.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2637_19x380_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : yes . Number of random starting trees : 5 . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 73 patterns found. (out of a total of 380 sites) . 334 sites without polymorphism (87.89%). . [Random start 1/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . This analysis requires at least 4Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -2205.4110] [Alpha ][ 0.500960] . ( 0 sec) [ -2152.2609] [ 122] [depth= 2] . ( 0 sec) [ -2039.2611] [ 119] [depth= 9] . ( 0 sec) [ -1986.5692] [ 119] [depth= 2] . ( 0 sec) [ -1984.2406] [ 117] [depth= 1] . ( 0 sec) [ -1981.0497] [ 117] [depth= 6] . ( 0 sec) [ -1969.9841] [ 116] [depth= 1] . ( 1 sec) [ -1968.3909] [ 115] [depth= 5] . ( 1 sec) [ -1967.1665] [ 116] [depth= 1] . ( 1 sec) [ -1937.7350] [ 110] [depth= 10] . ( 1 sec) [ -1925.4363] [ 109] [depth= 5] . ( 1 sec) [ -1894.8580] [ 107] [depth= 7] . ( 1 sec) [ -1871.5301] [ 103] [depth= 5] . ( 1 sec) [ -1861.5675] [ 100] [depth= 1] . ( 1 sec) [ -1852.4792] [ 98] [depth= 2] . ( 1 sec) [ -1838.9382] [ 98] [depth= 4] . ( 1 sec) [ -1799.4510] [ 95] [depth= 1] . ( 1 sec) [ -1775.1097] [ 90] [depth= 3] . ( 2 sec) [ -1733.9454] [ 83] [depth= 5] . ( 2 sec) [ -1731.5750] [ 83] [depth= 1] . ( 2 sec) [ -1696.2509] [ 75] [depth= 6] . ( 3 sec) [ -1685.7115] [ 75] [depth= 2] . ( 3 sec) [ -1679.7839] [ 74] [depth= 3] . ( 4 sec) [ -1672.9648] [ 74] [depth= 2] . ( 4 sec) [ -1671.2691] [ 74] [depth= 5] . ( 5 sec) [ -1658.3299] [ 72] [depth= 2] . ( 5 sec) [ -1655.8397] [ 72] [depth= 1] . ( 5 sec) [ -1647.5898] [ 72] [depth= 2] . ( 6 sec) [ -1646.4497] [ 72] [depth= 1] . ( 8 sec) [ -1646.2668] [ 72] [depth= 2] . ( 9 sec) [ -1646.1328] [ 72] [depth= 2] . ( 9 sec) [ -1645.5289] [ 72] [depth= 3] . ( 9 sec) [ -1636.9645] [Branch lengths ] . ( 9 sec) [ -1631.5849] [Alpha ][ 0.250961] . ( 13 sec) [ -1618.1066] [ 67] [depth= 1] . ( 16 sec) [ -1617.9502] [ 67] [depth= 1] . ( 16 sec) [ -1611.2828] [ 66] [depth= 2] . ( 21 sec) [ -1611.2683] [ 66] [depth= 1] . ( 24 sec) [ -1611.2303] [ 66] [depth= 1] . ( 36 sec) [ -1609.3875] [Branch lengths ] . ( 36 sec) [ -1607.3663] [Alpha ][ 0.125721] . ( 67 sec) [ -1607.2551] [Branch lengths ] . ( 67 sec) [ -1607.2551] [Topology ] . ( 68 sec) [ -1607.2544] [Topology ] . ( 68 sec) [ -1606.6879] [Alpha ][ 0.062981] . ( 68 sec) [ -1606.6879] [Topology ] . ( 68 sec) [ -1606.6876] [Topology ] . ( 68 sec) [ -1606.6354] [Alpha ][ 0.031545] . ( 68 sec) [ -1606.6354] [Topology ] . ( 69 sec) [ -1606.6354] [Topology ] . ( 69 sec) [ -1606.6349] [Alpha ][ 0.015791] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -1606.634851. . [Random start 2/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -2178.9410] [Alpha ][ 0.500960] . ( 0 sec) [ -2044.4891] [ 109] [depth= 3] . ( 0 sec) [ -2013.7102] [ 106] [depth= 1] . ( 0 sec) [ -2012.3241] [ 106] [depth= 1] . ( 0 sec) [ -2007.9105] [ 104] [depth= 3] . ( 0 sec) [ -2004.5600] [ 104] [depth= 1] . ( 0 sec) [ -1995.6850] [ 103] [depth= 3] . ( 0 sec) [ -1981.8355] [ 101] [depth= 3] . ( 1 sec) [ -1981.5572] [ 102] [depth= 2] . ( 1 sec) [ -1884.4764] [ 100] [depth= 4] . ( 1 sec) [ -1880.4407] [ 100] [depth= 1] . ( 1 sec) [ -1869.6813] [ 99] [depth= 2] . ( 1 sec) [ -1869.5219] [ 99] [depth= 2] . ( 1 sec) [ -1867.4581] [ 99] [depth= 2] . ( 1 sec) [ -1860.1154] [ 97] [depth= 1] . ( 1 sec) [ -1838.7725] [ 93] [depth= 2] . ( 1 sec) [ -1827.9245] [ 91] [depth= 1] . ( 1 sec) [ -1827.4012] [ 91] [depth= 5] . ( 2 sec) [ -1757.9484] [ 81] [depth= 2] . ( 3 sec) [ -1757.1025] [ 81] [depth= 1] . ( 3 sec) [ -1747.5880] [ 81] [depth= 1] . ( 3 sec) [ -1731.8891] [ 81] [depth= 1] . ( 3 sec) [ -1718.0549] [ 79] [depth= 2] . ( 3 sec) [ -1704.2038] [ 77] [depth= 1] . ( 3 sec) [ -1702.8514] [ 75] [depth= 1] . ( 4 sec) [ -1699.1380] [ 74] [depth= 1] . ( 4 sec) [ -1695.7711] [ 74] [depth= 3] . ( 4 sec) [ -1691.2316] [ 73] [depth= 3] . ( 6 sec) [ -1686.8377] [ 73] [depth= 1] . ( 7 sec) [ -1657.6712] [ 71] [depth= 1] . ( 7 sec) [ -1651.7646] [ 71] [depth= 1] . ( 7 sec) [ -1646.2961] [ 73] [depth= 1] . ( 7 sec) [ -1639.5107] [ 71] [depth= 2] . ( 8 sec) [ -1639.4908] [ 71] [depth= 1] . ( 9 sec) [ -1632.0358] [Branch lengths ] . ( 9 sec) [ -1627.1795] [Alpha ][ 0.250961] . ( 10 sec) [ -1610.3099] [ 66] [depth= 2] . ( 17 sec) [ -1609.0225] [ 66] [depth= 2] . ( 18 sec) [ -1608.0855] [ 66] [depth= 1] . ( 19 sec) [ -1607.9811] [ 66] [depth= 1] . ( 27 sec) [ -1607.9570] [ 66] [depth= 1] . ( 35 sec) [ -1606.9550] [Branch lengths ] . ( 35 sec) [ -1605.0772] [Alpha ][ 0.125721] . ( 65 sec) [ -1605.0717] [Branch lengths ] . ( 65 sec) [ -1605.0717] [Topology ] . ( 65 sec) [ -1605.0715] [Topology ] . ( 66 sec) [ -1604.5911] [Alpha ][ 0.062981] . ( 66 sec) [ -1604.5911] [Topology ] . ( 66 sec) [ -1604.5904] [Topology ] . ( 66 sec) [ -1604.5492] [Alpha ][ 0.031523] . ( 66 sec) [ -1604.5492] [Topology ] . ( 66 sec) [ -1604.5491] [Topology ] . ( 67 sec) [ -1604.5486] [Alpha ][ 0.015781] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -1604.548646. . [Random start 3/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -2232.8111] [Alpha ][ 0.500960] . ( 0 sec) [ -2188.6707] [ 122] [depth= 8] . ( 0 sec) [ -2163.1581] [ 118] [depth= 2] . ( 0 sec) [ -2139.8101] [ 118] [depth= 4] . ( 0 sec) [ -2126.8591] [ 117] [depth= 1] . ( 0 sec) [ -2108.4369] [ 117] [depth= 2] . ( 0 sec) [ -2062.8686] [ 116] [depth= 5] . ( 0 sec) [ -1973.4764] [ 119] [depth= 3] . ( 0 sec) [ -1924.4195] [ 113] [depth= 4] . ( 0 sec) [ -1871.2768] [ 110] [depth= 9] . ( 0 sec) [ -1852.6446] [ 108] [depth= 1] . ( 1 sec) [ -1848.5108] [ 108] [depth= 6] . ( 2 sec) [ -1842.9616] [ 106] [depth= 3] . ( 2 sec) [ -1803.9055] [ 99] [depth= 7] . ( 4 sec) [ -1792.7750] [ 98] [depth= 4] . ( 4 sec) [ -1778.0405] [ 96] [depth= 1] . ( 4 sec) [ -1750.1488] [ 91] [depth= 4] . ( 4 sec) [ -1747.7859] [ 90] [depth= 7] . ( 4 sec) [ -1743.8975] [ 90] [depth= 2] . ( 4 sec) [ -1741.1605] [ 89] [depth= 1] . ( 6 sec) [ -1740.4526] [ 89] [depth= 1] . ( 6 sec) [ -1725.8803] [ 86] [depth= 1] . ( 8 sec) [ -1677.0296] [ 79] [depth= 10] . ( 8 sec) [ -1670.4304] [ 77] [depth= 5] . ( 8 sec) [ -1666.8563] [ 76] [depth= 2] . ( 9 sec) [ -1659.4272] [ 74] [depth= 3] . ( 9 sec) [ -1635.2983] [ 69] [depth= 4] . ( 9 sec) [ -1634.9498] [ 68] [depth= 1] . ( 9 sec) [ -1634.2157] [ 68] [depth= 1] . ( 9 sec) [ -1632.5450] [ 68] [depth= 1] . ( 9 sec) [ -1628.5284] [ 67] [depth= 1] . ( 9 sec) [ -1628.4891] [ 67] [depth= 1] . ( 9 sec) [ -1621.5618] [ 67] [depth= 1] . ( 12 sec) [ -1615.4031] [Branch lengths ] . ( 12 sec) [ -1611.7423] [Alpha ][ 0.250961] . ( 14 sec) [ -1611.7252] [ 66] [depth= 2] . ( 17 sec) [ -1611.5837] [ 66] [depth= 2] . ( 17 sec) [ -1610.0602] [ 66] [depth= 2] . ( 20 sec) [ -1608.9427] [ 66] [depth= 2] . ( 21 sec) [ -1607.3269] [ 66] [depth= 1] . ( 38 sec) [ -1606.9550] [Branch lengths ] . ( 38 sec) [ -1605.0766] [Alpha ][ 0.125721] . ( 69 sec) [ -1605.0716] [Branch lengths ] . ( 69 sec) [ -1605.0716] [Topology ] . ( 70 sec) [ -1605.0714] [Topology ] . ( 70 sec) [ -1604.5911] [Alpha ][ 0.062981] . ( 70 sec) [ -1604.5911] [Topology ] . ( 70 sec) [ -1604.5904] [Topology ] . ( 70 sec) [ -1604.5492] [Alpha ][ 0.031523] . ( 70 sec) [ -1604.5492] [Topology ] . ( 71 sec) [ -1604.5490] [Topology ] . ( 71 sec) [ -1604.5486] [Alpha ][ 0.015781] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -1604.548604. . [Random start 4/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -1998.9972] [Alpha ][ 0.500960] . ( 0 sec) [ -1964.4925] [ 106] [depth= 6] . ( 0 sec) [ -1934.2252] [ 102] [depth= 4] . ( 0 sec) [ -1927.4587] [ 103] [depth= 1] . ( 0 sec) [ -1904.5559] [ 98] [depth= 4] . ( 0 sec) [ -1890.9752] [ 98] [depth= 2] . ( 1 sec) [ -1886.1615] [ 103] [depth= 4] . ( 1 sec) [ -1877.8689] [ 102] [depth= 3] . ( 1 sec) [ -1873.7369] [ 102] [depth= 4] . ( 2 sec) [ -1868.6834] [ 100] [depth= 3] . ( 2 sec) [ -1867.8312] [ 100] [depth= 1] . ( 2 sec) [ -1863.4948] [ 100] [depth= 1] . ( 2 sec) [ -1855.9755] [ 98] [depth= 6] . ( 2 sec) [ -1840.4259] [ 96] [depth= 2] . ( 2 sec) [ -1835.9561] [ 94] [depth= 1] . ( 2 sec) [ -1831.6817] [ 95] [depth= 1] . ( 2 sec) [ -1812.1525] [ 93] [depth= 4] . ( 2 sec) [ -1791.5943] [ 90] [depth= 9] . ( 2 sec) [ -1771.7012] [ 86] [depth= 2] . ( 2 sec) [ -1767.1845] [ 85] [depth= 2] . ( 2 sec) [ -1737.3084] [ 83] [depth= 6] . ( 2 sec) [ -1723.6959] [ 81] [depth= 1] . ( 3 sec) [ -1715.8130] [ 80] [depth= 2] . ( 4 sec) [ -1705.4586] [ 81] [depth= 1] . ( 4 sec) [ -1684.6022] [ 77] [depth= 2] . ( 4 sec) [ -1683.3451] [ 77] [depth= 3] . ( 4 sec) [ -1648.6133] [ 72] [depth= 3] . ( 4 sec) [ -1636.6331] [ 72] [depth= 1] . ( 4 sec) [ -1634.7090] [ 72] [depth= 2] . ( 4 sec) [ -1634.4598] [ 72] [depth= 1] . ( 5 sec) [ -1632.8386] [ 72] [depth= 4] . ( 5 sec) [ -1632.5703] [ 71] [depth= 1] . ( 5 sec) [ -1632.5484] [ 72] [depth= 1] . ( 10 sec) [ -1632.4834] [ 72] [depth= 1] . ( 10 sec) [ -1617.6638] [ 67] [depth= 2] . ( 10 sec) [ -1617.3422] [Branch lengths ] . ( 10 sec) [ -1613.5873] [Alpha ][ 0.250961] . ( 12 sec) [ -1611.7155] [ 66] [depth= 2] . ( 25 sec) [ -1610.4538] [ 66] [depth= 2] . ( 27 sec) [ -1609.3953] [ 66] [depth= 1] . ( 30 sec) [ -1609.3797] [ 66] [depth= 1] . ( 36 sec) [ -1609.2781] [Branch lengths ] . ( 36 sec) [ -1607.2630] [Alpha ][ 0.125721] . ( 67 sec) [ -1607.2544] [Branch lengths ] . ( 67 sec) [ -1607.2544] [Topology ] . ( 68 sec) [ -1607.2542] [Topology ] . ( 68 sec) [ -1606.6876] [Alpha ][ 0.062981] . ( 68 sec) [ -1606.6876] [Topology ] . ( 68 sec) [ -1606.6873] [Topology ] . ( 68 sec) [ -1606.6352] [Alpha ][ 0.031545] . ( 68 sec) [ -1606.6352] [Topology ] . ( 69 sec) [ -1606.6351] [Topology ] . ( 69 sec) [ -1606.6346] [Alpha ][ 0.015791] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -1606.634597. . [Random start 5/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -2200.9051] [Alpha ][ 0.500960] . ( 1 sec) [ -2179.2718] [ 124] [depth= 6] . ( 1 sec) [ -2141.0397] [ 118] [depth= 7] . ( 1 sec) [ -2133.8430] [ 117] [depth= 1] . ( 1 sec) [ -2091.7951] [ 117] [depth= 2] . ( 1 sec) [ -2077.5251] [ 116] [depth= 1] . ( 1 sec) [ -2073.1183] [ 115] [depth= 4] . ( 1 sec) [ -2013.4130] [ 105] [depth= 1] . ( 1 sec) [ -1971.8984] [ 103] [depth= 2] . ( 1 sec) [ -1965.0760] [ 100] [depth= 1] . ( 1 sec) [ -1938.1015] [ 97] [depth= 5] . ( 1 sec) [ -1927.4622] [ 96] [depth= 6] . ( 1 sec) [ -1897.2309] [ 95] [depth= 2] . ( 2 sec) [ -1888.3945] [ 96] [depth= 7] . ( 2 sec) [ -1775.0409] [ 93] [depth= 1] . ( 2 sec) [ -1774.5586] [ 93] [depth= 5] . ( 2 sec) [ -1759.0950] [ 91] [depth= 2] . ( 2 sec) [ -1733.2387] [ 86] [depth= 2] . ( 2 sec) [ -1723.6484] [ 84] [depth= 8] . ( 3 sec) [ -1723.2479] [ 84] [depth= 3] . ( 3 sec) [ -1693.0108] [ 78] [depth= 4] . ( 4 sec) [ -1665.0131] [ 73] [depth= 9] . ( 4 sec) [ -1654.4774] [ 72] [depth= 2] . ( 4 sec) [ -1648.7376] [ 71] [depth= 1] . ( 5 sec) [ -1644.1888] [ 71] [depth= 4] . ( 6 sec) [ -1637.2058] [ 69] [depth= 1] . ( 6 sec) [ -1632.8926] [ 68] [depth= 2] . ( 6 sec) [ -1631.2724] [ 68] [depth= 1] . ( 7 sec) [ -1630.8003] [ 68] [depth= 6] . ( 7 sec) [ -1629.1850] [ 68] [depth= 1] . ( 8 sec) [ -1628.6587] [ 68] [depth= 1] . ( 8 sec) [ -1623.7151] [ 67] [depth= 2] . ( 10 sec) [ -1623.0606] [ 67] [depth= 1] . ( 10 sec) [ -1614.9820] [ 66] [depth= 3] . ( 11 sec) [ -1614.6773] [ 66] [depth= 1] . ( 11 sec) [ -1614.6606] [ 66] [depth= 1] . ( 11 sec) [ -1612.2774] [Branch lengths ] . ( 11 sec) [ -1608.8047] [Alpha ][ 0.250961] . ( 15 sec) [ -1608.7939] [ 66] [depth= 1] . ( 16 sec) [ -1608.7712] [ 66] [depth= 1] . ( 40 sec) [ -1607.0679] [Branch lengths ] . ( 40 sec) [ -1605.1921] [Alpha ][ 0.125721] . ( 71 sec) [ -1605.0720] [Branch lengths ] . ( 71 sec) [ -1605.0720] [Topology ] . ( 71 sec) [ -1605.0715] [Topology ] . ( 71 sec) [ -1604.5910] [Alpha ][ 0.062981] . ( 71 sec) [ -1604.5910] [Topology ] . ( 72 sec) [ -1604.5904] [Topology ] . ( 72 sec) [ -1604.5492] [Alpha ][ 0.031523] . ( 72 sec) [ -1604.5492] [Topology ] . ( 72 sec) [ -1604.5490] [Topology ] . ( 72 sec) [ -1604.5486] [Alpha ][ 0.015781] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -1604.548598. . Computing pairwise distances... . Building BioNJ tree... . Maximizing likelihood (using NNI moves)... . ( 0 sec) [ -1616.6479] [Alpha ][ 0.500960] . ( 0 sec) [ -1616.6479] [Topology ] . ( 0 sec) [ -1613.6198] [Topology ] . ( 1 sec) [ -1613.1692] [Topology ] . ( 1 sec) [ -1613.0031] [Topology ] . ( 2 sec) [ -1612.8750] [Topology ] . ( 2 sec) [ -1612.7126] [Topology ] . ( 2 sec) [ -1612.4940] [Topology ] . Checking for NNIs, optimizing five branches... . ( 6 sec) [ -1609.1034] [Alpha ][ 0.250961] . ( 6 sec) [ -1609.1034] [Topology ] . ( 6 sec) [ -1608.9583] [Topology ] . ( 6 sec) [ -1608.9268] [Topology ] . ( 7 sec) [ -1608.9202] [Topology ] . ( 7 sec) [ -1608.9188] [Topology ] . ( 7 sec) [ -1608.9185] [Topology ] . Checking for NNIs, optimizing five branches... . ( 10 sec) [ -1607.0474] [Alpha ][ 0.125721] . ( 10 sec) [ -1607.0474] [Topology ] . ( 11 sec) [ -1607.0420] [Topology ] . ( 11 sec) [ -1607.0411] [Topology ] . Checking for NNIs, optimizing five branches... . ( 14 sec) [ -1606.5621] [Alpha ][ 0.062981] . ( 14 sec) [ -1606.5621] [Topology ] . ( 15 sec) [ -1606.5613] [Topology ] . Checking for NNIs, optimizing five branches... . ( 18 sec) [ -1606.5202] [Alpha ][ 0.031523] . ( 18 sec) [ -1606.5202] [Topology ] . ( 18 sec) [ -1606.5201] [Topology ] . Checking for NNIs, optimizing five branches... . ( 21 sec) [ -1606.5197] [Alpha ][ 0.015781] . ( 22 sec) [ -1606.5197] [Topology ] . ( 22 sec) [ -1606.5196] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 28 sec) [ -1616.6479] [Alpha ][ 0.500960] . ( 28 sec) [ -1616.6311] [ 66] [depth= 1] . ( 35 sec) [ -1615.9575] [ 66] [depth= 1] . ( 43 sec) [ -1615.0883] [ 66] [depth= 1] . ( 43 sec) [ -1614.9545] [ 66] [depth= 1] . ( 44 sec) [ -1614.8130] [ 66] [depth= 1] . ( 44 sec) [ -1614.8023] [ 66] [depth= 1] . ( 44 sec) [ -1614.1343] [ 66] [depth= 2] . ( 44 sec) [ -1613.7087] [ 66] [depth= 1] . ( 45 sec) [ -1613.6627] [ 66] [depth= 1] . ( 46 sec) [ -1612.3773] [ 66] [depth= 2] . ( 47 sec) [ -1611.5288] [ 66] [depth= 1] . ( 47 sec) [ -1611.4009] [ 66] [depth= 1] . ( 47 sec) [ -1610.3854] [Branch lengths ] . ( 48 sec) [ -1606.9802] [Alpha ][ 0.250961] . ( 78 sec) [ -1606.9552] [Branch lengths ] . ( 78 sec) [ -1606.9552] [Topology ] . ( 78 sec) [ -1606.9547] [Topology ] . ( 78 sec) [ -1605.0786] [Alpha ][ 0.125721] . ( 78 sec) [ -1605.0786] [Topology ] . ( 78 sec) [ -1605.0726] [Topology ] . ( 79 sec) [ -1605.0715] [Topology ] . ( 79 sec) [ -1605.0713] [Topology ] . ( 79 sec) [ -1604.5908] [Alpha ][ 0.062981] . ( 79 sec) [ -1604.5908] [Topology ] . ( 80 sec) [ -1604.5901] [Topology ] . ( 80 sec) [ -1604.5489] [Alpha ][ 0.031523] . ( 80 sec) [ -1604.5489] [Topology ] . ( 80 sec) [ -1604.5488] [Topology ] . ( 80 sec) [ -1604.5484] [Alpha ][ 0.015781] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -1606.519637 . Log likelihood obtained after SPR moves : -1604.548384 . Log likelihood of the current tree: -1604.548384. . Printing the most likely tree in file 'proteic_M2637_19x380_2006.phy_phyml_tree.txt'... . Best log likelihood : -1604.548384 . Time used 0h1m23s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 441.02user 0.00system 7:26.73elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps