= 1] . ( 91 sec) [ -17554.5851] [ 2449] [depth= 1] . ( 102 sec) [ -17554.2225] [ 2449] [depth= 1] . ( 109 sec) [ -17552.7146] [ 2447] [depth= 1] . ( 111 sec) [ -17551.1704] [Branch lengths ] . ( 111 sec) [ -17551.1679] [Alpha ][ 0.533939] . ( 159 sec) [ -17551.1036] [Branch lengths ] . ( 159 sec) [ -17551.1036] [Topology ] . ( 163 sec) [ -17551.1017] [Topology ] . ( 166 sec) [ -17551.1013] [Topology ] . ( 167 sec) [ -17551.1013] [Alpha ][ 0.533939] . ( 167 sec) [ -17551.1013] [Topology ] . ( 170 sec) [ -17551.1011] [Topology ] . ( 171 sec) [ -17551.1011] [Alpha ][ 0.533939] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -17551.101120. . [Random start 5/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -20952.8597] [Alpha ][ 0.500960] . ( 2 sec) [ -20715.8230] [ 2917] [depth= 8] . ( 3 sec) [ -20042.1922] [ 2904] [depth= 10] . ( 3 sec) [ -20039.9895] [ 2900] [depth= 3] . ( 4 sec) [ -19893.4082] [ 2889] [depth= 3] . ( 4 sec) [ -19839.7392] [ 2875] [depth= 4] . ( 5 sec) [ -19775.5454] [ 2868] [depth= 3] . ( 5 sec) [ -19459.4137] [ 2842] [depth= 3] . ( 6 sec) [ -19101.9770] [ 2760] [depth= 1] . ( 7 sec) [ -18950.0107] [ 2711] [depth= 1] . ( 7 sec) [ -18892.1987] [ 2708] [depth= 1] . ( 8 sec) [ -18772.4052] [ 2692] [depth= 3] . ( 9 sec) [ -18732.1179] [ 2682] [depth= 3] . ( 9 sec) [ -18728.0201] [ 2681] [depth= 2] . ( 10 sec) [ -18653.6832] [ 2665] [depth= 1] . ( 11 sec) [ -18262.4949] [ 2637] [depth= 7] . ( 12 sec) [ -18172.8581] [ 2605] [depth= 4] . ( 12 sec) [ -18165.7346] [ 2601] [depth= 1] . ( 15 sec) [ -18153.4543] [ 2598] [depth= 1] . ( 15 sec) [ -18048.8003] [ 2595] [depth= 2] . ( 16 sec) [ -18019.5103] [ 2588] [depth= 1] . ( 17 sec) [ -17943.5370] [ 2560] [depth= 2] . ( 17 sec) [ -17926.8255] [ 2554] [depth= 1] . ( 18 sec) [ -17918.8338] [ 2553] [depth= 1] . ( 19 sec) [ -17719.6510] [ 2459] [depth= 1] . ( 21 sec) [ -17716.9014] [ 2458] [depth= 2] . ( 22 sec) [ -17705.4797] [ 2456] [depth= 1] . ( 28 sec) [ -17701.4006] [ 2459] [depth= 2] . ( 29 sec) [ -17700.4055] [ 2460] [depth= 1] . ( 30 sec) [ -17699.3090] [ 2459] [depth= 1] . ( 31 sec) [ -17666.7286] [ 2449] [depth= 3] . ( 32 sec) [ -17663.8127] [ 2445] [depth= 1] . ( 33 sec) [ -17576.9546] [Branch lengths ] . ( 34 sec) [ -17576.3034] [Alpha ][ 0.532543] . ( 35 sec) [ -17574.7839] [ 2443] [depth= 1] . ( 37 sec) [ -17571.6931] [ 2447] [depth= 3] . ( 38 sec) [ -17566.8200] [ 2443] [depth= 1] . ( 39 sec) [ -17564.5237] [ 2444] [depth= 1] . ( 64 sec) [ -17559.4994] [ 2444] [depth= 1] . ( 74 sec) [ -17553.4202] [Branch lengths ] . ( 75 sec) [ -17553.4202] [Alpha ][ 0.532543] . ( 123 sec) [ -17553.1913] [Branch lengths ] . ( 123 sec) [ -17553.1913] [Topology ] . ( 126 sec) [ -17553.1756] [Topology ] . ( 130 sec) [ -17553.1712] [Topology ] . ( 133 sec) [ -17553.1694] [Topology ] . ( 136 sec) [ -17553.1686] [Topology ] . ( 137 sec) [ -17553.1685] [Alpha ][ 0.533075] . ( 137 sec) [ -17553.1685] [Topology ] . ( 140 sec) [ -17553.1681] [Topology ] . ( 141 sec) [ -17553.1681] [Alpha ][ 0.533075] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -17553.168056. . Computing pairwise distances... . Building BioNJ tree... . Maximizing likelihood (using NNI moves)... . ( 2 sec) [ -17793.6885] [Alpha ][ 0.500960] . ( 2 sec) [ -17793.6885] [Topology ] . ( 5 sec) [ -17680.2591] [Topology ] . ( 8 sec) [ -17661.7294] [Topology ] . ( 12 sec) [ -17656.0697] [Topology ] . ( 15 sec) [ -17648.2077] [Topology ] . ( 18 sec) [ -17643.9261] [Topology ] . ( 21 sec) [ -17643.0631] [Topology ] . ( 24 sec) [ -17633.7399] [Topology ] . ( 28 sec) [ -17629.7436] [Topology ] . ( 31 sec) [ -17620.8479] [Topology ] . Checking for NNIs, optimizing five branches... . ( 63 sec) [ -17609.7171] [Topology ] . ( 63 sec) [ -17609.2110] [Alpha ][ 0.528546] . ( 64 sec) [ -17609.2110] [Topology ] . ( 67 sec) [ -17605.1469] [Topology ] . ( 70 sec) [ -17601.1654] [Topology ] . ( 73 sec) [ -17600.4781] [Topology ] . ( 77 sec) [ -17600.3854] [Topology ] . ( 80 sec) [ -17600.3683] [Topology ] . ( 83 sec) [ -17600.3645] [Topology ] . ( 86 sec) [ -17600.3635] [Topology ] . Checking for NNIs, optimizing five branches... . ( 114 sec) [ -17600.0824] [Topology ] . ( 115 sec) [ -17600.0748] [Alpha ][ 0.532088] . ( 115 sec) [ -17600.0748] [Topology ] . ( 118 sec) [ -17594.8402] [Topology ] . ( 122 sec) [ -17592.2125] [Topology ] . ( 125 sec) [ -17590.8005] [Topology ] . ( 128 sec) [ -17588.6849] [Topology ] . ( 132 sec) [ -17581.0510] [Topology ] . ( 135 sec) [ -17576.6491] [Topology ] . ( 138 sec) [ -17576.1519] [Topology ] . ( 141 sec) [ -17576.1165] [Topology ] . ( 144 sec) [ -17576.1127] [Topology ] . Checking for NNIs, optimizing five branches... . ( 175 sec) [ -17576.0929] [Alpha ][ 0.537844] . ( 175 sec) [ -17576.0929] [Topology ] . ( 178 sec) [ -17576.0925] [Topology ] . Checking for NNIs, optimizing five branches... . ( 206 sec) [ -17576.0925] [Alpha ][ 0.537844] . ( 206 sec) [ -17576.0925] [Topology ] . ( 209 sec) [ -17576.0925] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 264 sec) [ -17793.6885] [Alpha ][ 0.500960] . ( 266 sec) [ -17790.9930] [ 2484] [depth= 1] . ( 267 sec) [ -17789.5885] [ 2486] [depth= 1] . ( 269 sec) [ -17780.0007] [ 2470] [depth= 1] . ( 270 sec) [ -17748.4106] [ 2467] [depth= 4] . ( 272 sec) [ -17692.7793] [ 2457] [depth= 4] . ( 273 sec) [ -17683.5541] [ 2454] [depth= 3] . ( 274 sec) [ -17669.3304] [ 2456] [depth= 3] . ( 276 sec) [ -17666.8827] [ 2457] [depth= 1] . ( 277 sec) [ -17639.5784] [ 2450] [depth= 4] . ( 277 sec) [ -17637.8291] [ 2448] [depth= 1] . ( 278 sec) [ -17635.0257] [ 2451] [depth= 3] . ( 279 sec) [ -17630.9459] [ 2460] [depth= 1] . ( 283 sec) [ -17627.8661] [ 2457] [depth= 1] . ( 284 sec) [ -17626.4651] [ 2459] [depth= 1] . ( 297 sec) [ -17621.7974] [ 2460] [depth= 1] . ( 301 sec) [ -17593.2880] [Branch lengths ] . ( 302 sec) [ -17593.0826] [Alpha ][ 0.518577] . ( 305 sec) [ -17568.7357] [ 2451] [depth= 1] . ( 313 sec) [ -17568.0733] [ 2445] [depth= 3] . ( 315 sec) [ -17566.2837] [ 2446] [depth= 4] . ( 319 sec) [ -17563.1045] [ 2444] [depth= 1] . ( 340 sec) [ -17553.9193] [Branch lengths ] . ( 341 sec) [ -17553.8091] [Alpha ][ 0.531665] . ( 389 sec) [ -17553.2150] [Branch lengths ] . ( 389 sec) [ -17553.2150] [Topology ] . ( 392 sec) [ -17553.1839] [Topology ] . ( 396 sec) [ -17553.1753] [Topology ] . ( 399 sec) [ -17553.1719] [Topology ] . ( 402 sec) [ -17553.1703] [Topology ] . ( 405 sec) [ -17553.1696] [Topology ] . ( 406 sec) [ -17553.1685] [Alpha ][ 0.533014] . ( 406 sec) [ -17553.1685] [Topology ] . ( 410 sec) [ -17553.1681] [Topology ] . ( 410 sec) [ -17553.1681] [Alpha ][ 0.533014] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -17576.092483 . Log likelihood obtained after SPR moves : -17553.168074 . Log likelihood of the current tree: -17553.168074. . Printing the most likely tree in file 'proteic_M1377_19x1566_2003.phy_phyml_tree.txt'... . Best log likelihood : -17551.101120 . Time used 0h7m19s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 1442.61user 0.00system 24:23.30elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps