.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2363_38x251_2004.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : yes . Number of random starting trees : 5 . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 244 patterns found. (out of a total of 251 sites) . 24 sites without polymorphism (9.56%). . [Random start 1/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . This analysis requires at least 23Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -18858.9613] [Alpha ][ 0.500960] . ( 2 sec) [ -18387.3173] [ 3762] [depth= 11] . ( 2 sec) [ -17893.3699] [ 3683] [depth= 10] . ( 2 sec) [ -17845.3058] [ 3664] [depth= 2] . ( 3 sec) [ -17686.2185] [ 3654] [depth= 3] . ( 3 sec) [ -17516.2319] [ 3609] [depth= 4] . ( 3 sec) [ -17304.9818] [ 3596] [depth= 7] . ( 4 sec) [ -17138.2914] [ 3505] [depth= 6] . ( 4 sec) [ -17098.4511] [ 3490] [depth= 1] . ( 4 sec) [ -17065.6985] [ 3472] [depth= 13] . ( 5 sec) [ -16849.9090] [ 3444] [depth= 7] . ( 5 sec) [ -16779.7824] [ 3441] [depth= 3] . ( 5 sec) [ -16490.3651] [ 3412] [depth= 9] . ( 6 sec) [ -16411.6737] [ 3371] [depth= 11] . ( 6 sec) [ -16399.6043] [ 3368] [depth= 1] . ( 6 sec) [ -16361.8193] [ 3326] [depth= 8] . ( 7 sec) [ -16323.6180] [ 3325] [depth= 1] . ( 7 sec) [ -16283.9949] [ 3288] [depth= 1] . ( 7 sec) [ -16101.1622] [ 3242] [depth= 10] . ( 8 sec) [ -16085.5654] [ 3241] [depth= 8] . ( 8 sec) [ -16068.7054] [ 3244] [depth= 1] . ( 8 sec) [ -16041.8889] [ 3241] [depth= 6] . ( 9 sec) [ -15961.4793] [ 3220] [depth= 7] . ( 9 sec) [ -15561.7697] [ 3212] [depth= 3] . ( 9 sec) [ -15471.8029] [ 3164] [depth= 13] . ( 10 sec) [ -15426.2423] [ 3159] [depth= 2] . ( 10 sec) [ -15143.7646] [ 3088] [depth= 14] . ( 10 sec) [ -14962.1711] [ 3087] [depth= 1] . ( 11 sec) [ -14929.3362] [ 3085] [depth= 1] . ( 11 sec) [ -14692.3274] [ 3016] [depth= 11] . ( 11 sec) [ -14647.3043] [ 3013] [depth= 1] . ( 12 sec) [ -14503.5818] [ 2986] [depth= 11] . ( 12 sec) [ -14222.4827] [ 2979] [depth= 1] . ( 13 sec) [ -14192.7334] [ 2971] [depth= 3] . ( 13 sec) [ -14096.5825] [ 2968] [depth= 1] . ( 13 sec) [ -14013.4171] [ 2964] [depth= 2] . ( 13 sec) [ -13947.8335] [ 2948] [depth= 11] . ( 14 sec) [ -13818.2791] [ 2915] [depth= 8] . ( 14 sec) [ -13744.6198] [ 2915] [depth= 1] . ( 15 sec) [ -13541.4893] [ 2908] [depth= 6] . ( 15 sec) [ -13515.4542] [ 2900] [depth= 1] . ( 15 sec) [ -13460.6290] [ 2900] [depth= 2] . ( 16 sec) [ -13358.7115] [ 2858] [depth= 9] . ( 16 sec) [ -13318.4492] [ 2848] [depth= 11] . ( 17 sec) [ -13293.1399] [ 2838] [depth= 14] . ( 17 sec) [ -13234.0367] [ 2833] [depth= 1] . ( 17 sec) [ -13145.1487] [ 2832] [depth= 4] . ( 18 sec) [ -12985.7781] [ 2811] [depth= 11] . ( 18 sec) [ -12955.9156] [ 2812] [depth= 9] . ( 18 sec) [ -12864.6100] [ 2812] [depth= 1] . ( 19 sec) [ -12833.7295] [ 2776] [depth= 10] . ( 19 sec) [ -12823.5501] [ 2774] [depth= 1] . ( 20 sec) [ -12789.8802] [ 2774] [depth= 2] . ( 20 sec) [ -12787.3894] [ 2777] [depth= 2] . ( 20 sec) [ -12784.0270] [ 2775] [depth= 3] . ( 21 sec) [ -12779.6582] [ 2771] [depth= 3] . ( 21 sec) [ -12779.5507] [ 2775] [depth= 1] . ( 22 sec) [ -12758.7835] [ 2770] [depth= 4] . ( 22 sec) [ -12696.9431] [ 2765] [depth= 3] . ( 22 sec) [ -12681.5424] [ 2761] [depth= 2] . ( 23 sec) [ -12669.8293] [ 2739] [depth= 5] . ( 23 sec) [ -12668.0623] [ 2742] [depth= 1] . ( 24 sec) [ -12599.5929] [ 2739] [depth= 1] . ( 24 sec) [ -12481.5478] [ 2737] [depth= 1] . ( 25 sec) [ -12476.8338] [ 2734] [depth= 1] . ( 25 sec) [ -12473.1167] [ 2735] [depth= 1] . ( 25 sec) [ -12454.8351] [ 2730] [depth= 1] . ( 26 sec) [ -12424.0440] [ 2730] [depth= 2] . ( 26 sec) [ -12417.4254] [ 2729] [depth= 1] . ( 26 sec) [ -12414.7772] [ 2727] [depth= 1] . ( 27 sec) [ -12414.3211] [ 2729] [depth= 1] . ( 27 sec) [ -12386.0901] [ 2732] [depth= 2] . ( 28 sec) [ -12380.1521] [ 2723] [depth= 1] . ( 28 sec) [ -12370.5589] [ 2715] [depth= 2] . ( 31 sec) [ -12324.2071] [ 2708] [depth= 3] . ( 31 sec) [ -12324.0923] [ 2708] [depth= 1] . ( 32 sec) [ -11997.7893] [Branch lengths ] . ( 33 sec) [ -11931.3329] [Alpha ][ 1.000401] . ( 35 sec) [ -11922.1867] [ 2705] [depth= 1] . ( 36 sec) [ -11919.7147] [ 2704] [depth= 2] . ( 36 sec) [ -11910.3427] [ 2697] [depth= 2] . ( 37 sec) [ -11902.9664] [ 2698] [depth= 1] . ( 38 sec) [ -11900.0130] [ 2696] [depth= 1] . ( 38 sec) [ -11893.2842] [ 2676] [depth= 7] . ( 39 sec) [ -11892.5796] [ 2676] [depth= 1] . ( 40 sec) [ -11892.5548] [ 2675] [depth= 2] . ( 41 sec) [ -11890.7216] [ 2678] [depth= 1] . ( 41 sec) [ -11888.0458] [ 2679] [depth= 1] . ( 41 sec) [ -11886.4911] [ 2683] [depth= 2] . ( 42 sec) [ -11885.1890] [ 2684] [depth= 1] . ( 42 sec) [ -11882.8085] [ 2684] [depth= 1] . ( 42 sec) [ -11878.9391] [ 2682] [depth= 2] . ( 45 sec) [ -11877.9356] [ 2687] [depth= 1] . ( 46 sec) [ -11874.5004] [ 2690] [depth= 2] . ( 47 sec) [ -11872.4882] [ 2688] [depth= 1] . ( 49 sec) [ -11871.2421] [ 2687] [depth= 2] . ( 49 sec) [ -11866.5901] [ 2685] [depth= 2] . ( 50 sec) [ -11865.1018] [ 2686] [depth= 1] . ( 50 sec) [ -11863.7161] [ 2691] [depth= 2] . ( 51 sec) [ -11861.9553] [ 2690] [depth= 1] . ( 52 sec) [ -11860.6233] [ 2686] [depth= 2] . ( 53 sec) [ -11853.2505] [ 2679] [depth= 6] . ( 53 sec) [ -11850.2387] [ 2684] [depth= 5] . ( 54 sec) [ -11850.0764] [ 2685] [depth= 3] . ( 54 sec) [ -11848.2685] [ 2690] [depth= 2] . ( 55 sec) [ -11848.2428] [ 2686] [depth= 1] . ( 56 sec) [ -11843.4714] [ 2676] [depth= 4] . ( 60 sec) [ -11842.2547] [ 2677] [depth= 1] . ( 60 sec) [ -11842.2013] [ 2681] [depth= 2] . ( 61 sec) [ -11838.2780] [ 2676] [depth= 4] . ( 62 sec) [ -11837.6190] [ 2677] [depth= 1] . ( 63 sec) [ -11836.6353] [ 2671] [depth= 2] . ( 65 sec) [ -11836.1422] [ 2672] [depth= 1] . ( 67 sec) [ -11806.3759] [Branch lengths ] . ( 68 sec) [ -11767.1408] [Alpha ][ 1.997772] . ( 68 sec) [ -11766.8564] [ 2672] [depth= 1] . ( 69 sec) [ -11765.9912] [ 2672] [depth= 2] . ( 72 sec) [ -11765.9306] [ 2675] [depth= 3] . ( 76 sec) [ -11761.9355] [ 2675] [depth= 1] . ( 78 sec) [ -11761.5975] [ 2673] [depth= 1] . ( 79 sec) [ -11760.1372] [ 2674] [depth= 1] . ( 91 sec) [ -11759.5636] [ 2675] [depth= 2] . ( 92 sec) [ -11757.7065] [ 2678] [depth= 2] . ( 92 sec) [ -11757.4850] [ 2666] [depth= 4] . ( 94 sec) [ -11757.4245] [ 2666] [depth= 1] . ( 95 sec) [ -11757.3905] [ 2671] [depth= 1] . ( 97 sec) [ -11757.3634] [ 2673] [depth= 2] . ( 101 sec) [ -11757.0886] [ 2675] [depth= 1] . ( 107 sec) [ -11756.9111] [ 2675] [depth= 1] . ( 111 sec) [ -11746.9890] [Branch lengths ] . ( 112 sec) [ -11734.2251] [Alpha ][ 3.752012] . ( 116 sec) [ -11733.9219] [ 2673] [depth= 1] . ( 118 sec) [ -11733.4507] [ 2673] [depth= 2] . ( 118 sec) [ -11733.0657] [ 2669] [depth= 1] . ( 119 sec) [ -11732.3776] [ 2665] [depth= 1] . ( 123 sec) [ -11732.2061] [ 2669] [depth= 1] . ( 130 sec) [ -11731.9619] [ 2670] [depth= 1] . ( 135 sec) [ -11731.8903] [ 2668] [depth= 1] . ( 135 sec) [ -11731.7971] [ 2669] [depth= 1] . ( 136 sec) [ -11731.6709] [ 2664] [depth= 2] . ( 141 sec) [ -11731.2629] [ 2665] [depth= 1] . ( 144 sec) [ -11731.1045] [ 2668] [depth= 1] . ( 148 sec) [ -11730.2898] [ 2665] [depth= 2] . ( 153 sec) [ -11721.4507] [Branch lengths ] . ( 153 sec) [ -11719.5893] [Alpha ][ 4.964421] . ( 169 sec) [ -11719.5074] [ 2664] [depth= 3] . ( 174 sec) [ -11719.3903] [ 2669] [depth= 1] . ( 179 sec) [ -11719.2530] [ 2669] [depth= 1] . ( 197 sec) [ -11713.7911] [Branch lengths ] . ( 198 sec) [ -11713.3148] [Alpha ][ 5.806773] . ( 250 sec) [ -11711.6906] [Branch lengths ] . ( 250 sec) [ -11711.6906] [Topology ] . ( 253 sec) [ -11711.4375] [Topology ] . ( 255 sec) [ -11711.3112] [Topology ] . ( 257 sec) [ -11711.2412] [Topology ] . ( 260 sec) [ -11711.1935] [Topology ] . ( 262 sec) [ -11711.1587] [Topology ] . ( 264 sec) [ -11711.1312] [Topology ] . ( 265 sec) [ -11711.0172] [Alpha ][ 6.299027] . ( 265 sec) [ -11711.0172] [Topology ] . ( 267 sec) [ -11710.9756] [Topology ] . ( 270 sec) [ -11710.9526] [Topology ] . ( 272 sec) [ -11710.9360] [Topology ] . ( 274 sec) [ -11710.9231] [Topology ] . ( 277 sec) [ -11710.9127] [Topology ] . ( 279 sec) [ -11710.9041] [Topology ] . ( 280 sec) [ -11710.8977] [Alpha ][ 6.422917] . ( 280 sec) [ -11710.8977] [Topology ] . ( 282 sec) [ -11710.8891] [Topology ] . ( 284 sec) [ -11710.8825] [Topology ] . ( 287 sec) [ -11710.8772] [Topology ] . ( 289 sec) [ -11710.8727] [Topology ] . ( 291 sec) [ -11710.8690] [Topology ] . ( 294 sec) [ -11710.8658] [Topology ] . ( 294 sec) [ -11710.8652] [Alpha ][ 6.462961] . ( 294 sec) [ -11710.8652] [Topology ] . ( 297 sec) [ -11710.8633] [Topology ] . ( 299 sec) [ -11710.8627] [Topology ] . ( 299 sec) [ -11710.8626] [Alpha ][ 6.470706] . ( 300 sec) [ -11710.8626] [Topology ] . ( 302 sec) [ -11710.8624] [Topology ] . ( 302 sec) [ -11710.8623] [Alpha ][ 6.481858] . Checking for NNIs, optimizing five branches... . ( 330 sec) [ -11710.8320] [Topology ] . Checking for NNIs, optimizing five branches... . ( 357 sec) [ -11710.8062] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -11710.806186. . [Random start 2/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -17675.2059] [Alpha ][ 0.500960] . ( 1 sec) [ -17327.9357] [ 3542] [depth= 7] . ( 1 sec) [ -16850.8096] [ 3464] [depth= 13] . ( 2 sec) [ -16787.8951] [ 3444] [depth= 5] . ( 2 sec) [ -16638.2835] [ 3402] [depth= 1] . ( 2 sec) [ -16282.9376] [ 3365] [depth= 6] . ( 2 sec) [ -16177.1658] [ 3347] [depth= 4] . ( 3 sec) [ -16151.9058] [ 3310] [depth= 4] . ( 3 sec) [ -15920.4053] [ 3272] [depth= 3] . ( 3 sec) [ -15868.1269] [ 3247] [depth= 5] . ( 4 sec) [ -15832.1984] [ 3210] [depth= 4] . ( 4 sec) [ -15678.7255] [ 3196] [depth= 3] . ( 5 sec) [ -15567.5161] [ 3160] [depth= 4] . ( 5 sec) [ -15476.1945] [ 3184] [depth= 12] . ( 5 sec) [ -15426.5972] [ 3163] [depth= 1] . ( 6 sec) [ -15414.7467] [ 3163] [depth= 2] . ( 6 sec) [ -15315.0385] [ 3115] [depth= 10] . ( 6 sec) [ -15298.4169] [ 3120] [depth= 1] . ( 6 sec) [ -15196.8843] [ 3114] [depth= 5] . ( 7 sec) [ -15147.9936] [ 3105] [depth= 3] . ( 7 sec) [ -15130.6726] [ 3105] [depth= 1] . ( 8 sec) [ -15106.6406] [ 3105] [depth= 1] . ( 8 sec) [ -15061.0122] [ 3095] [depth= 3] . ( 8 sec) [ -14699.6371] [ 3047] [depth= 2] . ( 9 sec) [ -14225.7920] [ 3042] [depth= 1] . ( 9 sec) [ -14218.1838] [ 3042] [depth= 2] . ( 10 sec) [ -14209.7417] [ 3027] [depth= 4] . ( 10 sec) [ -14122.0045] [ 2982] [depth= 13] . ( 10 sec) [ -14020.3387] [ 2984] [depth= 1] . ( 11 sec) [ -13791.5792] [ 2972] [depth= 1] . ( 11 sec) [ -13782.2072] [ 2967] [depth= 3] . ( 12 sec) [ -13742.4090] [ 2954] [depth= 7] . ( 12 sec) [ -13674.8512] [ 2915] [depth= 11] . ( 12 sec) [ -13553.3932] [ 2909] [depth= 1] . ( 12 sec) [ -13527.6810] [ 2914] [depth= 1] . ( 13 sec) [ -13379.4153] [ 2895] [depth= 14] . ( 13 sec) [ -13350.9169] [ 2889] [depth= 1] . ( 14 sec) [ -13345.5670] [ 2875] [depth= 2] . ( 14 sec) [ -13270.1144] [ 2852] [depth= 6] . ( 15 sec) [ -13242.3782] [ 2846] [depth= 5] . ( 15 sec) [ -13196.5905] [ 2839] [depth= 2] . ( 15 sec) [ -13189.9112] [ 2825] [depth= 1] . ( 16 sec) [ -13164.2239] [ 2815] [depth= 1] . ( 16 sec) [ -13145.6344] [ 2811] [depth= 1] . ( 16 sec) [ -13113.2307] [ 2800] [depth= 4] . ( 17 sec) [ -13101.8631] [ 2799] [depth= 1] . ( 17 sec) [ -13077.3462] [ 2797] [depth= 6] . ( 17 sec) [ -12938.3704] [ 2785] [depth= 1] . ( 18 sec) [ -12922.1480] [ 2787] [depth= 1] . ( 18 sec) [ -12892.0367] [ 2785] [depth= 1] . ( 18 sec) [ -12799.8634] [ 2786] [depth= 1] . ( 19 sec) [ -12772.9336] [ 2787] [depth= 5] . ( 19 sec) [ -12757.6495] [ 2766] [depth= 4] . ( 20 sec) [ -12734.3693] [ 2769] [depth= 1] . ( 20 sec) [ -12713.7011] [ 2767] [depth= 1] . ( 20 sec) [ -12660.5842] [ 2764] [depth= 1] . ( 21 sec) [ -12659.3951] [ 2764] [depth= 1] . ( 21 sec) [ -12517.7025] [ 2746] [depth= 1] . ( 22 sec) [ -12512.2184] [ 2745] [depth= 1] . ( 22 sec) [ -12509.8326] [ 2746] [depth= 1] . ( 23 sec) [ -12500.4613] [ 2746] [depth= 1] . ( 23 sec) [ -12444.5846] [ 2737] [depth= 4] . ( 24 sec) [ -12443.9921] [ 2739] [depth= 1] . ( 24 sec) [ -12440.0090] [ 2739] [depth= 1] . ( 25 sec) [ -12407.1471] [ 2731] [depth= 2] . ( 25 sec) [ -12354.0495] [ 2709] [depth= 6] . ( 25 sec) [ -12322.1993] [ 2709] [depth= 1] . ( 26 sec) [ -12305.8898] [ 2708] [depth= 1] . ( 26 sec) [ -12302.1511] [ 2696] [depth= 1] . ( 26 sec) [ -12274.8947] [ 2690] [depth= 3] . ( 27 sec) [ -12266.5791] [ 2688] [depth= 1] . ( 27 sec) [ -12247.6986] [ 2688] [depth= 1] . ( 28 sec) [ -12203.7664] [ 2680] [depth= 5] . ( 29 sec) [ -12187.6576] [ 2680] [depth= 2] . ( 29 sec) [ -12182.7870] [ 2679] [depth= 1] . ( 29 sec) [ -12172.2865] [ 2679] [depth= 1] . ( 29 sec) [ -12166.2736] [ 2678] [depth= 1] . ( 30 sec) [ -12166.0276] [ 2678] [depth= 1] . ( 30 sec) [ -12157.1365] [ 2676] [depth= 1] . ( 33 sec) [ -11937.8518] [Branch lengths ] . ( 34 sec) [ -11869.6393] [Alpha ][ 1.000428] . ( 34 sec) [ -11869.6021] [ 2678] [depth= 1] . ( 35 sec) [ -11866.1658] [ 2676] [depth= 2] . ( 36 sec) [ -11861.1419] [ 2680] [depth= 1] . ( 37 sec) [ -11859.7502] [ 2679] [depth= 1] . ( 37 sec) [ -11855.5317] [ 2670] [depth= 3] . ( 38 sec) [ -11855.4644] [ 2674] [depth= 1] . ( 38 sec) [ -11851.8900] [ 2673] [depth= 1] . ( 39 sec) [ -11851.5129] [ 2677] [depth= 2] . ( 39 sec) [ -11848.0767] [ 2677] [depth= 1] . ( 42 sec) [ -11838.2653] [ 2680] [depth= 2] . ( 44 sec) [ -11837.9835] [ 2682] [depth= 1] . ( 46 sec) [ -11836.7971] [ 2682] [depth= 1] . ( 46 sec) [ -11836.3919] [ 2681] [depth= 2] . ( 48 sec) [ -11836.0658] [ 2681] [depth= 2] . ( 48 sec) [ -11834.0829] [ 2678] [depth= 3] . ( 49 sec) [ -11832.4700] [ 2678] [depth= 2] . ( 49 sec) [ -11832.3470] [ 2677] [depth= 1] . ( 49 sec) [ -11831.8216] [ 2677] [depth= 1] . ( 50 sec) [ -11827.6613] [ 2674] [depth= 2] . ( 51 sec) [ -11827.0721] [ 2679] [depth= 1] . ( 51 sec) [ -11826.3818] [ 2681] [depth= 1] . ( 52 sec) [ -11823.2490] [ 2677] [depth= 5] . ( 52 sec) [ -11819.0154] [ 2677] [depth= 2] . ( 53 sec) [ -11818.3310] [ 2678] [depth= 1] . ( 55 sec) [ -11817.9985] [ 2678] [depth= 1] . ( 55 sec) [ -11817.8516] [ 2681] [depth= 1] . ( 56 sec) [ -11817.7689] [ 2669] [depth= 2] . ( 57 sec) [ -11816.8878] [ 2670] [depth= 2] . ( 57 sec) [ -11816.3818] [ 2671] [depth= 1] . ( 62 sec) [ -11816.0894] [ 2667] [depth= 1] . ( 63 sec) [ -11815.8979] [ 2668] [depth= 1] . ( 66 sec) [ -11811.8903] [ 2673] [depth= 1] . ( 67 sec) [ -11811.3312] [ 2674] [depth= 1] . ( 69 sec) [ -11792.5217] [Branch lengths ] . ( 70 sec) [ -11755.1061] [Alpha ][ 1.996926] . ( 71 sec) [ -11755.0429] [ 2677] [depth= 1] . ( 71 sec) [ -11755.0224] [ 2674] [depth= 2] . ( 77 sec) [ -11754.9609] [ 2678] [depth= 1] . ( 81 sec) [ -11754.7486] [ 2678] [depth= 1] . ( 82 sec) [ -11754.2188] [ 2674] [depth= 1] . ( 86 sec) [ -11754.0257] [ 2674] [depth= 1] . ( 87 sec) [ -11753.9580] [ 2668] [depth= 5] . ( 90 sec) [ -11751.4534] [ 2663] [depth= 2] . ( 90 sec) [ -11750.9712] [ 2665] [depth= 2] . ( 97 sec) [ -11750.9465] [ 2665] [depth= 1] . ( 97 sec) [ -11744.9565] [ 2664] [depth= 2] . ( 101 sec) [ -11744.7125] [ 2665] [depth= 1] . ( 102 sec) [ -11744.5977] [ 2667] [depth= 1] . ( 104 sec) [ -11744.4252] [ 2668] [depth= 2] . ( 106 sec) [ -11736.9399] [Branch lengths ] . ( 107 sec) [ -11725.1198] [Alpha ][ 3.791123] . ( 112 sec) [ -11724.8429] [ 2673] [depth= 1] . ( 120 sec) [ -11724.8104] [ 2667] [depth= 1] . ( 124 sec) [ -11724.3911] [ 2667] [depth= 1] . ( 124 sec) [ -11724.1978] [ 2665] [depth= 1] . ( 137 sec) [ -11723.4356] [ 2670] [depth= 1] . ( 142 sec) [ -11718.1577] [Branch lengths ] . ( 143 sec) [ -11716.8707] [Alpha ][ 4.822708] . ( 156 sec) [ -11716.7361] [ 2672] [depth= 3] . ( 159 sec) [ -11716.7220] [ 2673] [depth= 1] . ( 159 sec) [ -11716.4180] [ 2664] [depth= 1] . ( 183 sec) [ -11713.4793] [Branch lengths ] . ( 184 sec) [ -11713.0391] [Alpha ][ 5.628580] . ( 228 sec) [ -11712.2980] [Branch lengths ] . ( 228 sec) [ -11712.2980] [Topology ] . ( 231 sec) [ -11711.1542] [Topology ] . ( 233 sec) [ -11710.3676] [Topology ] . ( 235 sec) [ -11710.0136] [Topology ] . ( 238 sec) [ -11709.7923] [Topology ] . ( 240 sec) [ -11709.6599] [Topology ] . ( 242 sec) [ -11709.5747] [Topology ] . ( 245 sec) [ -11709.5199] [Topology ] . ( 245 sec) [ -11709.4153] [Alpha ][ 6.093077] . ( 245 sec) [ -11709.4153] [Topology ] . ( 248 sec) [ -11709.3640] [Topology ] . ( 250 sec) [ -11709.3358] [Topology ] . ( 253 sec) [ -11709.3176] [Topology ] . ( 255 sec) [ -11709.3050] [Topology ] . ( 257 sec) [ -11709.2961] [Topology ] . ( 260 sec) [ -11709.2895] [Topology ] . ( 260 sec) [ -11709.2856] [Alpha ][ 6.191598] . ( 260 sec) [ -11709.2856] [Topology ] . ( 262 sec) [ -11709.2799] [Topology ] . ( 265 sec) [ -11709.2760] [Topology ] . ( 267 sec) [ -11709.2730] [Topology ] . ( 269 sec) [ -11709.2706] [Topology ] . ( 272 sec) [ -11709.2690] [Topology ] . ( 274 sec) [ -11709.2679] [Topology ] . ( 275 sec) [ -11709.2678] [Alpha ][ 6.208938] . ( 275 sec) [ -11709.2678] [Topology ] . ( 277 sec) [ -11709.2669] [Topology ] . ( 278 sec) [ -11709.2669] [Alpha ][ 6.215147] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -11709.266937. . [Random start 3/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -20140.4467] [Alpha ][ 0.500960] . ( 1 sec) [ -19752.1039] [ 3516] [depth= 8] . ( 2 sec) [ -19255.2318] [ 3480] [depth= 3] . ( 2 sec) [ -19086.3372] [ 3464] [depth= 1] . ( 2 sec) [ -19060.8090] [ 3463] [depth= 8] . ( 3 sec) [ -17061.0625] [ 3457] [depth= 8] . ( 3 sec) [ -16764.6028] [ 3451] [depth= 2] . ( 3 sec) [ -16682.9529] [ 3445] [depth= 1] . ( 4 sec) [ -16577.2771] [ 3386] [depth= 8] . ( 4 sec) [ -16429.5941] [ 3378] [depth= 4] . ( 4 sec) [ -16296.0940] [ 3351] [depth= 11] . ( 5 sec) [ -16197.3910] [ 3350] [depth= 1] . ( 5 sec) [ -16103.9753] [ 3296] [depth= 8] . ( 5 sec) [ -15799.2012] [ 3272] [depth= 8] . ( 6 sec) [ -15793.8272] [ 3276] [depth= 2] . ( 6 sec) [ -15732.9337] [ 3276] [depth= 2] . ( 7 sec) [ -15534.3461] [ 3269] [depth= 4] . ( 7 sec) [ -15509.1841] [ 3262] [depth= 2] . ( 7 sec) [ -15463.2371] [ 3237] [depth= 8] . ( 8 sec) [ -15341.6844] [ 3206] [depth= 4] . ( 8 sec) [ -15324.5747] [ 3206] [depth= 2] . ( 8 sec) [ -15243.7139] [ 3177] [depth= 12] . ( 9 sec) [ -15242.8282] [ 3177] [depth= 1] . ( 9 sec) [ -15174.4739] [ 3177] [depth= 6] . ( 9 sec) [ -14822.0077] [ 3110] [depth= 5] . ( 10 sec) [ -14796.7463] [ 3100] [depth= 5] . ( 10 sec) [ -14714.9213] [ 3093] [depth= 1] . ( 10 sec) [ -14682.2206] [ 3091] [depth= 1] . ( 11 sec) [ -14603.6945] [ 3070] [depth= 8] . ( 11 sec) [ -14598.2700] [ 3068] [depth= 5] . ( 11 sec) [ -14595.1816] [ 3066] [depth= 5] . ( 12 sec) [ -14266.5429] [ 3013] [depth= 5] . ( 12 sec) [ -14244.2521] [ 3009] [depth= 1] . ( 12 sec) [ -13909.8688] [ 2937] [depth= 8] . ( 13 sec) [ -13864.9471] [ 2924] [depth= 3] . ( 13 sec) [ -13762.4453] [ 2918] [depth= 1] . ( 13 sec) [ -13712.9386] [ 2904] [depth= 1] . ( 14 sec) [ -13576.3282] [ 2884] [depth= 4] . ( 14 sec) [ -13490.2441] [ 2861] [depth= 1] . ( 14 sec) [ -13410.1221] [ 2828] [depth= 1] . ( 15 sec) [ -13391.8223] [ 2824] [depth= 4] . ( 15 sec) [ -13391.4831] [ 2827] [depth= 1] . ( 16 sec) [ -13368.1145] [ 2831] [depth= 7] . ( 17 sec) [ -13364.8107] [ 2829] [depth= 2] . ( 17 sec) [ -13302.7000] [ 2823] [depth= 2] . ( 17 sec) [ -13290.1843] [ 2810] [depth= 7] . ( 18 sec) [ -13261.6990] [ 2802] [depth= 5] . ( 18 sec) [ -13254.9711] [ 2802] [depth= 1] . ( 19 sec) [ -13179.6148] [ 2785] [depth= 7] . ( 19 sec) [ -13168.6965] [ 2783] [depth= 3] . ( 20 sec) [ -13148.8031] [ 2788] [depth= 1] . ( 20 sec) [ -13143.8791] [ 2790] [depth= 1] . ( 21 sec) [ -13111.7149] [ 2788] [depth= 2] . ( 21 sec) [ -13019.4878] [ 2765] [depth= 2] . ( 21 sec) [ -12940.3939] [ 2750] [depth= 1] . ( 21 sec) [ -12898.2272] [ 2749] [depth= 3] . ( 22 sec) [ -12855.7387] [ 2727] [depth= 6] . ( 22 sec) [ -12839.7769] [ 2716] [depth= 5] . ( 22 sec) [ -12810.5640] [ 2717] [depth= 2] . ( 23 sec) [ -12808.0339] [ 2716] [depth= 1] . ( 23 sec) [ -12796.1036] [ 2720] [depth= 1] . ( 24 sec) [ -12794.5112] [ 2719] [depth= 2] . ( 24 sec) [ -12794.2938] [ 2719] [depth= 1] . ( 25 sec) [ -12583.3019] [ 2701] [depth= 1] . ( 25 sec) [ -12542.6863] [ 2691] [depth= 8] . ( 25 sec) [ -12530.3998] [ 2690] [depth= 2] . ( 26 sec) [ -12455.8372] [ 2691] [depth= 1] . ( 27 sec) [ -12453.9638] [ 2686] [depth= 2] . ( 27 sec) [ -12392.4783] [ 2688] [depth= 1] . ( 27 sec) [ -12311.0716] [ 2683] [depth= 2] . ( 28 sec) [ -12306.0085] [ 2677] [depth= 1] . ( 28 sec) [ -12303.7310] [ 2676] [depth= 1] . ( 28 sec) [ -12301.4155] [ 2672] [depth= 1] . ( 29 sec) [ -12268.8564] [ 2703] [depth= 1] . ( 30 sec) [ -12111.5636] [ 2672] [depth= 1] . ( 31 sec) [ -11961.2879] [Branch lengths ] . ( 32 sec) [ -11900.9646] [Alpha ][ 1.000401] . ( 33 sec) [ -11900.9328] [ 2673] [depth= 1] . ( 33 sec) [ -11897.8609] [ 2676] [depth= 1] . ( 34 sec) [ -11895.5386] [ 2672] [depth= 2] . ( 36 sec) [ -11895.3328] [ 2675] [depth= 1] . ( 38 sec) [ -11895.3086] [ 2674] [depth= 1] . ( 41 sec) [ -11895.1583] [ 2672] [depth= 4] . ( 42 sec) [ -11894.9682] [ 2669] [depth= 1] . ( 43 sec) [ -11892.5784] [ 2671] [depth= 5] . ( 44 sec) [ -11891.5669] [ 2667] [depth= 1] . ( 46 sec) [ -11890.0164] [ 2671] [depth= 2] . ( 47 sec) [ -11888.3700] [ 2667] [depth= 2] . ( 53 sec) [ -11887.7583] [ 2667] [depth= 1] . ( 53 sec) [ -11887.2808] [ 2671] [depth= 1] . ( 54 sec) [ -11886.8268] [ 2667] [depth= 1] . ( 54 sec) [ -11885.2908] [ 2667] [depth= 1] . ( 55 sec) [ -11885.2060] [ 2667] [depth= 1] . ( 58 sec) [ -11881.8377] [ 2671] [depth= 1] . ( 59 sec) [ -11881.6146] [ 2673] [depth= 1] . ( 60 sec) [ -11880.0398] [ 2671] [depth= 1] . ( 62 sec) [ -11879.3308] [ 2673] [depth= 1] . ( 63 sec) [ -11863.1799] [ 2674] [depth= 2] . ( 68 sec) [ -11861.4320] [ 2674] [depth= 2] . ( 71 sec) [ -11861.2215] [ 2675] [depth= 1] . ( 74 sec) [ -11860.9897] [ 2674] [depth= 1] . ( 79 sec) [ -11821.6943] [Branch lengths ] . ( 79 sec) [ -11783.4402] [Alpha ][ 1.997772] . ( 81 sec) [ -11782.9886] [ 2674] [depth= 1] . ( 82 sec) [ -11782.5832] [ 2675] [depth= 1] . ( 85 sec) [ -11782.4470] [ 2675] [depth= 2] . ( 86 sec) [ -11782.2838] [ 2671] [depth= 2] . ( 91 sec) [ -11781.5325] [ 2667] [depth= 1] . ( 92 sec) [ -11779.2605] [ 2667] [depth= 1] . ( 98 sec) [ -11779.1987] [ 2669] [depth= 1] . ( 98 sec) [ -11777.7681] [ 2664] [depth= 1] . ( 104 sec) [ -11777.5004] [ 2665] [depth= 1] . ( 108 sec) [ -11776.2491] [ 2666] [depth= 2] . ( 109 sec) [ -11776.1542] [ 2671] [depth= 1] . ( 122 sec) [ -11756.5897] [Branch lengths ] . ( 122 sec) [ -11736.9685] [Alpha ][ 3.988347] . ( 123 sec) [ -11736.9414] [ 2674] [depth= 1] . ( 132 sec) [ -11736.8455] [ 2671] [depth= 2] . ( 133 sec) [ -11736.7185] [ 2673] [depth= 1] . ( 143 sec) [ -11736.6957] [ 2671] [depth= 1] . ( 153 sec) [ -11735.9762] [ 2666] [depth= 1] . ( 163 sec) [ -11730.8826] [Branch lengths ] . ( 164 sec) [ -11728.7123] [Alpha ][ 5.629429] . ( 170 sec) [ -11728.6928] [ 2668] [depth= 1] . ( 171 sec) [ -11728.5193] [ 2666] [depth= 2] . ( 183 sec) [ -11728.3709] [ 2664] [depth= 1] . ( 206 sec) [ -11726.7289] [Branch lengths ] . ( 206 sec) [ -11726.6936] [Alpha ][ 5.894884] . ( 210 sec) [ -11724.8439] [ 2668] [depth= 3] . ( 219 sec) [ -11724.5232] [ 2671] [depth= 1] . ( 223 sec) [ -11723.2661] [ 2671] [depth= 1] . ( 233 sec) [ -11719.6673] [ 2669] [depth= 1] . ( 250 sec) [ -11717.3103] [Branch lengths ] . ( 251 sec) [ -11717.3101] [Alpha ][ 5.874045] . ( 254 sec) [ -11714.3180] [ 2667] [depth= 1] . ( 263 sec) [ -11714.0167] [ 2663] [depth= 1] . ( 293 sec) [ -11713.2024] [Branch lengths ] . ( 294 sec) [ -11713.1994] [Alpha ][ 5.955359] . ( 297 sec) [ -11712.5258] [ 2664] [depth= 1] . ( 338 sec) [ -11712.1455] [Branch lengths ] . ( 338 sec) [ -11712.1411] [Alpha ][ 6.057594] . ( 383 sec) [ -11712.0317] [Branch lengths ] . ( 383 sec) [ -11712.0317] [Topology ] . ( 385 sec) [ -11710.9515] [Topology ] . ( 388 sec) [ -11710.1914] [Topology ] . ( 390 sec) [ -11709.8498] [Topology ] . ( 393 sec) [ -11709.6357] [Topology ] . ( 395 sec) [ -11709.5101] [Topology ] . ( 397 sec) [ -11709.4302] [Topology ] . ( 400 sec) [ -11709.3797] [Topology ] . ( 400 sec) [ -11709.3734] [Alpha ][ 6.176046] . ( 400 sec) [ -11709.3734] [Topology ] . ( 403 sec) [ -11709.3393] [Topology ] . ( 405 sec) [ -11709.3172] [Topology ] . ( 407 sec) [ -11709.3021] [Topology ] . ( 410 sec) [ -11709.2917] [Topology ] . ( 412 sec) [ -11709.2843] [Topology ] . ( 414 sec) [ -11709.2790] [Topology ] . ( 415 sec) [ -11709.2787] [Alpha ][ 6.202519] . ( 415 sec) [ -11709.2787] [Topology ] . ( 417 sec) [ -11709.2747] [Topology ] . ( 420 sec) [ -11709.2717] [Topology ] . ( 422 sec) [ -11709.2694] [Topology ] . ( 424 sec) [ -11709.2676] [Topology ] . ( 427 sec) [ -11709.2662] [Topology ] . ( 429 sec) [ -11709.2653] [Topology ] . ( 429 sec) [ -11709.2653] [Alpha ][ 6.208722] . ( 429 sec) [ -11709.2653] [Topology ] . ( 432 sec) [ -11709.2648] [Topology ] . ( 432 sec) [ -11709.2648] [Alpha ][ 6.214930] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -11709.264791. . [Random start 4/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -17715.8087] [Alpha ][ 0.500960] . ( 2 sec) [ -17227.2856] [ 3639] [depth= 7] . ( 2 sec) [ -16899.7198] [ 3564] [depth= 9] . ( 2 sec) [ -16899.3542] [ 3566] [depth= 1] . ( 3 sec) [ -16804.8396] [ 3554] [depth= 3] . ( 3 sec) [ -16795.2209] [ 3543] [depth= 2] . ( 3 sec) [ -16760.3517] [ 3505] [depth= 8] . ( 3 sec) [ -16687.6225] [ 3505] [depth= 1] . ( 4 sec) [ -16461.6379] [ 3475] [depth= 5] . ( 4 sec) [ -16380.3818] [ 3441] [depth= 4] . ( 4 sec) [ -16081.7241] [ 3426] [depth= 2] . ( 5 sec) [ -15899.9626] [ 3409] [depth= 3] . ( 5 sec) [ -15782.4238] [ 3378] [depth= 2] . ( 5 sec) [ -15749.2032] [ 3332] [depth= 3] . ( 6 sec) [ -15520.5895] [ 3311] [depth= 2] . ( 6 sec) [ -15337.3463] [ 3251] [depth= 7] . ( 6 sec) [ -15329.9826] [ 3252] [depth= 1] . ( 7 sec) [ -15319.9387] [ 3249] [depth= 1] . ( 7 sec) [ -15228.5686] [ 3236] [depth= 10] . ( 7 sec) [ -15041.1839] [ 3223] [depth= 3] . ( 8 sec) [ -15034.3643] [ 3219] [depth= 1] . ( 8 sec) [ -15031.3407] [ 3210] [depth= 14] . ( 8 sec) [ -14966.6946] [ 3210] [depth= 1] . ( 9 sec) [ -14898.0539] [ 3209] [depth= 4] . ( 9 sec) [ -14882.9001] [ 3206] [depth= 1] . ( 9 sec) [ -14861.1498] [ 3183] [depth= 11] . ( 10 sec) [ -14829.5460] [ 3173] [depth= 4] . ( 10 sec) [ -14769.5194] [ 3161] [depth= 1] . ( 10 sec) [ -14634.0318] [ 3142] [depth= 4] . ( 11 sec) [ -14622.2051] [ 3132] [depth= 1] . ( 11 sec) [ -14616.9369] [ 3127] [depth= 1] . ( 11 sec) [ -14533.3803] [ 3121] [depth= 10] . ( 12 sec) [ -14497.3914] [ 3122] [depth= 4] . ( 12 sec) [ -14468.8122] [ 3126] [depth= 1] . ( 13 sec) [ -14253.4558] [ 3080] [depth= 4] . ( 13 sec) [ -14134.6578] [ 3055] [depth= 1] . ( 14 sec) [ -14108.4654] [ 3042] [depth= 9] . ( 14 sec) [ -14103.4066] [ 3018] [depth= 3] . ( 15 sec) [ -14068.8867] [ 3007] [depth= 10] . ( 15 sec) [ -13850.5435] [ 2998] [depth= 1] . ( 16 sec) [ -13519.8686] [ 2950] [depth= 7] . ( 16 sec) [ -13344.1468] [ 2915] [depth= 9] . ( 16 sec) [ -13322.6044] [ 2906] [depth= 1] . ( 17 sec) [ -13290.5706] [ 2893] [depth= 7] . ( 17 sec) [ -13144.8873] [ 2857] [depth= 10] . ( 18 sec) [ -13134.5775] [ 2854] [depth= 10] . ( 18 sec) [ -13115.3355] [ 2849] [depth= 3] . ( 19 sec) [ -13115.2888] [ 2849] [depth= 1] . ( 19 sec) [ -12962.6488] [ 2825] [depth= 1] . ( 19 sec) [ -12845.1987] [ 2821] [depth= 2] . ( 20 sec) [ -12775.7225] [ 2779] [depth= 1] . ( 20 sec) [ -12512.5658] [ 2773] [depth= 3] . ( 20 sec) [ -12490.7314] [ 2763] [depth= 3] . ( 21 sec) [ -12358.2282] [ 2756] [depth= 1] . ( 21 sec) [ -12308.4694] [ 2746] [depth= 2] . ( 21 sec) [ -12257.6191] [ 2719] [depth= 8] . ( 22 sec) [ -12244.9595] [ 2721] [depth= 1] . ( 22 sec) [ -12194.7384] [ 2729] [depth= 1] . ( 23 sec) [ -12191.0083] [ 2728] [depth= 1] . ( 23 sec) [ -12169.3787] [ 2729] [depth= 2] . ( 23 sec) [ -12165.3676] [ 2734] [depth= 1] . ( 24 sec) [ -12163.6481] [ 2733] [depth= 1] . ( 24 sec) [ -12158.0297] [ 2729] [depth= 1] . ( 25 sec) [ -12154.2781] [ 2724] [depth= 1] . ( 25 sec) [ -12139.6439] [ 2709] [depth= 10] . ( 27 sec) [ -12137.0829] [ 2700] [depth= 3] . ( 27 sec) [ -12136.3199] [ 2701] [depth= 1] . ( 27 sec) [ -12130.6309] [ 2700] [depth= 2] . ( 28 sec) [ -12129.6783] [ 2694] [depth= 1] . ( 29 sec) [ -12121.5005] [ 2689] [depth= 1] . ( 31 sec) [ -12120.1914] [ 2694] [depth= 1] . ( 31 sec) [ -12102.0449] [ 2677] [depth= 4] . ( 31 sec) [ -12083.5112] [ 2673] [depth= 2] . ( 32 sec) [ -12079.9283] [ 2671] [depth= 1] . ( 33 sec) [ -11957.9124] [Branch lengths ] . ( 34 sec) [ -11900.2589] [Alpha ][ 1.000401] . ( 35 sec) [ -11900.0442] [ 2673] [depth= 1] . ( 37 sec) [ -11897.5171] [ 2672] [depth= 3] . ( 38 sec) [ -11893.2773] [ 2675] [depth= 1] . ( 38 sec) [ -11891.2947] [ 2676] [depth= 1] . ( 39 sec) [ -11891.1369] [ 2674] [depth= 1] . ( 42 sec) [ -11889.7599] [ 2674] [depth= 1] . ( 43 sec) [ -11887.0150] [ 2677] [depth= 1] . ( 44 sec) [ -11886.1937] [ 2678] [depth= 1] . ( 45 sec) [ -11885.0735] [ 2679] [depth= 2] . ( 45 sec) [ -11882.2095] [ 2684] [depth= 4] . ( 46 sec) [ -11881.2213] [ 2684] [depth= 1] . ( 47 sec) [ -11879.0137] [ 2689] [depth= 1] . ( 50 sec) [ -11876.9241] [ 2690] [depth= 1] . ( 51 sec) [ -11872.0991] [ 2684] [depth= 1] . ( 52 sec) [ -11871.2214] [ 2683] [depth= 1] . ( 52 sec) [ -11867.9401] [ 2677] [depth= 4] . ( 53 sec) [ -11867.6910] [ 2675] [depth= 1] . ( 53 sec) [ -11864.0310] [ 2676] [depth= 3] . ( 54 sec) [ -11859.5404] [ 2675] [depth= 1] . ( 54 sec) [ -11859.5302] [ 2673] [depth= 1] . ( 58 sec) [ -11858.6857] [ 2671] [depth= 2] . ( 65 sec) [ -11858.2123] [ 2667] [depth= 3] . ( 65 sec) [ -11857.0380] [ 2666] [depth= 1] . ( 69 sec) [ -11856.9786] [ 2666] [depth= 1] . ( 72 sec) [ -11815.6319] [Branch lengths ] . ( 73 sec) [ -11778.7892] [Alpha ][ 1.997772] . ( 81 sec) [ -11778.4959] [ 2668] [depth= 1] . ( 82 sec) [ -11777.9372] [ 2669] [depth= 1] . ( 86 sec) [ -11777.7169] [ 2674] [depth= 2] . ( 88 sec) [ -11770.2262] [ 2672] [depth= 4] . ( 92 sec) [ -11769.5377] [ 2673] [depth= 2] . ( 96 sec) [ -11769.0199] [ 2678] [depth= 1] . ( 97 sec) [ -11768.9383] [ 2675] [depth= 2] . ( 103 sec) [ -11768.5342] [ 2671] [depth= 1] . ( 110 sec) [ -11768.3525] [ 2670] [depth= 1] . ( 113 sec) [ -11745.9194] [Branch lengths ] . ( 113 sec) [ -11725.6728] [Alpha ][ 3.988353] . ( 117 sec) [ -11725.2646] [ 2670] [depth= 1] . ( 120 sec) [ -11724.9479] [ 2671] [depth= 1] . ( 121 sec) [ -11724.8348] [ 2671] [depth= 1] . ( 125 sec) [ -11723.5335] [ 2674] [depth= 1] . ( 125 sec) [ -11723.4952] [ 2677] [depth= 1] . ( 127 sec) [ -11722.9997] [ 2676] [depth= 1] . ( 137 sec) [ -11721.8048] [ 2670] [depth= 1] . ( 143 sec) [ -11721.5165] [ 2671] [depth= 1] . ( 150 sec) [ -11721.2092] [ 2673] [depth= 3] . ( 152 sec) [ -11715.6085] [Branch lengths ] . ( 153 sec) [ -11713.0157] [Alpha ][ 5.781195] . ( 167 sec) [ -11712.7447] [ 2675] [depth= 1] . ( 204 sec) [ -11710.6962] [Branch lengths ] . ( 205 sec) [ -11710.6630] [Alpha ][ 6.045230] . ( 258 sec) [ -11709.8964] [Branch lengths ] . ( 258 sec) [ -11709.8964] [Topology ] . ( 261 sec) [ -11709.7062] [Topology ] . ( 263 sec) [ -11709.5929] [Topology ] . ( 265 sec) [ -11709.5120] [Topology ] . ( 268 sec) [ -11709.4521] [Topology ] . ( 270 sec) [ -11709.4076] [Topology ] . ( 272 sec) [ -11709.3739] [Topology ] . ( 273 sec) [ -11709.3609] [Alpha ][ 6.220225] . ( 273 sec) [ -11709.3609] [Topology ] . ( 275 sec) [ -11709.3320] [Topology ] . ( 278 sec) [ -11709.3112] [Topology ] . ( 280 sec) [ -11709.2956] [Topology ] . ( 282 sec) [ -11709.2837] [Topology ] . ( 285 sec) [ -11709.2745] [Topology ] . ( 287 sec) [ -11709.2674] [Topology ] . ( 287 sec) [ -11709.2661] [Alpha ][ 6.279569] . ( 287 sec) [ -11709.2661] [Topology ] . ( 290 sec) [ -11709.2601] [Topology ] . ( 292 sec) [ -11709.2555] [Topology ] . ( 294 sec) [ -11709.2519] [Topology ] . ( 297 sec) [ -11709.2490] [Topology ] . ( 299 sec) [ -11709.2471] [Topology ] . ( 301 sec) [ -11709.2460] [Topology ] . ( 302 sec) [ -11709.2458] [Alpha ][ 6.301504] . ( 302 sec) [ -11709.2458] [Topology ] . ( 304 sec) [ -11709.2450] [Topology ] . ( 305 sec) [ -11709.2449] [Alpha ][ 6.309573] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -11709.244922. . [Random start 5/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -19253.6298] [Alpha ][ 0.500960] . ( 1 sec) [ -18961.9133] [ 3652] [depth= 4] . ( 2 sec) [ -18617.6649] [ 3579] [depth= 5] . ( 2 sec) [ -17831.0854] [ 3569] [depth= 1] . ( 2 sec) [ -17473.7422] [ 3566] [depth= 1] . ( 3 sec) [ -17304.4912] [ 3543] [depth= 5] . ( 3 sec) [ -17006.3392] [ 3537] [depth= 1] . ( 3 sec) [ -16965.1910] [ 3452] [depth= 8] . ( 4 sec) [ -16555.3922] [ 3380] [depth= 12] . ( 4 sec) [ -16530.4023] [ 3385] [depth= 4] . ( 5 sec) [ -16402.1123] [ 3379] [depth= 9] . ( 5 sec) [ -16341.9102] [ 3330] [depth= 7] . ( 5 sec) [ -16182.7848] [ 3323] [depth= 1] . ( 6 sec) [ -16071.6349] [ 3231] [depth= 10] . ( 6 sec) [ -15916.5295] [ 3230] [depth= 1] . ( 6 sec) [ -15796.3991] [ 3225] [depth= 1] . ( 6 sec) [ -15726.3652] [ 3207] [depth= 13] . ( 7 sec) [ -15541.0892] [ 3194] [depth= 2] . ( 7 sec) [ -15515.1949] [ 3169] [depth= 9] . ( 8 sec) [ -15513.7787] [ 3171] [depth= 1] . ( 8 sec) [ -15427.4281] [ 3149] [depth= 7] . ( 8 sec) [ -15354.5025] [ 3148] [depth= 2] . ( 9 sec) [ -15164.6016] [ 3128] [depth= 11] . ( 9 sec) [ -15092.6825] [ 3123] [depth= 1] . ( 10 sec) [ -14983.6442] [ 3111] [depth= 8] . ( 10 sec) [ -14982.7398] [ 3109] [depth= 1] . ( 10 sec) [ -14854.9897] [ 3104] [depth= 1] . ( 10 sec) [ -14494.9368] [ 3054] [depth= 8] . ( 11 sec) [ -14417.4719] [ 3046] [depth= 1] . ( 11 sec) [ -14308.4455] [ 3029] [depth= 6] . ( 12 sec) [ -14281.2217] [ 3022] [depth= 3] . ( 12 sec) [ -14267.4040] [ 3017] [depth= 1] . ( 13 sec) [ -14219.5596] [ 3016] [depth= 1] . ( 13 sec) [ -14028.0625] [ 2992] [depth= 3] . ( 13 sec) [ -13948.4869] [ 2980] [depth= 5] . ( 13 sec) [ -13873.2306] [ 2955] [depth= 1] . ( 14 sec) [ -13836.7761] [ 2953] [depth= 1] . ( 14 sec) [ -13784.4144] [ 2953] [depth= 1] . ( 14 sec) [ -13709.6930] [ 2911] [depth= 10] . ( 15 sec) [ -13643.3403] [ 2886] [depth= 1] . ( 16 sec) [ -13635.6900] [ 2887] [depth= 1] . ( 16 sec) [ -13629.4170] [ 2886] [depth= 1] . ( 16 sec) [ -13483.7241] [ 2867] [depth= 3] . ( 17 sec) [ -13445.4549] [ 2858] [depth= 5] . ( 17 sec) [ -13438.6738] [ 2858] [depth= 2] . ( 17 sec) [ -13309.9085] [ 2856] [depth= 3] . ( 18 sec) [ -13248.1059] [ 2857] [depth= 1] . ( 19 sec) [ -13232.4814] [ 2862] [depth= 1] . ( 19 sec) [ -13227.2954] [ 2855] [depth= 5] . ( 19 sec) [ -13079.5732] [ 2855] [depth= 1] . ( 20 sec) [ -13063.1757] [ 2855] [depth= 1] . ( 20 sec) [ -13052.5986] [ 2835] [depth= 13] . ( 21 sec) [ -13043.7897] [ 2840] [depth= 1] . ( 21 sec) [ -13035.6260] [ 2840] [depth= 2] . ( 21 sec) [ -13032.5418] [ 2837] [depth= 1] . ( 22 sec) [ -12979.2988] [ 2819] [depth= 4] . ( 22 sec) [ -12978.4933] [ 2816] [depth= 1] . ( 22 sec) [ -12936.7605] [ 2807] [depth= 6] . ( 23 sec) [ -12923.3510] [ 2808] [depth= 1] . ( 23 sec) [ -12922.7282] [ 2807] [depth= 1] . ( 23 sec) [ -12841.3435] [ 2809] [depth= 6] . ( 24 sec) [ -12778.1349] [ 2805] [depth= 12] . ( 24 sec) [ -12707.4535] [ 2794] [depth= 10] . ( 25 sec) [ -12647.2483] [ 2796] [depth= 4] . ( 25 sec) [ -12624.6921] [ 2777] [depth= 2] . ( 25 sec) [ -12576.6359] [ 2768] [depth= 3] . ( 26 sec) [ -12539.1085] [ 2768] [depth= 1] . ( 26 sec) [ -12494.3286] [ 2762] [depth= 1] . ( 27 sec) [ -12488.6336] [ 2757] [depth= 1] . ( 28 sec) [ -12467.2192] [ 2745] [depth= 1] . ( 28 sec) [ -12298.4825] [ 2719] [depth= 1] . ( 29 sec) [ -12228.4910] [ 2688] [depth= 1] . ( 29 sec) [ -12223.5091] [ 2691] [depth= 1] . ( 30 sec) [ -12178.1134] [ 2686] [depth= 3] . ( 30 sec) [ -12170.4092] [ 2687] [depth= 1] . ( 31 sec) [ -12169.2157] [ 2699] [depth= 1] . ( 32 sec) [ -11985.3618] [Branch lengths ] . ( 33 sec) [ -11925.2055] [Alpha ][ 1.000401] . ( 34 sec) [ -11922.8799] [ 2685] [depth= 3] . ( 36 sec) [ -11918.2507] [ 2686] [depth= 1] . ( 37 sec) [ -11915.8253] [ 2685] [depth= 1] . ( 38 sec) [ -11911.5942] [ 2689] [depth= 2] . ( 38 sec) [ -11905.1467] [ 2686] [depth= 1] . ( 39 sec) [ -11902.9492] [ 2687] [depth= 1] . ( 39 sec) [ -11902.5182] [ 2681] [depth= 1] . ( 43 sec) [ -11896.4276] [ 2680] [depth= 1] . ( 44 sec) [ -11895.4969] [ 2685] [depth= 1] . ( 44 sec) [ -11894.3092] [ 2686] [depth= 1] . ( 47 sec) [ -11891.0602] [ 2682] [depth= 3] . ( 53 sec) [ -11889.7927] [ 2680] [depth= 1] . ( 56 sec) [ -11878.9702] [ 2675] [depth= 6] . ( 57 sec) [ -11878.5601] [ 2678] [depth= 1] . ( 58 sec) [ -11878.5351] [ 2673] [depth= 1] . ( 60 sec) [ -11872.3954] [ 2662] [depth= 3] . ( 60 sec) [ -11871.2849] [ 2664] [depth= 1] . ( 61 sec) [ -11869.2481] [ 2664] [depth= 1] . ( 62 sec) [ -11867.4059] [ 2666] [depth= 2] . ( 64 sec) [ -11863.0253] [ 2666] [depth= 1] . ( 65 sec) [ -11860.1610] [ 2667] [depth= 2] . ( 66 sec) [ -11860.1325] [ 2670] [depth= 1] . ( 67 sec) [ -11858.4626] [ 2674] [depth= 1] . ( 74 sec) [ -11817.3264] [Branch lengths ] . ( 74 sec) [ -11776.6730] [Alpha ][ 1.997772] . ( 76 sec) [ -11776.2942] [ 2675] [depth= 1] . ( 79 sec) [ -11774.5701] [ 2671] [depth= 2] . ( 81 sec) [ -11773.3216] [ 2674] [depth= 2] . ( 97 sec) [ -11773.0844] [ 2674] [depth= 1] . ( 98 sec) [ -11772.5642] [ 2669] [depth= 1] . ( 99 sec) [ -11771.9948] [ 2671] [depth= 1] . ( 105 sec) [ -11770.6648] [ 2664] [depth= 6] . ( 106 sec) [ -11769.1278] [ 2666] [depth= 1] . ( 109 sec) [ -11768.6792] [ 2666] [depth= 1] . ( 109 sec) [ -11768.3627] [ 2667] [depth= 1] . ( 111 sec) [ -11768.3158] [ 2667] [depth= 1] . ( 112 sec) [ -11767.5029] [ 2665] [depth= 1] . ( 113 sec) [ -11765.8780] [ 2665] [depth= 1] . ( 122 sec) [ -11743.2792] [Branch lengths ] . ( 122 sec) [ -11722.1259] [Alpha ][ 3.989972] . ( 128 sec) [ -11720.7862] [ 2665] [depth= 2] . ( 145 sec) [ -11720.4098] [ 2665] [depth= 1] . ( 164 sec) [ -11716.1817] [Branch lengths ] . ( 164 sec) [ -11713.9682] [Alpha ][ 5.638200] . ( 176 sec) [ -11713.7835] [ 2664] [depth= 2] . ( 206 sec) [ -11712.5084] [Branch lengths ] . ( 207 sec) [ -11712.4684] [Alpha ][ 5.918865] . ( 251 sec) [ -11712.0886] [Branch lengths ] . ( 251 sec) [ -11712.0886] [Topology ] . ( 254 sec) [ -11711.1049] [Topology ] . ( 256 sec) [ -11710.1815] [Topology ] . ( 258 sec) [ -11709.8233] [Topology ] . ( 261 sec) [ -11709.6137] [Topology ] . ( 263 sec) [ -11709.4924] [Topology ] . ( 265 sec) [ -11709.4186] [Topology ] . ( 268 sec) [ -11709.3737] [Topology ] . ( 268 sec) [ -11709.3493] [Alpha ][ 6.153970] . ( 268 sec) [ -11709.3493] [Topology ] . ( 271 sec) [ -11709.3180] [Topology ] . ( 273 sec) [ -11709.2996] [Topology ] . ( 275 sec) [ -11709.2881] [Topology ] . ( 278 sec) [ -11709.2807] [Topology ] . ( 280 sec) [ -11709.2759] [Topology ] . ( 282 sec) [ -11709.2727] [Topology ] . ( 283 sec) [ -11709.2719] [Alpha ][ 6.197425] . ( 283 sec) [ -11709.2719] [Topology ] . ( 285 sec) [ -11709.2696] [Topology ] . ( 288 sec) [ -11709.2680] [Topology ] . ( 290 sec) [ -11709.2669] [Topology ] . ( 292 sec) [ -11709.2661] [Topology ] . ( 293 sec) [ -11709.2661] [Alpha ][ 6.204608] . ( 293 sec) [ -11709.2661] [Topology ] . ( 295 sec) [ -11709.2655] [Topology ] . ( 296 sec) [ -11709.2655] [Alpha ][ 6.210813] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -11709.265523. . Computing pairwise distances... . Building BioNJ tree... . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -12114.3207] [Alpha ][ 1.997534] . ( 1 sec) [ -12114.3207] [Topology ] . ( 3 sec) [ -11847.1433] [Topology ] . ( 5 sec) [ -11810.2247] [Topology ] . ( 7 sec) [ -11796.2352] [Topology ] . ( 9 sec) [ -11790.5252] [Topology ] . ( 11 sec) [ -11788.1025] [Topology ] . ( 13 sec) [ -11786.3193] [Topology ] . ( 15 sec) [ -11785.5495] [Topology ] . ( 17 sec) [ -11784.6404] [Topology ] . ( 19 sec) [ -11784.4428] [Topology ] . ( 22 sec) [ -11768.0697] [Alpha ][ 3.989233] . ( 22 sec) [ -11768.0697] [Topology ] . ( 24 sec) [ -11766.7822] [Topology ] . ( 26 sec) [ -11765.7933] [Topology ] . ( 28 sec) [ -11762.8575] [Topology ] . ( 31 sec) [ -11751.5301] [Topology ] . ( 33 sec) [ -11737.3391] [Topology ] . ( 35 sec) [ -11732.6310] [Topology ] . ( 37 sec) [ -11730.8705] [Topology ] . ( 40 sec) [ -11729.8731] [Topology ] . ( 42 sec) [ -11729.3523] [Topology ] . Checking for NNIs, optimizing five branches... . ( 70 sec) [ -11728.4647] [Topology ] . ( 70 sec) [ -11726.0651] [Alpha ][ 5.641331] . ( 71 sec) [ -11726.0651] [Topology ] . ( 73 sec) [ -11725.2420] [Topology ] . ( 75 sec) [ -11724.9469] [Topology ] . ( 77 sec) [ -11724.7936] [Topology ] . ( 80 sec) [ -11724.7028] [Topology ] . ( 82 sec) [ -11724.6433] [Topology ] . ( 84 sec) [ -11724.6014] [Topology ] . Checking for NNIs, optimizing five branches... . ( 111 sec) [ -11724.0547] [Topology ] . ( 112 sec) [ -11723.8042] [Alpha ][ 6.378908] . ( 112 sec) [ -11723.8042] [Topology ] . ( 114 sec) [ -11723.5699] [Topology ] . ( 116 sec) [ -11723.5038] [Topology ] . ( 119 sec) [ -11723.4695] [Topology ] . ( 121 sec) [ -11723.4462] [Topology ] . ( 123 sec) [ -11723.4284] [Topology ] . ( 126 sec) [ -11723.4139] [Topology ] . Checking for NNIs, optimizing five branches... . ( 150 sec) [ -11723.4136] [Topology ] . ( 151 sec) [ -11723.3871] [Alpha ][ 6.650675] . ( 151 sec) [ -11723.3871] [Topology ] . ( 153 sec) [ -11723.3677] [Topology ] . ( 156 sec) [ -11723.3473] [Topology ] . ( 158 sec) [ -11723.3235] [Topology ] . ( 160 sec) [ -11723.3043] [Topology ] . ( 162 sec) [ -11723.2885] [Topology ] . ( 165 sec) [ -11723.2756] [Topology ] . Checking for NNIs, optimizing five branches... . ( 190 sec) [ -11723.2744] [Alpha ][ 6.711318] . ( 190 sec) [ -11723.2744] [Topology ] . ( 193 sec) [ -11723.2635] [Topology ] . ( 195 sec) [ -11723.2547] [Topology ] . ( 197 sec) [ -11723.2475] [Topology ] . ( 199 sec) [ -11723.2417] [Topology ] . ( 202 sec) [ -11723.2369] [Topology ] . ( 204 sec) [ -11723.2330] [Topology ] . Checking for NNIs, optimizing five branches... . ( 229 sec) [ -11723.2328] [Alpha ][ 6.735009] . ( 229 sec) [ -11723.2328] [Topology ] . ( 231 sec) [ -11723.2296] [Topology ] . ( 234 sec) [ -11723.2271] [Topology ] . ( 236 sec) [ -11723.2250] [Topology ] . ( 238 sec) [ -11723.2233] [Topology ] . ( 241 sec) [ -11723.2220] [Topology ] . ( 243 sec) [ -11723.2209] [Topology ] . Checking for NNIs, optimizing five branches... . ( 267 sec) [ -11723.2208] [Alpha ][ 6.745605] . ( 268 sec) [ -11723.2208] [Topology ] . ( 270 sec) [ -11723.2199] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 319 sec) [ -12114.3207] [Alpha ][ 1.997534] . ( 320 sec) [ -12110.8932] [ 2680] [depth= 1] . ( 320 sec) [ -12110.4070] [ 2682] [depth= 1] . ( 321 sec) [ -12110.2346] [ 2680] [depth= 1] . ( 321 sec) [ -12100.5882] [ 2676] [depth= 1] . ( 322 sec) [ -12099.5999] [ 2677] [depth= 1] . ( 322 sec) [ -12070.9114] [ 2680] [depth= 2] . ( 323 sec) [ -12069.5901] [ 2680] [depth= 1] . ( 323 sec) [ -12037.4390] [ 2679] [depth= 1] . ( 323 sec) [ -12032.5684] [ 2679] [depth= 1] . ( 325 sec) [ -12029.4027] [ 2678] [depth= 1] . ( 331 sec) [ -12029.3224] [ 2682] [depth= 1] . ( 332 sec) [ -12026.5579] [ 2685] [depth= 1] . ( 333 sec) [ -11996.3150] [ 2682] [depth= 1] . ( 334 sec) [ -11996.3034] [ 2675] [depth= 3] . ( 335 sec) [ -11995.8486] [ 2674] [depth= 1] . ( 335 sec) [ -11994.3122] [ 2674] [depth= 2] . ( 336 sec) [ -11980.3131] [ 2675] [depth= 2] . ( 337 sec) [ -11971.4374] [ 2677] [depth= 4] . ( 337 sec) [ -11958.0486] [ 2677] [depth= 3] . ( 338 sec) [ -11952.8312] [ 2674] [depth= 2] . ( 338 sec) [ -11949.9584] [ 2676] [depth= 1] . ( 338 sec) [ -11939.1935] [ 2678] [depth= 1] . ( 341 sec) [ -11896.9614] [ 2676] [depth= 1] . ( 341 sec) [ -11893.9444] [ 2679] [depth= 1] . ( 342 sec) [ -11890.3046] [ 2682] [depth= 1] . ( 342 sec) [ -11889.1187] [ 2681] [depth= 1] . ( 343 sec) [ -11858.9227] [ 2684] [depth= 1] . ( 343 sec) [ -11853.8631] [ 2681] [depth= 1] . ( 343 sec) [ -11849.8898] [ 2683] [depth= 1] . ( 344 sec) [ -11844.4896] [ 2691] [depth= 1] . ( 344 sec) [ -11837.9036] [ 2691] [depth= 4] . ( 345 sec) [ -11836.1449] [ 2694] [depth= 1] . ( 345 sec) [ -11830.5738] [ 2682] [depth= 3] . ( 345 sec) [ -11828.3091] [ 2677] [depth= 2] . ( 346 sec) [ -11826.3234] [ 2675] [depth= 1] . ( 347 sec) [ -11825.0977] [ 2679] [depth= 3] . ( 348 sec) [ -11820.4917] [ 2682] [depth= 3] . ( 349 sec) [ -11818.6907] [ 2684] [depth= 2] . ( 349 sec) [ -11817.3830] [ 2685] [depth= 1] . ( 350 sec) [ -11815.5880] [ 2684] [depth= 1] . ( 350 sec) [ -11815.0178] [ 2681] [depth= 3] . ( 351 sec) [ -11814.5392] [ 2681] [depth= 3] . ( 352 sec) [ -11811.3536] [ 2685] [depth= 4] . ( 353 sec) [ -11780.1590] [Branch lengths ] . ( 354 sec) [ -11759.9574] [Alpha ][ 3.990621] . ( 357 sec) [ -11736.7077] [ 2679] [depth= 1] . ( 358 sec) [ -11736.2167] [ 2683] [depth= 1] . ( 358 sec) [ -11735.7741] [ 2683] [depth= 1] . ( 365 sec) [ -11735.4868] [ 2685] [depth= 1] . ( 370 sec) [ -11735.1508] [ 2682] [depth= 2] . ( 372 sec) [ -11734.5591] [ 2683] [depth= 2] . ( 373 sec) [ -11734.1263] [ 2687] [depth= 1] . ( 376 sec) [ -11734.1143] [ 2685] [depth= 1] . ( 378 sec) [ -11733.4633] [ 2680] [depth= 1] . ( 380 sec) [ -11731.9379] [ 2676] [depth= 4] . ( 381 sec) [ -11731.1082] [ 2679] [depth= 7] . ( 385 sec) [ -11729.8617] [ 2680] [depth= 1] . ( 385 sec) [ -11727.3337] [ 2669] [depth= 4] . ( 386 sec) [ -11727.1254] [ 2671] [depth= 3] . ( 386 sec) [ -11726.6312] [ 2678] [depth= 1] . ( 392 sec) [ -11726.5293] [ 2679] [depth= 2] . ( 393 sec) [ -11726.4940] [ 2679] [depth= 1] . ( 394 sec) [ -11716.7434] [Branch lengths ] . ( 394 sec) [ -11714.9961] [Alpha ][ 5.388255] . ( 397 sec) [ -11714.9716] [ 2677] [depth= 1] . ( 419 sec) [ -11714.9531] [ 2674] [depth= 1] . ( 421 sec) [ -11714.7916] [ 2675] [depth= 1] . ( 424 sec) [ -11714.7552] [ 2680] [depth= 1] . ( 427 sec) [ -11714.3590] [ 2680] [depth= 1] . ( 428 sec) [ -11714.3341] [ 2682] [depth= 1] . ( 429 sec) [ -11713.9644] [ 2681] [depth= 2] . ( 437 sec) [ -11713.5023] [ 2681] [depth= 2] . ( 439 sec) [ -11710.9663] [Branch lengths ] . ( 439 sec) [ -11710.7946] [Alpha ][ 5.948914] . ( 443 sec) [ -11710.6128] [ 2682] [depth= 1] . ( 443 sec) [ -11710.5781] [ 2675] [depth= 1] . ( 492 sec) [ -11710.5592] [ 2680] [depth= 2] . ( 493 sec) [ -11709.1816] [Branch lengths ] . ( 493 sec) [ -11709.1557] [Alpha ][ 6.191678] . ( 551 sec) [ -11708.6791] [Branch lengths ] . ( 552 sec) [ -11708.6791] [Topology ] . ( 554 sec) [ -11708.5810] [Topology ] . ( 556 sec) [ -11708.5284] [Topology ] . ( 559 sec) [ -11708.5028] [Topology ] . ( 561 sec) [ -11708.4928] [Topology ] . ( 563 sec) [ -11708.4890] [Topology ] . ( 565 sec) [ -11708.4871] [Topology ] . ( 566 sec) [ -11708.4800] [Alpha ][ 6.322708] . ( 566 sec) [ -11708.4800] [Topology ] . ( 568 sec) [ -11708.4777] [Topology ] . ( 571 sec) [ -11708.4767] [Topology ] . ( 573 sec) [ -11708.4761] [Topology ] . ( 573 sec) [ -11708.4757] [Alpha ][ 6.353911] . ( 574 sec) [ -11708.4757] [Topology ] . ( 576 sec) [ -11708.4752] [Topology ] . ( 576 sec) [ -11708.4752] [Alpha ][ 6.360265] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -11723.219946 . Log likelihood obtained after SPR moves : -11708.475193 . Log likelihood of the current tree: -11708.475193. . Printing the most likely tree in file 'proteic_M2363_38x251_2004.phy_phyml_tree.txt'... . Best log likelihood : -11708.475193 . Time used 0h10m3s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 2399.16user 0.00system 40:03.36elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps