.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2624_139x348_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : yes . Number of random starting trees : 5 . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 347 patterns found. (out of a total of 348 sites) . 60 sites without polymorphism (17.24%). . [Random start 1/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . WARNING: this analysis will use at least 120Mo of memory space... . Maximizing likelihood (using SPR moves)... . ( 4 sec) [ -31416.2304] [Alpha ][ 0.500960] . ( 7 sec) [ -31324.5236] [ 4982] [depth= 4] . ( 8 sec) [ -31249.6913] [ 4968] [depth= 12] . ( 9 sec) [ -31228.3980] [ 4968] [depth= 1] . ( 11 sec) [ -31138.4169] [ 4963] [depth= 7] . ( 12 sec) [ -31136.2066] [ 4964] [depth= 1] . ( 13 sec) [ -30940.4610] [ 4947] [depth= 15] . ( 14 sec) [ -30924.1482] [ 4948] [depth= 1] . ( 16 sec) [ -30847.1848] [ 4942] [depth= 11] . ( 17 sec) [ -30725.0330] [ 4934] [depth= 2] . ( 18 sec) [ -30648.5226] [ 4920] [depth= 11] . ( 20 sec) [ -30599.2996] [ 4917] [depth= 1] . ( 21 sec) [ -30544.0392] [ 4914] [depth= 7] . ( 22 sec) [ -30492.9453] [ 4901] [depth= 1] . ( 23 sec) [ -30458.6816] [ 4898] [depth= 10] . ( 25 sec) [ -30451.2849] [ 4898] [depth= 1] . ( 26 sec) [ -30420.7822] [ 4896] [depth= 6] . ( 27 sec) [ -30401.5449] [ 4890] [depth= 8] . ( 28 sec) [ -30348.6897] [ 4891] [depth= 1] . ( 30 sec) [ -30282.0691] [ 4885] [depth= 15] . ( 31 sec) [ -30244.3817] [ 4885] [depth= 1] . ( 32 sec) [ -30154.6703] [ 4875] [depth= 2] . ( 34 sec) [ -30062.8239] [ 4856] [depth= 22] . ( 35 sec) [ -29986.0426] [ 4845] [depth= 18] . ( 37 sec) [ -29953.5732] [ 4842] [depth= 9] . ( 38 sec) [ -29906.6299] [ 4836] [depth= 17] . ( 39 sec) [ -29895.0792] [ 4835] [depth= 2] . ( 41 sec) [ -29873.9517] [ 4829] [depth= 2] . ( 42 sec) [ -29059.0433] [ 4725] [depth= 6] . ( 44 sec) [ -28868.2168] [ 4692] [depth= 6] . ( 45 sec) [ -28736.4542] [ 4657] [depth= 23] . ( 47 sec) [ -28432.7256] [ 4644] [depth= 22] . ( 48 sec) [ -28404.5938] [ 4635] [depth= 2] . ( 50 sec) [ -28313.6818] [ 4623] [depth= 17] . ( 51 sec) [ -28307.9348] [ 4623] [depth= 2] . ( 52 sec) [ -28285.3273] [ 4620] [depth= 12] . ( 53 sec) [ -28241.6699] [ 4621] [depth= 1] . ( 55 sec) [ -28217.7367] [ 4613] [depth= 1] . ( 56 sec) [ -28201.3484] [ 4610] [depth= 9] . ( 58 sec) [ -28130.5798] [ 4593] [depth= 6] . ( 59 sec) [ -27966.3201] [ 4586] [depth= 1] . ( 61 sec) [ -27773.7176] [ 4507] [depth= 9] . ( 62 sec) [ -27667.5247] [ 4507] [depth= 16] . ( 64 sec) [ -27596.4635] [ 4500] [depth= 12] . ( 65 sec) [ -27339.8470] [ 4454] [depth= 5] . ( 67 sec) [ -27067.6124] [ 4430] [depth= 7] . ( 68 sec) [ -27047.8280] [ 4438] [depth= 21] . ( 70 sec) [ -27040.0943] [ 4436] [depth= 1] . ( 72 sec) [ -26938.4320] [ 4426] [depth= 21] . ( 73 sec) [ -26913.6332] [ 4425] [depth= 15] . ( 75 sec) [ -26903.1137] [ 4423] [depth= 6] . ( 76 sec) [ -26506.0433] [ 4419] [depth= 4] . ( 77 sec) [ -26502.8892] [ 4415] [depth= 8] . ( 79 sec) [ -26497.5444] [ 4413] [depth= 5] . ( 80 sec) [ -26470.2137] [ 4410] [depth= 1] . ( 81 sec) [ -26467.4116] [ 4402] [depth= 9] . ( 82 sec) [ -26432.4722] [ 4400] [depth= 13] . ( 84 sec) [ -26360.9671] [ 4385] [depth= 3] . ( 85 sec) [ -26317.5541] [ 4377] [depth= 14] . ( 86 sec) [ -26283.1856] [ 4376] [depth= 3] . ( 88 sec) [ -26179.1877] [ 4375] [depth= 2] . ( 90 sec) [ -26166.9366] [ 4379] [depth= 8] . ( 92 sec) [ -26055.3704] [ 4358] [depth= 1] . ( 93 sec) [ -25907.8616] [ 4334] [depth= 14] . ( 97 sec) [ -25765.2065] [ 4305] [depth= 24] . ( 98 sec) [ -25756.1779] [ 4305] [depth= 2] . ( 100 sec) [ -25671.7103] [ 4297] [depth= 18] . ( 101 sec) [ -25639.3858] [ 4296] [depth= 2] . ( 103 sec) [ -25301.5148] [ 4290] [depth= 23] . ( 104 sec) [ -25036.3183] [ 4235] [depth= 14] . ( 106 sec) [ -24994.1535] [ 4231] [depth= 6] . ( 107 sec) [ -24980.3659] [ 4225] [depth= 1] . ( 108 sec) [ -24958.0366] [ 4225] [depth= 10] . ( 109 sec) [ -24825.1713] [ 4219] [depth= 1] . ( 111 sec) [ -24781.3408] [ 4208] [depth= 7] . ( 112 sec) [ -24709.0523] [ 4197] [depth= 4] . ( 113 sec) [ -24686.9541] [ 4197] [depth= 1] . ( 115 sec) [ -24667.1686] [ 4192] [depth= 3] . ( 116 sec) [ -24518.4573] [ 4153] [depth= 7] . ( 117 sec) [ -24357.7279] [ 4145] [depth= 11] . ( 118 sec) [ -24346.8498] [ 4145] [depth= 1] . ( 120 sec) [ -24289.4217] [ 4132] [depth= 2] . ( 121 sec) [ -24131.9208] [ 4123] [depth= 6] . ( 122 sec) [ -23789.0586] [ 4124] [depth= 1] . ( 124 sec) [ -23674.7445] [ 4095] [depth= 13] . ( 125 sec) [ -23668.3243] [ 4095] [depth= 1] . ( 127 sec) [ -23460.3149] [ 4058] [depth= 26] . ( 128 sec) [ -23456.9364] [ 4059] [depth= 3] . ( 130 sec) [ -23454.1696] [ 4060] [depth= 1] . ( 131 sec) [ -23293.0392] [ 4019] [depth= 24] . ( 133 sec) [ -23285.5835] [ 4019] [depth= 2] . ( 134 sec) [ -23275.7536] [ 4015] [depth= 6] . ( 135 sec) [ -23210.0768] [ 4007] [depth= 3] . ( 136 sec) [ -23187.7507] [ 4005] [depth= 4] . ( 138 sec) [ -23168.8286] [ 4000] [depth= 6] . ( 139 sec) [ -23157.7828] [ 3996] [depth= 10] . ( 141 sec) [ -23142.7681] [ 3996] [depth= 1] . ( 142 sec) [ -23135.6013] [ 3996] [depth= 1] . ( 143 sec) [ -22983.1635] [ 3998] [depth= 1] . ( 145 sec) [ -22933.6893] [ 3998] [depth= 3] . ( 146 sec) [ -22913.7269] [ 3994] [depth= 5] . ( 148 sec) [ -22865.5133] [ 3995] [depth= 14] . ( 149 sec) [ -22494.7595] [ 3914] [depth= 15] . ( 151 sec) [ -22473.4266] [ 3906] [depth= 7] . ( 152 sec) [ -22469.7470] [ 3907] [depth= 1] . ( 154 sec) [ -22458.5913] [ 3904] [depth= 2] . ( 155 sec) [ -22432.8652] [ 3898] [depth= 3] . ( 156 sec) [ -22407.5476] [ 3897] [depth= 2] . ( 157 sec) [ -22396.9928] [ 3897] [depth= 1] . ( 159 sec) [ -22011.9050] [ 3885] [depth= 21] . ( 160 sec) [ -21911.4986] [ 3862] [depth= 3] . ( 162 sec) [ -21910.7231] [ 3862] [depth= 1] . ( 164 sec) [ -21866.0711] [ 3850] [depth= 15] . ( 165 sec) [ -21805.8349] [ 3834] [depth= 6] . ( 166 sec) [ -21690.0528] [ 3815] [depth= 2] . ( 168 sec) [ -21623.1138] [ 3812] [depth= 13] . ( 169 sec) [ -21619.6348] [ 3811] [depth= 2] . ( 170 sec) [ -21614.3112] [ 3810] [depth= 3] . ( 173 sec) [ -21612.7536] [ 3808] [depth= 1] . ( 174 sec) [ -21609.6046] [ 3809] [depth= 2] . ( 176 sec) [ -21530.5302] [ 3793] [depth= 4] . ( 177 sec) [ -21525.2136] [ 3792] [depth= 1] . ( 179 sec) [ -21223.6123] [ 3697] [depth= 16] . ( 180 sec) [ -21217.8256] [ 3692] [depth= 4] . ( 181 sec) [ -21212.4051] [ 3690] [depth= 1] . ( 183 sec) [ -21208.8037] [ 3689] [depth= 1] . ( 184 sec) [ -21193.7681] [ 3689] [depth= 2] . ( 186 sec) [ -21188.0431] [ 3689] [depth= 3] . ( 187 sec) [ -21148.6032] [ 3686] [depth= 18] . ( 189 sec) [ -21141.9736] [ 3684] [depth= 6] . ( 190 sec) [ -21133.8638] [ 3685] [depth= 1] . ( 195 sec) [ -21129.7612] [ 3686] [depth= 2] . ( 197 sec) [ -21035.9980] [ 3686] [depth= 3] . ( 198 sec) [ -21020.7329] [ 3684] [depth= 14] . ( 199 sec) [ -20992.2207] [ 3678] [depth= 6] . ( 201 sec) [ -20933.9540] [ 3678] [depth= 1] . ( 202 sec) [ -20916.1157] [ 3677] [depth= 2] . ( 203 sec) [ -20914.5697] [ 3677] [depth= 1] . ( 204 sec) [ -20909.4273] [ 3675] [depth= 1] . ( 206 sec) [ -20903.9037] [ 3674] [depth= 10] . ( 207 sec) [ -20856.9930] [ 3668] [depth= 2] . ( 208 sec) [ -20828.3732] [ 3664] [depth= 11] . ( 210 sec) [ -20797.2963] [ 3655] [depth= 16] . ( 211 sec) [ -20738.2218] [ 3645] [depth= 2] . ( 212 sec) [ -20698.9427] [ 3637] [depth= 6] . ( 213 sec) [ -20690.5639] [ 3635] [depth= 1] . ( 215 sec) [ -20681.8858] [ 3634] [depth= 1] . ( 216 sec) [ -20634.4442] [ 3626] [depth= 4] . ( 218 sec) [ -20613.8744] [ 3617] [depth= 10] . ( 220 sec) [ -20611.0446] [ 3618] [depth= 3] . ( 221 sec) [ -20586.8192] [ 3614] [depth= 4] . ( 222 sec) [ -20485.3928] [ 3594] [depth= 15] . ( 225 sec) [ -20483.1822] [ 3593] [depth= 1] . ( 227 sec) [ -20229.0987] [ 3537] [depth= 18] . ( 228 sec) [ -20142.3179] [ 3537] [depth= 1] . ( 229 sec) [ -20071.5244] [ 3513] [depth= 20] . ( 230 sec) [ -19892.7836] [ 3482] [depth= 9] . ( 232 sec) [ -19808.4723] [ 3483] [depth= 4] . ( 234 sec) [ -19738.4963] [ 3453] [depth= 19] . ( 236 sec) [ -19701.6571] [ 3452] [depth= 19] . ( 236 sec) [ -19603.2572] [ 3441] [depth= 1] . ( 238 sec) [ -19535.1524] [ 3397] [depth= 17] . ( 239 sec) [ -19344.1155] [ 3387] [depth= 13] . ( 240 sec) [ -19339.3116] [ 3386] [depth= 1] . ( 242 sec) [ -19279.2120] [ 3382] [depth= 17] . ( 244 sec) [ -19091.3499] [ 3345] [depth= 22] . ( 246 sec) [ -18793.7227] [ 3274] [depth= 20] . ( 247 sec) [ -18623.0167] [ 3248] [depth= 19] . ( 249 sec) [ -18613.9579] [ 3240] [depth= 2] . ( 250 sec) [ -18612.9003] [ 3240] [depth= 1] . ( 252 sec) [ -18495.8026] [ 3231] [depth= 16] . ( 253 sec) [ -18487.5773] [ 3231] [depth= 1] . ( 255 sec) [ -18346.5735] [ 3177] [depth= 6] . ( 256 sec) [ -18344.5587] [ 3177] [depth= 1] . ( 257 sec) [ -18336.6911] [ 3174] [depth= 22] . ( 258 sec) [ -18333.3156] [ 3173] [depth= 1] . ( 260 sec) [ -18291.4936] [ 3167] [depth= 7] . ( 263 sec) [ -18238.8500] [ 3156] [depth= 18] . ( 264 sec) [ -18213.1318] [ 3156] [depth= 2] . ( 266 sec) [ -18149.8978] [ 3144] [depth= 5] . ( 268 sec) [ -18128.7872] [ 3140] [depth= 8] . ( 269 sec) [ -17907.8870] [ 3118] [depth= 12] . ( 271 sec) [ -17907.2904] [ 3118] [depth= 1] . ( 272 sec) [ -17853.1521] [ 3104] [depth= 23] . ( 273 sec) [ -17811.5152] [ 3094] [depth= 1] . ( 275 sec) [ -17735.0187] [ 3082] [depth= 19] . ( 276 sec) [ -17701.7535] [ 3074] [depth= 2] . ( 277 sec) [ -17660.5953] [ 3067] [depth= 5] . ( 279 sec) [ -17638.9988] [ 3068] [depth= 1] . ( 281 sec) [ -17634.6322] [ 3068] [depth= 1] . ( 282 sec) [ -17610.3538] [ 3068] [depth= 1] . ( 283 sec) [ -17598.4006] [ 3065] [depth= 6] . ( 285 sec) [ -17577.0736] [ 3062] [depth= 6] . ( 286 sec) [ -17565.7904] [ 3060] [depth= 6] . ( 288 sec) [ -17562.0742] [ 3059] [depth= 11] . ( 292 sec) [ -17556.9721] [ 3056] [depth= 9] . ( 294 sec) [ -17545.8002] [ 3053] [depth= 18] . ( 296 sec) [ -17535.1046] [ 3056] [depth= 1] . ( 301 sec) [ -17505.6013] [ 3053] [depth= 16] . ( 302 sec) [ -17477.8810] [ 3052] [depth= 3] . ( 304 sec) [ -17459.9807] [ 3045] [depth= 8] . ( 305 sec) [ -17392.5642] [ 3031] [depth= 20] . ( 306 sec) [ -17386.5513] [ 3030] [depth= 3] . ( 308 sec) [ -17386.1257] [ 3031] [depth= 1] . ( 310 sec) [ -17367.1534] [ 3030] [depth= 1] . ( 311 sec) [ -17316.6371] [ 3018] [depth= 7] . ( 312 sec) [ -17306.7590] [ 3017] [depth= 3] . ( 314 sec) [ -17306.2580] [ 3017] [depth= 1] . ( 315 sec) [ -17302.8315] [ 3015] [depth= 4] . ( 319 sec) [ -17243.9116] [ 3019] [depth= 7] . ( 322 sec) [ -17218.5922] [ 3014] [depth= 15] . ( 324 sec) [ -17202.1765] [ 3012] [depth= 2] . ( 325 sec) [ -17194.3432] [ 3013] [depth= 2] . ( 327 sec) [ -17186.5928] [ 3009] [depth= 15] . ( 328 sec) [ -17176.7759] [ 3007] [depth= 3] . ( 329 sec) [ -17175.5324] [ 3008] [depth= 2] . ( 331 sec) [ -17069.7642] [ 3000] [depth= 10] . ( 332 sec) [ -17065.7274] [ 2997] [depth= 1] . ( 333 sec) [ -17055.7557] [ 2986] [depth= 5] . ( 335 sec) [ -17046.0194] [ 2980] [depth= 11] . ( 337 sec) [ -17005.6443] [ 2973] [depth= 11] . ( 338 sec) [ -16960.9063] [ 2974] [depth= 1] . ( 339 sec) [ -16948.8768] [ 2966] [depth= 2] . ( 341 sec) [ -16914.4838] [ 2943] [depth= 11] . ( 344 sec) [ -16898.8276] [ 2943] [depth= 4] . ( 348 sec) [ -16735.2363] [ 2934] [depth= 14] . ( 350 sec) [ -16733.7323] [ 2933] [depth= 1] . ( 351 sec) [ -16733.3226] [ 2932] [depth= 3] . ( 353 sec) [ -16647.6158] [ 2922] [depth= 2] . ( 354 sec) [ -16645.0320] [ 2923] [depth= 1] . ( 355 sec) [ -16634.2175] [ 2920] [depth= 7] . ( 357 sec) [ -16597.4693] [ 2897] [depth= 7] . ( 359 sec) [ -16578.4467] [ 2897] [depth= 2] . ( 361 sec) [ -16315.3056] [ 2838] [depth= 13] . ( 362 sec) [ -16313.2265] [ 2838] [depth= 2] . ( 364 sec) [ -16260.9870] [ 2829] [depth= 19] . ( 366 sec) [ -16252.9520] [ 2827] [depth= 2] . ( 374 sec) [ -16252.6936] [ 2828] [depth= 1] . ( 375 sec) [ -16234.6297] [ 2826] [depth= 10] . ( 376 sec) [ -16233.8465] [ 2827] [depth= 1] . ( 378 sec) [ -16233.0730] [ 2828] [depth= 1] . ( 379 sec) [ -16218.9736] [ 2826] [depth= 2] . ( 381 sec) [ -16216.6966] [ 2826] [depth= 5] . ( 384 sec) [ -16181.5384] [ 2820] [depth= 5] . ( 386 sec) [ -16176.7223] [ 2818] [depth= 14] . ( 387 sec) [ -16155.1008] [ 2813] [depth= 2] . ( 389 sec) [ -16147.3760] [ 2814] [depth= 2] . ( 390 sec) [ -16130.9678] [ 2813] [depth= 4] . ( 393 sec) [ -16117.6353] [ 2816] [depth= 3] . ( 395 sec) [ -16093.4986] [ 2808] [depth= 4] . ( 396 sec) [ -16039.8603] [ 2795] [depth= 5] . ( 397 sec) [ -16037.2279] [ 2795] [depth= 1] . ( 399 sec) [ -16005.6941] [ 2787] [depth= 20] . ( 401 sec) [ -15969.1692] [ 2781] [depth= 3] . ( 402 sec) [ -15967.7495] [ 2782] [depth= 1] . ( 403 sec) [ -15959.2880] [ 2782] [depth= 1] . ( 405 sec) [ -15958.1446] [ 2781] [depth= 15] . ( 406 sec) [ -15932.1479] [ 2773] [depth= 3] . ( 408 sec) [ -15826.2192] [ 2745] [depth= 3] . ( 410 sec) [ -15617.1666] [ 2686] [depth= 25] . ( 412 sec) [ -15606.4008] [ 2684] [depth= 2] . ( 413 sec) [ -15570.1396] [ 2677] [depth= 1] . ( 415 sec) [ -15514.7800] [ 2660] [depth= 18] . ( 416 sec) [ -15492.0350] [ 2648] [depth= 18] . ( 418 sec) [ -15453.4427] [ 2642] [depth= 17] . ( 419 sec) [ -15441.9200] [ 2640] [depth= 2] . ( 421 sec) [ -15429.6878] [ 2634] [depth= 3] . ( 422 sec) [ -15404.9154] [ 2632] [depth= 2] . ( 423 sec) [ -15385.0733] [ 2635] [depth= 2] . ( 424 sec) [ -15336.6375] [ 2626] [depth= 30] . ( 426 sec) [ -15300.2247] [ 2618] [depth= 11] . ( 427 sec) [ -15297.1426] [ 2618] [depth= 2] . ( 429 sec) [ -15267.1579] [ 2602] [depth= 10] . ( 430 sec) [ -15130.2025] [ 2602] [depth= 1] . ( 431 sec) [ -15115.7493] [ 2606] [depth= 1] . ( 433 sec) [ -15115.1947] [ 2606] [depth= 1] . ( 434 sec) [ -15101.6097] [ 2606] [depth= 2] . ( 436 sec) [ -15093.0132] [ 2602] [depth= 2] . ( 437 sec) [ -15090.6669] [ 2603] [depth= 1] . ( 439 sec) [ -14893.4490] [ 2588] [depth= 23] . ( 440 sec) [ -14888.8602] [ 2586] [depth= 4] . ( 441 sec) [ -14821.7173] [ 2556] [depth= 1] . ( 442 sec) [ -14789.8467] [ 2544] [depth= 7] . ( 444 sec) [ -14777.1294] [ 2542] [depth= 2] . ( 446 sec) [ -14752.3982] [ 2540] [depth= 6] . ( 447 sec) [ -14745.4939] [ 2539] [depth= 1] . ( 448 sec) [ -14733.3714] [ 2539] [depth= 2] . ( 450 sec) [ -14716.7197] [ 2526] [depth= 4] . ( 452 sec) [ -14637.0829] [ 2508] [depth= 22] . ( 453 sec) [ -14615.2682] [ 2509] [depth= 1] . ( 455 sec) [ -14609.8114] [ 2508] [depth= 1] . ( 456 sec) [ -14609.0811] [ 2509] [depth= 1] . ( 458 sec) [ -14606.7472] [ 2508] [depth= 1] . ( 459 sec) [ -14575.1769] [ 2500] [depth= 3] . ( 461 sec) [ -14561.9314] [ 2496] [depth= 3] . ( 463 sec) [ -14534.3838] [ 2486] [depth= 13] . ( 464 sec) [ -14533.0289] [ 2485] [depth= 1] . ( 465 sec) [ -14530.9317] [ 2480] [depth= 16] . ( 468 sec) [ -14526.3743] [ 2478] [depth= 3] . ( 470 sec) [ -14451.3512] [ 2466] [depth= 1] . ( 471 sec) [ -14410.8942] [ 2461] [depth= 3] . ( 472 sec) [ -14296.0458] [ 2433] [depth= 22] . ( 476 sec) [ -14295.8362] [ 2433] [depth= 11] . ( 478 sec) [ -14294.9111] [ 2433] [depth= 1] . ( 479 sec) [ -14283.4621] [ 2432] [depth= 1] . ( 480 sec) [ -14277.0774] [ 2433] [depth= 1] . ( 483 sec) [ -14276.2354] [ 2433] [depth= 1] . ( 484 sec) [ -14238.1956] [ 2429] [depth= 24] . ( 486 sec) [ -14231.2770] [ 2427] [depth= 2] . ( 487 sec) [ -14221.0333] [ 2424] [depth= 2] . ( 489 sec) [ -14219.0497] [ 2424] [depth= 1] . ( 490 sec) [ -14216.3859] [ 2424] [depth= 1] . ( 492 sec) [ -14203.3200] [ 2421] [depth= 6] . ( 497 sec) [ -14198.1013] [ 2421] [depth= 1] . ( 498 sec) [ -14191.9461] [ 2422] [depth= 3] . ( 500 sec) [ -14163.6005] [ 2414] [depth= 7] . ( 501 sec) [ -14161.1336] [ 2414] [depth= 2] . ( 503 sec) [ -14154.7384] [ 2410] [depth= 11] . ( 504 sec) [ -14153.4438] [ 2411] [depth= 1] . ( 506 sec) [ -14147.3100] [ 2411] [depth= 2] . ( 507 sec) [ -14143.2206] [ 2411] [depth= 1] . ( 515 sec) [ -14136.3736] [ 2410] [depth= 11] . ( 516 sec) [ -14131.5471] [ 2409] [depth= 1] . ( 517 sec) [ -14062.4754] [ 2422] [depth= 3] . ( 519 sec) [ -14060.2342] [ 2422] [depth= 3] . ( 524 sec) [ -13808.9556] [Branch lengths ] . ( 527 sec) [ -13795.2187] [Alpha ][ 0.679213] . ( 532 sec) [ -13784.6005] [ 2418] [depth= 1] . ( 533 sec) [ -13773.5315] [ 2409] [depth= 1] . ( 537 sec) [ -13772.7063] [ 2414] [depth= 18] . ( 538 sec) [ -13772.3547] [ 2414] [depth= 1] . ( 539 sec) [ -13770.9063] [ 2414] [depth= 6] . ( 541 sec) [ -13769.3267] [ 2413] [depth= 1] . ( 543 sec) [ -13762.7420] [ 2413] [depth= 2] . ( 544 sec) [ -13760.6267] [ 2413] [depth= 4] . ( 546 sec) [ -13753.5551] [ 2415] [depth= 2] . ( 581 sec) [ -13751.5486] [ 2415] [depth= 1] . ( 582 sec) [ -13750.8968] [ 2414] [depth= 1] . ( 586 sec) [ -13744.8551] [ 2411] [depth= 1] . ( 587 sec) [ -13728.6966] [ 2401] [depth= 3] . ( 588 sec) [ -13727.4685] [ 2399] [depth= 2] . ( 590 sec) [ -13718.2081] [ 2395] [depth= 1] . ( 593 sec) [ -13714.0791] [ 2394] [depth= 1] . ( 595 sec) [ -13713.7616] [ 2394] [depth= 1] . ( 599 sec) [ -13703.6228] [ 2391] [depth= 1] . ( 602 sec) [ -13703.4536] [ 2391] [depth= 2] . ( 604 sec) [ -13703.3543] [ 2391] [depth= 6] . ( 606 sec) [ -13701.4149] [ 2391] [depth= 2] . ( 607 sec) [ -13679.8758] [ 2385] [depth= 16] . ( 615 sec) [ -13598.7248] [ 2368] [depth= 2] . ( 616 sec) [ -13593.3465] [ 2367] [depth= 5] . ( 617 sec) [ -13585.2288] [ 2366] [depth= 2] . ( 619 sec) [ -13582.3537] [ 2365] [depth= 2] . ( 621 sec) [ -13582.2574] [ 2366] [depth= 1] . ( 623 sec) [ -13575.6646] [ 2359] [depth= 1] . ( 624 sec) [ -13575.2913] [ 2359] [depth= 1] . ( 626 sec) [ -13554.9086] [ 2368] [depth= 1] . ( 632 sec) [ -13551.7736] [ 2363] [depth= 2] . ( 635 sec) [ -13546.4234] [ 2360] [depth= 2] . ( 640 sec) [ -13542.1455] [ 2359] [depth= 2] . ( 641 sec) [ -13542.0656] [ 2357] [depth= 1] . ( 643 sec) [ -13539.7028] [ 2356] [depth= 2] . ( 646 sec) [ -13535.9372] [ 2349] [depth= 4] . ( 651 sec) [ -13535.5951] [ 2351] [depth= 1] . ( 652 sec) [ -13535.5674] [ 2351] [depth= 1] . ( 653 sec) [ -13535.5309] [ 2351] [depth= 1] . ( 656 sec) [ -13535.2233] [ 2351] [depth= 1] . ( 658 sec) [ -13519.6134] [ 2346] [depth= 1] . ( 660 sec) [ -13514.1456] [ 2345] [depth= 2] . ( 661 sec) [ -13483.7561] [ 2330] [depth= 7] . ( 663 sec) [ -13455.2548] [ 2310] [depth= 15] . ( 664 sec) [ -13453.8230] [ 2309] [depth= 1] . ( 665 sec) [ -13453.0592] [ 2308] [depth= 1] . ( 668 sec) [ -13444.0990] [ 2307] [depth= 2] . ( 669 sec) [ -13439.4324] [ 2307] [depth= 2] . ( 671 sec) [ -13431.2422] [ 2305] [depth= 15] . ( 672 sec) [ -13429.1194] [ 2304] [depth= 1] . ( 678 sec) [ -13429.1076] [ 2304] [depth= 1] . ( 681 sec) [ -13428.8006] [ 2306] [depth= 1] . ( 683 sec) [ -13425.1526] [ 2306] [depth= 1] . ( 684 sec) [ -13422.7756] [ 2304] [depth= 2] . ( 686 sec) [ -13416.7720] [ 2305] [depth= 1] . ( 693 sec) [ -13406.9868] [ 2303] [depth= 2] . ( 696 sec) [ -13406.4690] [ 2303] [depth= 3] . ( 697 sec) [ -13405.9456] [ 2303] [depth= 1] . ( 699 sec) [ -13405.8390] [ 2304] [depth= 1] . ( 701 sec) [ -13405.4454] [ 2304] [depth= 3] . ( 702 sec) [ -13404.2466] [ 2304] [depth= 2] . ( 704 sec) [ -13358.3813] [ 2294] [depth= 5] . ( 720 sec) [ -13347.0573] [ 2290] [depth= 1] . ( 721 sec) [ -13346.7959] [ 2290] [depth= 2] . ( 723 sec) [ -13343.5201] [ 2289] [depth= 1] . ( 724 sec) [ -13340.1071] [ 2291] [depth= 2] . ( 726 sec) [ -13339.3220] [ 2293] [depth= 1] . ( 732 sec) [ -13337.7743] [ 2293] [depth= 2] . ( 734 sec) [ -13335.8764] [ 2294] [depth= 1] . ( 736 sec) [ -13335.3695] [ 2295] [depth= 1] . ( 739 sec) [ -13328.8689] [ 2296] [depth= 2] . ( 741 sec) [ -13328.6281] [ 2296] [depth= 2] . ( 744 sec) [ -13324.0858] [ 2279] [depth= 16] . ( 772 sec) [ -13324.0282] [ 2279] [depth= 2] . ( 774 sec) [ -13322.1714] [ 2279] [depth= 2] . ( 775 sec) [ -13319.7508] [ 2276] [depth= 1] . ( 776 sec) [ -13319.0269] [ 2274] [depth= 2] . ( 779 sec) [ -13318.3936] [ 2274] [depth= 2] . ( 780 sec) [ -13317.2091] [ 2273] [depth= 1] . ( 782 sec) [ -13316.8423] [ 2271] [depth= 2] . ( 783 sec) [ -13316.8063] [ 2271] [depth= 1] . ( 785 sec) [ -13315.7722] [ 2271] [depth= 1] . ( 795 sec) [ -13312.3973] [ 2270] [depth= 1] . ( 799 sec) [ -13143.2206] [ 2218] [depth= 12] . ( 800 sec) [ -13134.1053] [ 2218] [depth= 1] . ( 802 sec) [ -13123.7402] [ 2217] [depth= 3] . ( 809 sec) [ -13123.3254] [ 2217] [depth= 1] . ( 815 sec) [ -13120.4390] [ 2217] [depth= 3] . ( 817 sec) [ -13119.5178] [ 2217] [depth= 2] . ( 818 sec) [ -13119.4560] [ 2216] [depth= 1] . ( 828 sec) [ -13118.4108] [ 2218] [depth= 1] . ( 830 sec) [ -13118.3306] [ 2218] [depth= 1] . ( 834 sec) [ -13117.6587] [ 2218] [depth= 2] . ( 836 sec) [ -13111.4942] [ 2216] [depth= 6] . ( 837 sec) [ -13093.5601] [ 2210] [depth= 8] . ( 851 sec) [ -13093.2949] [ 2213] [depth= 2] . ( 853 sec) [ -13092.7531] [ 2213] [depth= 3] . ( 854 sec) [ -13092.7407] [ 2213] [depth= 1] . ( 856 sec) [ -13092.3742] [ 2213] [depth= 1] . ( 860 sec) [ -13089.1773] [ 2213] [depth= 1] . ( 862 sec) [ -13088.7562] [ 2213] [depth= 1] . ( 870 sec) [ -13084.4650] [ 2210] [depth= 2] . ( 874 sec) [ -13080.6470] [ 2210] [depth= 1] . ( 885 sec) [ -13022.7823] [ 2190] [depth= 29] . ( 886 sec) [ -13016.5893] [ 2184] [depth= 2] . ( 889 sec) [ -13016.3269] [ 2184] [depth= 1] . ( 894 sec) [ -13013.6377] [ 2182] [depth= 3] . ( 895 sec) [ -13012.9551] [ 2182] [depth= 1] . ( 899 sec) [ -13012.1257] [ 2182] [depth= 1] . ( 902 sec) [ -13011.2374] [ 2186] [depth= 1] . ( 904 sec) [ -13005.0690] [ 2186] [depth= 1] . ( 912 sec) [ -13005.0561] [ 2186] [depth= 1] . ( 926 sec) [ -13004.7479] [ 2186] [depth= 1] . ( 927 sec) [ -13004.3606] [ 2188] [depth= 9] . ( 941 sec) [ -13003.7498] [ 2188] [depth= 1] . ( 946 sec) [ -13003.5247] [ 2188] [depth= 3] . ( 947 sec) [ -13002.6815] [ 2188] [depth= 1] . ( 951 sec) [ -13001.0826] [ 2186] [depth= 2] . ( 952 sec) [ -13000.8106] [ 2186] [depth= 1] . ( 954 sec) [ -13000.0932] [ 2186] [depth= 1] . ( 959 sec) [ -12998.3605] [ 2185] [depth= 1] . ( 961 sec) [ -12994.8551] [ 2185] [depth= 2] . ( 963 sec) [ -12992.2501] [ 2185] [depth= 1] . ( 965 sec) [ -12992.2096] [ 2186] [depth= 1] . ( 968 sec) [ -12991.9322] [ 2182] [depth= 1] . ( 980 sec) [ -12991.4867] [ 2182] [depth= 10] . ( 982 sec) [ -12990.8275] [ 2181] [depth= 1] . ( 983 sec) [ -12990.4575] [ 2181] [depth= 1] . ( 986 sec) [ -12989.6062] [ 2181] [depth= 2] . ( 990 sec) [ -12989.5830] [ 2181] [depth= 1] . ( 1005 sec) [ -12988.4278] [ 2181] [depth= 1] . ( 1006 sec) [ -12980.5259] [ 2182] [depth= 1] . ( 1009 sec) [ -12980.4050] [ 2182] [depth= 1] . ( 1010 sec) [ -12980.0622] [ 2182] [depth= 1] . ( 1011 sec) [ -12974.6139] [ 2186] [depth= 2] . ( 1020 sec) [ -12974.2357] [ 2185] [depth= 1] . ( 1024 sec) [ -12973.9547] [ 2185] [depth= 1] . ( 1025 sec) [ -12973.4992] [ 2185] [depth= 1] . ( 1028 sec) [ -12963.3394] [ 2181] [depth= 1] . ( 1047 sec) [ -12956.6218] [ 2181] [depth= 2] . ( 1049 sec) [ -12955.2622] [ 2181] [depth= 1] . ( 1054 sec) [ -12954.9863] [ 2181] [depth= 1] . ( 1059 sec) [ -12954.5062] [ 2181] [depth= 2] . ( 1066 sec) [ -12954.4900] [ 2181] [depth= 1] . ( 1068 sec) [ -12954.4498] [ 2181] [depth= 2] . ( 1070 sec) [ -12952.9211] [ 2180] [depth= 2] . ( 1076 sec) [ -12952.7418] [ 2180] [depth= 1] . ( 1077 sec) [ -12952.1227] [ 2181] [depth= 1] . ( 1083 sec) [ -12951.6860] [ 2180] [depth= 1] . ( 1084 sec) [ -12950.3805] [ 2180] [depth= 1] . ( 1088 sec) [ -12950.2625] [ 2181] [depth= 1] . ( 1102 sec) [ -12950.1808] [ 2181] [depth= 5] . ( 1107 sec) [ -12901.6030] [Branch lengths ] . ( 1109 sec) [ -12901.0860] [Alpha ][ 0.723115] . ( 1132 sec) [ -12898.5454] [ 2175] [depth= 1] . ( 1172 sec) [ -12898.4923] [ 2175] [depth= 1] . ( 1193 sec) [ -12898.4602] [ 2175] [depth= 1] . ( 1195 sec) [ -12897.2168] [ 2173] [depth= 5] . ( 1208 sec) [ -12897.1303] [ 2173] [depth= 1] . ( 1217 sec) [ -12896.9655] [ 2173] [depth= 1] . ( 1226 sec) [ -12896.9161] [ 2173] [depth= 1] . ( 1277 sec) [ -12878.6483] [ 2171] [depth= 8] . ( 1356 sec) [ -12876.3603] [ 2170] [depth= 1] . ( 1383 sec) [ -12876.3065] [ 2170] [depth= 1] . ( 1417 sec) [ -12876.2817] [ 2170] [depth= 1] . ( 1423 sec) [ -12875.4335] [ 2169] [depth= 1] . ( 1427 sec) [ -12875.4078] [ 2169] [depth= 1] . ( 1438 sec) [ -12875.3109] [ 2169] [depth= 1] . ( 1439 sec) [ -12874.8852] [ 2169] [depth= 1] . ( 1476 sec) [ -12874.7892] [ 2169] [depth= 5] . ( 1512 sec) [ -12872.4518] [ 2169] [depth= 4] . ( 1554 sec) [ -12872.2027] [ 2169] [depth= 1] . ( 1559 sec) [ -12872.0850] [ 2170] [depth= 2] . ( 1560 sec) [ -12871.0078] [ 2169] [depth= 1] . ( 1584 sec) [ -12870.9692] [ 2169] [depth= 1] . ( 1585 sec) [ -12870.8536] [ 2173] [depth= 5] . ( 1599 sec) [ -12870.7288] [ 2173] [depth= 1] . ( 1659 sec) [ -12870.6789] [ 2173] [depth= 1] . ( 1698 sec) [ -12868.6745] [ 2173] [depth= 2] . ( 1700 sec) [ -12868.6410] [ 2173] [depth= 3] . ( 1704 sec) [ -12867.9927] [ 2173] [depth= 1] . ( 1711 sec) [ -12867.9797] [ 2173] [depth= 1] . ( 1723 sec) [ -12867.9371] [ 2173] [depth= 1] . ( 1727 sec) [ -12867.2598] [ 2172] [depth= 1] . ( 1733 sec) [ -12867.2497] [ 2172] [depth= 1] . ( 1743 sec) [ -12867.2013] [ 2172] [depth= 2] . ( 1755 sec) [ -12866.0740] [ 2172] [depth= 1] . ( 1862 sec) [ -12866.0531] [ 2172] [depth= 1] . ( 1867 sec) [ -12854.1666] [Branch lengths ] . ( 1870 sec) [ -12854.1613] [Alpha ][ 0.727816] . ( 2088 sec) [ -12854.0771] [ 2172] [depth= 3] . ( 2222 sec) [ -12854.0109] [ 2172] [depth= 1] . ( 2303 sec) [ -12853.9435] [ 2172] [depth= 1] . ( 2606 sec) [ -12853.6739] [ 2172] [depth= 1] . ( 2676 sec) [ -12853.6348] [ 2172] [depth= 1] . ( 2801 sec) [ -12845.3487] [Branch lengths ] . ( 2803 sec) [ -12845.3464] [Alpha ][ 0.730842] . ( 3159 sec) [ -12845.2702] [ 2172] [depth= 1] . ( 3778 sec) [ -12842.5483] [Branch lengths ] . ( 3780 sec) [ -12842.5480] [Alpha ][ 0.731807] . ( 4483 sec) [ -12842.5259] [ 2172] [depth= 1] . ( 4755 sec) [ -12842.3850] [Branch lengths ] . ( 4757 sec) [ -12842.3850] [Alpha ][ 0.731807] . ( 4758 sec) [ -12842.3850] [Topology ] . ( 4770 sec) [ -12842.3641] [Topology ] . ( 4783 sec) [ -12842.3373] [Topology ] . ( 4796 sec) [ -12842.2071] [Topology ] . ( 4808 sec) [ -12841.7690] [Topology ] . ( 4821 sec) [ -12841.6500] [Topology ] . ( 4834 sec) [ -12841.6212] [Topology ] . ( 4836 sec) [ -12841.6211] [Alpha ][ 0.732541] . ( 4837 sec) [ -12841.6211] [Topology ] . ( 4849 sec) [ -12841.6129] [Topology ] . ( 4862 sec) [ -12841.6102] [Topology ] . ( 4875 sec) [ -12841.6090] [Topology ] . ( 4887 sec) [ -12841.6083] [Topology ] . ( 4889 sec) [ -12841.6083] [Alpha ][ 0.732541] . ( 4890 sec) [ -12841.6083] [Topology ] . ( 4903 sec) [ -12841.6078] [Topology ] . ( 4905 sec) [ -12841.6078] [Alpha ][ 0.732541] . Checking for NNIs, optimizing five branches... . ( 4999 sec) [ -12841.5998] [Topology ] . Checking for NNIs, optimizing five branches... . ( 5093 sec) [ -12841.5994] [Topology ] . Checking for NNIs, optimizing five branches... . ( 5186 sec) [ -12841.5992] [Topology ] . Checking for NNIs, optimizing five branches... . ( 5279 sec) [ -12841.5991] [Topology ] . Checking for NNIs, optimizing five branches... . ( 5374 sec) [ -12841.5903] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -12841.590328. . [Random start 2/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 4 sec) [ -31655.1951] [Alpha ][ 0.500960] . ( 7 sec) [ -31432.0639] [ 4971] [depth= 14] . ( 8 sec) [ -31286.2026] [ 4958] [depth= 17] . ( 10 sec) [ -31122.5681] [ 4925] [depth= 13] . ( 11 sec) [ -30912.2556] [ 4870] [depth= 1] . ( 12 sec) [ -30835.7496] [ 4843] [depth= 6] . ( 13 sec) [ -30827.0376] [ 4844] [depth= 1] . ( 15 sec) [ -30713.3277] [ 4829] [depth= 11] . ( 16 sec) [ -30588.4719] [ 4824] [depth= 2] . ( 17 sec) [ -30212.4597] [ 4808] [depth= 6] . ( 19 sec) [ -30204.5340] [ 4810] [depth= 3] . ( 20 sec) [ -30115.9195] [ 4803] [depth= 3] . ( 21 sec) [ -30091.9801] [ 4795] [depth= 4] . ( 23 sec) [ -30000.5471] [ 4790] [depth= 13] . ( 24 sec) [ -29983.4683] [ 4788] [depth= 2] . ( 25 sec) [ -29901.9849] [ 4784] [depth= 8] . ( 26 sec) [ -29896.8305] [ 4774] [depth= 4] . ( 28 sec) [ -29859.4770] [ 4770] [depth= 10] . ( 29 sec) [ -29846.1951] [ 4768] [depth= 13] . ( 30 sec) [ -29843.6876] [ 4766] [depth= 9] . ( 32 sec) [ -29663.1598] [ 4733] [depth= 6] . ( 33 sec) [ -29636.8016] [ 4732] [depth= 1] . ( 34 sec) [ -29410.8837] [ 4678] [depth= 4] . ( 36 sec) [ -29197.2594] [ 4641] [depth= 9] . ( 37 sec) [ -29003.8043] [ 4607] [depth= 28] . ( 39 sec) [ -28909.3090] [ 4595] [depth= 1] . ( 40 sec) [ -28815.2961] [ 4579] [depth= 15] . ( 42 sec) [ -28808.0619] [ 4576] [depth= 9] . ( 44 sec) [ -28759.1285] [ 4573] [depth= 4] . ( 45 sec) [ -28475.4292] [ 4508] [depth= 19] . ( 47 sec) [ -28399.1546] [ 4495] [depth= 4] . ( 48 sec) [ -28219.2512] [ 4457] [depth= 8] . ( 49 sec) [ -28199.9531] [ 4464] [depth= 1] . ( 51 sec) [ -28069.2678] [ 4456] [depth= 15] . ( 52 sec) [ -28062.5299] [ 4454] [depth= 2] . ( 53 sec) [ -27961.1553] [ 4424] [depth= 1] . ( 54 sec) [ -27858.5331] [ 4422] [depth= 3] . ( 56 sec) [ -27636.5836] [ 4413] [depth= 13] . ( 57 sec) [ -27624.2186] [ 4413] [depth= 1] . ( 58 sec) [ -27600.9945] [ 4411] [depth= 1] . ( 60 sec) [ -27567.0060] [ 4403] [depth= 10] . ( 61 sec) [ -27538.7333] [ 4399] [depth= 1] . ( 63 sec) [ -27428.7707] [ 4393] [depth= 12] . ( 64 sec) [ -27370.0184] [ 4391] [depth= 22] . ( 66 sec) [ -27288.0965] [ 4366] [depth= 15] . ( 67 sec) [ -27266.4488] [ 4352] [depth= 12] . ( 69 sec) [ -26297.7554] [ 4346] [depth= 9] . ( 70 sec) [ -25962.7884] [ 4272] [depth= 12] . ( 72 sec) [ -25852.8931] [ 4259] [depth= 9] . ( 73 sec) [ -25847.7349] [ 4256] [depth= 1] . ( 74 sec) [ -25778.8462] [ 4239] [depth= 16] . ( 76 sec) [ -25764.1480] [ 4239] [depth= 2] . ( 78 sec) [ -25531.6466] [ 4230] [depth= 18] . ( 79 sec) [ -25519.4278] [ 4228] [depth= 14] . ( 81 sec) [ -25413.3670] [ 4196] [depth= 12] . ( 82 sec) [ -25157.4821] [ 4185] [depth= 11] . ( 83 sec) [ -24817.4280] [ 4194] [depth= 1] . ( 85 sec) [ -24671.2383] [ 4178] [depth= 9] . ( 86 sec) [ -24641.8440] [ 4173] [depth= 1] . ( 88 sec) [ -24374.0246] [ 4139] [depth= 10] . ( 89 sec) [ -24317.6484] [ 4139] [depth= 1] . ( 90 sec) [ -24234.8785] [ 4109] [depth= 1] . ( 92 sec) [ -24154.0644] [ 4097] [depth= 3] . ( 93 sec) [ -24143.1793] [ 4097] [depth= 2] . ( 95 sec) [ -24132.9157] [ 4095] [depth= 1] . ( 96 sec) [ -23816.5300] [ 3985] [depth= 8] . ( 97 sec) [ -23800.4411] [ 3978] [depth= 1] . ( 99 sec) [ -23709.8003] [ 3955] [depth= 11] . ( 100 sec) [ -23676.7047] [ 3951] [depth= 1] . ( 101 sec) [ -23584.1602] [ 3948] [depth= 18] . ( 103 sec) [ -23524.0049] [ 3933] [depth= 7] . ( 104 sec) [ -23499.8513] [ 3932] [depth= 2] . ( 105 sec) [ -23457.2225] [ 3928] [depth= 4] . ( 106 sec) [ -23409.2883] [ 3920] [depth= 9] . ( 107 sec) [ -23394.2754] [ 3916] [depth= 1] . ( 109 sec) [ -23343.2113] [ 3911] [depth= 12] . ( 111 sec) [ -23335.0851] [ 3908] [depth= 6] . ( 112 sec) [ -23274.5576] [ 3908] [depth= 2] . ( 113 sec) [ -23216.6223] [ 3892] [depth= 15] . ( 115 sec) [ -23214.5978] [ 3889] [depth= 13] . ( 116 sec) [ -23174.8971] [ 3884] [depth= 5] . ( 117 sec) [ -23145.7760] [ 3878] [depth= 18] . ( 119 sec) [ -23108.4813] [ 3870] [depth= 12] . ( 120 sec) [ -23065.5028] [ 3861] [depth= 17] . ( 122 sec) [ -22950.5116] [ 3832] [depth= 12] . ( 123 sec) [ -22918.7197] [ 3831] [depth= 3] . ( 125 sec) [ -22883.2821] [ 3826] [depth= 9] . ( 126 sec) [ -22869.8326] [ 3833] [depth= 1] . ( 127 sec) [ -22789.5196] [ 3832] [depth= 4] . ( 129 sec) [ -22784.8365] [ 3825] [depth= 1] . ( 130 sec) [ -22770.1128] [ 3826] [depth= 1] . ( 131 sec) [ -22699.6513] [ 3828] [depth= 17] . ( 133 sec) [ -22698.0014] [ 3829] [depth= 1] . ( 134 sec) [ -22546.6723] [ 3811] [depth= 9] . ( 136 sec) [ -22439.3261] [ 3802] [depth= 8] . ( 137 sec) [ -22420.7500] [ 3800] [depth= 17] . ( 139 sec) [ -22408.2793] [ 3797] [depth= 6] . ( 140 sec) [ -22405.4727] [ 3797] [depth= 1] . ( 141 sec) [ -22376.5192] [ 3791] [depth= 10] . ( 143 sec) [ -22374.7463] [ 3787] [depth= 7] . ( 144 sec) [ -22348.7240] [ 3780] [depth= 13] . ( 146 sec) [ -22255.7076] [ 3758] [depth= 24] . ( 147 sec) [ -22221.4933] [ 3756] [depth= 1] . ( 149 sec) [ -22181.7547] [ 3744] [depth= 25] . ( 150 sec) [ -22161.8729] [ 3736] [depth= 15] . ( 152 sec) [ -22140.5566] [ 3733] [depth= 3] . ( 154 sec) [ -22116.1777] [ 3729] [depth= 1] . ( 156 sec) [ -21989.7704] [ 3708] [depth= 8] . ( 157 sec) [ -21989.2812] [ 3709] [depth= 1] . ( 159 sec) [ -21946.0312] [ 3700] [depth= 7] . ( 160 sec) [ -21935.3084] [ 3695] [depth= 2] . ( 162 sec) [ -21889.6612] [ 3688] [depth= 20] . ( 163 sec) [ -21857.7513] [ 3686] [depth= 2] . ( 164 sec) [ -21844.3740] [ 3686] [depth= 1] . ( 166 sec) [ -21828.1048] [ 3685] [depth= 1] . ( 167 sec) [ -21802.7295] [ 3684] [depth= 2] . ( 168 sec) [ -21784.2460] [ 3680] [depth= 15] . ( 169 sec) [ -21781.1745] [ 3679] [depth= 1] . ( 170 sec) [ -21635.7098] [ 3646] [depth= 12] . ( 172 sec) [ -21532.5233] [ 3626] [depth= 14] . ( 173 sec) [ -21526.7836] [ 3623] [depth= 5] . ( 175 sec) [ -21526.0093] [ 3623] [depth= 1] . ( 176 sec) [ -21518.4332] [ 3622] [depth= 12] . ( 178 sec) [ -21469.8555] [ 3612] [depth= 26] . ( 178 sec) [ -21467.8257] [ 3612] [depth= 1] . ( 180 sec) [ -21412.0870] [ 3607] [depth= 16] . ( 181 sec) [ -21402.0861] [ 3600] [depth= 1] . ( 184 sec) [ -21361.7802] [ 3590] [depth= 17] . ( 185 sec) [ -21322.3705] [ 3588] [depth= 13] . ( 187 sec) [ -21226.3889] [ 3572] [depth= 16] . ( 189 sec) [ -21190.0472] [ 3564] [depth= 13] . ( 191 sec) [ -20791.3093] [ 3565] [depth= 1] . ( 192 sec) [ -20725.3541] [ 3564] [depth= 6] . ( 193 sec) [ -20670.9623] [ 3563] [depth= 1] . ( 194 sec) [ -20644.1462] [ 3566] [depth= 3] . ( 196 sec) [ -20409.0499] [ 3560] [depth= 8] . ( 197 sec) [ -20408.7820] [ 3550] [depth= 3] . ( 199 sec) [ -20359.0372] [ 3547] [depth= 12] . ( 201 sec) [ -20032.9768] [ 3495] [depth= 2] . ( 202 sec) [ -19995.7296] [ 3482] [depth= 1] . ( 204 sec) [ -19969.5486] [ 3475] [depth= 7] . ( 205 sec) [ -19863.9396] [ 3448] [depth= 27] . ( 206 sec) [ -19854.4493] [ 3448] [depth= 1] . ( 208 sec) [ -19854.0439] [ 3448] [depth= 1] . ( 209 sec) [ -19846.8261] [ 3447] [depth= 4] . ( 211 sec) [ -19808.5958] [ 3438] [depth= 2] . ( 212 sec) [ -19805.6399] [ 3438] [depth= 2] . ( 213 sec) [ -19639.2202] [ 3430] [depth= 21] . ( 215 sec) [ -19637.9294] [ 3430] [depth= 18] . ( 217 sec) [ -19621.3498] [ 3429] [depth= 11] . ( 218 sec) [ -19612.4629] [ 3427] [depth= 1] . ( 220 sec) [ -19579.5497] [ 3420] [depth= 19] . ( 221 sec) [ -19577.3976] [ 3420] [depth= 1] . ( 223 sec) [ -19478.1420] [ 3401] [depth= 9] . ( 225 sec) [ -19474.9029] [ 3402] [depth= 1] . ( 226 sec) [ -19425.6920] [ 3386] [depth= 21] . ( 228 sec) [ -19403.3365] [ 3382] [depth= 9] . ( 229 sec) [ -19385.4202] [ 3381] [depth= 6] . ( 231 sec) [ -19373.2234] [ 3376] [depth= 9] . ( 232 sec) [ -19372.5749] [ 3376] [depth= 1] . ( 233 sec) [ -19320.4190] [ 3369] [depth= 16] . ( 235 sec) [ -19268.3335] [ 3372] [depth= 2] . ( 236 sec) [ -18974.8310] [ 3303] [depth= 3] . ( 238 sec) [ -18934.7592] [ 3298] [depth= 21] . ( 240 sec) [ -18930.3815] [ 3298] [depth= 1] . ( 241 sec) [ -18930.1071] [ 3297] [depth= 1] . ( 242 sec) [ -18856.0418] [ 3278] [depth= 22] . ( 244 sec) [ -18825.9858] [ 3277] [depth= 3] . ( 245 sec) [ -18816.9742] [ 3274] [depth= 1] . ( 247 sec) [ -18779.8611] [ 3275] [depth= 4] . ( 248 sec) [ -18595.7290] [ 3265] [depth= 8] . ( 250 sec) [ -18575.9229] [ 3265] [depth= 1] . ( 251 sec) [ -18509.4839] [ 3223] [depth= 8] . ( 253 sec) [ -18447.7395] [ 3211] [depth= 5] . ( 255 sec) [ -18395.9103] [ 3203] [depth= 23] . ( 256 sec) [ -18045.7246] [ 3173] [depth= 12] . ( 257 sec) [ -17964.6891] [ 3151] [depth= 17] . ( 259 sec) [ -17933.6780] [ 3151] [depth= 12] . ( 260 sec) [ -17914.9441] [ 3150] [depth= 1] . ( 262 sec) [ -17912.7881] [ 3147] [depth= 3] . ( 263 sec) [ -17897.5084] [ 3147] [depth= 8] . ( 264 sec) [ -17879.4035] [ 3143] [depth= 10] . ( 265 sec) [ -17828.2896] [ 3120] [depth= 12] . ( 267 sec) [ -17818.1187] [ 3125] [depth= 1] . ( 268 sec) [ -17798.1980] [ 3123] [depth= 1] . ( 271 sec) [ -17716.6301] [ 3126] [depth= 2] . ( 272 sec) [ -17693.4660] [ 3125] [depth= 2] . ( 273 sec) [ -17660.0170] [ 3119] [depth= 14] . ( 274 sec) [ -17658.6981] [ 3119] [depth= 1] . ( 276 sec) [ -17656.8041] [ 3117] [depth= 1] . ( 277 sec) [ -17568.3706] [ 3101] [depth= 16] . ( 279 sec) [ -17529.9122] [ 3098] [depth= 11] . ( 280 sec) [ -17525.5938] [ 3098] [depth= 1] . ( 283 sec) [ -17511.7521] [ 3089] [depth= 13] . ( 284 sec) [ -17453.0241] [ 3074] [depth= 2] . ( 285 sec) [ -17452.7024] [ 3075] [depth= 1] . ( 287 sec) [ -17451.9541] [ 3077] [depth= 2] . ( 289 sec) [ -17397.4547] [ 3060] [depth= 18] . ( 290 sec) [ -17374.9770] [ 3056] [depth= 1] . ( 294 sec) [ -17272.3596] [ 2996] [depth= 9] . ( 296 sec) [ -17265.0841] [ 2995] [depth= 2] . ( 297 sec) [ -17252.5018] [ 2992] [depth= 7] . ( 298 sec) [ -17246.1193] [ 2991] [depth= 1] . ( 299 sec) [ -17244.5258] [ 2992] [depth= 1] . ( 301 sec) [ -17236.8859] [ 2988] [depth= 1] . ( 302 sec) [ -17234.9945] [ 2988] [depth= 2] . ( 303 sec) [ -17229.6564] [ 2987] [depth= 1] . ( 304 sec) [ -17137.0795] [ 2972] [depth= 4] . ( 306 sec) [ -17003.8343] [ 2928] [depth= 22] . ( 307 sec) [ -16990.4592] [ 2925] [depth= 2] . ( 308 sec) [ -16576.3327] [ 2910] [depth= 10] . ( 310 sec) [ -16322.3448] [ 2876] [depth= 2] . ( 311 sec) [ -16309.5106] [ 2875] [depth= 1] . ( 313 sec) [ -16244.0901] [ 2847] [depth= 19] . ( 314 sec) [ -16243.9840] [ 2849] [depth= 2] . ( 317 sec) [ -16241.0050] [ 2849] [depth= 1] . ( 319 sec) [ -16208.1078] [ 2846] [depth= 1] . ( 320 sec) [ -16197.8804] [ 2843] [depth= 1] . ( 322 sec) [ -16191.1832] [ 2842] [depth= 4] . ( 325 sec) [ -16158.8590] [ 2831] [depth= 11] . ( 326 sec) [ -16125.2140] [ 2821] [depth= 19] . ( 328 sec) [ -16114.2943] [ 2820] [depth= 1] . ( 329 sec) [ -16109.7358] [ 2819] [depth= 1] . ( 330 sec) [ -15997.9180] [ 2791] [depth= 10] . ( 332 sec) [ -15988.5324] [ 2788] [depth= 1] . ( 333 sec) [ -15982.1029] [ 2787] [depth= 2] . ( 334 sec) [ -15967.7611] [ 2786] [depth= 1] . ( 335 sec) [ -15891.8412] [ 2774] [depth= 10] . ( 337 sec) [ -15882.3017] [ 2774] [depth= 1] . ( 339 sec) [ -15881.1811] [ 2775] [depth= 1] . ( 341 sec) [ -15880.8220] [ 2775] [depth= 1] . ( 342 sec) [ -15878.0244] [ 2766] [depth= 4] . ( 343 sec) [ -15872.6559] [ 2765] [depth= 1] . ( 345 sec) [ -15840.2997] [ 2758] [depth= 6] . ( 347 sec) [ -15552.2543] [ 2687] [depth= 2] . ( 349 sec) [ -15456.4292] [ 2651] [depth= 13] . ( 351 sec) [ -15443.6241] [ 2652] [depth= 2] . ( 353 sec) [ -15406.1775] [ 2645] [depth= 6] . ( 355 sec) [ -15175.2568] [ 2619] [depth= 14] . ( 357 sec) [ -15118.3001] [ 2609] [depth= 16] . ( 358 sec) [ -15116.0787] [ 2611] [depth= 1] . ( 359 sec) [ -15061.0799] [ 2597] [depth= 17] . ( 361 sec) [ -15049.7246] [ 2597] [depth= 1] . ( 362 sec) [ -15045.4905] [ 2595] [depth= 1] . ( 366 sec) [ -15019.4657] [ 2589] [depth= 7] . ( 367 sec) [ -15005.0584] [ 2589] [depth= 1] . ( 368 sec) [ -15004.3040] [ 2589] [depth= 2] . ( 370 sec) [ -14999.3586] [ 2590] [depth= 1] . ( 371 sec) [ -14972.1032] [ 2586] [depth= 4] . ( 372 sec) [ -14968.5279] [ 2586] [depth= 1] . ( 374 sec) [ -14912.5787] [ 2574] [depth= 3] . ( 375 sec) [ -14910.1471] [ 2569] [depth= 3] . ( 376 sec) [ -14907.0222] [ 2570] [depth= 1] . ( 378 sec) [ -14867.8442] [ 2562] [depth= 11] . ( 379 sec) [ -14856.5943] [ 2561] [depth= 4] . ( 381 sec) [ -14855.9480] [ 2561] [depth= 1] . ( 382 sec) [ -14852.9693] [ 2560] [depth= 1] . ( 384 sec) [ -14795.6388] [ 2555] [depth= 5] . ( 385 sec) [ -14747.9082] [ 2549] [depth= 2] . ( 387 sec) [ -14747.7810] [ 2549] [depth= 12] . ( 388 sec) [ -14743.8365] [ 2549] [depth= 1] . ( 390 sec) [ -14736.1140] [ 2547] [depth= 3] . ( 391 sec) [ -14730.7450] [ 2545] [depth= 1] . ( 392 sec) [ -14729.5217] [ 2545] [depth= 2] . ( 393 sec) [ -14724.0821] [ 2546] [depth= 7] . ( 397 sec) [ -14718.3272] [ 2543] [depth= 10] . ( 398 sec) [ -14704.4329] [ 2538] [depth= 3] . ( 400 sec) [ -14704.3679] [ 2538] [depth= 1] . ( 401 sec) [ -14688.7204] [ 2538] [depth= 2] . ( 403 sec) [ -14688.1976] [ 2536] [depth= 3] . ( 406 sec) [ -14680.9476] [ 2534] [depth= 8] . ( 407 sec) [ -14637.1395] [ 2527] [depth= 4] . ( 408 sec) [ -14552.8336] [ 2525] [depth= 6] . ( 410 sec) [ -14547.6679] [ 2526] [depth= 5] . ( 415 sec) [ -14547.2284] [ 2527] [depth= 1] . ( 416 sec) [ -14512.3668] [ 2525] [depth= 3] . ( 418 sec) [ -14476.0068] [ 2517] [depth= 8] . ( 420 sec) [ -14475.7290] [ 2519] [depth= 11] . ( 422 sec) [ -14471.2981] [ 2516] [depth= 2] . ( 424 sec) [ -14403.6124] [ 2484] [depth= 13] . ( 425 sec) [ -14363.9042] [ 2482] [depth= 1] . ( 426 sec) [ -14361.4460] [ 2483] [depth= 1] . ( 428 sec) [ -14354.1260] [ 2477] [depth= 20] . ( 429 sec) [ -14344.1381] [ 2474] [depth= 2] . ( 430 sec) [ -14327.4851] [ 2475] [depth= 1] . ( 432 sec) [ -14100.9390] [ 2421] [depth= 1] . ( 433 sec) [ -14053.1279] [ 2420] [depth= 1] . ( 434 sec) [ -14046.5387] [ 2416] [depth= 9] . ( 438 sec) [ -14046.0934] [ 2416] [depth= 2] . ( 439 sec) [ -14015.2015] [ 2398] [depth= 2] . ( 440 sec) [ -14004.9584] [ 2398] [depth= 1] . ( 442 sec) [ -13981.1879] [ 2403] [depth= 1] . ( 443 sec) [ -13956.0722] [ 2401] [depth= 3] . ( 445 sec) [ -13952.2695] [ 2402] [depth= 2] . ( 447 sec) [ -13926.9263] [ 2396] [depth= 18] . ( 448 sec) [ -13898.0795] [ 2384] [depth= 1] . ( 449 sec) [ -13893.1300] [ 2383] [depth= 1] . ( 451 sec) [ -13888.0833] [ 2383] [depth= 1] . ( 452 sec) [ -13885.3453] [ 2383] [depth= 1] . ( 455 sec) [ -13878.1352] [ 2381] [depth= 5] . ( 457 sec) [ -13870.6940] [ 2380] [depth= 3] . ( 460 sec) [ -13848.4429] [ 2378] [depth= 2] . ( 461 sec) [ -13844.5841] [ 2378] [depth= 1] . ( 462 sec) [ -13840.5939] [ 2376] [depth= 4] . ( 464 sec) [ -13839.1306] [ 2376] [depth= 1] . ( 465 sec) [ -13830.6346] [ 2375] [depth= 4] . ( 466 sec) [ -13819.0785] [ 2375] [depth= 1] . ( 468 sec) [ -13788.4694] [ 2367] [depth= 8] . ( 470 sec) [ -13787.7914] [ 2367] [depth= 2] . ( 471 sec) [ -13783.4981] [ 2367] [depth= 2] . ( 473 sec) [ -13768.7323] [ 2365] [depth= 22] . ( 474 sec) [ -13728.0717] [ 2353] [depth= 7] . ( 475 sec) [ -13712.3722] [ 2350] [depth= 2] . ( 477 sec) [ -13711.7257] [ 2349] [depth= 2] . ( 478 sec) [ -13707.9718] [ 2348] [depth= 1] . ( 481 sec) [ -13706.9893] [ 2348] [depth= 2] . ( 482 sec) [ -13697.2977] [ 2347] [depth= 1] . ( 484 sec) [ -13690.2110] [ 2346] [depth= 3] . ( 486 sec) [ -13682.8075] [ 2346] [depth= 2] . ( 487 sec) [ -13645.3585] [ 2337] [depth= 1] . ( 489 sec) [ -13642.9543] [ 2337] [depth= 3] . ( 490 sec) [ -13640.3960] [ 2337] [depth= 3] . ( 492 sec) [ -13634.9584] [ 2337] [depth= 2] . ( 497 sec) [ -13433.4205] [Branch lengths ] . ( 500 sec) [ -13419.4709] [Alpha ][ 0.680962] . ( 504 sec) [ -13419.2454] [ 2335] [depth= 1] . ( 507 sec) [ -13411.9899] [ 2334] [depth= 1] . ( 508 sec) [ -13410.9692] [ 2333] [depth= 1] . ( 509 sec) [ -13408.5792] [ 2332] [depth= 1] . ( 511 sec) [ -13408.5687] [ 2332] [depth= 1] . ( 520 sec) [ -13398.2279] [ 2329] [depth= 3] . ( 522 sec) [ -13377.1468] [ 2326] [depth= 23] . ( 523 sec) [ -13370.9876] [ 2323] [depth= 3] . ( 527 sec) [ -13369.7445] [ 2322] [depth= 3] . ( 533 sec) [ -13369.7264] [ 2324] [depth= 1] . ( 539 sec) [ -13357.0272] [ 2320] [depth= 1] . ( 540 sec) [ -13353.1564] [ 2318] [depth= 2] . ( 542 sec) [ -13351.0488] [ 2317] [depth= 1] . ( 543 sec) [ -13350.0310] [ 2316] [depth= 3] . ( 548 sec) [ -13341.2849] [ 2312] [depth= 1] . ( 549 sec) [ -13339.6876] [ 2312] [depth= 2] . ( 556 sec) [ -13339.5414] [ 2312] [depth= 2] . ( 558 sec) [ -13336.7043] [ 2311] [depth= 4] . ( 562 sec) [ -13331.1188] [ 2304] [depth= 25] . ( 563 sec) [ -13325.1464] [ 2303] [depth= 3] . ( 565 sec) [ -13305.5521] [ 2291] [depth= 10] . ( 566 sec) [ -13300.5240] [ 2287] [depth= 3] . ( 567 sec) [ -13299.6775] [ 2287] [depth= 1] . ( 576 sec) [ -13298.4742] [ 2285] [depth= 1] . ( 577 sec) [ -13294.6651] [ 2284] [depth= 1] . ( 583 sec) [ -13282.0499] [ 2279] [depth= 8] . ( 586 sec) [ -13271.1841] [ 2277] [depth= 1] . ( 587 sec) [ -13270.4467] [ 2277] [depth= 2] . ( 591 sec) [ -13268.7447] [ 2276] [depth= 1] . ( 594 sec) [ -13268.6271] [ 2275] [depth= 1] . ( 596 sec) [ -13268.0464] [ 2275] [depth= 1] . ( 600 sec) [ -13262.9137] [ 2271] [depth= 1] . ( 601 sec) [ -13262.8014] [ 2272] [depth= 2] . ( 608 sec) [ -13262.1001] [ 2271] [depth= 1] . ( 609 sec) [ -13261.3311] [ 2271] [depth= 1] . ( 610 sec) [ -13258.5394] [ 2271] [depth= 1] . ( 616 sec) [ -13258.4625] [ 2270] [depth= 4] . ( 618 sec) [ -13257.4267] [ 2270] [depth= 3] . ( 620 sec) [ -13256.4307] [ 2272] [depth= 2] . ( 625 sec) [ -13253.6058] [ 2271] [depth= 1] . ( 627 sec) [ -13253.4123] [ 2270] [depth= 7] . ( 629 sec) [ -13253.3195] [ 2270] [depth= 3] . ( 630 sec) [ -13251.6619] [ 2269] [depth= 2] . ( 632 sec) [ -13251.5040] [ 2269] [depth= 2] . ( 633 sec) [ -13249.8547] [ 2268] [depth= 5] . ( 636 sec) [ -13248.7372] [ 2267] [depth= 1] . ( 637 sec) [ -13248.0361] [ 2267] [depth= 1] . ( 640 sec) [ -13247.3412] [ 2265] [depth= 1] . ( 641 sec) [ -13247.0641] [ 2265] [depth= 6] . ( 643 sec) [ -13244.6068] [ 2265] [depth= 4] . ( 647 sec) [ -13240.9755] [ 2264] [depth= 13] . ( 649 sec) [ -13240.7430] [ 2264] [depth= 1] . ( 655 sec) [ -13240.5255] [ 2264] [depth= 3] . ( 662 sec) [ -13239.1270] [ 2264] [depth= 1] . ( 664 sec) [ -13237.0981] [ 2264] [depth= 1] . ( 667 sec) [ -13171.1294] [ 2247] [depth= 23] . ( 673 sec) [ -13167.8315] [ 2246] [depth= 2] . ( 674 sec) [ -13165.5011] [ 2245] [depth= 1] . ( 675 sec) [ -13164.7457] [ 2245] [depth= 1] . ( 679 sec) [ -13164.7297] [ 2245] [depth= 1] . ( 685 sec) [ -13164.0632] [ 2245] [depth= 1] . ( 688 sec) [ -13164.0323] [ 2245] [depth= 1] . ( 692 sec) [ -13133.0299] [ 2237] [depth= 6] . ( 694 sec) [ -13132.3062] [ 2238] [depth= 1] . ( 700 sec) [ -13130.0464] [ 2238] [depth= 1] . ( 702 sec) [ -13119.1151] [ 2239] [depth= 4] . ( 708 sec) [ -13116.6915] [ 2239] [depth= 6] . ( 709 sec) [ -13094.3062] [ 2234] [depth= 10] . ( 732 sec) [ -13090.9851] [ 2235] [depth= 1] . ( 734 sec) [ -13090.8188] [ 2235] [depth= 1] . ( 736 sec) [ -13090.7613] [ 2235] [depth= 1] . ( 738 sec) [ -13090.7324] [ 2235] [depth= 2] . ( 740 sec) [ -13090.6735] [ 2236] [depth= 1] . ( 742 sec) [ -13086.8453] [ 2227] [depth= 2] . ( 743 sec) [ -13084.4769] [ 2227] [depth= 1] . ( 749 sec) [ -13081.0553] [ 2227] [depth= 1] . ( 766 sec) [ -13073.1383] [ 2229] [depth= 3] . ( 787 sec) [ -13073.1064] [ 2229] [depth= 1] . ( 788 sec) [ -13072.3909] [ 2228] [depth= 1] . ( 813 sec) [ -13072.2351] [ 2227] [depth= 1] . ( 816 sec) [ -13071.1459] [ 2229] [depth= 2] . ( 820 sec) [ -13069.1677] [ 2225] [depth= 4] . ( 821 sec) [ -13068.3862] [ 2225] [depth= 4] . ( 823 sec) [ -13067.7177] [ 2225] [depth= 1] . ( 827 sec) [ -13056.5768] [ 2219] [depth= 2] . ( 831 sec) [ -13053.7249] [ 2217] [depth= 5] . ( 833 sec) [ -13052.9620] [ 2219] [depth= 1] . ( 839 sec) [ -13052.8541] [ 2219] [depth= 1] . ( 843 sec) [ -13051.8711] [ 2219] [depth= 2] . ( 845 sec) [ -13047.6948] [ 2220] [depth= 5] . ( 854 sec) [ -13047.2948] [ 2221] [depth= 1] . ( 862 sec) [ -13047.2241] [ 2221] [depth= 1] . ( 864 sec) [ -13041.5801] [ 2219] [depth= 1] . ( 865 sec) [ -13003.3626] [ 2207] [depth= 12] . ( 866 sec) [ -13001.5239] [ 2207] [depth= 1] . ( 880 sec) [ -13001.2234] [ 2206] [depth= 1] . ( 890 sec) [ -12980.6034] [ 2199] [depth= 1] . ( 891 sec) [ -12962.2156] [ 2190] [depth= 7] . ( 900 sec) [ -12961.8621] [ 2189] [depth= 1] . ( 907 sec) [ -12960.9085] [ 2189] [depth= 1] . ( 914 sec) [ -12960.6126] [ 2189] [depth= 1] . ( 924 sec) [ -12960.2878] [ 2190] [depth= 1] . ( 926 sec) [ -12959.9104] [ 2190] [depth= 1] . ( 927 sec) [ -12959.7708] [ 2190] [depth= 2] . ( 929 sec) [ -12957.2385] [ 2193] [depth= 1] . ( 939 sec) [ -12949.9763] [ 2193] [depth= 2] . ( 943 sec) [ -12942.2980] [ 2191] [depth= 6] . ( 945 sec) [ -12937.3205] [ 2189] [depth= 1] . ( 947 sec) [ -12935.8896] [ 2190] [depth= 1] . ( 949 sec) [ -12935.8662] [ 2192] [depth= 2] . ( 954 sec) [ -12935.8151] [ 2192] [depth= 1] . ( 956 sec) [ -12935.2224] [ 2192] [depth= 1] . ( 958 sec) [ -12931.8150] [ 2191] [depth= 1] . ( 970 sec) [ -12931.7949] [ 2191] [depth= 1] . ( 977 sec) [ -12927.3001] [ 2190] [depth= 1] . ( 980 sec) [ -12926.7874] [ 2190] [depth= 1] . ( 982 sec) [ -12926.6331] [ 2191] [depth= 1] . ( 983 sec) [ -12926.5194] [ 2189] [depth= 2] . ( 984 sec) [ -12926.1891] [ 2189] [depth= 1] . ( 988 sec) [ -12926.0964] [ 2189] [depth= 1] . ( 991 sec) [ -12921.6495] [ 2187] [depth= 5] . ( 992 sec) [ -12919.5970] [ 2186] [depth= 1] . ( 997 sec) [ -12919.4983] [ 2187] [depth= 2] . ( 999 sec) [ -12919.4755] [ 2187] [depth= 1] . ( 1012 sec) [ -12919.1445] [ 2187] [depth= 2] . ( 1014 sec) [ -12911.8657] [ 2183] [depth= 1] . ( 1021 sec) [ -12911.8245] [ 2183] [depth= 2] . ( 1023 sec) [ -12909.0003] [ 2180] [depth= 1] . ( 1027 sec) [ -12906.9293] [ 2179] [depth= 2] . ( 1045 sec) [ -12904.2080] [ 2178] [depth= 7] . ( 1071 sec) [ -12904.0984] [ 2178] [depth= 3] . ( 1073 sec) [ -12903.7867] [ 2178] [depth= 1] . ( 1076 sec) [ -12902.9275] [ 2177] [depth= 3] . ( 1084 sec) [ -12902.8999] [ 2177] [depth= 1] . ( 1103 sec) [ -12878.4515] [Branch lengths ] . ( 1105 sec) [ -12877.9816] [Alpha ][ 0.722792] . ( 1132 sec) [ -12877.4518] [ 2176] [depth= 3] . ( 1133 sec) [ -12876.9989] [ 2176] [depth= 1] . ( 1156 sec) [ -12875.6766] [ 2176] [depth= 1] . ( 1158 sec) [ -12875.2603] [ 2176] [depth= 1] . ( 1223 sec) [ -12875.1264] [ 2176] [depth= 1] . ( 1239 sec) [ -12874.4028] [ 2177] [depth= 6] . ( 1291 sec) [ -12874.2317] [ 2177] [depth= 1] . ( 1305 sec) [ -12873.4075] [ 2177] [depth= 2] . ( 1306 sec) [ -12873.1295] [ 2177] [depth= 1] . ( 1312 sec) [ -12872.2789] [ 2177] [depth= 2] . ( 1397 sec) [ -12871.5997] [ 2177] [depth= 4] . ( 1403 sec) [ -12871.4910] [ 2177] [depth= 1] . ( 1460 sec) [ -12871.4807] [ 2177] [depth= 3] . ( 1499 sec) [ -12870.9579] [ 2177] [depth= 1] . ( 1512 sec) [ -12870.9154] [ 2177] [depth= 1] . ( 1733 sec) [ -12870.5296] [ 2178] [depth= 1] . ( 1735 sec) [ -12870.5187] [ 2178] [depth= 1] . ( 1757 sec) [ -12868.1710] [ 2178] [depth= 3] . ( 1806 sec) [ -12868.1015] [ 2178] [depth= 3] . ( 1843 sec) [ -12864.7324] [ 2176] [depth= 5] . ( 1847 sec) [ -12864.6561] [ 2176] [depth= 2] . ( 1878 sec) [ -12863.6682] [ 2176] [depth= 1] . ( 1902 sec) [ -12863.6214] [ 2176] [depth= 1] . ( 1903 sec) [ -12863.4699] [ 2176] [depth= 2] . ( 1905 sec) [ -12863.4099] [ 2177] [depth= 1] . ( 2006 sec) [ -12855.5682] [Branch lengths ] . ( 2009 sec) [ -12855.5652] [Alpha ][ 0.726257] . ( 2061 sec) [ -12855.4923] [ 2177] [depth= 1] . ( 2150 sec) [ -12852.6165] [ 2172] [depth= 11] . ( 2160 sec) [ -12852.3895] [ 2172] [depth= 1] . ( 2311 sec) [ -12852.3203] [ 2172] [depth= 1] . ( 2388 sec) [ -12852.2715] [ 2172] [depth= 1] . ( 2409 sec) [ -12852.2392] [ 2172] [depth= 2] . ( 2855 sec) [ -12852.1649] [ 2172] [depth= 2] . ( 3005 sec) [ -12850.4199] [Branch lengths ] . ( 3007 sec) [ -12850.4170] [Alpha ][ 0.729700] . ( 3878 sec) [ -12850.3705] [ 2172] [depth= 2] . ( 4029 sec) [ -12849.9773] [Branch lengths ] . ( 4031 sec) [ -12849.9772] [Alpha ][ 0.730430] . ( 4032 sec) [ -12849.9772] [Topology ] . ( 4045 sec) [ -12849.8938] [Topology ] . ( 4058 sec) [ -12849.8465] [Topology ] . ( 4071 sec) [ -12849.8119] [Topology ] . ( 4084 sec) [ -12849.7843] [Topology ] . ( 4097 sec) [ -12849.7619] [Topology ] . ( 4110 sec) [ -12849.7431] [Topology ] . ( 4112 sec) [ -12849.7431] [Alpha ][ 0.730430] . ( 4112 sec) [ -12849.7431] [Topology ] . ( 4125 sec) [ -12849.7270] [Topology ] . ( 4138 sec) [ -12849.7176] [Topology ] . ( 4151 sec) [ -12849.7138] [Topology ] . ( 4164 sec) [ -12849.7123] [Topology ] . ( 4177 sec) [ -12849.7115] [Topology ] . ( 4179 sec) [ -12849.7115] [Alpha ][ 0.730430] . ( 4180 sec) [ -12849.7115] [Topology ] . ( 4193 sec) [ -12849.7111] [Topology ] . ( 4195 sec) [ -12849.7111] [Alpha ][ 0.730430] . Checking for NNIs, optimizing five branches... . ( 4289 sec) [ -12849.7085] [Topology ] . Checking for NNIs, optimizing five branches... . ( 4384 sec) [ -12849.7084] [Topology ] . Checking for NNIs, optimizing five branches... . ( 4478 sec) [ -12849.7065] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -12849.706515. . [Random start 3/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 5 sec) [ -35316.8169] [Alpha ][ 0.500960] . ( 7 sec) [ -35234.1350] [ 5069] [depth= 10] . ( 9 sec) [ -35167.3845] [ 5056] [depth= 12] . ( 9 sec) [ -35155.4003] [ 5054] [depth= 1] . ( 11 sec) [ -35145.9098] [ 5048] [depth= 13] . ( 12 sec) [ -35144.9707] [ 5047] [depth= 5] . ( 13 sec) [ -35058.5370] [ 5045] [depth= 1] . ( 14 sec) [ -35038.4348] [ 5042] [depth= 3] . ( 16 sec) [ -34728.0747] [ 5037] [depth= 8] . ( 17 sec) [ -34455.4923] [ 5019] [depth= 1] . ( 18 sec) [ -34330.6622] [ 5014] [depth= 11] . ( 19 sec) [ -33805.8027] [ 5012] [depth= 3] . ( 21 sec) [ -33485.6439] [ 5013] [depth= 2] . ( 22 sec) [ -33463.4917] [ 5007] [depth= 5] . ( 23 sec) [ -33463.3552] [ 5006] [depth= 1] . ( 25 sec) [ -33048.5550] [ 4999] [depth= 9] . ( 26 sec) [ -32436.7749] [ 4996] [depth= 5] . ( 27 sec) [ -32069.5574] [ 4905] [depth= 11] . ( 28 sec) [ -32017.0635] [ 4903] [depth= 16] . ( 29 sec) [ -31332.3228] [ 4888] [depth= 4] . ( 31 sec) [ -31309.8158] [ 4882] [depth= 6] . ( 32 sec) [ -31179.3353] [ 4879] [depth= 4] . ( 33 sec) [ -31169.7077] [ 4878] [depth= 2] . ( 34 sec) [ -31161.4443] [ 4875] [depth= 2] . ( 36 sec) [ -31144.4252] [ 4873] [depth= 2] . ( 37 sec) [ -31022.6752] [ 4859] [depth= 27] . ( 38 sec) [ -31013.5412] [ 4858] [depth= 1] . ( 40 sec) [ -30992.2034] [ 4852] [depth= 32] . ( 41 sec) [ -30689.1046] [ 4834] [depth= 29] . ( 43 sec) [ -30661.9226] [ 4833] [depth= 5] . ( 46 sec) [ -30599.2915] [ 4819] [depth= 3] . ( 47 sec) [ -30555.8773] [ 4818] [depth= 3] . ( 49 sec) [ -29915.3782] [ 4804] [depth= 28] . ( 50 sec) [ -29849.7175] [ 4803] [depth= 1] . ( 51 sec) [ -29746.5729] [ 4722] [depth= 31] . ( 53 sec) [ -29743.9424] [ 4720] [depth= 2] . ( 55 sec) [ -29511.3725] [ 4676] [depth= 9] . ( 56 sec) [ -29366.9280] [ 4671] [depth= 1] . ( 57 sec) [ -29327.7355] [ 4666] [depth= 8] . ( 59 sec) [ -29308.8939] [ 4666] [depth= 1] . ( 60 sec) [ -29283.4351] [ 4664] [depth= 28] . ( 61 sec) [ -29251.0821] [ 4663] [depth= 2] . ( 63 sec) [ -29198.8320] [ 4644] [depth= 4] . ( 64 sec) [ -29154.8033] [ 4644] [depth= 2] . ( 65 sec) [ -29019.6816] [ 4617] [depth= 8] . ( 67 sec) [ -28982.9610] [ 4609] [depth= 23] . ( 68 sec) [ -28925.2687] [ 4598] [depth= 3] . ( 70 sec) [ -28901.6413] [ 4595] [depth= 14] . ( 72 sec) [ -28814.6186] [ 4579] [depth= 37] . ( 72 sec) [ -28714.4128] [ 4576] [depth= 1] . ( 74 sec) [ -28640.1296] [ 4574] [depth= 15] . ( 76 sec) [ -28554.9861] [ 4563] [depth= 32] . ( 77 sec) [ -28520.3966] [ 4564] [depth= 1] . ( 79 sec) [ -28468.0029] [ 4548] [depth= 27] . ( 80 sec) [ -28314.4606] [ 4537] [depth= 4] . ( 82 sec) [ -28080.0587] [ 4496] [depth= 11] . ( 83 sec) [ -27927.1342] [ 4418] [depth= 20] . ( 85 sec) [ -27854.5196] [ 4418] [depth= 10] . ( 86 sec) [ -27586.5798] [ 4364] [depth= 13] . ( 88 sec) [ -26815.3217] [ 4289] [depth= 9] . ( 89 sec) [ -26800.9961] [ 4285] [depth= 20] . ( 90 sec) [ -26712.0609] [ 4284] [depth= 2] . ( 92 sec) [ -26560.0396] [ 4254] [depth= 19] . ( 93 sec) [ -26479.4777] [ 4254] [depth= 1] . ( 94 sec) [ -26375.9080] [ 4227] [depth= 5] . ( 96 sec) [ -26373.0624] [ 4227] [depth= 2] . ( 97 sec) [ -26371.7736] [ 4230] [depth= 1] . ( 99 sec) [ -26285.6876] [ 4225] [depth= 15] . ( 100 sec) [ -26271.6271] [ 4225] [depth= 24] . ( 101 sec) [ -26218.1221] [ 4225] [depth= 5] . ( 103 sec) [ -26196.4610] [ 4219] [depth= 20] . ( 104 sec) [ -26176.4501] [ 4219] [depth= 1] . ( 105 sec) [ -26157.4755] [ 4212] [depth= 23] . ( 106 sec) [ -26058.1558] [ 4191] [depth= 1] . ( 108 sec) [ -26036.0196] [ 4187] [depth= 20] . ( 109 sec) [ -25996.2385] [ 4177] [depth= 1] . ( 110 sec) [ -25968.5875] [ 4172] [depth= 15] . ( 112 sec) [ -25652.5305] [ 4150] [depth= 25] . ( 113 sec) [ -25400.3866] [ 4054] [depth= 21] . ( 115 sec) [ -25228.2414] [ 4077] [depth= 34] . ( 116 sec) [ -25030.6378] [ 4038] [depth= 33] . ( 118 sec) [ -24913.3369] [ 4011] [depth= 13] . ( 119 sec) [ -24772.1232] [ 3984] [depth= 11] . ( 120 sec) [ -24753.1400] [ 3985] [depth= 2] . ( 122 sec) [ -24710.4833] [ 3971] [depth= 19] . ( 123 sec) [ -24617.4823] [ 3943] [depth= 15] . ( 125 sec) [ -24526.7768] [ 3931] [depth= 1] . ( 126 sec) [ -24496.2975] [ 3924] [depth= 25] . ( 128 sec) [ -24478.8639] [ 3920] [depth= 1] . ( 130 sec) [ -24477.0646] [ 3920] [depth= 1] . ( 132 sec) [ -24448.8015] [ 3912] [depth= 8] . ( 133 sec) [ -24410.7448] [ 3909] [depth= 2] . ( 134 sec) [ -24399.0932] [ 3900] [depth= 6] . ( 136 sec) [ -24364.5663] [ 3896] [depth= 6] . ( 137 sec) [ -24276.5782] [ 3879] [depth= 14] . ( 139 sec) [ -24163.7360] [ 3861] [depth= 10] . ( 140 sec) [ -24154.4283] [ 3859] [depth= 6] . ( 142 sec) [ -24091.8215] [ 3854] [depth= 19] . ( 144 sec) [ -23895.1911] [ 3806] [depth= 19] . ( 146 sec) [ -23798.1023] [ 3783] [depth= 25] . ( 147 sec) [ -23742.0492] [ 3775] [depth= 9] . ( 148 sec) [ -23714.4955] [ 3774] [depth= 3] . ( 149 sec) [ -23693.9754] [ 3772] [depth= 1] . ( 151 sec) [ -23690.7758] [ 3772] [depth= 1] . ( 151 sec) [ -23654.2292] [ 3764] [depth= 3] . ( 153 sec) [ -23539.6648] [ 3762] [depth= 3] . ( 154 sec) [ -22684.1288] [ 3714] [depth= 9] . ( 156 sec) [ -21840.9390] [ 3682] [depth= 1] . ( 157 sec) [ -21687.8410] [ 3650] [depth= 29] . ( 159 sec) [ -21651.3119] [ 3636] [depth= 14] . ( 161 sec) [ -21490.8278] [ 3633] [depth= 11] . ( 162 sec) [ -21488.1747] [ 3633] [depth= 1] . ( 163 sec) [ -21453.0879] [ 3625] [depth= 3] . ( 165 sec) [ -21393.0668] [ 3608] [depth= 11] . ( 166 sec) [ -21353.2377] [ 3600] [depth= 2] . ( 167 sec) [ -21277.1506] [ 3581] [depth= 1] . ( 168 sec) [ -21207.9573] [ 3563] [depth= 25] . ( 170 sec) [ -21094.5036] [ 3547] [depth= 24] . ( 172 sec) [ -21072.2026] [ 3543] [depth= 12] . ( 174 sec) [ -20995.0563] [ 3533] [depth= 20] . ( 175 sec) [ -20984.9451] [ 3533] [depth= 2] . ( 176 sec) [ -20955.0577] [ 3532] [depth= 8] . ( 178 sec) [ -20931.2106] [ 3526] [depth= 6] . ( 180 sec) [ -20924.9613] [ 3524] [depth= 5] . ( 182 sec) [ -20891.3979] [ 3526] [depth= 1] . ( 183 sec) [ -20791.9007] [ 3512] [depth= 7] . ( 185 sec) [ -20714.3141] [ 3490] [depth= 1] . ( 187 sec) [ -20344.1584] [ 3428] [depth= 17] . ( 188 sec) [ -20313.4447] [ 3427] [depth= 1] . ( 190 sec) [ -20249.1701] [ 3406] [depth= 8] . ( 191 sec) [ -20147.1468] [ 3389] [depth= 15] . ( 193 sec) [ -20087.2521] [ 3380] [depth= 1] . ( 194 sec) [ -20000.3412] [ 3361] [depth= 8] . ( 197 sec) [ -19934.5449] [ 3348] [depth= 4] . ( 198 sec) [ -19932.0629] [ 3340] [depth= 2] . ( 199 sec) [ -19919.4098] [ 3334] [depth= 3] . ( 201 sec) [ -19850.6158] [ 3327] [depth= 12] . ( 202 sec) [ -19792.1054] [ 3320] [depth= 4] . ( 203 sec) [ -19669.3525] [ 3295] [depth= 19] . ( 204 sec) [ -19610.8249] [ 3287] [depth= 4] . ( 206 sec) [ -19277.2743] [ 3270] [depth= 10] . ( 207 sec) [ -19277.0624] [ 3273] [depth= 3] . ( 209 sec) [ -19233.6079] [ 3260] [depth= 12] . ( 211 sec) [ -19222.2328] [ 3260] [depth= 2] . ( 212 sec) [ -18957.0492] [ 3260] [depth= 8] . ( 215 sec) [ -18818.4743] [ 3253] [depth= 14] . ( 216 sec) [ -18700.7710] [ 3254] [depth= 1] . ( 217 sec) [ -18696.5363] [ 3252] [depth= 2] . ( 218 sec) [ -18654.1364] [ 3249] [depth= 1] . ( 219 sec) [ -18619.8716] [ 3232] [depth= 2] . ( 220 sec) [ -18592.7890] [ 3217] [depth= 5] . ( 222 sec) [ -18577.9723] [ 3207] [depth= 4] . ( 224 sec) [ -18532.4850] [ 3193] [depth= 11] . ( 226 sec) [ -18528.3385] [ 3193] [depth= 1] . ( 227 sec) [ -18526.4538] [ 3193] [depth= 1] . ( 229 sec) [ -18517.6906] [ 3195] [depth= 2] . ( 230 sec) [ -18516.6483] [ 3196] [depth= 1] . ( 232 sec) [ -18511.7654] [ 3195] [depth= 1] . ( 234 sec) [ -18408.8074] [ 3155] [depth= 13] . ( 235 sec) [ -18386.5508] [ 3155] [depth= 2] . ( 237 sec) [ -18334.0343] [ 3132] [depth= 16] . ( 238 sec) [ -18268.7217] [ 3132] [depth= 2] . ( 240 sec) [ -18139.4940] [ 3125] [depth= 11] . ( 241 sec) [ -18096.2069] [ 3118] [depth= 9] . ( 242 sec) [ -18085.1803] [ 3116] [depth= 1] . ( 244 sec) [ -18056.9174] [ 3108] [depth= 6] . ( 245 sec) [ -18040.1318] [ 3106] [depth= 1] . ( 246 sec) [ -18011.3327] [ 3100] [depth= 6] . ( 247 sec) [ -17982.4933] [ 3100] [depth= 1] . ( 249 sec) [ -17904.6168] [ 3084] [depth= 4] . ( 250 sec) [ -17846.3163] [ 3082] [depth= 1] . ( 252 sec) [ -17839.0368] [ 3080] [depth= 13] . ( 254 sec) [ -17695.0223] [ 3051] [depth= 14] . ( 258 sec) [ -17606.6505] [ 3024] [depth= 6] . ( 259 sec) [ -17554.8134] [ 3007] [depth= 16] . ( 261 sec) [ -17535.1235] [ 3002] [depth= 10] . ( 263 sec) [ -17486.4402] [ 2995] [depth= 3] . ( 264 sec) [ -17447.5156] [ 2992] [depth= 16] . ( 266 sec) [ -17384.3627] [ 2991] [depth= 6] . ( 270 sec) [ -17252.9322] [ 2985] [depth= 9] . ( 271 sec) [ -17242.1356] [ 2983] [depth= 1] . ( 272 sec) [ -17236.6921] [ 2983] [depth= 1] . ( 274 sec) [ -17202.0539] [ 2974] [depth= 4] . ( 275 sec) [ -17186.1327] [ 2981] [depth= 1] . ( 276 sec) [ -17177.7671] [ 2977] [depth= 1] . ( 278 sec) [ -17175.6481] [ 2976] [depth= 3] . ( 280 sec) [ -17097.1504] [ 2957] [depth= 13] . ( 282 sec) [ -16979.7897] [ 2945] [depth= 2] . ( 283 sec) [ -16967.9837] [ 2942] [depth= 3] . ( 285 sec) [ -16932.4788] [ 2938] [depth= 2] . ( 286 sec) [ -16932.3584] [ 2937] [depth= 1] . ( 287 sec) [ -16922.8100] [ 2937] [depth= 2] . ( 288 sec) [ -16922.5578] [ 2937] [depth= 2] . ( 290 sec) [ -16921.4897] [ 2937] [depth= 1] . ( 291 sec) [ -16900.2597] [ 2931] [depth= 5] . ( 292 sec) [ -16890.0225] [ 2929] [depth= 4] . ( 294 sec) [ -16884.0380] [ 2927] [depth= 1] . ( 295 sec) [ -16865.4311] [ 2925] [depth= 2] . ( 297 sec) [ -16847.7689] [ 2921] [depth= 6] . ( 299 sec) [ -16769.0373] [ 2904] [depth= 5] . ( 300 sec) [ -16744.0791] [ 2907] [depth= 2] . ( 302 sec) [ -16738.9131] [ 2902] [depth= 2] . ( 303 sec) [ -16729.1373] [ 2902] [depth= 1] . ( 305 sec) [ -16690.4173] [ 2873] [depth= 6] . ( 306 sec) [ -16675.1374] [ 2870] [depth= 4] . ( 308 sec) [ -16666.7031] [ 2868] [depth= 9] . ( 309 sec) [ -16476.7718] [ 2846] [depth= 2] . ( 310 sec) [ -16467.1245] [ 2844] [depth= 4] . ( 312 sec) [ -16464.0110] [ 2845] [depth= 7] . ( 313 sec) [ -16460.4947] [ 2842] [depth= 4] . ( 318 sec) [ -16452.8035] [ 2841] [depth= 1] . ( 320 sec) [ -16450.2892] [ 2843] [depth= 2] . ( 321 sec) [ -16208.3109] [ 2842] [depth= 1] . ( 322 sec) [ -16207.8081] [ 2842] [depth= 2] . ( 325 sec) [ -16199.6686] [ 2840] [depth= 6] . ( 327 sec) [ -16155.2336] [ 2831] [depth= 4] . ( 328 sec) [ -16153.4482] [ 2831] [depth= 2] . ( 330 sec) [ -16150.1117] [ 2829] [depth= 7] . ( 331 sec) [ -16117.8988] [ 2827] [depth= 5] . ( 333 sec) [ -16085.6016] [ 2817] [depth= 11] . ( 336 sec) [ -15821.5530] [ 2740] [depth= 7] . ( 336 sec) [ -15800.9131] [ 2737] [depth= 4] . ( 338 sec) [ -15662.7294] [ 2730] [depth= 11] . ( 339 sec) [ -15626.0015] [ 2704] [depth= 4] . ( 341 sec) [ -15621.9822] [ 2704] [depth= 1] . ( 342 sec) [ -15618.7686] [ 2701] [depth= 4] . ( 343 sec) [ -15615.2311] [ 2698] [depth= 4] . ( 345 sec) [ -15575.2152] [ 2692] [depth= 1] . ( 346 sec) [ -15571.0903] [ 2691] [depth= 1] . ( 347 sec) [ -15552.3799] [ 2686] [depth= 10] . ( 348 sec) [ -15543.1623] [ 2686] [depth= 3] . ( 350 sec) [ -15510.9648] [ 2687] [depth= 3] . ( 351 sec) [ -15509.0666] [ 2686] [depth= 1] . ( 352 sec) [ -15391.1537] [ 2655] [depth= 9] . ( 354 sec) [ -15385.4211] [ 2652] [depth= 5] . ( 355 sec) [ -15381.9367] [ 2653] [depth= 1] . ( 357 sec) [ -15362.7219] [ 2651] [depth= 5] . ( 360 sec) [ -15349.4718] [ 2646] [depth= 2] . ( 361 sec) [ -15338.9267] [ 2646] [depth= 2] . ( 363 sec) [ -15322.7752] [ 2644] [depth= 3] . ( 364 sec) [ -15311.4876] [ 2643] [depth= 5] . ( 365 sec) [ -15303.2185] [ 2640] [depth= 2] . ( 367 sec) [ -15274.5063] [ 2634] [depth= 5] . ( 368 sec) [ -15251.1320] [ 2632] [depth= 5] . ( 371 sec) [ -15212.1986] [ 2626] [depth= 3] . ( 372 sec) [ -15189.4303] [ 2622] [depth= 2] . ( 374 sec) [ -15174.5114] [ 2620] [depth= 1] . ( 377 sec) [ -15167.9730] [ 2619] [depth= 1] . ( 378 sec) [ -15083.2211] [ 2600] [depth= 16] . ( 381 sec) [ -15074.3290] [ 2593] [depth= 2] . ( 382 sec) [ -15058.9709] [ 2590] [depth= 4] . ( 383 sec) [ -15055.1771] [ 2590] [depth= 2] . ( 385 sec) [ -14989.2617] [ 2582] [depth= 3] . ( 386 sec) [ -14973.1424] [ 2582] [depth= 2] . ( 388 sec) [ -14954.6274] [ 2578] [depth= 11] . ( 389 sec) [ -14954.2929] [ 2578] [depth= 1] . ( 391 sec) [ -14945.5824] [ 2578] [depth= 1] . ( 392 sec) [ -14943.0051] [ 2577] [depth= 1] . ( 393 sec) [ -14941.4943] [ 2576] [depth= 2] . ( 395 sec) [ -14929.9704] [ 2560] [depth= 5] . ( 396 sec) [ -14929.5588] [ 2559] [depth= 3] . ( 398 sec) [ -14842.4176] [ 2539] [depth= 1] . ( 399 sec) [ -14829.7188] [ 2529] [depth= 1] . ( 401 sec) [ -14724.7604] [ 2517] [depth= 9] . ( 408 sec) [ -14717.8839] [ 2516] [depth= 2] . ( 409 sec) [ -14717.6316] [ 2515] [depth= 1] . ( 411 sec) [ -14690.5101] [ 2504] [depth= 3] . ( 413 sec) [ -14686.1365] [ 2505] [depth= 1] . ( 415 sec) [ -14659.8577] [ 2504] [depth= 2] . ( 417 sec) [ -14587.5334] [ 2488] [depth= 1] . ( 418 sec) [ -14581.8662] [ 2488] [depth= 1] . ( 426 sec) [ -14567.5443] [ 2482] [depth= 3] . ( 428 sec) [ -14563.3091] [ 2482] [depth= 1] . ( 429 sec) [ -14558.5533] [ 2481] [depth= 2] . ( 431 sec) [ -14550.8356] [ 2479] [depth= 1] . ( 432 sec) [ -14543.4606] [ 2477] [depth= 4] . ( 437 sec) [ -14536.7460] [ 2471] [depth= 2] . ( 438 sec) [ -14385.3549] [ 2471] [depth= 2] . ( 440 sec) [ -14384.6722] [ 2471] [depth= 2] . ( 441 sec) [ -14374.8502] [ 2472] [depth= 2] . ( 442 sec) [ -14374.5920] [ 2467] [depth= 8] . ( 445 sec) [ -14369.1326] [ 2464] [depth= 2] . ( 447 sec) [ -14367.2816] [ 2462] [depth= 1] . ( 449 sec) [ -14345.0767] [ 2458] [depth= 12] . ( 451 sec) [ -14303.2349] [ 2448] [depth= 1] . ( 453 sec) [ -14272.8306] [ 2445] [depth= 3] . ( 454 sec) [ -14260.3710] [ 2444] [depth= 3] . ( 456 sec) [ -14216.0657] [ 2423] [depth= 13] . ( 457 sec) [ -14159.5195] [ 2421] [depth= 5] . ( 461 sec) [ -14156.7658] [ 2421] [depth= 1] . ( 462 sec) [ -14156.3303] [ 2421] [depth= 1] . ( 464 sec) [ -14153.9632] [ 2421] [depth= 1] . ( 465 sec) [ -14151.5158] [ 2419] [depth= 1] . ( 467 sec) [ -14136.4960] [ 2416] [depth= 8] . ( 470 sec) [ -14129.7776] [ 2415] [depth= 1] . ( 472 sec) [ -14128.6483] [ 2415] [depth= 1] . ( 474 sec) [ -14123.3065] [ 2415] [depth= 1] . ( 475 sec) [ -14107.4558] [ 2413] [depth= 2] . ( 476 sec) [ -14089.7287] [ 2412] [depth= 2] . ( 478 sec) [ -14083.3833] [ 2411] [depth= 6] . ( 480 sec) [ -14081.6481] [ 2411] [depth= 2] . ( 482 sec) [ -14008.0956] [ 2386] [depth= 15] . ( 483 sec) [ -14001.1702] [ 2386] [depth= 1] . ( 485 sec) [ -13999.6537] [ 2386] [depth= 4] . ( 486 sec) [ -13987.2260] [ 2381] [depth= 8] . ( 488 sec) [ -13962.8017] [ 2378] [depth= 11] . ( 489 sec) [ -13929.1016] [ 2376] [depth= 14] . ( 491 sec) [ -13879.6864] [ 2367] [depth= 4] . ( 493 sec) [ -13869.1352] [ 2366] [depth= 1] . ( 494 sec) [ -13852.0533] [ 2365] [depth= 9] . ( 496 sec) [ -13843.1332] [ 2356] [depth= 8] . ( 498 sec) [ -13843.0891] [ 2358] [depth= 2] . ( 499 sec) [ -13824.7169] [ 2354] [depth= 13] . ( 505 sec) [ -13567.9160] [Branch lengths ] . ( 507 sec) [ -13552.7601] [Alpha ][ 0.685317] . ( 511 sec) [ -13551.8277] [ 2356] [depth= 1] . ( 512 sec) [ -13549.8380] [ 2355] [depth= 2] . ( 514 sec) [ -13544.5532] [ 2355] [depth= 3] . ( 520 sec) [ -13542.5838] [ 2354] [depth= 3] . ( 522 sec) [ -13542.0496] [ 2353] [depth= 1] . ( 524 sec) [ -13485.1050] [ 2340] [depth= 5] . ( 529 sec) [ -13483.5043] [ 2340] [depth= 1] . ( 533 sec) [ -13483.4114] [ 2340] [depth= 1] . ( 537 sec) [ -13483.0082] [ 2340] [depth= 2] . ( 538 sec) [ -13479.9176] [ 2337] [depth= 1] . ( 540 sec) [ -13478.0811] [ 2341] [depth= 5] . ( 547 sec) [ -13476.8255] [ 2341] [depth= 3] . ( 549 sec) [ -13476.0979] [ 2341] [depth= 1] . ( 551 sec) [ -13475.6762] [ 2341] [depth= 1] . ( 555 sec) [ -13467.4159] [ 2327] [depth= 14] . ( 557 sec) [ -13459.3738] [ 2326] [depth= 5] . ( 561 sec) [ -13458.0041] [ 2325] [depth= 1] . ( 565 sec) [ -13457.9698] [ 2326] [depth= 2] . ( 567 sec) [ -13457.7415] [ 2327] [depth= 1] . ( 570 sec) [ -13457.1557] [ 2324] [depth= 2] . ( 574 sec) [ -13457.1253] [ 2324] [depth= 1] . ( 576 sec) [ -13395.2557] [ 2293] [depth= 3] . ( 578 sec) [ -13382.6530] [ 2287] [depth= 1] . ( 580 sec) [ -13382.6031] [ 2287] [depth= 2] . ( 582 sec) [ -13287.7527] [ 2253] [depth= 14] . ( 585 sec) [ -13280.2403] [ 2252] [depth= 5] . ( 586 sec) [ -13279.7795] [ 2252] [depth= 1] . ( 587 sec) [ -13278.0704] [ 2252] [depth= 1] . ( 589 sec) [ -13277.2175] [ 2252] [depth= 2] . ( 591 sec) [ -13276.8621] [ 2252] [depth= 1] . ( 593 sec) [ -13248.9566] [ 2246] [depth= 4] . ( 594 sec) [ -13248.2114] [ 2246] [depth= 1] . ( 596 sec) [ -13237.7135] [ 2245] [depth= 6] . ( 604 sec) [ -13235.3565] [ 2244] [depth= 1] . ( 606 sec) [ -13233.0306] [ 2243] [depth= 1] . ( 609 sec) [ -13232.8993] [ 2244] [depth= 1] . ( 614 sec) [ -13232.8691] [ 2244] [depth= 1] . ( 623 sec) [ -13229.9688] [ 2245] [depth= 1] . ( 625 sec) [ -13229.8743] [ 2245] [depth= 2] . ( 632 sec) [ -13215.2019] [ 2241] [depth= 2] . ( 633 sec) [ -13210.9242] [ 2240] [depth= 1] . ( 638 sec) [ -13210.7532] [ 2240] [depth= 1] . ( 639 sec) [ -13184.7794] [ 2236] [depth= 7] . ( 642 sec) [ -13181.4931] [ 2238] [depth= 2] . ( 644 sec) [ -13175.4019] [ 2235] [depth= 1] . ( 664 sec) [ -13175.1584] [ 2235] [depth= 1] . ( 666 sec) [ -13175.1368] [ 2235] [depth= 1] . ( 667 sec) [ -13085.6124] [ 2216] [depth= 9] . ( 670 sec) [ -13085.2699] [ 2216] [depth= 1] . ( 671 sec) [ -13072.5583] [ 2214] [depth= 1] . ( 673 sec) [ -13072.1395] [ 2212] [depth= 3] . ( 681 sec) [ -13069.5776] [ 2212] [depth= 2] . ( 703 sec) [ -13068.3479] [ 2212] [depth= 1] . ( 707 sec) [ -13066.2746] [ 2210] [depth= 1] . ( 720 sec) [ -13064.8338] [ 2210] [depth= 2] . ( 727 sec) [ -13058.6068] [ 2209] [depth= 1] . ( 732 sec) [ -13058.0303] [ 2208] [depth= 1] . ( 733 sec) [ -13057.5607] [ 2208] [depth= 1] . ( 740 sec) [ -13036.8532] [ 2201] [depth= 1] . ( 741 sec) [ -13035.2453] [ 2201] [depth= 1] . ( 744 sec) [ -13035.1872] [ 2201] [depth= 4] . ( 748 sec) [ -13034.7052] [ 2201] [depth= 1] . ( 749 sec) [ -13034.5421] [ 2201] [depth= 1] . ( 764 sec) [ -13034.4693] [ 2201] [depth= 1] . ( 767 sec) [ -13033.8119] [ 2201] [depth= 1] . ( 769 sec) [ -13031.4751] [ 2200] [depth= 2] . ( 802 sec) [ -13031.3489] [ 2200] [depth= 2] . ( 813 sec) [ -13030.1878] [ 2201] [depth= 1] . ( 815 sec) [ -13029.6467] [ 2201] [depth= 1] . ( 819 sec) [ -13028.4777] [ 2201] [depth= 1] . ( 821 sec) [ -13027.9816] [ 2201] [depth= 4] . ( 825 sec) [ -13026.9930] [ 2201] [depth= 1] . ( 853 sec) [ -13026.9194] [ 2201] [depth= 2] . ( 854 sec) [ -13026.7552] [ 2201] [depth= 1] . ( 856 sec) [ -13022.4737] [ 2200] [depth= 4] . ( 861 sec) [ -13022.2363] [ 2200] [depth= 4] . ( 864 sec) [ -13022.2223] [ 2200] [depth= 2] . ( 866 sec) [ -13018.7811] [ 2200] [depth= 1] . ( 867 sec) [ -13018.5353] [ 2200] [depth= 1] . ( 879 sec) [ -13018.0867] [ 2200] [depth= 1] . ( 882 sec) [ -13018.0148] [ 2200] [depth= 1] . ( 883 sec) [ -13016.2274] [ 2200] [depth= 2] . ( 885 sec) [ -13016.2127] [ 2200] [depth= 2] . ( 887 sec) [ -13016.1615] [ 2201] [depth= 1] . ( 890 sec) [ -13015.9767] [ 2201] [depth= 1] . ( 902 sec) [ -13015.8770] [ 2200] [depth= 1] . ( 905 sec) [ -13015.6089] [ 2200] [depth= 2] . ( 926 sec) [ -13015.4803] [ 2200] [depth= 1] . ( 947 sec) [ -13014.3108] [ 2199] [depth= 9] . ( 952 sec) [ -13013.9554] [ 2200] [depth= 1] . ( 967 sec) [ -13013.7778] [ 2201] [depth= 1] . ( 969 sec) [ -13009.6733] [ 2199] [depth= 2] . ( 980 sec) [ -12985.1381] [ 2193] [depth= 13] . ( 986 sec) [ -12983.6827] [ 2193] [depth= 3] . ( 992 sec) [ -12983.3813] [ 2193] [depth= 1] . ( 1000 sec) [ -12983.0563] [ 2196] [depth= 1] . ( 1003 sec) [ -12982.0249] [ 2196] [depth= 3] . ( 1004 sec) [ -12981.9941] [ 2196] [depth= 1] . ( 1006 sec) [ -12981.8010] [ 2195] [depth= 1] . ( 1007 sec) [ -12969.7950] [ 2193] [depth= 2] . ( 1011 sec) [ -12968.1709] [ 2193] [depth= 1] . ( 1013 sec) [ -12964.5869] [ 2192] [depth= 3] . ( 1020 sec) [ -12961.0533] [ 2191] [depth= 6] . ( 1022 sec) [ -12958.9437] [ 2189] [depth= 1] . ( 1025 sec) [ -12957.7801] [ 2189] [depth= 2] . ( 1044 sec) [ -12957.0589] [ 2189] [depth= 1] . ( 1046 sec) [ -12955.5711] [ 2188] [depth= 1] . ( 1053 sec) [ -12954.9064] [ 2187] [depth= 2] . ( 1056 sec) [ -12947.0021] [ 2185] [depth= 1] . ( 1070 sec) [ -12945.6082] [ 2183] [depth= 3] . ( 1074 sec) [ -12945.4363] [ 2184] [depth= 4] . ( 1077 sec) [ -12934.0789] [ 2183] [depth= 7] . ( 1078 sec) [ -12932.9669] [ 2183] [depth= 1] . ( 1099 sec) [ -12932.8395] [ 2183] [depth= 1] . ( 1101 sec) [ -12932.1659] [ 2185] [depth= 1] . ( 1103 sec) [ -12931.9006] [ 2185] [depth= 4] . ( 1104 sec) [ -12929.7642] [ 2185] [depth= 2] . ( 1107 sec) [ -12929.4281] [ 2184] [depth= 3] . ( 1113 sec) [ -12928.8058] [ 2184] [depth= 2] . ( 1118 sec) [ -12882.5126] [Branch lengths ] . ( 1120 sec) [ -12882.1243] [Alpha ][ 0.723081] . ( 1160 sec) [ -12881.6779] [ 2184] [depth= 1] . ( 1161 sec) [ -12881.5920] [ 2184] [depth= 1] . ( 1174 sec) [ -12872.4079] [ 2177] [depth= 2] . ( 1373 sec) [ -12872.3072] [ 2177] [depth= 1] . ( 1391 sec) [ -12872.2945] [ 2177] [depth= 2] . ( 1396 sec) [ -12867.0034] [ 2175] [depth= 2] . ( 1467 sec) [ -12866.4800] [ 2175] [depth= 1] . ( 1543 sec) [ -12866.4138] [ 2175] [depth= 1] . ( 1548 sec) [ -12866.3280] [ 2174] [depth= 3] . ( 1557 sec) [ -12866.1823] [ 2175] [depth= 1] . ( 1558 sec) [ -12865.6048] [ 2175] [depth= 1] . ( 1562 sec) [ -12865.5408] [ 2176] [depth= 1] . ( 1583 sec) [ -12864.5596] [ 2176] [depth= 1] . ( 1614 sec) [ -12864.5386] [ 2176] [depth= 2] . ( 1629 sec) [ -12863.0689] [ 2175] [depth= 9] . ( 1641 sec) [ -12862.6343] [ 2175] [depth= 4] . ( 1713 sec) [ -12862.3862] [ 2175] [depth= 2] . ( 1762 sec) [ -12862.2876] [ 2174] [depth= 1] . ( 1786 sec) [ -12861.8255] [ 2174] [depth= 2] . ( 1792 sec) [ -12861.2263] [ 2172] [depth= 1] . ( 1851 sec) [ -12861.0856] [ 2172] [depth= 1] . ( 1867 sec) [ -12861.0207] [ 2171] [depth= 1] . ( 1869 sec) [ -12860.5183] [ 2172] [depth= 1] . ( 1898 sec) [ -12860.1197] [ 2172] [depth= 2] . ( 1935 sec) [ -12860.0400] [ 2172] [depth= 1] . ( 1937 sec) [ -12859.9279] [ 2171] [depth= 4] . ( 1957 sec) [ -12859.5122] [ 2171] [depth= 4] . ( 2016 sec) [ -12859.0744] [ 2171] [depth= 1] . ( 2021 sec) [ -12858.9255] [ 2171] [depth= 1] . ( 2030 sec) [ -12858.7717] [ 2171] [depth= 1] . ( 2035 sec) [ -12851.9999] [Branch lengths ] . ( 2037 sec) [ -12851.9380] [Alpha ][ 0.739073] . ( 2165 sec) [ -12851.9279] [ 2171] [depth= 3] . ( 2272 sec) [ -12851.8664] [ 2171] [depth= 2] . ( 2287 sec) [ -12851.8110] [ 2170] [depth= 1] . ( 2545 sec) [ -12851.6328] [ 2170] [depth= 1] . ( 2547 sec) [ -12850.7297] [ 2170] [depth= 6] . ( 2673 sec) [ -12850.6808] [ 2169] [depth= 1] . ( 2978 sec) [ -12848.9549] [Branch lengths ] . ( 2980 sec) [ -12848.9525] [Alpha ][ 0.742183] . ( 3014 sec) [ -12848.9171] [ 2169] [depth= 1] . ( 3230 sec) [ -12848.8526] [ 2169] [depth= 2] . ( 3367 sec) [ -12848.2613] [ 2167] [depth= 2] . ( 3505 sec) [ -12848.1731] [ 2167] [depth= 2] . ( 3549 sec) [ -12848.1574] [ 2166] [depth= 2] . ( 3726 sec) [ -12847.8951] [ 2168] [depth= 1] . ( 3914 sec) [ -12845.0162] [Branch lengths ] . ( 3917 sec) [ -12845.0162] [Alpha ][ 0.742183] . ( 3928 sec) [ -12844.9740] [ 2168] [depth= 3] . ( 3956 sec) [ -12844.9266] [ 2166] [depth= 1] . ( 4114 sec) [ -12844.9160] [ 2166] [depth= 2] . ( 4137 sec) [ -12844.8919] [ 2166] [depth= 2] . ( 4428 sec) [ -12844.8708] [ 2166] [depth= 2] . ( 4834 sec) [ -12842.7634] [Branch lengths ] . ( 4836 sec) [ -12842.7633] [Alpha ][ 0.742936] . ( 5762 sec) [ -12842.4716] [Branch lengths ] . ( 5763 sec) [ -12842.4716] [Topology ] . ( 5776 sec) [ -12842.4461] [Topology ] . ( 5789 sec) [ -12842.4350] [Topology ] . ( 5802 sec) [ -12842.4011] [Topology ] . ( 5814 sec) [ -12842.3660] [Topology ] . ( 5827 sec) [ -12842.3562] [Topology ] . ( 5840 sec) [ -12842.3527] [Topology ] . ( 5842 sec) [ -12842.3527] [Alpha ][ 0.742936] . ( 5843 sec) [ -12842.3527] [Topology ] . ( 5856 sec) [ -12842.3513] [Topology ] . ( 5868 sec) [ -12842.3506] [Topology ] . ( 5870 sec) [ -12842.3506] [Alpha ][ 0.742936] . ( 5871 sec) [ -12842.3506] [Topology ] . ( 5884 sec) [ -12842.3503] [Topology ] . ( 5886 sec) [ -12842.3503] [Alpha ][ 0.742936] . Checking for NNIs, optimizing five branches... . ( 5979 sec) [ -12842.2691] [Topology ] . Checking for NNIs, optimizing five branches... . ( 6073 sec) [ -12842.2690] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -12842.268954. . [Random start 4/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 4 sec) [ -33414.3291] [Alpha ][ 0.500960] . ( 7 sec) [ -33240.4279] [ 5052] [depth= 10] . ( 8 sec) [ -33136.7121] [ 5033] [depth= 18] . ( 9 sec) [ -32809.3296] [ 5026] [depth= 2] . ( 11 sec) [ -32679.2077] [ 5024] [depth= 1] . ( 12 sec) [ -32392.7725] [ 4933] [depth= 2] . ( 13 sec) [ -32294.3156] [ 4929] [depth= 8] . ( 14 sec) [ -32021.1737] [ 4917] [depth= 3] . ( 15 sec) [ -32005.6814] [ 4914] [depth= 5] . ( 16 sec) [ -31961.6397] [ 4905] [depth= 1] . ( 18 sec) [ -31669.0994] [ 4903] [depth= 8] . ( 19 sec) [ -31606.6824] [ 4900] [depth= 9] . ( 20 sec) [ -31587.9843] [ 4896] [depth= 6] . ( 22 sec) [ -31576.2431] [ 4892] [depth= 6] . ( 23 sec) [ -31144.9610] [ 4802] [depth= 26] . ( 25 sec) [ -31143.2356] [ 4804] [depth= 1] . ( 26 sec) [ -31027.1531] [ 4793] [depth= 12] . ( 27 sec) [ -31011.3133] [ 4791] [depth= 6] . ( 29 sec) [ -30998.2814] [ 4789] [depth= 16] . ( 30 sec) [ -30973.8849] [ 4787] [depth= 11] . ( 31 sec) [ -30954.2500] [ 4785] [depth= 1] . ( 32 sec) [ -30929.1190] [ 4778] [depth= 4] . ( 34 sec) [ -30782.8249] [ 4774] [depth= 12] . ( 35 sec) [ -30685.3233] [ 4765] [depth= 18] . ( 36 sec) [ -30642.8766] [ 4767] [depth= 1] . ( 38 sec) [ -30542.4529] [ 4762] [depth= 1] . ( 38 sec) [ -30525.0239] [ 4761] [depth= 1] . ( 40 sec) [ -30491.4652] [ 4751] [depth= 20] . ( 42 sec) [ -30479.4308] [ 4750] [depth= 21] . ( 43 sec) [ -30426.8233] [ 4742] [depth= 17] . ( 45 sec) [ -30372.2570] [ 4738] [depth= 11] . ( 46 sec) [ -30364.2748] [ 4737] [depth= 18] . ( 48 sec) [ -30115.5202] [ 4728] [depth= 4] . ( 49 sec) [ -30074.9388] [ 4727] [depth= 1] . ( 50 sec) [ -30072.2705] [ 4728] [depth= 1] . ( 52 sec) [ -30068.2224] [ 4712] [depth= 6] . ( 53 sec) [ -29920.9473] [ 4704] [depth= 8] . ( 54 sec) [ -29739.0308] [ 4669] [depth= 14] . ( 56 sec) [ -29594.1189] [ 4653] [depth= 15] . ( 57 sec) [ -29485.0017] [ 4651] [depth= 1] . ( 58 sec) [ -29358.7697] [ 4611] [depth= 13] . ( 59 sec) [ -29276.7786] [ 4610] [depth= 1] . ( 61 sec) [ -29172.0615] [ 4611] [depth= 11] . ( 62 sec) [ -29065.6926] [ 4588] [depth= 17] . ( 64 sec) [ -28973.1302] [ 4574] [depth= 4] . ( 65 sec) [ -28910.7658] [ 4567] [depth= 6] . ( 67 sec) [ -28375.7803] [ 4566] [depth= 16] . ( 68 sec) [ -28151.4190] [ 4529] [depth= 16] . ( 70 sec) [ -27723.7784] [ 4483] [depth= 15] . ( 71 sec) [ -27434.5743] [ 4454] [depth= 1] . ( 73 sec) [ -27387.1358] [ 4448] [depth= 6] . ( 74 sec) [ -27377.9183] [ 4441] [depth= 12] . ( 76 sec) [ -27229.0002] [ 4434] [depth= 12] . ( 77 sec) [ -27219.7933] [ 4434] [depth= 1] . ( 78 sec) [ -27154.6732] [ 4427] [depth= 3] . ( 80 sec) [ -27105.0527] [ 4420] [depth= 14] . ( 81 sec) [ -27092.2538] [ 4416] [depth= 4] . ( 83 sec) [ -26892.8393] [ 4368] [depth= 15] . ( 84 sec) [ -26890.6141] [ 4369] [depth= 1] . ( 85 sec) [ -26792.0016] [ 4340] [depth= 15] . ( 87 sec) [ -26774.8056] [ 4337] [depth= 7] . ( 88 sec) [ -26233.8757] [ 4287] [depth= 10] . ( 90 sec) [ -25708.3860] [ 4260] [depth= 1] . ( 91 sec) [ -25581.5724] [ 4236] [depth= 1] . ( 92 sec) [ -25334.9556] [ 4195] [depth= 11] . ( 94 sec) [ -25230.5387] [ 4170] [depth= 11] . ( 95 sec) [ -25118.0875] [ 4163] [depth= 11] . ( 97 sec) [ -25097.3063] [ 4154] [depth= 6] . ( 98 sec) [ -25093.6996] [ 4155] [depth= 3] . ( 100 sec) [ -24963.1510] [ 4135] [depth= 9] . ( 100 sec) [ -24939.9309] [ 4135] [depth= 1] . ( 102 sec) [ -24880.2124] [ 4123] [depth= 16] . ( 103 sec) [ -24737.4131] [ 4097] [depth= 14] . ( 105 sec) [ -24669.1881] [ 4086] [depth= 11] . ( 106 sec) [ -24547.7084] [ 4057] [depth= 19] . ( 108 sec) [ -24500.8935] [ 4050] [depth= 13] . ( 109 sec) [ -24427.8342] [ 4042] [depth= 7] . ( 111 sec) [ -24323.2666] [ 4023] [depth= 12] . ( 112 sec) [ -24319.7869] [ 4022] [depth= 1] . ( 113 sec) [ -23849.0766] [ 4014] [depth= 12] . ( 115 sec) [ -23807.2054] [ 4003] [depth= 8] . ( 116 sec) [ -23792.3243] [ 4002] [depth= 1] . ( 117 sec) [ -23682.2957] [ 3973] [depth= 19] . ( 118 sec) [ -23644.4019] [ 3972] [depth= 1] . ( 120 sec) [ -23563.8659] [ 3952] [depth= 5] . ( 121 sec) [ -23474.7193] [ 3940] [depth= 21] . ( 123 sec) [ -23425.6303] [ 3927] [depth= 16] . ( 124 sec) [ -23311.7156] [ 3911] [depth= 15] . ( 126 sec) [ -23269.2774] [ 3913] [depth= 18] . ( 127 sec) [ -23256.4343] [ 3914] [depth= 15] . ( 129 sec) [ -23197.3168] [ 3904] [depth= 5] . ( 130 sec) [ -23161.0093] [ 3902] [depth= 1] . ( 131 sec) [ -23149.4519] [ 3879] [depth= 9] . ( 133 sec) [ -23086.8296] [ 3862] [depth= 11] . ( 134 sec) [ -23085.5686] [ 3863] [depth= 13] . ( 137 sec) [ -22894.1264] [ 3828] [depth= 14] . ( 138 sec) [ -22862.5187] [ 3823] [depth= 13] . ( 140 sec) [ -22831.4051] [ 3816] [depth= 13] . ( 141 sec) [ -22829.3483] [ 3814] [depth= 1] . ( 143 sec) [ -22819.6279] [ 3810] [depth= 11] . ( 144 sec) [ -22763.0964] [ 3802] [depth= 12] . ( 146 sec) [ -22761.2724] [ 3802] [depth= 2] . ( 147 sec) [ -22738.6680] [ 3798] [depth= 1] . ( 148 sec) [ -22628.2480] [ 3782] [depth= 12] . ( 150 sec) [ -22626.2991] [ 3783] [depth= 1] . ( 151 sec) [ -22625.0941] [ 3783] [depth= 2] . ( 153 sec) [ -22550.2535] [ 3777] [depth= 9] . ( 154 sec) [ -22509.9796] [ 3766] [depth= 7] . ( 155 sec) [ -22488.2616] [ 3764] [depth= 1] . ( 157 sec) [ -22403.3558] [ 3744] [depth= 1] . ( 158 sec) [ -22364.3697] [ 3738] [depth= 1] . ( 159 sec) [ -22313.3043] [ 3725] [depth= 6] . ( 161 sec) [ -22275.3799] [ 3717] [depth= 7] . ( 162 sec) [ -22231.6865] [ 3717] [depth= 1] . ( 163 sec) [ -22138.5242] [ 3695] [depth= 8] . ( 164 sec) [ -22097.8262] [ 3685] [depth= 1] . ( 166 sec) [ -22063.1769] [ 3679] [depth= 9] . ( 167 sec) [ -21973.2287] [ 3663] [depth= 5] . ( 169 sec) [ -21970.8633] [ 3662] [depth= 1] . ( 171 sec) [ -21842.6941] [ 3630] [depth= 13] . ( 172 sec) [ -21749.9838] [ 3624] [depth= 9] . ( 174 sec) [ -21728.6503] [ 3627] [depth= 1] . ( 174 sec) [ -21724.7819] [ 3627] [depth= 1] . ( 176 sec) [ -21653.4477] [ 3594] [depth= 7] . ( 177 sec) [ -21595.0266] [ 3591] [depth= 1] . ( 178 sec) [ -21340.2798] [ 3541] [depth= 2] . ( 180 sec) [ -21182.6151] [ 3502] [depth= 11] . ( 182 sec) [ -21152.0655] [ 3500] [depth= 12] . ( 184 sec) [ -21058.5434] [ 3477] [depth= 18] . ( 185 sec) [ -21039.0792] [ 3475] [depth= 1] . ( 186 sec) [ -21010.7331] [ 3471] [depth= 10] . ( 188 sec) [ -21005.1194] [ 3474] [depth= 15] . ( 189 sec) [ -20957.1095] [ 3465] [depth= 19] . ( 191 sec) [ -20925.6262] [ 3464] [depth= 1] . ( 193 sec) [ -20887.9387] [ 3455] [depth= 1] . ( 194 sec) [ -20867.0813] [ 3450] [depth= 8] . ( 196 sec) [ -20867.0460] [ 3450] [depth= 1] . ( 197 sec) [ -20864.1194] [ 3448] [depth= 1] . ( 199 sec) [ -20814.2500] [ 3426] [depth= 15] . ( 200 sec) [ -20805.3606] [ 3431] [depth= 1] . ( 201 sec) [ -20794.7448] [ 3426] [depth= 1] . ( 203 sec) [ -20731.7229] [ 3407] [depth= 4] . ( 204 sec) [ -20622.2681] [ 3390] [depth= 12] . ( 206 sec) [ -20600.3586] [ 3387] [depth= 17] . ( 207 sec) [ -20519.3196] [ 3385] [depth= 3] . ( 209 sec) [ -20490.1318] [ 3378] [depth= 17] . ( 210 sec) [ -20433.6517] [ 3377] [depth= 1] . ( 212 sec) [ -20375.6493] [ 3377] [depth= 2] . ( 213 sec) [ -20347.0306] [ 3373] [depth= 1] . ( 214 sec) [ -20343.4218] [ 3373] [depth= 3] . ( 216 sec) [ -20338.3266] [ 3372] [depth= 1] . ( 217 sec) [ -20165.0412] [ 3366] [depth= 4] . ( 218 sec) [ -20122.2481] [ 3360] [depth= 1] . ( 220 sec) [ -20043.3839] [ 3340] [depth= 2] . ( 221 sec) [ -19969.5611] [ 3333] [depth= 3] . ( 222 sec) [ -19937.6316] [ 3331] [depth= 1] . ( 223 sec) [ -19879.9907] [ 3321] [depth= 15] . ( 224 sec) [ -19856.6190] [ 3322] [depth= 1] . ( 226 sec) [ -19776.8062] [ 3313] [depth= 11] . ( 228 sec) [ -19601.5957] [ 3240] [depth= 19] . ( 230 sec) [ -19422.5811] [ 3219] [depth= 20] . ( 231 sec) [ -19263.1882] [ 3222] [depth= 3] . ( 233 sec) [ -18892.4895] [ 3163] [depth= 7] . ( 234 sec) [ -18866.4223] [ 3156] [depth= 19] . ( 235 sec) [ -18846.2416] [ 3156] [depth= 1] . ( 238 sec) [ -18757.1515] [ 3122] [depth= 21] . ( 239 sec) [ -18378.5686] [ 3048] [depth= 4] . ( 241 sec) [ -18308.8577] [ 3048] [depth= 11] . ( 242 sec) [ -18285.7247] [ 3060] [depth= 1] . ( 244 sec) [ -18222.4870] [ 3051] [depth= 15] . ( 245 sec) [ -18191.9411] [ 3045] [depth= 10] . ( 247 sec) [ -18188.5837] [ 3045] [depth= 1] . ( 248 sec) [ -18181.7499] [ 3045] [depth= 2] . ( 250 sec) [ -18128.8963] [ 3031] [depth= 22] . ( 251 sec) [ -18123.3804] [ 3030] [depth= 2] . ( 252 sec) [ -18100.3858] [ 3026] [depth= 11] . ( 254 sec) [ -18092.0280] [ 3026] [depth= 2] . ( 256 sec) [ -18076.6776] [ 3024] [depth= 1] . ( 258 sec) [ -18075.6164] [ 3024] [depth= 3] . ( 259 sec) [ -18055.5266] [ 3020] [depth= 1] . ( 260 sec) [ -18054.8044] [ 3021] [depth= 2] . ( 262 sec) [ -18054.6011] [ 3021] [depth= 2] . ( 264 sec) [ -18025.8326] [ 3008] [depth= 5] . ( 265 sec) [ -17994.6951] [ 3008] [depth= 1] . ( 267 sec) [ -17912.8597] [ 3001] [depth= 3] . ( 268 sec) [ -17789.6665] [ 2972] [depth= 14] . ( 270 sec) [ -17745.3020] [ 2962] [depth= 8] . ( 271 sec) [ -17547.6151] [ 2955] [depth= 1] . ( 273 sec) [ -17423.5993] [ 2923] [depth= 15] . ( 274 sec) [ -17416.8010] [ 2922] [depth= 1] . ( 275 sec) [ -17375.5835] [ 2916] [depth= 1] . ( 276 sec) [ -17343.9312] [ 2896] [depth= 2] . ( 277 sec) [ -17341.3845] [ 2894] [depth= 3] . ( 279 sec) [ -17312.7706] [ 2892] [depth= 2] . ( 280 sec) [ -17308.8245] [ 2890] [depth= 6] . ( 281 sec) [ -17253.4988] [ 2890] [depth= 1] . ( 283 sec) [ -17244.3237] [ 2889] [depth= 3] . ( 284 sec) [ -17240.8000] [ 2891] [depth= 1] . ( 285 sec) [ -17232.2380] [ 2886] [depth= 3] . ( 287 sec) [ -17203.0338] [ 2889] [depth= 2] . ( 287 sec) [ -17117.0696] [ 2890] [depth= 1] . ( 289 sec) [ -17093.1921] [ 2883] [depth= 4] . ( 292 sec) [ -17091.8603] [ 2885] [depth= 1] . ( 293 sec) [ -17081.8089] [ 2883] [depth= 1] . ( 296 sec) [ -17051.4704] [ 2874] [depth= 20] . ( 297 sec) [ -17049.8208] [ 2874] [depth= 1] . ( 299 sec) [ -17033.4643] [ 2867] [depth= 12] . ( 300 sec) [ -16986.5837] [ 2857] [depth= 4] . ( 302 sec) [ -16933.2924] [ 2845] [depth= 1] . ( 306 sec) [ -16932.9887] [ 2845] [depth= 1] . ( 308 sec) [ -16888.0489] [ 2839] [depth= 9] . ( 310 sec) [ -16887.0764] [ 2839] [depth= 3] . ( 311 sec) [ -16884.2662] [ 2837] [depth= 1] . ( 313 sec) [ -16883.2455] [ 2837] [depth= 1] . ( 315 sec) [ -16821.1666] [ 2821] [depth= 23] . ( 316 sec) [ -16795.8969] [ 2817] [depth= 18] . ( 318 sec) [ -16757.3282] [ 2807] [depth= 16] . ( 319 sec) [ -16687.2833] [ 2788] [depth= 12] . ( 321 sec) [ -16678.0323] [ 2783] [depth= 5] . ( 324 sec) [ -16671.9064] [ 2775] [depth= 13] . ( 326 sec) [ -16671.5452] [ 2775] [depth= 12] . ( 327 sec) [ -16659.5278] [ 2773] [depth= 12] . ( 329 sec) [ -16645.4646] [ 2771] [depth= 3] . ( 330 sec) [ -16639.1607] [ 2769] [depth= 2] . ( 331 sec) [ -16621.7427] [ 2762] [depth= 1] . ( 333 sec) [ -16600.7020] [ 2756] [depth= 4] . ( 334 sec) [ -16587.9067] [ 2756] [depth= 9] . ( 335 sec) [ -16565.3169] [ 2750] [depth= 12] . ( 337 sec) [ -16500.1304] [ 2741] [depth= 3] . ( 338 sec) [ -16481.0447] [ 2735] [depth= 6] . ( 345 sec) [ -16446.7355] [ 2734] [depth= 2] . ( 346 sec) [ -16435.4783] [ 2734] [depth= 2] . ( 347 sec) [ -16433.6701] [ 2734] [depth= 1] . ( 348 sec) [ -16402.0875] [ 2729] [depth= 10] . ( 351 sec) [ -16363.8516] [ 2720] [depth= 8] . ( 352 sec) [ -16358.5924] [ 2719] [depth= 1] . ( 353 sec) [ -16336.0750] [ 2718] [depth= 1] . ( 355 sec) [ -16316.7105] [ 2715] [depth= 1] . ( 356 sec) [ -16293.3150] [ 2702] [depth= 5] . ( 358 sec) [ -16292.4634] [ 2703] [depth= 1] . ( 359 sec) [ -16274.1173] [ 2703] [depth= 1] . ( 361 sec) [ -16273.8419] [ 2704] [depth= 2] . ( 362 sec) [ -16262.8892] [ 2705] [depth= 1] . ( 363 sec) [ -16255.3994] [ 2707] [depth= 1] . ( 365 sec) [ -16255.2396] [ 2707] [depth= 1] . ( 366 sec) [ -16246.5499] [ 2706] [depth= 1] . ( 368 sec) [ -16243.7364] [ 2706] [depth= 4] . ( 369 sec) [ -16228.7752] [ 2703] [depth= 1] . ( 370 sec) [ -16136.7160] [ 2680] [depth= 3] . ( 372 sec) [ -16098.7391] [ 2672] [depth= 10] . ( 378 sec) [ -16034.6484] [ 2650] [depth= 10] . ( 380 sec) [ -16017.8558] [ 2646] [depth= 1] . ( 383 sec) [ -16008.3474] [ 2644] [depth= 1] . ( 385 sec) [ -15987.8668] [ 2644] [depth= 4] . ( 386 sec) [ -15969.0982] [ 2643] [depth= 1] . ( 387 sec) [ -15950.8743] [ 2643] [depth= 1] . ( 388 sec) [ -15943.8181] [ 2642] [depth= 1] . ( 390 sec) [ -15922.9848] [ 2641] [depth= 11] . ( 394 sec) [ -15894.2666] [ 2635] [depth= 8] . ( 395 sec) [ -15850.4997] [ 2627] [depth= 13] . ( 397 sec) [ -15847.6398] [ 2626] [depth= 2] . ( 398 sec) [ -15845.5107] [ 2626] [depth= 1] . ( 400 sec) [ -15844.0160] [ 2626] [depth= 1] . ( 402 sec) [ -15832.8337] [ 2625] [depth= 6] . ( 403 sec) [ -15810.4001] [ 2619] [depth= 7] . ( 405 sec) [ -15803.0546] [ 2617] [depth= 3] . ( 407 sec) [ -15795.1958] [ 2617] [depth= 4] . ( 408 sec) [ -15793.5067] [ 2616] [depth= 5] . ( 410 sec) [ -15771.0725] [ 2611] [depth= 3] . ( 411 sec) [ -15766.8066] [ 2611] [depth= 1] . ( 413 sec) [ -15765.1424] [ 2611] [depth= 1] . ( 416 sec) [ -15764.6352] [ 2611] [depth= 1] . ( 417 sec) [ -15764.3930] [ 2611] [depth= 2] . ( 420 sec) [ -15048.9976] [ 2506] [depth= 7] . ( 421 sec) [ -15048.2751] [ 2507] [depth= 1] . ( 422 sec) [ -14992.5912] [ 2497] [depth= 6] . ( 423 sec) [ -14989.8256] [ 2497] [depth= 1] . ( 428 sec) [ -14989.5646] [ 2497] [depth= 1] . ( 431 sec) [ -14980.8104] [ 2495] [depth= 3] . ( 432 sec) [ -14969.4714] [ 2491] [depth= 12] . ( 434 sec) [ -14969.3019] [ 2491] [depth= 1] . ( 435 sec) [ -14814.2799] [ 2472] [depth= 8] . ( 437 sec) [ -14788.8898] [ 2466] [depth= 2] . ( 438 sec) [ -14751.6417] [ 2453] [depth= 8] . ( 440 sec) [ -14440.1864] [ 2443] [depth= 9] . ( 442 sec) [ -14434.9928] [ 2443] [depth= 7] . ( 443 sec) [ -14418.7813] [ 2447] [depth= 5] . ( 444 sec) [ -14257.6446] [ 2447] [depth= 1] . ( 446 sec) [ -14251.2493] [ 2446] [depth= 1] . ( 447 sec) [ -14239.1981] [ 2446] [depth= 1] . ( 449 sec) [ -14211.7253] [ 2428] [depth= 1] . ( 450 sec) [ -14201.4785] [ 2427] [depth= 5] . ( 451 sec) [ -14192.2656] [ 2423] [depth= 3] . ( 455 sec) [ -14185.1612] [ 2424] [depth= 2] . ( 456 sec) [ -14183.7873] [ 2423] [depth= 1] . ( 458 sec) [ -14183.7641] [ 2423] [depth= 1] . ( 459 sec) [ -14148.4682] [ 2423] [depth= 1] . ( 462 sec) [ -14033.8940] [ 2392] [depth= 8] . ( 463 sec) [ -14026.7459] [ 2389] [depth= 1] . ( 464 sec) [ -13998.4288] [ 2387] [depth= 3] . ( 466 sec) [ -13997.2927] [ 2391] [depth= 1] . ( 467 sec) [ -13993.8022] [ 2385] [depth= 4] . ( 468 sec) [ -13991.2850] [ 2384] [depth= 1] . ( 470 sec) [ -13987.5677] [ 2384] [depth= 2] . ( 471 sec) [ -13983.3559] [ 2384] [depth= 2] . ( 473 sec) [ -13967.7787] [ 2384] [depth= 1] . ( 474 sec) [ -13960.5144] [ 2377] [depth= 3] . ( 475 sec) [ -13934.9696] [ 2367] [depth= 4] . ( 481 sec) [ -13927.5863] [ 2366] [depth= 5] . ( 482 sec) [ -13920.6197] [ 2365] [depth= 1] . ( 483 sec) [ -13920.1423] [ 2365] [depth= 2] . ( 485 sec) [ -13902.7697] [ 2365] [depth= 8] . ( 486 sec) [ -13896.8366] [ 2365] [depth= 5] . ( 488 sec) [ -13895.6103] [ 2365] [depth= 3] . ( 490 sec) [ -13895.3555] [ 2365] [depth= 1] . ( 492 sec) [ -13892.9928] [ 2364] [depth= 1] . ( 493 sec) [ -13874.8952] [ 2361] [depth= 10] . ( 495 sec) [ -13874.8034] [ 2361] [depth= 1] . ( 496 sec) [ -13872.8011] [ 2360] [depth= 1] . ( 498 sec) [ -13871.2462] [ 2359] [depth= 1] . ( 499 sec) [ -13868.0458] [ 2359] [depth= 1] . ( 505 sec) [ -13587.7801] [Branch lengths ] . ( 507 sec) [ -13578.8949] [Alpha ][ 0.645637] . ( 511 sec) [ -13578.8812] [ 2359] [depth= 1] . ( 513 sec) [ -13558.6409] [ 2356] [depth= 6] . ( 514 sec) [ -13556.5273] [ 2358] [depth= 1] . ( 516 sec) [ -13543.8165] [ 2355] [depth= 8] . ( 518 sec) [ -13541.8838] [ 2354] [depth= 2] . ( 519 sec) [ -13541.5463] [ 2353] [depth= 2] . ( 523 sec) [ -13541.0747] [ 2353] [depth= 1] . ( 526 sec) [ -13519.0607] [ 2345] [depth= 2] . ( 528 sec) [ -13509.2609] [ 2340] [depth= 3] . ( 537 sec) [ -13509.0828] [ 2341] [depth= 1] . ( 540 sec) [ -13508.6684] [ 2341] [depth= 1] . ( 545 sec) [ -13478.8718] [ 2328] [depth= 10] . ( 547 sec) [ -13478.2821] [ 2328] [depth= 2] . ( 562 sec) [ -13477.0266] [ 2328] [depth= 2] . ( 564 sec) [ -13470.3815] [ 2327] [depth= 3] . ( 576 sec) [ -13465.5263] [ 2325] [depth= 3] . ( 578 sec) [ -13464.5006] [ 2323] [depth= 3] . ( 579 sec) [ -13463.7994] [ 2323] [depth= 2] . ( 582 sec) [ -13463.6984] [ 2323] [depth= 2] . ( 591 sec) [ -13463.6085] [ 2322] [depth= 3] . ( 595 sec) [ -13462.2362] [ 2323] [depth= 1] . ( 596 sec) [ -13456.3903] [ 2319] [depth= 1] . ( 599 sec) [ -13456.2776] [ 2319] [depth= 3] . ( 600 sec) [ -13455.9175] [ 2319] [depth= 1] . ( 601 sec) [ -13455.9031] [ 2319] [depth= 1] . ( 604 sec) [ -13455.8689] [ 2319] [depth= 1] . ( 637 sec) [ -13455.7303] [ 2318] [depth= 3] . ( 639 sec) [ -13444.6734] [ 2316] [depth= 2] . ( 641 sec) [ -13439.3819] [ 2314] [depth= 1] . ( 643 sec) [ -13439.3317] [ 2314] [depth= 1] . ( 644 sec) [ -13425.3393] [ 2311] [depth= 19] . ( 647 sec) [ -13396.3093] [ 2301] [depth= 2] . ( 648 sec) [ -13395.2576] [ 2301] [depth= 1] . ( 652 sec) [ -13394.8984] [ 2301] [depth= 1] . ( 655 sec) [ -13394.8857] [ 2301] [depth= 1] . ( 657 sec) [ -13393.1108] [ 2302] [depth= 1] . ( 659 sec) [ -13392.8857] [ 2302] [depth= 1] . ( 669 sec) [ -13383.6848] [ 2301] [depth= 6] . ( 672 sec) [ -13352.1466] [ 2289] [depth= 10] . ( 674 sec) [ -13349.1621] [ 2288] [depth= 1] . ( 677 sec) [ -13347.3517] [ 2287] [depth= 2] . ( 678 sec) [ -13305.6553] [ 2276] [depth= 4] . ( 682 sec) [ -13305.6299] [ 2276] [depth= 1] . ( 683 sec) [ -13304.9491] [ 2277] [depth= 1] . ( 689 sec) [ -13303.8281] [ 2275] [depth= 3] . ( 696 sec) [ -13303.5368] [ 2275] [depth= 1] . ( 702 sec) [ -13303.3446] [ 2275] [depth= 1] . ( 703 sec) [ -13302.6007] [ 2275] [depth= 1] . ( 717 sec) [ -13291.5695] [ 2273] [depth= 3] . ( 723 sec) [ -13287.3103] [ 2272] [depth= 3] . ( 729 sec) [ -13284.6925] [ 2272] [depth= 1] . ( 733 sec) [ -13283.8317] [ 2271] [depth= 1] . ( 735 sec) [ -13279.5235] [ 2270] [depth= 2] . ( 737 sec) [ -13279.3564] [ 2270] [depth= 3] . ( 738 sec) [ -13272.1712] [ 2269] [depth= 1] . ( 741 sec) [ -13272.1258] [ 2269] [depth= 1] . ( 742 sec) [ -13271.7616] [ 2267] [depth= 1] . ( 744 sec) [ -13271.0698] [ 2264] [depth= 1] . ( 749 sec) [ -13267.6317] [ 2260] [depth= 1] . ( 751 sec) [ -13267.1343] [ 2260] [depth= 1] . ( 752 sec) [ -13264.6579] [ 2259] [depth= 3] . ( 755 sec) [ -13260.8592] [ 2260] [depth= 1] . ( 756 sec) [ -13260.4973] [ 2260] [depth= 1] . ( 766 sec) [ -13260.2107] [ 2260] [depth= 3] . ( 771 sec) [ -13260.1478] [ 2260] [depth= 2] . ( 772 sec) [ -13256.8381] [ 2260] [depth= 1] . ( 773 sec) [ -13223.8248] [ 2255] [depth= 8] . ( 778 sec) [ -13223.6379] [ 2255] [depth= 1] . ( 779 sec) [ -13223.4564] [ 2255] [depth= 1] . ( 783 sec) [ -13222.7124] [ 2255] [depth= 1] . ( 785 sec) [ -13221.0297] [ 2255] [depth= 1] . ( 800 sec) [ -13205.8060] [ 2225] [depth= 12] . ( 816 sec) [ -13205.1863] [ 2225] [depth= 1] . ( 818 sec) [ -13205.1681] [ 2225] [depth= 1] . ( 820 sec) [ -13203.7164] [ 2226] [depth= 1] . ( 825 sec) [ -13203.7028] [ 2226] [depth= 1] . ( 827 sec) [ -13202.9033] [ 2225] [depth= 3] . ( 829 sec) [ -13202.4876] [ 2226] [depth= 1] . ( 830 sec) [ -13201.9611] [ 2225] [depth= 1] . ( 832 sec) [ -13201.7580] [ 2225] [depth= 1] . ( 833 sec) [ -13187.6274] [ 2221] [depth= 9] . ( 835 sec) [ -13076.9437] [ 2217] [depth= 1] . ( 836 sec) [ -13045.1625] [ 2206] [depth= 3] . ( 838 sec) [ -13041.3288] [ 2208] [depth= 2] . ( 839 sec) [ -13039.4001] [ 2212] [depth= 2] . ( 840 sec) [ -13035.5067] [ 2205] [depth= 5] . ( 841 sec) [ -13033.2320] [ 2204] [depth= 1] . ( 843 sec) [ -13032.0552] [ 2205] [depth= 1] . ( 852 sec) [ -13018.3602] [ 2203] [depth= 5] . ( 855 sec) [ -13018.1618] [ 2204] [depth= 1] . ( 866 sec) [ -13008.8363] [ 2200] [depth= 5] . ( 871 sec) [ -13008.6680] [ 2200] [depth= 1] . ( 874 sec) [ -13008.6467] [ 2200] [depth= 1] . ( 876 sec) [ -13008.4548] [ 2200] [depth= 1] . ( 880 sec) [ -13006.0719] [ 2199] [depth= 1] . ( 881 sec) [ -12964.4784] [ 2190] [depth= 9] . ( 883 sec) [ -12964.4466] [ 2190] [depth= 2] . ( 885 sec) [ -12963.6409] [ 2190] [depth= 1] . ( 887 sec) [ -12962.7075] [ 2190] [depth= 1] . ( 899 sec) [ -12960.4960] [ 2188] [depth= 3] . ( 907 sec) [ -12959.3679] [ 2186] [depth= 3] . ( 909 sec) [ -12959.1901] [ 2183] [depth= 2] . ( 912 sec) [ -12959.0754] [ 2184] [depth= 3] . ( 917 sec) [ -12955.8323] [ 2183] [depth= 1] . ( 930 sec) [ -12948.5465] [ 2180] [depth= 2] . ( 932 sec) [ -12947.8533] [ 2180] [depth= 1] . ( 938 sec) [ -12947.3432] [ 2180] [depth= 1] . ( 940 sec) [ -12938.6811] [ 2180] [depth= 2] . ( 942 sec) [ -12938.4626] [ 2179] [depth= 1] . ( 943 sec) [ -12938.3762] [ 2179] [depth= 1] . ( 946 sec) [ -12938.3309] [ 2179] [depth= 4] . ( 948 sec) [ -12936.6439] [ 2178] [depth= 1] . ( 960 sec) [ -12936.5228] [ 2178] [depth= 1] . ( 973 sec) [ -12935.1315] [ 2178] [depth= 2] . ( 975 sec) [ -12931.2976] [ 2178] [depth= 1] . ( 991 sec) [ -12931.1642] [ 2178] [depth= 1] . ( 995 sec) [ -12929.4093] [ 2177] [depth= 2] . ( 999 sec) [ -12928.1763] [ 2177] [depth= 2] . ( 1004 sec) [ -12928.1363] [ 2177] [depth= 2] . ( 1005 sec) [ -12928.1214] [ 2177] [depth= 1] . ( 1006 sec) [ -12928.0274] [ 2177] [depth= 1] . ( 1044 sec) [ -12927.7245] [ 2177] [depth= 1] . ( 1045 sec) [ -12926.0233] [ 2176] [depth= 4] . ( 1050 sec) [ -12925.3460] [ 2184] [depth= 1] . ( 1066 sec) [ -12925.3202] [ 2185] [depth= 2] . ( 1068 sec) [ -12923.2189] [ 2185] [depth= 2] . ( 1070 sec) [ -12922.8903] [ 2189] [depth= 1] . ( 1078 sec) [ -12917.7285] [ 2188] [depth= 1] . ( 1084 sec) [ -12916.1552] [ 2187] [depth= 2] . ( 1091 sec) [ -12916.1409] [ 2187] [depth= 1] . ( 1094 sec) [ -12914.3970] [ 2186] [depth= 2] . ( 1096 sec) [ -12913.6543] [ 2186] [depth= 2] . ( 1100 sec) [ -12913.5445] [ 2185] [depth= 2] . ( 1104 sec) [ -12913.0655] [ 2185] [depth= 2] . ( 1106 sec) [ -12912.8564] [ 2186] [depth= 2] . ( 1115 sec) [ -12886.5349] [Branch lengths ] . ( 1117 sec) [ -12885.3889] [Alpha ][ 0.709468] . ( 1127 sec) [ -12883.5254] [ 2191] [depth= 1] . ( 1145 sec) [ -12883.4313] [ 2191] [depth= 1] . ( 1147 sec) [ -12880.8695] [ 2189] [depth= 5] . ( 1150 sec) [ -12880.7525] [ 2190] [depth= 2] . ( 1158 sec) [ -12880.5856] [ 2190] [depth= 1] . ( 1160 sec) [ -12880.5462] [ 2190] [depth= 3] . ( 1175 sec) [ -12880.4386] [ 2189] [depth= 1] . ( 1177 sec) [ -12878.5084] [ 2189] [depth= 2] . ( 1179 sec) [ -12878.1064] [ 2189] [depth= 1] . ( 1185 sec) [ -12876.9896] [ 2185] [depth= 1] . ( 1187 sec) [ -12875.8585] [ 2184] [depth= 2] . ( 1190 sec) [ -12875.7893] [ 2184] [depth= 2] . ( 1199 sec) [ -12874.9826] [ 2184] [depth= 1] . ( 1205 sec) [ -12873.5420] [ 2184] [depth= 11] . ( 1221 sec) [ -12873.5161] [ 2184] [depth= 1] . ( 1246 sec) [ -12873.4326] [ 2184] [depth= 1] . ( 1247 sec) [ -12872.0980] [ 2185] [depth= 1] . ( 1296 sec) [ -12872.0098] [ 2185] [depth= 2] . ( 1308 sec) [ -12871.9857] [ 2175] [depth= 1] . ( 1328 sec) [ -12871.3229] [ 2174] [depth= 1] . ( 1331 sec) [ -12870.8749] [ 2174] [depth= 1] . ( 1332 sec) [ -12868.8374] [ 2173] [depth= 1] . ( 1342 sec) [ -12868.4525] [ 2172] [depth= 2] . ( 1373 sec) [ -12867.6731] [ 2172] [depth= 2] . ( 1406 sec) [ -12867.6503] [ 2172] [depth= 1] . ( 1437 sec) [ -12867.6201] [ 2172] [depth= 1] . ( 1535 sec) [ -12866.3519] [ 2172] [depth= 10] . ( 1548 sec) [ -12865.3954] [ 2172] [depth= 1] . ( 1599 sec) [ -12865.3453] [ 2172] [depth= 1] . ( 1621 sec) [ -12864.9640] [ 2172] [depth= 2] . ( 1630 sec) [ -12864.7717] [ 2172] [depth= 1] . ( 1634 sec) [ -12864.3968] [ 2172] [depth= 1] . ( 1641 sec) [ -12864.3093] [ 2172] [depth= 1] . ( 1648 sec) [ -12864.1523] [ 2172] [depth= 1] . ( 1707 sec) [ -12864.1264] [ 2172] [depth= 1] . ( 1728 sec) [ -12863.8264] [ 2171] [depth= 3] . ( 1788 sec) [ -12863.5272] [ 2171] [depth= 1] . ( 1809 sec) [ -12863.4656] [ 2171] [depth= 2] . ( 1818 sec) [ -12863.4380] [ 2171] [depth= 1] . ( 1822 sec) [ -12863.2101] [ 2171] [depth= 5] . ( 1829 sec) [ -12862.9293] [ 2172] [depth= 2] . ( 1837 sec) [ -12862.4477] [ 2173] [depth= 1] . ( 1872 sec) [ -12854.4716] [Branch lengths ] . ( 1874 sec) [ -12854.4306] [Alpha ][ 0.722423] . ( 1964 sec) [ -12854.4122] [ 2173] [depth= 1] . ( 2075 sec) [ -12854.4015] [ 2173] [depth= 1] . ( 2143 sec) [ -12854.3504] [ 2173] [depth= 2] . ( 2348 sec) [ -12854.3356] [ 2173] [depth= 1] . ( 2791 sec) [ -12853.6487] [ 2172] [depth= 1] . ( 2826 sec) [ -12852.6369] [Branch lengths ] . ( 2828 sec) [ -12852.6362] [Alpha ][ 0.724067] . ( 3807 sec) [ -12851.2376] [Branch lengths ] . ( 3808 sec) [ -12851.2376] [Topology ] . ( 3821 sec) [ -12849.7366] [Topology ] . ( 3834 sec) [ -12848.9805] [Topology ] . ( 3846 sec) [ -12848.5577] [Topology ] . ( 3859 sec) [ -12848.2891] [Topology ] . ( 3872 sec) [ -12848.1205] [Topology ] . ( 3885 sec) [ -12848.0113] [Topology ] . ( 3887 sec) [ -12848.0023] [Alpha ][ 0.730091] . ( 3888 sec) [ -12848.0023] [Topology ] . ( 3901 sec) [ -12847.9303] [Topology ] . ( 3914 sec) [ -12847.8829] [Topology ] . ( 3926 sec) [ -12847.8515] [Topology ] . ( 3939 sec) [ -12847.8303] [Topology ] . ( 3952 sec) [ -12847.8159] [Topology ] . ( 3965 sec) [ -12847.8057] [Topology ] . ( 3967 sec) [ -12847.8057] [Alpha ][ 0.730821] . ( 3968 sec) [ -12847.8057] [Topology ] . ( 3981 sec) [ -12847.7982] [Topology ] . ( 3994 sec) [ -12847.7927] [Topology ] . ( 4007 sec) [ -12847.7883] [Topology ] . ( 4020 sec) [ -12847.7847] [Topology ] . ( 4032 sec) [ -12847.7816] [Topology ] . ( 4045 sec) [ -12847.7788] [Topology ] . ( 4047 sec) [ -12847.7788] [Alpha ][ 0.730821] . ( 4048 sec) [ -12847.7788] [Topology ] . ( 4061 sec) [ -12847.7763] [Topology ] . ( 4074 sec) [ -12847.7739] [Topology ] . ( 4087 sec) [ -12847.7717] [Topology ] . ( 4100 sec) [ -12847.7695] [Topology ] . ( 4113 sec) [ -12847.7675] [Topology ] . ( 4125 sec) [ -12847.7655] [Topology ] . ( 4127 sec) [ -12847.7655] [Alpha ][ 0.730821] . ( 4128 sec) [ -12847.7655] [Topology ] . ( 4141 sec) [ -12847.7637] [Topology ] . ( 4154 sec) [ -12847.7622] [Topology ] . ( 4166 sec) [ -12847.7610] [Topology ] . ( 4179 sec) [ -12847.7605] [Topology ] . ( 4181 sec) [ -12847.7605] [Alpha ][ 0.730821] . ( 4182 sec) [ -12847.7605] [Topology ] . ( 4195 sec) [ -12847.7605] [Topology ] . ( 4197 sec) [ -12847.7605] [Alpha ][ 0.730821] . Checking for NNIs, optimizing five branches... . ( 4292 sec) [ -12847.7455] [Topology ] . Checking for NNIs, optimizing five branches... . ( 4388 sec) [ -12847.7452] [Topology ] . Checking for NNIs, optimizing five branches... . ( 4482 sec) [ -12847.7450] [Topology ] . Checking for NNIs, optimizing five branches... . ( 4577 sec) [ -12847.7449] [Topology ] . Checking for NNIs, optimizing five branches... . ( 4673 sec) [ -12847.7024] [Topology ] . Checking for NNIs, optimizing five branches... . ( 4768 sec) [ -12847.7003] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -12847.700338. . [Random start 5/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 5 sec) [ -34042.2785] [Alpha ][ 0.500960] . ( 8 sec) [ -33503.7066] [ 5125] [depth= 15] . ( 9 sec) [ -32581.1867] [ 5113] [depth= 17] . ( 10 sec) [ -32510.8910] [ 5112] [depth= 3] . ( 12 sec) [ -32492.5277] [ 5111] [depth= 1] . ( 13 sec) [ -32471.1131] [ 5097] [depth= 8] . ( 14 sec) [ -32408.8102] [ 5094] [depth= 10] . ( 15 sec) [ -32287.9211] [ 5087] [depth= 2] . ( 16 sec) [ -32255.4937] [ 5085] [depth= 7] . ( 17 sec) [ -32254.3054] [ 5083] [depth= 1] . ( 19 sec) [ -32155.0087] [ 5083] [depth= 3] . ( 20 sec) [ -32054.5610] [ 5079] [depth= 3] . ( 21 sec) [ -32030.2857] [ 5074] [depth= 8] . ( 22 sec) [ -31959.8981] [ 5060] [depth= 5] . ( 24 sec) [ -31951.1619] [ 5056] [depth= 5] . ( 25 sec) [ -31927.6919] [ 5054] [depth= 2] . ( 26 sec) [ -31921.3730] [ 5053] [depth= 1] . ( 28 sec) [ -31900.8367] [ 5045] [depth= 4] . ( 29 sec) [ -31898.1035] [ 5042] [depth= 9] . ( 31 sec) [ -31878.2477] [ 5030] [depth= 8] . ( 32 sec) [ -31700.7255] [ 5020] [depth= 11] . ( 34 sec) [ -31546.7222] [ 5006] [depth= 14] . ( 35 sec) [ -31545.5702] [ 5004] [depth= 5] . ( 37 sec) [ -31257.2580] [ 5002] [depth= 3] . ( 38 sec) [ -31225.1778] [ 5000] [depth= 11] . ( 39 sec) [ -31215.0995] [ 5000] [depth= 1] . ( 41 sec) [ -31134.8926] [ 4994] [depth= 11] . ( 42 sec) [ -31109.4819] [ 4994] [depth= 9] . ( 43 sec) [ -30872.3494] [ 4984] [depth= 8] . ( 45 sec) [ -30231.2158] [ 4893] [depth= 16] . ( 46 sec) [ -30222.7956] [ 4898] [depth= 24] . ( 48 sec) [ -30153.0557] [ 4888] [depth= 10] . ( 50 sec) [ -30141.5488] [ 4887] [depth= 7] . ( 51 sec) [ -30140.3613] [ 4887] [depth= 25] . ( 53 sec) [ -29931.7296] [ 4881] [depth= 4] . ( 54 sec) [ -29916.9862] [ 4878] [depth= 11] . ( 56 sec) [ -29901.2447] [ 4871] [depth= 17] . ( 57 sec) [ -29881.0717] [ 4870] [depth= 4] . ( 58 sec) [ -29818.2678] [ 4862] [depth= 21] . ( 60 sec) [ -29742.3797] [ 4855] [depth= 30] . ( 61 sec) [ -29582.0014] [ 4817] [depth= 24] . ( 63 sec) [ -29559.2357] [ 4815] [depth= 22] . ( 64 sec) [ -29493.2909] [ 4740] [depth= 12] . ( 65 sec) [ -29490.0622] [ 4738] [depth= 6] . ( 67 sec) [ -29411.3506] [ 4726] [depth= 5] . ( 68 sec) [ -29377.2490] [ 4721] [depth= 23] . ( 69 sec) [ -29348.9424] [ 4719] [depth= 9] . ( 71 sec) [ -29322.6268] [ 4713] [depth= 5] . ( 72 sec) [ -29291.5212] [ 4713] [depth= 8] . ( 73 sec) [ -29265.0648] [ 4708] [depth= 19] . ( 75 sec) [ -29206.7069] [ 4698] [depth= 7] . ( 76 sec) [ -29178.2815] [ 4689] [depth= 1] . ( 78 sec) [ -29149.8207] [ 4683] [depth= 19] . ( 79 sec) [ -29142.9429] [ 4685] [depth= 21] . ( 81 sec) [ -29122.6788] [ 4685] [depth= 1] . ( 82 sec) [ -28911.0600] [ 4687] [depth= 1] . ( 83 sec) [ -28887.3552] [ 4682] [depth= 19] . ( 85 sec) [ -28507.7956] [ 4670] [depth= 16] . ( 86 sec) [ -28479.1597] [ 4668] [depth= 1] . ( 87 sec) [ -28413.2450] [ 4651] [depth= 8] . 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( 277 sec) [ -19173.3487] [ 3312] [depth= 8] . ( 278 sec) [ -19149.4318] [ 3306] [depth= 9] . ( 280 sec) [ -19123.6888] [ 3302] [depth= 12] . ( 281 sec) [ -19118.9069] [ 3299] [depth= 1] . ( 282 sec) [ -19090.4282] [ 3297] [depth= 3] . ( 284 sec) [ -18850.8667] [ 3293] [depth= 11] . ( 285 sec) [ -18685.4471] [ 3295] [depth= 1] . ( 286 sec) [ -18503.9513] [ 3248] [depth= 17] . ( 288 sec) [ -18392.6318] [ 3230] [depth= 10] . ( 289 sec) [ -18229.8172] [ 3186] [depth= 11] . ( 290 sec) [ -18224.3177] [ 3186] [depth= 1] . ( 294 sec) [ -18197.9660] [ 3178] [depth= 7] . ( 296 sec) [ -17883.6882] [ 3157] [depth= 7] . ( 297 sec) [ -17719.3490] [ 3127] [depth= 10] . ( 299 sec) [ -17683.1430] [ 3121] [depth= 7] . ( 301 sec) [ -17680.7894] [ 3121] [depth= 1] . ( 302 sec) [ -17513.6320] [ 3076] [depth= 15] . ( 305 sec) [ -17490.6692] [ 3073] [depth= 9] . ( 307 sec) [ -17446.1873] [ 3073] [depth= 9] . ( 308 sec) [ -17442.2115] [ 3072] [depth= 1] . ( 309 sec) [ -17430.8508] [ 3068] [depth= 2] . ( 311 sec) [ -17070.0878] [ 3029] [depth= 9] . ( 312 sec) [ -17047.8707] [ 3026] [depth= 1] . ( 313 sec) [ -17029.8068] [ 3022] [depth= 9] . ( 315 sec) [ -16910.5296] [ 2994] [depth= 9] . ( 316 sec) [ -16901.0270] [ 2992] [depth= 3] . ( 317 sec) [ -16893.5356] [ 2990] [depth= 1] . ( 319 sec) [ -16876.2722] [ 2985] [depth= 3] . ( 320 sec) [ -16836.2032] [ 2971] [depth= 4] . ( 322 sec) [ -16809.2070] [ 2964] [depth= 8] . ( 323 sec) [ -16790.5161] [ 2964] [depth= 1] . ( 325 sec) [ -16787.2551] [ 2959] [depth= 13] . ( 326 sec) [ -16779.0659] [ 2958] [depth= 1] . ( 328 sec) [ -16772.1000] [ 2958] [depth= 2] . ( 329 sec) [ -16722.4887] [ 2954] [depth= 13] . ( 330 sec) [ -16718.4448] [ 2957] [depth= 1] . ( 331 sec) [ -16705.8159] [ 2955] [depth= 2] . ( 333 sec) [ -16652.0534] [ 2945] [depth= 8] . ( 336 sec) [ -16649.7198] [ 2945] [depth= 1] . ( 337 sec) [ -16648.4758] [ 2945] [depth= 1] . ( 339 sec) [ -16645.9943] [ 2945] [depth= 1] . ( 340 sec) [ -16642.5403] [ 2944] [depth= 1] . ( 341 sec) [ -16584.8395] [ 2903] [depth= 6] . ( 343 sec) [ -16416.7456] [ 2867] [depth= 17] . ( 344 sec) [ -16379.6661] [ 2865] [depth= 5] . ( 346 sec) [ -16376.0818] [ 2863] [depth= 15] . ( 347 sec) [ -16355.6621] [ 2871] [depth= 1] . ( 349 sec) [ -16290.6310] [ 2861] [depth= 2] . ( 350 sec) [ -16290.5230] [ 2863] [depth= 1] . ( 351 sec) [ -16181.2757] [ 2856] [depth= 2] . ( 353 sec) [ -16180.6161] [ 2856] [depth= 2] . ( 354 sec) [ -16144.6823] [ 2850] [depth= 4] . ( 356 sec) [ -16105.6477] [ 2841] [depth= 10] . ( 357 sec) [ -16088.1591] [ 2838] [depth= 2] . ( 358 sec) [ -16088.1224] [ 2838] [depth= 1] . ( 366 sec) [ -16077.4714] [ 2840] [depth= 5] . ( 367 sec) [ -16017.1618] [ 2835] [depth= 9] . ( 369 sec) [ -16015.7428] [ 2835] [depth= 1] . ( 373 sec) [ -15934.3734] [ 2819] [depth= 12] . ( 374 sec) [ -15930.2260] [ 2815] [depth= 2] . ( 375 sec) [ -15765.9516] [ 2816] [depth= 3] . ( 377 sec) [ -15748.6497] [ 2811] [depth= 1] . ( 378 sec) [ -15518.6938] [ 2812] [depth= 6] . ( 379 sec) [ -15341.0336] [ 2747] [depth= 22] . ( 381 sec) [ -15324.8596] [ 2742] [depth= 1] . ( 381 sec) [ -15298.9021] [ 2742] [depth= 5] . ( 383 sec) [ -15131.6318] [ 2708] [depth= 9] . ( 384 sec) [ -15127.1552] [ 2707] [depth= 1] . ( 386 sec) [ -15123.3544] [ 2705] [depth= 1] . ( 387 sec) [ -15121.5012] [ 2707] [depth= 1] . ( 394 sec) [ -15101.4736] [ 2695] [depth= 3] . ( 395 sec) [ -15098.2952] [ 2695] [depth= 2] . ( 397 sec) [ -15088.2481] [ 2690] [depth= 4] . ( 398 sec) [ -15046.4816] [ 2679] [depth= 9] . ( 400 sec) [ -15037.1188] [ 2675] [depth= 2] . ( 401 sec) [ -15031.6482] [ 2674] [depth= 1] . ( 402 sec) [ -15028.4192] [ 2674] [depth= 1] . ( 403 sec) [ -14985.6928] [ 2668] [depth= 6] . ( 405 sec) [ -14938.2673] [ 2655] [depth= 9] . ( 406 sec) [ -14933.0860] [ 2652] [depth= 8] . ( 408 sec) [ -14900.4364] [ 2646] [depth= 10] . ( 408 sec) [ -14898.1796] [ 2643] [depth= 4] . ( 409 sec) [ -14879.4503] [ 2628] [depth= 1] . ( 411 sec) [ -14869.6471] [ 2625] [depth= 3] . 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( 451 sec) [ -14527.8859] [ 2563] [depth= 1] . ( 452 sec) [ -14527.0585] [ 2563] [depth= 1] . ( 457 sec) [ -14526.9048] [ 2563] [depth= 1] . ( 458 sec) [ -14524.4661] [ 2562] [depth= 1] . ( 459 sec) [ -14513.8492] [ 2559] [depth= 1] . ( 469 sec) [ -14513.6214] [ 2559] [depth= 1] . ( 470 sec) [ -14513.0562] [ 2560] [depth= 1] . ( 471 sec) [ -14494.0931] [ 2548] [depth= 1] . ( 473 sec) [ -14491.3366] [ 2549] [depth= 1] . ( 474 sec) [ -14479.8169] [ 2548] [depth= 1] . ( 476 sec) [ -14478.9780] [ 2547] [depth= 2] . ( 477 sec) [ -14468.1730] [ 2547] [depth= 3] . ( 479 sec) [ -14458.5718] [ 2544] [depth= 3] . ( 480 sec) [ -14455.7833] [ 2543] [depth= 1] . ( 482 sec) [ -14454.9286] [ 2543] [depth= 1] . ( 485 sec) [ -14445.1834] [ 2543] [depth= 2] . ( 486 sec) [ -14429.6485] [ 2540] [depth= 16] . ( 487 sec) [ -14429.1013] [ 2540] [depth= 1] . ( 489 sec) [ -14426.4672] [ 2540] [depth= 1] . ( 490 sec) [ -14425.7130] [ 2540] [depth= 1] . ( 492 sec) [ -14424.0241] [ 2539] [depth= 1] . ( 493 sec) [ -14421.4350] [ 2538] [depth= 1] . ( 497 sec) [ -14180.4606] [ 2487] [depth= 5] . ( 498 sec) [ -14099.7518] [ 2485] [depth= 3] . ( 504 sec) [ -14095.9664] [ 2488] [depth= 7] . ( 506 sec) [ -14090.7336] [ 2488] [depth= 1] . ( 507 sec) [ -14088.5665] [ 2487] [depth= 2] . ( 513 sec) [ -14088.3337] [ 2487] [depth= 1] . ( 516 sec) [ -14088.0557] [ 2487] [depth= 1] . ( 518 sec) [ -14077.4719] [ 2484] [depth= 2] . ( 523 sec) [ -13884.6845] [Branch lengths ] . ( 526 sec) [ -13873.4019] [Alpha ][ 0.653405] . ( 532 sec) [ -13870.1013] [ 2483] [depth= 1] . ( 533 sec) [ -13868.6505] [ 2483] [depth= 2] . ( 535 sec) [ -13867.5410] [ 2482] [depth= 4] . ( 536 sec) [ -13851.5788] [ 2480] [depth= 4] . ( 539 sec) [ -13847.0098] [ 2478] [depth= 2] . ( 541 sec) [ -13842.6130] [ 2476] [depth= 1] . ( 546 sec) [ -13839.9940] [ 2472] [depth= 14] . ( 547 sec) [ -13828.8524] [ 2472] [depth= 1] . ( 548 sec) [ -13818.2723] [ 2473] [depth= 15] . ( 550 sec) [ -13815.1437] [ 2469] [depth= 2] . ( 551 sec) [ -13815.0929] [ 2469] [depth= 1] . ( 552 sec) [ -13784.6503] [ 2463] [depth= 12] . ( 554 sec) [ -13783.8721] [ 2463] [depth= 1] . ( 556 sec) [ -13776.7964] [ 2461] [depth= 2] . ( 560 sec) [ -13775.0195] [ 2460] [depth= 1] . ( 570 sec) [ -13766.9644] [ 2446] [depth= 5] . ( 572 sec) [ -13766.9329] [ 2446] [depth= 2] . ( 577 sec) [ -13765.3784] [ 2441] [depth= 2] . ( 579 sec) [ -13714.3378] [ 2412] [depth= 18] . ( 580 sec) [ -13714.1884] [ 2412] [depth= 1] . ( 582 sec) [ -13703.1621] [ 2406] [depth= 11] . ( 583 sec) [ -13699.0666] [ 2401] [depth= 9] . ( 585 sec) [ -13695.6565] [ 2401] [depth= 1] . ( 591 sec) [ -13694.5130] [ 2400] [depth= 2] . ( 607 sec) [ -13694.4189] [ 2401] [depth= 1] . ( 608 sec) [ -13693.0533] [ 2400] [depth= 1] . ( 613 sec) [ -13684.7133] [ 2398] [depth= 4] . ( 614 sec) [ -13684.3279] [ 2398] [depth= 2] . ( 616 sec) [ -13683.4332] [ 2398] [depth= 1] . ( 619 sec) [ -13676.6772] [ 2397] [depth= 24] . ( 623 sec) [ -13676.0884] [ 2396] [depth= 1] . ( 624 sec) [ -13672.7135] [ 2397] [depth= 2] . ( 625 sec) [ -13672.6814] [ 2397] [depth= 1] . ( 640 sec) [ -13671.0141] [ 2396] [depth= 1] . ( 655 sec) [ -13669.8024] [ 2390] [depth= 2] . ( 656 sec) [ -13632.1722] [ 2383] [depth= 3] . ( 660 sec) [ -13631.8716] [ 2383] [depth= 2] . ( 662 sec) [ -13631.1752] [ 2383] [depth= 2] . ( 668 sec) [ -13435.5714] [ 2342] [depth= 18] . ( 670 sec) [ -13387.3774] [ 2326] [depth= 7] . ( 674 sec) [ -13382.6297] [ 2324] [depth= 3] . ( 676 sec) [ -13361.5723] [ 2321] [depth= 1] . ( 678 sec) [ -13360.8203] [ 2320] [depth= 3] . ( 679 sec) [ -13350.2573] [ 2320] [depth= 7] . ( 681 sec) [ -13345.1264] [ 2323] [depth= 1] . ( 690 sec) [ -13344.8058] [ 2324] [depth= 1] . ( 697 sec) [ -13342.9081] [ 2324] [depth= 5] . ( 709 sec) [ -13342.1902] [ 2324] [depth= 1] . ( 711 sec) [ -13341.3560] [ 2324] [depth= 4] . ( 712 sec) [ -13330.9680] [ 2306] [depth= 20] . ( 716 sec) [ -13330.8767] [ 2306] [depth= 1] . ( 717 sec) [ -13330.3525] [ 2306] [depth= 1] . ( 719 sec) [ -13330.2370] [ 2306] [depth= 1] . ( 720 sec) [ -13328.9803] [ 2305] [depth= 3] . ( 722 sec) [ -13317.8041] [ 2304] [depth= 2] . ( 724 sec) [ -13317.4168] [ 2302] [depth= 1] . ( 726 sec) [ -13308.6052] [ 2297] [depth= 6] . ( 727 sec) [ -13295.8531] [ 2283] [depth= 1] . ( 729 sec) [ -13294.4636] [ 2283] [depth= 1] . ( 732 sec) [ -13293.9584] [ 2283] [depth= 1] . ( 737 sec) [ -13291.9799] [ 2281] [depth= 2] . ( 739 sec) [ -13291.2120] [ 2281] [depth= 2] . ( 752 sec) [ -13285.5633] [ 2279] [depth= 2] . ( 758 sec) [ -13277.3287] [ 2272] [depth= 1] . ( 759 sec) [ -13270.4611] [ 2275] [depth= 1] . ( 764 sec) [ -13266.0585] [ 2274] [depth= 1] . ( 768 sec) [ -13229.7005] [ 2250] [depth= 17] . ( 769 sec) [ -13228.3363] [ 2250] [depth= 1] . ( 773 sec) [ -13209.4813] [ 2242] [depth= 3] . ( 774 sec) [ -13192.9389] [ 2241] [depth= 1] . ( 776 sec) [ -13168.1399] [ 2240] [depth= 3] . ( 777 sec) [ -13159.0229] [ 2239] [depth= 12] . ( 779 sec) [ -13158.9186] [ 2239] [depth= 2] . ( 786 sec) [ -13158.8727] [ 2239] [depth= 1] . ( 788 sec) [ -13156.8649] [ 2239] [depth= 3] . ( 790 sec) [ -13156.8124] [ 2238] [depth= 1] . ( 794 sec) [ -13156.3362] [ 2238] [depth= 1] . ( 798 sec) [ -13141.4075] [ 2239] [depth= 1] . ( 800 sec) [ -13140.6091] [ 2239] [depth= 1] . ( 803 sec) [ -13132.7157] [ 2237] [depth= 4] . ( 804 sec) [ -13129.2853] [ 2237] [depth= 1] . ( 806 sec) [ -13049.7493] [ 2216] [depth= 10] . ( 807 sec) [ -13047.6214] [ 2215] [depth= 4] . ( 809 sec) [ -13047.3495] [ 2216] [depth= 2] . ( 811 sec) [ -13047.3141] [ 2216] [depth= 1] . ( 813 sec) [ -13046.8895] [ 2216] [depth= 1] . ( 815 sec) [ -13045.9585] [ 2218] [depth= 1] . ( 818 sec) [ -13044.7212] [ 2219] [depth= 1] . ( 819 sec) [ -13043.6499] [ 2218] [depth= 1] . ( 824 sec) [ -13041.9949] [ 2218] [depth= 1] . ( 826 sec) [ -13036.2990] [ 2219] [depth= 1] . ( 828 sec) [ -13034.9255] [ 2219] [depth= 2] . ( 835 sec) [ -13034.5712] [ 2219] [depth= 2] . ( 839 sec) [ -13032.9343] [ 2219] [depth= 2] . ( 840 sec) [ -13032.4393] [ 2219] [depth= 2] . ( 848 sec) [ -13032.3698] [ 2219] [depth= 7] . ( 850 sec) [ -13031.3671] [ 2219] [depth= 1] . ( 851 sec) [ -13027.7685] [ 2220] [depth= 7] . ( 870 sec) [ -13027.4505] [ 2220] [depth= 1] . ( 875 sec) [ -13025.5083] [ 2221] [depth= 1] . ( 879 sec) [ -13025.4871] [ 2221] [depth= 3] . ( 880 sec) [ -13023.6105] [ 2221] [depth= 2] . ( 883 sec) [ -13013.7199] [ 2220] [depth= 9] . ( 885 sec) [ -12989.7938] [ 2218] [depth= 1] . ( 887 sec) [ -12987.4540] [ 2217] [depth= 2] . ( 888 sec) [ -12987.4419] [ 2216] [depth= 1] . ( 891 sec) [ -12986.4914] [ 2216] [depth= 1] . ( 893 sec) [ -12986.3859] [ 2216] [depth= 3] . ( 896 sec) [ -12980.8277] [ 2214] [depth= 5] . ( 906 sec) [ -12980.0627] [ 2214] [depth= 1] . ( 923 sec) [ -12978.0588] [ 2214] [depth= 2] . ( 925 sec) [ -12970.1928] [ 2203] [depth= 1] . ( 927 sec) [ -12969.5386] [ 2202] [depth= 1] . ( 935 sec) [ -12967.6050] [ 2202] [depth= 1] . ( 942 sec) [ -12967.5231] [ 2202] [depth= 1] . ( 947 sec) [ -12967.1912] [ 2203] [depth= 1] . ( 957 sec) [ -12966.8811] [ 2202] [depth= 1] . ( 961 sec) [ -12966.2766] [ 2203] [depth= 1] . ( 971 sec) [ -12959.6035] [ 2201] [depth= 7] . ( 972 sec) [ -12958.2822] [ 2201] [depth= 1] . ( 975 sec) [ -12958.2375] [ 2202] [depth= 1] . ( 987 sec) [ -12957.7328] [ 2202] [depth= 1] . ( 990 sec) [ -12957.4712] [ 2201] [depth= 1] . ( 991 sec) [ -12956.6193] [ 2200] [depth= 2] . ( 1003 sec) [ -12956.4170] [ 2198] [depth= 2] . ( 1005 sec) [ -12956.0447] [ 2198] [depth= 1] . ( 1006 sec) [ -12956.0223] [ 2198] [depth= 2] . ( 1009 sec) [ -12938.8520] [ 2195] [depth= 1] . ( 1011 sec) [ -12938.7205] [ 2195] [depth= 1] . ( 1012 sec) [ -12938.5453] [ 2195] [depth= 1] . ( 1019 sec) [ -12938.2934] [ 2195] [depth= 1] . ( 1027 sec) [ -12938.1836] [ 2196] [depth= 4] . ( 1032 sec) [ -12938.1152] [ 2196] [depth= 1] . ( 1035 sec) [ -12937.7189] [ 2195] [depth= 1] . ( 1037 sec) [ -12937.4165] [ 2195] [depth= 2] . ( 1044 sec) [ -12936.9242] [ 2195] [depth= 1] . ( 1047 sec) [ -12936.6433] [ 2195] [depth= 1] . ( 1054 sec) [ -12932.8656] [ 2195] [depth= 1] . ( 1063 sec) [ -12932.6350] [ 2195] [depth= 1] . ( 1072 sec) [ -12932.5408] [ 2195] [depth= 2] . ( 1078 sec) [ -12908.3962] [Branch lengths ] . ( 1081 sec) [ -12907.5049] [Alpha ][ 0.709096] . ( 1111 sec) [ -12907.4859] [ 2195] [depth= 1] . ( 1145 sec) [ -12906.9935] [ 2200] [depth= 3] . ( 1236 sec) [ -12906.8686] [ 2200] [depth= 2] . ( 1258 sec) [ -12906.8579] [ 2200] [depth= 1] . ( 1259 sec) [ -12903.7020] [ 2199] [depth= 10] . ( 1261 sec) [ -12903.4699] [ 2199] [depth= 1] . ( 1362 sec) [ -12903.2260] [ 2199] [depth= 2] . ( 1364 sec) [ -12903.2141] [ 2199] [depth= 3] . ( 1366 sec) [ -12901.6408] [ 2196] [depth= 1] . ( 1388 sec) [ -12888.5230] [ 2193] [depth= 3] . ( 1390 sec) [ -12888.2008] [ 2193] [depth= 2] . ( 1397 sec) [ -12887.7712] [ 2194] [depth= 3] . ( 1422 sec) [ -12877.1635] [ 2175] [depth= 11] . ( 1429 sec) [ -12876.6191] [ 2176] [depth= 1] . ( 1436 sec) [ -12873.2759] [ 2181] [depth= 1] . ( 1439 sec) [ -12870.3962] [ 2180] [depth= 3] . ( 1470 sec) [ -12866.6944] [ 2174] [depth= 2] . ( 1498 sec) [ -12866.6154] [ 2174] [depth= 8] . ( 1526 sec) [ -12866.5940] [ 2174] [depth= 2] . ( 1565 sec) [ -12866.0667] [ 2174] [depth= 1] . ( 1568 sec) [ -12865.8020] [ 2174] [depth= 1] . ( 1581 sec) [ -12865.5963] [ 2173] [depth= 1] . ( 1585 sec) [ -12864.8868] [ 2173] [depth= 1] . ( 1609 sec) [ -12864.8597] [ 2173] [depth= 1] . ( 1623 sec) [ -12864.7084] [ 2173] [depth= 2] . ( 1632 sec) [ -12864.5732] [ 2173] [depth= 1] . ( 1643 sec) [ -12864.5283] [ 2173] [depth= 1] . ( 1666 sec) [ -12863.8494] [ 2178] [depth= 2] . ( 1678 sec) [ -12859.7399] [ 2177] [depth= 1] . ( 1687 sec) [ -12856.8469] [ 2170] [depth= 1] . ( 1692 sec) [ -12856.8221] [ 2170] [depth= 2] . ( 1708 sec) [ -12856.7563] [ 2170] [depth= 1] . ( 1750 sec) [ -12856.4959] [ 2170] [depth= 14] . ( 1864 sec) [ -12848.8775] [Branch lengths ] . ( 1866 sec) [ -12848.7690] [Alpha ][ 0.729701] . ( 1942 sec) [ -12848.7547] [ 2170] [depth= 2] . ( 2046 sec) [ -12848.6908] [ 2170] [depth= 1] . ( 2189 sec) [ -12848.5472] [ 2170] [depth= 1] . ( 2221 sec) [ -12848.5287] [ 2170] [depth= 1] . ( 2302 sec) [ -12848.4428] [ 2170] [depth= 3] . ( 2383 sec) [ -12848.4280] [ 2170] [depth= 3] . ( 2437 sec) [ -12848.4091] [ 2170] [depth= 3] . ( 2476 sec) [ -12848.3891] [ 2170] [depth= 2] . ( 2477 sec) [ -12848.3083] [ 2170] [depth= 4] . ( 2720 sec) [ -12846.3342] [Branch lengths ] . ( 2723 sec) [ -12846.3312] [Alpha ][ 0.733283] . ( 2752 sec) [ -12846.3024] [ 2170] [depth= 2] . ( 2921 sec) [ -12846.1635] [ 2170] [depth= 1] . ( 3113 sec) [ -12846.1437] [ 2170] [depth= 1] . ( 3634 sec) [ -12845.7262] [Branch lengths ] . ( 3636 sec) [ -12845.7259] [Alpha ][ 0.734413] . ( 3636 sec) [ -12845.7259] [Topology ] . ( 3649 sec) [ -12845.6388] [Topology ] . ( 3662 sec) [ -12845.5837] [Topology ] . ( 3675 sec) [ -12845.5424] [Topology ] . ( 3687 sec) [ -12845.5138] [Topology ] . ( 3700 sec) [ -12845.4995] [Topology ] . ( 3713 sec) [ -12845.4934] [Topology ] . ( 3715 sec) [ -12845.4930] [Alpha ][ 0.735651] . ( 3716 sec) [ -12845.4930] [Topology ] . ( 3729 sec) [ -12845.4900] [Topology ] . ( 3741 sec) [ -12845.4883] [Topology ] . ( 3754 sec) [ -12845.4875] [Topology ] . ( 3756 sec) [ -12845.4875] [Alpha ][ 0.735651] . ( 3757 sec) [ -12845.4875] [Topology ] . ( 3770 sec) [ -12845.4871] [Topology ] . ( 3772 sec) [ -12845.4871] [Alpha ][ 0.735651] . Checking for NNIs, optimizing five branches... . ( 3865 sec) [ -12845.3276] [Topology ] . Checking for NNIs, optimizing five branches... . ( 3959 sec) [ -12845.3262] [Topology ] . Checking for NNIs, optimizing five branches... . ( 4052 sec) [ -12845.3261] [Topology ] . Checking for NNIs, optimizing five branches... . ( 4146 sec) [ -12845.3260] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -12845.325952. . Computing pairwise distances... . Building BioNJ tree... . Maximizing likelihood (using NNI moves)... . ( 4 sec) [ -13793.7531] [Alpha ][ 0.587356] . ( 5 sec) [ -13793.7531] [Topology ] . ( 18 sec) [ -13520.6553] [Topology ] . ( 31 sec) [ -13438.0077] [Topology ] . ( 44 sec) [ -13368.0135] [Topology ] . ( 58 sec) [ -13341.9865] [Topology ] . ( 71 sec) [ -13331.9316] [Topology ] . ( 84 sec) [ -13325.8669] [Topology ] . ( 96 sec) [ -13316.8766] [Topology ] . ( 109 sec) [ -13310.0047] [Topology ] . ( 122 sec) [ -13302.2940] [Topology ] . Checking for NNIs, optimizing five branches... . ( 245 sec) [ -13284.4697] [Topology ] . ( 247 sec) [ -13279.3145] [Alpha ][ 0.713896] . ( 248 sec) [ -13279.3145] [Topology ] . ( 261 sec) [ -13275.1223] [Topology ] . ( 274 sec) [ -13271.4961] [Topology ] . ( 286 sec) [ -13267.0941] [Topology ] . ( 299 sec) [ -13263.3892] [Topology ] . ( 312 sec) [ -13260.9448] [Topology ] . ( 325 sec) [ -13259.4216] [Topology ] . Checking for NNIs, optimizing five branches... . ( 429 sec) [ -13245.1691] [Topology ] . ( 432 sec) [ -13245.1552] [Alpha ][ 0.721149] . ( 433 sec) [ -13245.1552] [Topology ] . ( 445 sec) [ -13240.8513] [Topology ] . ( 458 sec) [ -13239.8187] [Topology ] . ( 471 sec) [ -13239.1737] [Topology ] . ( 483 sec) [ -13238.7619] [Topology ] . ( 496 sec) [ -13238.6037] [Topology ] . ( 509 sec) [ -13238.5114] [Topology ] . ( 521 sec) [ -13238.4450] [Topology ] . ( 534 sec) [ -13238.3907] [Topology ] . Checking for NNIs, optimizing five branches... . ( 638 sec) [ -13232.8902] [Topology ] . ( 640 sec) [ -13232.8902] [Alpha ][ 0.721149] . ( 641 sec) [ -13232.8902] [Topology ] . ( 654 sec) [ -13231.4025] [Topology ] . ( 666 sec) [ -13230.4220] [Topology ] . ( 679 sec) [ -13230.0884] [Topology ] . ( 692 sec) [ -13229.9880] [Topology ] . ( 705 sec) [ -13229.9371] [Topology ] . ( 717 sec) [ -13229.9090] [Topology ] . ( 730 sec) [ -13229.8927] [Topology ] . ( 743 sec) [ -13229.8830] [Topology ] . Checking for NNIs, optimizing five branches... . ( 849 sec) [ -13225.1200] [Topology ] . ( 851 sec) [ -13225.1200] [Alpha ][ 0.721870] . ( 852 sec) [ -13225.1200] [Topology ] . ( 865 sec) [ -13225.0969] [Topology ] . ( 877 sec) [ -13225.0924] [Topology ] . ( 890 sec) [ -13225.0905] [Topology ] . ( 903 sec) [ -13225.0896] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1009 sec) [ -13220.7379] [Topology ] . ( 1011 sec) [ -13220.7379] [Alpha ][ 0.721870] . ( 1011 sec) [ -13220.7379] [Topology ] . ( 1024 sec) [ -13220.4553] [Topology ] . ( 1037 sec) [ -13220.2922] [Topology ] . ( 1050 sec) [ -13220.2543] [Topology ] . ( 1062 sec) [ -13220.2441] [Topology ] . ( 1075 sec) [ -13220.2414] [Topology ] . ( 1088 sec) [ -13220.2407] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1192 sec) [ -13215.8776] [Topology ] . ( 1195 sec) [ -13215.8776] [Alpha ][ 0.721870] . ( 1195 sec) [ -13215.8776] [Topology ] . ( 1208 sec) [ -13215.8621] [Topology ] . ( 1220 sec) [ -13215.8600] [Topology ] . ( 1233 sec) [ -13215.8594] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1338 sec) [ -13212.4824] [Topology ] . ( 1340 sec) [ -13212.4824] [Alpha ][ 0.721148] . ( 1341 sec) [ -13212.4824] [Topology ] . ( 1354 sec) [ -13209.8751] [Topology ] . ( 1366 sec) [ -13209.3164] [Topology ] . ( 1379 sec) [ -13209.2102] [Topology ] . ( 1392 sec) [ -13208.8807] [Topology ] . ( 1404 sec) [ -13208.0600] [Topology ] . ( 1417 sec) [ -13206.5285] [Topology ] . ( 1429 sec) [ -13205.9782] [Topology ] . ( 1442 sec) [ -13205.8797] [Topology ] . ( 1455 sec) [ -13205.8510] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1569 sec) [ -13204.0406] [Topology ] . ( 1571 sec) [ -13204.0405] [Alpha ][ 0.721870] . ( 1572 sec) [ -13204.0405] [Topology ] . ( 1584 sec) [ -13203.9287] [Topology ] . ( 1597 sec) [ -13203.9275] [Topology ] . ( 1609 sec) [ -13200.1512] [Topology ] . ( 1622 sec) [ -13196.5738] [Topology ] . ( 1635 sec) [ -13194.5729] [Topology ] . ( 1647 sec) [ -13193.8221] [Topology ] . ( 1660 sec) [ -13192.6245] [Topology ] . ( 1673 sec) [ -13191.8344] [Topology ] . ( 1686 sec) [ -13191.6880] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1799 sec) [ -13190.0646] [Topology ] . ( 1801 sec) [ -13190.0630] [Alpha ][ 0.724334] . ( 1802 sec) [ -13190.0630] [Topology ] . ( 1815 sec) [ -13189.5071] [Topology ] . ( 1827 sec) [ -13181.3201] [Topology ] . ( 1840 sec) [ -13179.8319] [Topology ] . ( 1853 sec) [ -13176.6713] [Topology ] . ( 1865 sec) [ -13175.3010] [Topology ] . ( 1878 sec) [ -13172.9735] [Topology ] . ( 1891 sec) [ -13171.0032] [Topology ] . ( 1904 sec) [ -13169.9000] [Topology ] . ( 1916 sec) [ -13169.6685] [Topology ] . Checking for NNIs, optimizing five branches... . ( 2028 sec) [ -13168.5938] [Topology ] . ( 2030 sec) [ -13168.5936] [Alpha ][ 0.725185] . ( 2031 sec) [ -13168.5936] [Topology ] . ( 2044 sec) [ -13168.5688] [Topology ] . ( 2056 sec) [ -13168.5557] [Topology ] . ( 2069 sec) [ -13168.5475] [Topology ] . ( 2082 sec) [ -13168.5421] [Topology ] . ( 2094 sec) [ -13168.5386] [Topology ] . ( 2107 sec) [ -13168.5362] [Topology ] . Checking for NNIs, optimizing five branches... . ( 2206 sec) [ -13167.7703] [Topology ] . ( 2208 sec) [ -13167.7703] [Alpha ][ 0.725185] . ( 2209 sec) [ -13167.7703] [Topology ] . ( 2222 sec) [ -13167.4837] [Topology ] . ( 2235 sec) [ -13167.1672] [Topology ] . ( 2247 sec) [ -13167.1121] [Topology ] . ( 2260 sec) [ -13167.0937] [Topology ] . ( 2273 sec) [ -13167.0864] [Topology ] . ( 2285 sec) [ -13167.0831] [Topology ] . ( 2298 sec) [ -13167.0815] [Topology ] . Checking for NNIs, optimizing five branches... . ( 2398 sec) [ -13166.4656] [Topology ] . ( 2400 sec) [ -13166.4653] [Alpha ][ 0.726195] . ( 2401 sec) [ -13166.4653] [Topology ] . ( 2414 sec) [ -13166.4406] [Topology ] . ( 2427 sec) [ -13166.4354] [Topology ] . ( 2439 sec) [ -13166.4333] [Topology ] . ( 2452 sec) [ -13166.4320] [Topology ] . ( 2465 sec) [ -13166.4312] [Topology ] . Checking for NNIs, optimizing five branches... . ( 2568 sec) [ -13165.1013] [Topology ] . ( 2570 sec) [ -13165.1012] [Alpha ][ 0.726921] . ( 2571 sec) [ -13165.1012] [Topology ] . ( 2584 sec) [ -13165.0844] [Topology ] . ( 2597 sec) [ -13165.0799] [Topology ] . ( 2610 sec) [ -13165.0776] [Topology ] . ( 2622 sec) [ -13165.0761] [Topology ] . ( 2635 sec) [ -13165.0750] [Topology ] . ( 2648 sec) [ -13165.0742] [Topology ] . Checking for NNIs, optimizing five branches... . ( 2750 sec) [ -13164.6526] [Topology ] . ( 2752 sec) [ -13164.6525] [Alpha ][ 0.727648] . ( 2753 sec) [ -13164.6525] [Topology ] . ( 2766 sec) [ -13164.5517] [Topology ] . ( 2778 sec) [ -13164.5181] [Topology ] . ( 2791 sec) [ -13161.2571] [Topology ] . ( 2804 sec) [ -13160.3559] [Topology ] . ( 2817 sec) [ -13157.8482] [Topology ] . ( 2830 sec) [ -13150.2335] [Topology ] . ( 2843 sec) [ -13145.5830] [Topology ] . ( 2855 sec) [ -13144.5284] [Topology ] . ( 2868 sec) [ -13144.3239] [Topology ] . Checking for NNIs, optimizing five branches... . ( 2971 sec) [ -13143.9256] [Topology ] . ( 2973 sec) [ -13143.9254] [Alpha ][ 0.728482] . ( 2974 sec) [ -13143.9254] [Topology ] . ( 2987 sec) [ -13143.8162] [Topology ] . ( 3000 sec) [ -13143.7636] [Topology ] . ( 3012 sec) [ -13143.6201] [Topology ] . ( 3025 sec) [ -13143.5211] [Topology ] . ( 3038 sec) [ -13143.4964] [Topology ] . ( 3051 sec) [ -13143.4849] [Topology ] . ( 3064 sec) [ -13143.4380] [Topology ] . ( 3077 sec) [ -13143.2886] [Topology ] . ( 3090 sec) [ -13143.2536] [Topology ] . Checking for NNIs, optimizing five branches... . ( 3198 sec) [ -13143.1266] [Topology ] . ( 3200 sec) [ -13143.1266] [Alpha ][ 0.728482] . ( 3201 sec) [ -13143.1266] [Topology ] . ( 3214 sec) [ -13143.0260] [Topology ] . ( 3227 sec) [ -13142.9909] [Topology ] . ( 3240 sec) [ -13142.9653] [Topology ] . ( 3253 sec) [ -13142.9432] [Topology ] . ( 3266 sec) [ -13142.9224] [Topology ] . ( 3278 sec) [ -13142.9026] [Topology ] . Checking for NNIs, optimizing five branches... . ( 3374 sec) [ -13142.9016] [Topology ] . ( 3376 sec) [ -13142.9016] [Alpha ][ 0.728482] . ( 3377 sec) [ -13142.9016] [Topology ] . ( 3390 sec) [ -13142.8703] [Topology ] . ( 3402 sec) [ -13142.8461] [Topology ] . ( 3415 sec) [ -13142.8240] [Topology ] . ( 3428 sec) [ -13142.8032] [Topology ] . ( 3441 sec) [ -13142.7865] [Topology ] . ( 3454 sec) [ -13142.7788] [Topology ] . ( 3467 sec) [ -13142.7762] [Topology ] . Checking for NNIs, optimizing five branches... . ( 3563 sec) [ -13142.7752] [Topology ] . ( 3565 sec) [ -13142.7752] [Alpha ][ 0.728482] . ( 3565 sec) [ -13142.7752] [Topology ] . ( 3578 sec) [ -13142.7694] [Topology ] . ( 3591 sec) [ -13142.7651] [Topology ] . ( 3604 sec) [ -13142.7635] [Topology ] . ( 3617 sec) [ -13142.7628] [Topology ] . Checking for NNIs, optimizing five branches... . ( 3715 sec) [ -13142.7628] [Alpha ][ 0.728482] . ( 3716 sec) [ -13142.7628] [Topology ] . ( 3729 sec) [ -13142.7625] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 3925 sec) [ -13793.7531] [Alpha ][ 0.587356] . ( 3930 sec) [ -13793.5943] [ 2318] [depth= 1] . ( 3931 sec) [ -13793.3766] [ 2318] [depth= 1] . ( 3933 sec) [ -13793.3429] [ 2318] [depth= 1] . ( 3938 sec) [ -13793.1509] [ 2318] [depth= 1] . ( 3939 sec) [ -13792.4523] [ 2318] [depth= 1] . ( 3941 sec) [ -13792.4316] [ 2318] [depth= 1] . ( 3952 sec) [ -13775.7445] [ 2318] [depth= 1] . ( 3954 sec) [ -13765.9972] [ 2318] [depth= 1] . ( 3963 sec) [ -13756.6095] [ 2315] [depth= 2] . ( 3965 sec) [ -13756.2925] [ 2318] [depth= 1] . ( 3968 sec) [ -13754.9427] [ 2315] [depth= 1] . ( 3972 sec) [ -13754.3792] [ 2319] [depth= 1] . ( 3984 sec) [ -13748.0524] [ 2324] [depth= 2] . ( 3986 sec) [ -13739.8797] [ 2320] [depth= 2] . ( 3987 sec) [ -13735.9151] [ 2321] [depth= 1] . ( 3989 sec) [ -13733.5529] [ 2321] [depth= 1] . ( 3991 sec) [ -13726.0345] [ 2318] [depth= 1] . ( 4004 sec) [ -13706.1504] [ 2316] [depth= 4] . ( 4005 sec) [ -13676.8374] [ 2305] [depth= 9] . ( 4007 sec) [ -13675.9165] [ 2307] [depth= 7] . ( 4034 sec) [ -13663.2889] [ 2306] [depth= 1] . ( 4036 sec) [ -13663.0499] [ 2306] [depth= 2] . ( 4048 sec) [ -13653.1229] [ 2305] [depth= 1] . ( 4055 sec) [ -13651.3550] [ 2305] [depth= 1] . ( 4063 sec) [ -13626.6391] [ 2293] [depth= 11] . ( 4065 sec) [ -13623.2763] [ 2292] [depth= 1] . ( 4066 sec) [ -13601.5735] [ 2288] [depth= 7] . ( 4068 sec) [ -13570.6331] [ 2281] [depth= 6] . ( 4070 sec) [ -13526.8637] [ 2269] [depth= 11] . ( 4071 sec) [ -13520.5355] [ 2268] [depth= 1] . ( 4073 sec) [ -13513.9596] [ 2268] [depth= 2] . ( 4074 sec) [ -13493.1363] [ 2262] [depth= 5] . ( 4076 sec) [ -13477.9599] [ 2262] [depth= 3] . ( 4077 sec) [ -13466.6384] [ 2262] [depth= 1] . ( 4079 sec) [ -13374.7411] [ 2238] [depth= 11] . ( 4082 sec) [ -13372.3376] [ 2238] [depth= 2] . ( 4084 sec) [ -13368.7876] [ 2237] [depth= 3] . ( 4092 sec) [ -13362.1308] [ 2235] [depth= 3] . ( 4094 sec) [ -13360.1275] [ 2235] [depth= 3] . ( 4095 sec) [ -13359.8561] [ 2235] [depth= 1] . ( 4097 sec) [ -13349.3757] [ 2233] [depth= 2] . ( 4101 sec) [ -13339.0267] [ 2228] [depth= 6] . ( 4102 sec) [ -13293.7497] [ 2214] [depth= 14] . ( 4103 sec) [ -13292.6002] [ 2213] [depth= 1] . ( 4105 sec) [ -13292.2884] [ 2212] [depth= 3] . ( 4110 sec) [ -13290.5210] [ 2212] [depth= 1] . ( 4111 sec) [ -13290.3000] [ 2213] [depth= 1] . ( 4114 sec) [ -13289.4927] [ 2215] [depth= 1] . ( 4118 sec) [ -13286.9914] [ 2216] [depth= 1] . ( 4120 sec) [ -13285.9712] [ 2214] [depth= 1] . ( 4123 sec) [ -13284.1159] [ 2212] [depth= 6] . ( 4124 sec) [ -13268.6962] [ 2210] [depth= 12] . ( 4125 sec) [ -13268.3357] [ 2208] [depth= 1] . ( 4127 sec) [ -13267.0741] [ 2208] [depth= 1] . ( 4128 sec) [ -13266.7426] [ 2208] [depth= 1] . ( 4131 sec) [ -13264.0041] [ 2208] [depth= 1] . ( 4133 sec) [ -13263.9403] [ 2208] [depth= 1] . ( 4134 sec) [ -13263.5602] [ 2208] [depth= 1] . ( 4151 sec) [ -13259.5980] [ 2209] [depth= 1] . ( 4152 sec) [ -13236.4215] [ 2208] [depth= 2] . ( 4154 sec) [ -13235.0346] [ 2206] [depth= 2] . ( 4158 sec) [ -13233.2562] [ 2207] [depth= 1] . ( 4163 sec) [ -13232.2852] [ 2208] [depth= 1] . ( 4165 sec) [ -13231.1487] [ 2207] [depth= 4] . ( 4169 sec) [ -13203.3142] [ 2200] [depth= 8] . ( 4173 sec) [ -13202.8258] [ 2201] [depth= 1] . ( 4174 sec) [ -13201.8187] [ 2200] [depth= 1] . ( 4179 sec) [ -13200.6499] [ 2202] [depth= 2] . ( 4182 sec) [ -13197.0671] [ 2202] [depth= 1] . ( 4183 sec) [ -13196.3461] [ 2201] [depth= 1] . ( 4196 sec) [ -13192.7648] [ 2202] [depth= 2] . ( 4198 sec) [ -13173.5052] [ 2197] [depth= 6] . ( 4201 sec) [ -13173.3332] [ 2197] [depth= 1] . ( 4203 sec) [ -13171.7260] [ 2195] [depth= 3] . ( 4205 sec) [ -13171.2663] [ 2195] [depth= 2] . ( 4206 sec) [ -13164.6161] [ 2195] [depth= 1] . ( 4208 sec) [ -13141.6081] [ 2192] [depth= 6] . ( 4209 sec) [ -13135.8094] [ 2192] [depth= 3] . ( 4211 sec) [ -13135.2979] [ 2192] [depth= 3] . ( 4213 sec) [ -13107.4538] [ 2187] [depth= 12] . ( 4215 sec) [ -13107.4156] [ 2187] [depth= 5] . ( 4217 sec) [ -13105.8293] [ 2187] [depth= 1] . ( 4219 sec) [ -13105.4432] [ 2187] [depth= 2] . ( 4222 sec) [ -13104.9557] [ 2187] [depth= 2] . ( 4224 sec) [ -13101.8807] [ 2186] [depth= 3] . ( 4226 sec) [ -13100.9820] [ 2186] [depth= 1] . ( 4228 sec) [ -13100.1709] [ 2186] [depth= 1] . ( 4229 sec) [ -13099.5573] [ 2187] [depth= 1] . ( 4236 sec) [ -13099.1565] [ 2187] [depth= 2] . ( 4238 sec) [ -13098.0531] [ 2187] [depth= 2] . ( 4241 sec) [ -13097.5354] [ 2187] [depth= 1] . ( 4246 sec) [ -13097.1396] [ 2187] [depth= 1] . ( 4247 sec) [ -13090.8414] [ 2186] [depth= 1] . ( 4251 sec) [ -13090.7045] [ 2186] [depth= 1] . ( 4252 sec) [ -13090.5489] [ 2186] [depth= 2] . ( 4257 sec) [ -13089.6035] [ 2186] [depth= 1] . ( 4260 sec) [ -13089.0252] [ 2187] [depth= 4] . ( 4262 sec) [ -13089.0111] [ 2187] [depth= 2] . ( 4263 sec) [ -13087.9764] [ 2189] [depth= 1] . ( 4265 sec) [ -13087.7221] [ 2189] [depth= 1] . ( 4266 sec) [ -13083.6959] [ 2188] [depth= 1] . ( 4268 sec) [ -13083.3358] [ 2188] [depth= 2] . ( 4274 sec) [ -13078.3683] [ 2187] [depth= 2] . ( 4275 sec) [ -13077.1170] [ 2187] [depth= 1] . ( 4280 sec) [ -13076.1466] [ 2187] [depth= 4] . ( 4281 sec) [ -13071.8185] [ 2188] [depth= 2] . ( 4284 sec) [ -13071.4761] [ 2188] [depth= 1] . ( 4301 sec) [ -13071.3022] [ 2188] [depth= 1] . ( 4313 sec) [ -13070.1176] [ 2189] [depth= 1] . ( 4315 sec) [ -13069.0867] [ 2188] [depth= 1] . ( 4321 sec) [ -13067.2618] [ 2189] [depth= 3] . ( 4323 sec) [ -13066.4716] [ 2188] [depth= 2] . ( 4339 sec) [ -13065.5878] [ 2188] [depth= 1] . ( 4341 sec) [ -13065.4746] [ 2188] [depth= 1] . ( 4343 sec) [ -13065.4360] [ 2189] [depth= 1] . ( 4344 sec) [ -13065.1851] [ 2189] [depth= 1] . ( 4348 sec) [ -13064.5043] [ 2189] [depth= 1] . ( 4362 sec) [ -13058.9299] [ 2188] [depth= 3] . ( 4363 sec) [ -13058.7959] [ 2188] [depth= 1] . ( 4364 sec) [ -13058.7304] [ 2188] [depth= 1] . ( 4366 sec) [ -13052.5370] [ 2187] [depth= 2] . ( 4367 sec) [ -13050.2265] [ 2188] [depth= 1] . ( 4374 sec) [ -13049.9081] [ 2188] [depth= 1] . ( 4378 sec) [ -13048.9231] [ 2191] [depth= 7] . ( 4380 sec) [ -13048.7421] [ 2191] [depth= 1] . ( 4384 sec) [ -13045.5597] [ 2191] [depth= 1] . ( 4386 sec) [ -13045.4863] [ 2191] [depth= 2] . ( 4388 sec) [ -13045.1382] [ 2191] [depth= 3] . ( 4394 sec) [ -13040.5369] [ 2189] [depth= 2] . ( 4395 sec) [ -13040.5019] [ 2190] [depth= 1] . ( 4397 sec) [ -13038.6367] [ 2191] [depth= 2] . ( 4403 sec) [ -13037.8834] [ 2191] [depth= 1] . ( 4404 sec) [ -13037.6357] [ 2191] [depth= 2] . ( 4408 sec) [ -13036.4306] [ 2191] [depth= 6] . ( 4410 sec) [ -13035.2017] [ 2191] [depth= 1] . ( 4415 sec) [ -13031.3024] [ 2190] [depth= 4] . ( 4426 sec) [ -13030.8243] [ 2189] [depth= 1] . ( 4427 sec) [ -13029.9148] [ 2188] [depth= 1] . ( 4429 sec) [ -13029.7673] [ 2189] [depth= 4] . ( 4430 sec) [ -13029.4536] [ 2189] [depth= 3] . ( 4431 sec) [ -13023.2685] [ 2187] [depth= 1] . ( 4433 sec) [ -13023.0534] [ 2187] [depth= 1] . ( 4434 sec) [ -13020.9811] [ 2185] [depth= 4] . ( 4439 sec) [ -13019.6298] [ 2185] [depth= 3] . ( 4441 sec) [ -13019.2002] [ 2185] [depth= 1] . ( 4442 sec) [ -13018.4425] [ 2185] [depth= 2] . ( 4443 sec) [ -13016.7036] [ 2185] [depth= 2] . ( 4445 sec) [ -13015.5989] [ 2184] [depth= 1] . ( 4454 sec) [ -12925.0074] [Branch lengths ] . ( 4457 sec) [ -12921.4114] [Alpha ][ 0.699755] . ( 4462 sec) [ -12921.3680] [ 2184] [depth= 1] . ( 4483 sec) [ -12921.0593] [ 2185] [depth= 1] . ( 4492 sec) [ -12920.5124] [ 2181] [depth= 1] . ( 4526 sec) [ -12920.3065] [ 2180] [depth= 2] . ( 4542 sec) [ -12919.9108] [ 2180] [depth= 1] . ( 4566 sec) [ -12919.7378] [ 2179] [depth= 1] . ( 4573 sec) [ -12919.5367] [ 2179] [depth= 1] . ( 4581 sec) [ -12919.0645] [ 2179] [depth= 1] . ( 4595 sec) [ -12918.9764] [ 2179] [depth= 2] . ( 4597 sec) [ -12918.9399] [ 2179] [depth= 1] . ( 4598 sec) [ -12918.5421] [ 2181] [depth= 1] . ( 4600 sec) [ -12917.9926] [ 2181] [depth= 1] . ( 4618 sec) [ -12917.3919] [ 2181] [depth= 1] . ( 4630 sec) [ -12917.3270] [ 2181] [depth= 1] . ( 4632 sec) [ -12917.1707] [ 2181] [depth= 2] . ( 4638 sec) [ -12916.9932] [ 2181] [depth= 1] . ( 4639 sec) [ -12911.5485] [ 2178] [depth= 1] . ( 4646 sec) [ -12910.9903] [ 2178] [depth= 2] . ( 4667 sec) [ -12910.8216] [ 2178] [depth= 1] . ( 4673 sec) [ -12910.7293] [ 2178] [depth= 1] . ( 4695 sec) [ -12909.1435] [ 2178] [depth= 4] . ( 4712 sec) [ -12907.2378] [ 2177] [depth= 6] . ( 4723 sec) [ -12907.1840] [ 2177] [depth= 1] . ( 4752 sec) [ -12905.4979] [ 2177] [depth= 1] . ( 4755 sec) [ -12905.4070] [ 2177] [depth= 2] . ( 4760 sec) [ -12904.7182] [ 2177] [depth= 2] . ( 4763 sec) [ -12904.3577] [ 2177] [depth= 14] . ( 4777 sec) [ -12904.2708] [ 2177] [depth= 1] . ( 4802 sec) [ -12904.1409] [ 2177] [depth= 4] . ( 4804 sec) [ -12902.0904] [ 2176] [depth= 4] . ( 4807 sec) [ -12902.0219] [ 2176] [depth= 3] . ( 4810 sec) [ -12901.3720] [ 2176] [depth= 9] . ( 4813 sec) [ -12901.2508] [ 2176] [depth= 3] . ( 4815 sec) [ -12901.1570] [ 2176] [depth= 2] . ( 4824 sec) [ -12901.0081] [ 2176] [depth= 1] . ( 4827 sec) [ -12900.8449] [ 2176] [depth= 2] . ( 4839 sec) [ -12900.8208] [ 2176] [depth= 1] . ( 4841 sec) [ -12900.7938] [ 2176] [depth= 1] . ( 4845 sec) [ -12900.7459] [ 2176] [depth= 1] . ( 4854 sec) [ -12900.6710] [ 2176] [depth= 1] . ( 4889 sec) [ -12900.6346] [ 2176] [depth= 2] . ( 4897 sec) [ -12900.3021] [ 2175] [depth= 1] . ( 4899 sec) [ -12900.2265] [ 2175] [depth= 1] . ( 4960 sec) [ -12900.1911] [ 2175] [depth= 1] . ( 4962 sec) [ -12899.1709] [ 2175] [depth= 1] . ( 4971 sec) [ -12899.1535] [ 2175] [depth= 2] . ( 4991 sec) [ -12899.0788] [ 2176] [depth= 1] . ( 5008 sec) [ -12898.9084] [ 2176] [depth= 1] . ( 5010 sec) [ -12895.9564] [ 2171] [depth= 6] . ( 5016 sec) [ -12893.0324] [ 2170] [depth= 1] . ( 5018 sec) [ -12892.9948] [ 2170] [depth= 1] . ( 5019 sec) [ -12891.6223] [ 2170] [depth= 7] . ( 5028 sec) [ -12891.6079] [ 2170] [depth= 1] . ( 5071 sec) [ -12891.4833] [ 2169] [depth= 1] . ( 5087 sec) [ -12891.4677] [ 2169] [depth= 1] . ( 5100 sec) [ -12891.4479] [ 2169] [depth= 1] . ( 5105 sec) [ -12877.1716] [Branch lengths ] . ( 5107 sec) [ -12876.9648] [Alpha ][ 0.728771] . ( 5114 sec) [ -12876.9155] [ 2169] [depth= 1] . ( 5353 sec) [ -12876.4549] [ 2168] [depth= 3] . ( 5542 sec) [ -12876.2229] [ 2167] [depth= 13] . ( 5551 sec) [ -12876.1835] [ 2167] [depth= 2] . ( 5553 sec) [ -12875.5073] [ 2167] [depth= 1] . ( 5575 sec) [ -12875.4162] [ 2167] [depth= 1] . ( 5578 sec) [ -12875.1435] [ 2167] [depth= 4] . ( 5621 sec) [ -12875.1303] [ 2167] [depth= 1] . ( 5628 sec) [ -12875.0809] [ 2167] [depth= 2] . ( 5793 sec) [ -12875.0701] [ 2167] [depth= 1] . ( 5795 sec) [ -12874.1049] [ 2167] [depth= 1] . ( 5804 sec) [ -12874.0917] [ 2168] [depth= 1] . ( 5809 sec) [ -12873.9343] [ 2168] [depth= 1] . ( 5825 sec) [ -12873.7674] [ 2168] [depth= 2] . ( 5883 sec) [ -12869.9810] [Branch lengths ] . ( 5886 sec) [ -12869.9718] [Alpha ][ 0.735084] . ( 5891 sec) [ -12869.9605] [ 2168] [depth= 1] . ( 6148 sec) [ -12869.9176] [ 2168] [depth= 3] . ( 6202 sec) [ -12868.4700] [ 2168] [depth= 7] . ( 6362 sec) [ -12867.2708] [ 2167] [depth= 8] . ( 6369 sec) [ -12867.2443] [ 2167] [depth= 1] . ( 6390 sec) [ -12867.1943] [ 2167] [depth= 2] . ( 6417 sec) [ -12867.1778] [ 2167] [depth= 1] . ( 6419 sec) [ -12867.1160] [ 2167] [depth= 1] . ( 6433 sec) [ -12867.0940] [ 2167] [depth= 1] . ( 6529 sec) [ -12866.4484] [ 2167] [depth= 1] . ( 6538 sec) [ -12865.9444] [ 2167] [depth= 1] . ( 6680 sec) [ -12864.9992] [ 2167] [depth= 1] . ( 6731 sec) [ -12864.9615] [ 2167] [depth= 1] . ( 6735 sec) [ -12862.9944] [Branch lengths ] . ( 6738 sec) [ -12862.9934] [Alpha ][ 0.737092] . ( 7637 sec) [ -12862.6528] [Branch lengths ] . ( 7638 sec) [ -12862.6528] [Topology ] . ( 7651 sec) [ -12862.3980] [Topology ] . ( 7663 sec) [ -12861.4719] [Topology ] . ( 7676 sec) [ -12859.7142] [Topology ] . ( 7689 sec) [ -12858.6257] [Topology ] . ( 7702 sec) [ -12858.1707] [Topology ] . ( 7715 sec) [ -12857.9908] [Topology ] . ( 7717 sec) [ -12857.9901] [Alpha ][ 0.738764] . ( 7718 sec) [ -12857.9901] [Topology ] . ( 7731 sec) [ -12857.9477] [Topology ] . ( 7744 sec) [ -12857.9364] [Topology ] . ( 7756 sec) [ -12857.9330] [Topology ] . ( 7769 sec) [ -12857.9318] [Topology ] . ( 7782 sec) [ -12857.9313] [Topology ] . ( 7784 sec) [ -12857.9313] [Alpha ][ 0.738764] . ( 7785 sec) [ -12857.9313] [Topology ] . ( 7798 sec) [ -12857.9312] [Topology ] . ( 7800 sec) [ -12857.9312] [Alpha ][ 0.738764] . Checking for NNIs, optimizing five branches... . ( 7896 sec) [ -12857.9311] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -13142.762463 . Log likelihood obtained after SPR moves : -12857.931052 . Log likelihood of the current tree: -12857.931052. . Printing the most likely tree in file 'proteic_M2624_139x348_2006.phy_phyml_tree.txt'... . Best log likelihood : -12841.590328 . Time used 2h13m11s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 33248.23user 0.00system 9:16:08elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps