.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1378_18x1561_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : yes . Number of random starting trees : 5 . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 855 patterns found. (out of a total of 1561 sites) . 765 sites without polymorphism (49.01%). . [Random start 1/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . This analysis requires at least 34Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -20035.0455] [Alpha ][ 0.500960] . ( 2 sec) [ -19808.5782] [ 2576] [depth= 2] . ( 3 sec) [ -19379.8174] [ 2549] [depth= 7] . ( 3 sec) [ -19314.8841] [ 2535] [depth= 2] . ( 4 sec) [ -19314.0950] [ 2557] [depth= 5] . ( 4 sec) [ -19072.8470] [ 2551] [depth= 3] . ( 5 sec) [ -19044.2470] [ 2549] [depth= 4] . ( 5 sec) [ -18956.4583] [ 2549] [depth= 4] . ( 6 sec) [ -18399.0654] [ 2538] [depth= 4] . ( 6 sec) [ -18268.5106] [ 2495] [depth= 5] . ( 7 sec) [ -18232.1308] [ 2489] [depth= 4] . ( 8 sec) [ -18139.0928] [ 2492] [depth= 1] . ( 8 sec) [ -17911.4804] [ 2493] [depth= 2] . ( 8 sec) [ -17874.9062] [ 2488] [depth= 1] . ( 9 sec) [ -17738.4216] [ 2469] [depth= 1] . ( 10 sec) [ -17643.0625] [ 2437] [depth= 6] . ( 11 sec) [ -17636.8865] [ 2439] [depth= 1] . ( 11 sec) [ -16966.4885] [ 2437] [depth= 1] . ( 12 sec) [ -16962.4850] [ 2436] [depth= 3] . ( 13 sec) [ -16638.2643] [ 2297] [depth= 8] . ( 13 sec) [ -16627.0430] [ 2295] [depth= 6] . ( 14 sec) [ -16594.4859] [ 2283] [depth= 4] . ( 15 sec) [ -16571.0640] [ 2275] [depth= 5] . ( 16 sec) [ -16561.9716] [ 2273] [depth= 2] . ( 17 sec) [ -16556.2558] [ 2273] [depth= 4] . ( 18 sec) [ -16553.1884] [ 2273] [depth= 1] . ( 19 sec) [ -16137.4311] [ 2168] [depth= 2] . ( 19 sec) [ -16122.8800] [ 2149] [depth= 4] . ( 20 sec) [ -16111.7001] [ 2141] [depth= 1] . ( 21 sec) [ -16110.0027] [ 2143] [depth= 1] . ( 23 sec) [ -16071.1251] [ 2133] [depth= 5] . ( 24 sec) [ -16031.2209] [Branch lengths ] . ( 25 sec) [ -16030.2869] [Alpha ][ 0.464205] . ( 27 sec) [ -16026.7835] [ 2134] [depth= 3] . ( 31 sec) [ -16026.3565] [ 2133] [depth= 1] . ( 32 sec) [ -16024.7673] [ 2130] [depth= 1] . ( 33 sec) [ -16021.9064] [ 2131] [depth= 1] . ( 45 sec) [ -16021.3407] [ 2133] [depth= 1] . ( 53 sec) [ -16019.1632] [ 2131] [depth= 1] . ( 56 sec) [ -16016.7264] [Branch lengths ] . ( 56 sec) [ -16016.7263] [Alpha ][ 0.463741] . ( 95 sec) [ -16016.6532] [Branch lengths ] . ( 95 sec) [ -16016.6532] [Topology ] . ( 98 sec) [ -16016.6518] [Topology ] . ( 101 sec) [ -16016.6515] [Topology ] . ( 101 sec) [ -16016.6515] [Alpha ][ 0.463741] . ( 102 sec) [ -16016.6515] [Topology ] . ( 104 sec) [ -16016.6514] [Topology ] . ( 105 sec) [ -16016.6514] [Alpha ][ 0.463741] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -16016.651429. . [Random start 2/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -19426.5312] [Alpha ][ 0.500960] . ( 2 sec) [ -19035.7448] [ 2552] [depth= 2] . ( 2 sec) [ -18522.0217] [ 2539] [depth= 6] . ( 3 sec) [ -18381.8596] [ 2526] [depth= 2] . ( 4 sec) [ -18312.1208] [ 2506] [depth= 2] . ( 4 sec) [ -18223.7392] [ 2505] [depth= 1] . ( 5 sec) [ -17992.4630] [ 2494] [depth= 4] . ( 5 sec) [ -17960.5213] [ 2496] [depth= 1] . ( 6 sec) [ -17580.4421] [ 2397] [depth= 5] . ( 6 sec) [ -17569.8758] [ 2396] [depth= 1] . ( 7 sec) [ -17559.4955] [ 2399] [depth= 1] . ( 7 sec) [ -17551.9356] [ 2399] [depth= 2] . ( 8 sec) [ -17550.2590] [ 2394] [depth= 4] . ( 10 sec) [ -17531.5780] [ 2396] [depth= 2] . ( 10 sec) [ -17528.6341] [ 2392] [depth= 1] . ( 12 sec) [ -17454.2868] [ 2380] [depth= 5] . ( 16 sec) [ -17450.3307] [ 2384] [depth= 5] . ( 17 sec) [ -17446.4659] [ 2385] [depth= 1] . ( 17 sec) [ -17350.2846] [ 2356] [depth= 4] . ( 18 sec) [ -17227.1431] [ 2344] [depth= 3] . ( 19 sec) [ -16743.8131] [ 2297] [depth= 5] . ( 20 sec) [ -16582.7179] [ 2289] [depth= 4] . ( 20 sec) [ -16456.3116] [ 2267] [depth= 2] . ( 21 sec) [ -16453.9283] [ 2268] [depth= 1] . ( 22 sec) [ -16168.1071] [ 2153] [depth= 2] . ( 23 sec) [ -16156.1355] [ 2152] [depth= 2] . ( 23 sec) [ -16152.5853] [ 2151] [depth= 1] . ( 24 sec) [ -16134.8171] [ 2151] [depth= 3] . ( 25 sec) [ -16119.2834] [ 2147] [depth= 3] . ( 28 sec) [ -16119.0371] [ 2149] [depth= 3] . ( 30 sec) [ -16032.2851] [Branch lengths ] . ( 31 sec) [ -16031.1667] [Alpha ][ 0.460897] . ( 43 sec) [ -16029.8649] [ 2149] [depth= 2] . ( 44 sec) [ -16027.2779] [ 2151] [depth= 1] . ( 55 sec) [ -16023.8646] [ 2150] [depth= 3] . ( 58 sec) [ -16021.2357] [ 2150] [depth= 1] . ( 73 sec) [ -16018.2545] [Branch lengths ] . ( 73 sec) [ -16018.2508] [Alpha ][ 0.463108] . ( 136 sec) [ -16018.0770] [Branch lengths ] . ( 136 sec) [ -16018.0770] [Topology ] . ( 139 sec) [ -16018.0620] [Topology ] . ( 142 sec) [ -16018.0576] [Topology ] . ( 145 sec) [ -16018.0558] [Topology ] . ( 148 sec) [ -16018.0550] [Topology ] . ( 148 sec) [ -16018.0538] [Alpha ][ 0.464306] . ( 149 sec) [ -16018.0538] [Topology ] . ( 152 sec) [ -16018.0533] [Topology ] . ( 152 sec) [ -16018.0533] [Alpha ][ 0.464306] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -16018.053340. . [Random start 3/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -18816.1984] [Alpha ][ 0.500960] . ( 2 sec) [ -18616.7585] [ 2535] [depth= 4] . ( 2 sec) [ -18336.9341] [ 2511] [depth= 7] . ( 3 sec) [ -18311.4151] [ 2503] [depth= 2] . ( 4 sec) [ -18262.7266] [ 2501] [depth= 1] . ( 4 sec) [ -18194.2813] [ 2481] [depth= 2] . ( 5 sec) [ -18163.2937] [ 2488] [depth= 3] . ( 5 sec) [ -18130.6073] [ 2492] [depth= 1] . ( 6 sec) [ -18115.7683] [ 2487] [depth= 3] . ( 6 sec) [ -18084.8975] [ 2478] [depth= 2] . ( 7 sec) [ -18045.9113] [ 2471] [depth= 1] . ( 8 sec) [ -17898.2480] [ 2446] [depth= 2] . ( 8 sec) [ -17463.9338] [ 2359] [depth= 1] . ( 9 sec) [ -17357.6332] [ 2343] [depth= 6] . ( 9 sec) [ -16632.1492] [ 2210] [depth= 3] . ( 10 sec) [ -16617.6101] [ 2203] [depth= 5] . ( 10 sec) [ -16529.9219] [ 2208] [depth= 1] . ( 11 sec) [ -16467.1712] [ 2203] [depth= 2] . ( 11 sec) [ -16451.6437] [ 2189] [depth= 7] . ( 12 sec) [ -16436.8847] [ 2180] [depth= 6] . ( 14 sec) [ -16424.9961] [ 2178] [depth= 2] . ( 14 sec) [ -16408.2610] [ 2174] [depth= 2] . ( 15 sec) [ -16377.0992] [ 2167] [depth= 1] . ( 16 sec) [ -16216.0318] [ 2149] [depth= 1] . ( 16 sec) [ -16105.7853] [ 2138] [depth= 1] . ( 17 sec) [ -16099.3755] [ 2137] [depth= 1] . ( 21 sec) [ -16089.9606] [ 2134] [depth= 2] . ( 26 sec) [ -16028.8580] [Branch lengths ] . ( 26 sec) [ -16027.9261] [Alpha ][ 0.464157] . ( 28 sec) [ -16027.6480] [ 2131] [depth= 1] . ( 28 sec) [ -16027.0964] [ 2132] [depth= 4] . ( 49 sec) [ -16026.8816] [ 2131] [depth= 1] . ( 52 sec) [ -16023.8152] [ 2130] [depth= 3] . ( 56 sec) [ -16019.1535] [Branch lengths ] . ( 56 sec) [ -16019.1532] [Alpha ][ 0.463407] . ( 60 sec) [ -16018.0086] [ 2131] [depth= 1] . ( 93 sec) [ -16016.7035] [Branch lengths ] . ( 93 sec) [ -16016.7035] [Alpha ][ 0.463870] . ( 132 sec) [ -16016.6543] [Branch lengths ] . ( 133 sec) [ -16016.6543] [Topology ] . ( 135 sec) [ -16016.6522] [Topology ] . ( 138 sec) [ -16016.6517] [Topology ] . ( 139 sec) [ -16016.6517] [Alpha ][ 0.463870] . ( 139 sec) [ -16016.6517] [Topology ] . ( 142 sec) [ -16016.6515] [Topology ] . ( 142 sec) [ -16016.6515] [Alpha ][ 0.463870] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -16016.651506. . [Random start 4/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -18692.3484] [Alpha ][ 0.500960] . ( 2 sec) [ -18473.8289] [ 2424] [depth= 2] . ( 3 sec) [ -18091.8563] [ 2404] [depth= 6] . ( 3 sec) [ -17907.3695] [ 2380] [depth= 4] . ( 4 sec) [ -17766.6408] [ 2378] [depth= 2] . ( 4 sec) [ -17731.1865] [ 2366] [depth= 4] . ( 5 sec) [ -17689.0649] [ 2365] [depth= 1] . ( 6 sec) [ -17681.1327] [ 2363] [depth= 1] . ( 8 sec) [ -17673.5225] [ 2367] [depth= 7] . ( 8 sec) [ -17480.6029] [ 2340] [depth= 3] . ( 9 sec) [ -17376.1574] [ 2310] [depth= 1] . ( 10 sec) [ -17361.5451] [ 2309] [depth= 4] . ( 11 sec) [ -17271.2443] [ 2313] [depth= 2] . ( 12 sec) [ -17080.0727] [ 2294] [depth= 1] . ( 12 sec) [ -16803.5552] [ 2223] [depth= 1] . ( 13 sec) [ -16743.3422] [ 2217] [depth= 5] . ( 14 sec) [ -16649.5125] [ 2209] [depth= 2] . ( 15 sec) [ -16647.4427] [ 2204] [depth= 4] . ( 16 sec) [ -16637.3323] [ 2206] [depth= 2] . ( 17 sec) [ -16590.8214] [ 2195] [depth= 2] . ( 17 sec) [ -16574.8609] [ 2187] [depth= 3] . ( 18 sec) [ -16538.5877] [ 2178] [depth= 6] . ( 18 sec) [ -16529.8133] [ 2174] [depth= 1] . ( 20 sec) [ -16503.7687] [ 2167] [depth= 4] . ( 20 sec) [ -16503.4883] [ 2276] [depth= 1] . ( 21 sec) [ -16215.5559] [ 2167] [depth= 1] . ( 25 sec) [ -16115.4421] [ 2142] [depth= 3] . ( 26 sec) [ -16048.6298] [Branch lengths ] . ( 27 sec) [ -16047.3952] [Alpha ][ 0.458447] . ( 33 sec) [ -16040.7361] [ 2140] [depth= 1] . ( 34 sec) [ -16040.6813] [ 2141] [depth= 1] . ( 34 sec) [ -16039.4791] [ 2141] [depth= 2] . ( 63 sec) [ -16036.5470] [ 2142] [depth= 2] . ( 68 sec) [ -16032.4629] [ 2147] [depth= 1] . ( 70 sec) [ -16025.6501] [Branch lengths ] . ( 71 sec) [ -16025.6441] [Alpha ][ 0.461266] . ( 81 sec) [ -16022.8631] [ 2142] [depth= 1] . ( 110 sec) [ -16019.6552] [ 2144] [depth= 1] . ( 112 sec) [ -16019.0817] [ 2142] [depth= 1] . ( 122 sec) [ -16017.7882] [Branch lengths ] . ( 122 sec) [ -16017.7858] [Alpha ][ 0.463005] . ( 177 sec) [ -16017.6451] [Branch lengths ] . ( 177 sec) [ -16017.6451] [Topology ] . ( 180 sec) [ -16017.6304] [Topology ] . ( 183 sec) [ -16017.6265] [Topology ] . ( 186 sec) [ -16017.6249] [Topology ] . ( 189 sec) [ -16017.6242] [Topology ] . ( 190 sec) [ -16017.6233] [Alpha ][ 0.464073] . ( 190 sec) [ -16017.6233] [Topology ] . ( 193 sec) [ -16017.6229] [Topology ] . ( 193 sec) [ -16017.6229] [Alpha ][ 0.464073] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -16017.622867. . [Random start 5/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -19546.7562] [Alpha ][ 0.500960] . ( 1 sec) [ -19366.9912] [ 2380] [depth= 3] . ( 2 sec) [ -18292.9004] [ 2365] [depth= 5] . ( 3 sec) [ -18230.1690] [ 2361] [depth= 2] . ( 3 sec) [ -18152.8771] [ 2357] [depth= 2] . ( 4 sec) [ -17726.1765] [ 2336] [depth= 6] . ( 4 sec) [ -17712.7108] [ 2329] [depth= 1] . ( 5 sec) [ -17541.1354] [ 2316] [depth= 6] . ( 5 sec) [ -17471.1882] [ 2333] [depth= 1] . ( 6 sec) [ -17418.8140] [ 2343] [depth= 1] . ( 7 sec) [ -17409.1510] [ 2340] [depth= 3] . ( 8 sec) [ -17347.8538] [ 2334] [depth= 1] . ( 8 sec) [ -17004.1101] [ 2328] [depth= 8] . ( 9 sec) [ -16950.8900] [ 2320] [depth= 1] . ( 9 sec) [ -16802.1156] [ 2277] [depth= 5] . ( 10 sec) [ -16782.9525] [ 2276] [depth= 1] . ( 10 sec) [ -16488.1070] [ 2189] [depth= 1] . ( 11 sec) [ -16440.3741] [ 2183] [depth= 3] . ( 12 sec) [ -16310.4813] [ 2173] [depth= 2] . ( 12 sec) [ -16293.4953] [ 2172] [depth= 2] . ( 13 sec) [ -16269.9317] [ 2166] [depth= 3] . ( 13 sec) [ -16224.5955] [ 2166] [depth= 1] . ( 14 sec) [ -16196.9685] [ 2164] [depth= 3] . ( 15 sec) [ -16190.2171] [ 2158] [depth= 3] . ( 15 sec) [ -16183.8740] [ 2158] [depth= 1] . ( 16 sec) [ -16182.3545] [ 2157] [depth= 3] . ( 16 sec) [ -16173.1026] [ 2157] [depth= 1] . ( 20 sec) [ -16169.0227] [ 2158] [depth= 1] . ( 27 sec) [ -16095.1911] [ 2148] [depth= 1] . ( 28 sec) [ -16093.8954] [ 2146] [depth= 2] . ( 30 sec) [ -16074.4447] [Branch lengths ] . ( 30 sec) [ -16073.6613] [Alpha ][ 0.466675] . ( 34 sec) [ -16072.8715] [ 2151] [depth= 1] . ( 35 sec) [ -16072.7718] [ 2151] [depth= 1] . ( 39 sec) [ -16045.1724] [ 2151] [depth= 5] . ( 39 sec) [ -16041.3534] [ 2145] [depth= 3] . ( 47 sec) [ -16040.6015] [ 2138] [depth= 1] . ( 47 sec) [ -16037.1997] [ 2139] [depth= 2] . ( 49 sec) [ -16028.0638] [ 2139] [depth= 5] . ( 50 sec) [ -16024.8207] [ 2142] [depth= 1] . ( 65 sec) [ -16018.3748] [Branch lengths ] . ( 66 sec) [ -16018.3620] [Alpha ][ 0.462349] . ( 121 sec) [ -16017.6659] [Branch lengths ] . ( 121 sec) [ -16017.6659] [Topology ] . ( 124 sec) [ -16017.6359] [Topology ] . ( 127 sec) [ -16017.6294] [Topology ] . ( 130 sec) [ -16017.6270] [Topology ] . ( 133 sec) [ -16017.6259] [Topology ] . ( 136 sec) [ -16017.6255] [Topology ] . ( 136 sec) [ -16017.6231] [Alpha ][ 0.464102] . ( 136 sec) [ -16017.6231] [Topology ] . ( 139 sec) [ -16017.6228] [Topology ] . ( 140 sec) [ -16017.6228] [Alpha ][ 0.464102] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -16017.622780. . Computing pairwise distances... . Building BioNJ tree... . Maximizing likelihood (using NNI moves)... . ( 2 sec) [ -16272.8201] [Alpha ][ 0.500960] . ( 2 sec) [ -16272.8201] [Topology ] . ( 4 sec) [ -16124.4060] [Topology ] . ( 7 sec) [ -16086.2129] [Topology ] . ( 10 sec) [ -16072.3076] [Topology ] . ( 13 sec) [ -16061.1236] [Topology ] . ( 16 sec) [ -16053.0032] [Topology ] . ( 19 sec) [ -16050.9918] [Topology ] . ( 22 sec) [ -16050.3042] [Topology ] . ( 25 sec) [ -16050.2324] [Topology ] . ( 28 sec) [ -16050.2141] [Topology ] . Checking for NNIs, optimizing five branches... . ( 54 sec) [ -16050.0087] [Topology ] . ( 54 sec) [ -16049.2399] [Alpha ][ 0.467378] . ( 54 sec) [ -16049.2399] [Topology ] . ( 57 sec) [ -16049.1251] [Topology ] . ( 60 sec) [ -16049.1165] [Topology ] . ( 63 sec) [ -16049.1154] [Topology ] . ( 66 sec) [ -16049.1151] [Topology ] . Checking for NNIs, optimizing five branches... . ( 90 sec) [ -16048.4517] [Topology ] . ( 91 sec) [ -16048.4488] [Alpha ][ 0.465254] . ( 91 sec) [ -16048.4488] [Topology ] . ( 94 sec) [ -16046.0347] [Topology ] . ( 97 sec) [ -16045.7175] [Topology ] . ( 100 sec) [ -16045.6690] [Topology ] . ( 103 sec) [ -16045.6568] [Topology ] . ( 106 sec) [ -16045.6536] [Topology ] . ( 109 sec) [ -16045.6527] [Topology ] . Checking for NNIs, optimizing five branches... . ( 132 sec) [ -16045.6488] [Alpha ][ 0.467545] . ( 132 sec) [ -16045.6488] [Topology ] . ( 135 sec) [ -16045.6485] [Topology ] . Checking for NNIs, optimizing five branches... . ( 159 sec) [ -16045.6485] [Alpha ][ 0.467545] . ( 159 sec) [ -16045.6485] [Topology ] . ( 162 sec) [ -16045.6484] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 208 sec) [ -16272.8201] [Alpha ][ 0.500960] . ( 213 sec) [ -16264.1231] [ 2165] [depth= 5] . ( 213 sec) [ -16247.5499] [ 2160] [depth= 3] . ( 215 sec) [ -16206.3558] [ 2156] [depth= 2] . ( 215 sec) [ -16188.7553] [ 2153] [depth= 2] . ( 216 sec) [ -16172.6647] [ 2156] [depth= 1] . ( 217 sec) [ -16159.8939] [ 2154] [depth= 2] . ( 217 sec) [ -16152.7174] [ 2157] [depth= 1] . ( 218 sec) [ -16152.5892] [ 2152] [depth= 6] . ( 218 sec) [ -16107.1498] [ 2147] [depth= 4] . ( 220 sec) [ -16105.9109] [ 2144] [depth= 3] . ( 221 sec) [ -16089.6447] [ 2141] [depth= 1] . ( 222 sec) [ -16087.1063] [ 2134] [depth= 1] . ( 224 sec) [ -16080.6675] [ 2136] [depth= 2] . ( 225 sec) [ -16079.8218] [ 2139] [depth= 2] . ( 226 sec) [ -16076.9515] [ 2138] [depth= 1] . ( 231 sec) [ -16076.7579] [ 2136] [depth= 2] . ( 235 sec) [ -16036.3551] [Branch lengths ] . ( 235 sec) [ -16035.0901] [Alpha ][ 0.458010] . ( 253 sec) [ -16033.9401] [ 2139] [depth= 1] . ( 255 sec) [ -16033.2307] [ 2138] [depth= 1] . ( 258 sec) [ -16032.6792] [ 2134] [depth= 1] . ( 267 sec) [ -16031.4201] [ 2138] [depth= 2] . ( 268 sec) [ -16025.1544] [Branch lengths ] . ( 269 sec) [ -16025.1484] [Alpha ][ 0.460801] . ( 286 sec) [ -16025.1280] [ 2135] [depth= 1] . ( 286 sec) [ -16018.5829] [ 2131] [depth= 1] . ( 306 sec) [ -16016.7627] [Branch lengths ] . ( 307 sec) [ -16016.7591] [Alpha ][ 0.462982] . ( 345 sec) [ -16016.6622] [Branch lengths ] . ( 346 sec) [ -16016.6622] [Topology ] . ( 348 sec) [ -16016.6554] [Topology ] . ( 351 sec) [ -16016.6534] [Topology ] . ( 354 sec) [ -16016.6526] [Topology ] . ( 354 sec) [ -16016.6521] [Alpha ][ 0.463697] . ( 355 sec) [ -16016.6521] [Topology ] . ( 357 sec) [ -16016.6517] [Topology ] . ( 358 sec) [ -16016.6517] [Alpha ][ 0.463697] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -16045.648355 . Log likelihood obtained after SPR moves : -16016.651717 . Log likelihood of the current tree: -16016.651717. . Printing the most likely tree in file 'proteic_M1378_18x1561_2003.phy_phyml_tree.txt'... . Best log likelihood : -16016.651429 . Time used 0h6m24s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 1236.02user 0.00system 20:44.67elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps