..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M2558_27x1060_2005.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Compute approximate likelihood ratio test : 	 yes (SH-like branch supports)
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 no
                . Evaluted tree : 				 file "user tree (RAxML_result.proteic_M2558_27x1060_2005.phy_RAXML_CAT)"
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 746 patterns found. (out of a total of 1060 sites) 

. 362 sites without polymorphism (34.15%).

. Reading tree...

. This analysis requires at least 47Mo of memory space.

. (    2 sec) [    -37268.4175] [Branch lengths     ]
. (    3 sec) [    -37205.9020] [Alpha              ][  0.653928]
. (    5 sec) [    -37195.3603] [Branch lengths     ]
. (    5 sec) [    -37194.3097] [Alpha              ][  0.620180]
. (    8 sec) [    -37190.9866] [Branch lengths     ]
. (    9 sec) [    -37190.3903] [Alpha              ][  0.595872]
. (   10 sec) [    -37188.8764] [Branch lengths     ]
. (   11 sec) [    -37188.5009] [Alpha              ][  0.577305]
. (   13 sec) [    -37187.5993] [Branch lengths     ]
. (   14 sec) [    -37187.3568] [Alpha              ][  0.562886]
. (   16 sec) [    -37186.8843] [Branch lengths     ]
. (   17 sec) [    -37186.7465] [Alpha              ][  0.552365]
. (   18 sec) [    -37186.4704] [Branch lengths     ]
. (   19 sec) [    -37186.3841] [Alpha              ][  0.544272]
. (   21 sec) [    -37186.2375] [Branch lengths     ]
. (   22 sec) [    -37186.1882] [Alpha              ][  0.537805]
. (   23 sec) [    -37186.0950] [Branch lengths     ]
. (   24 sec) [    -37186.0676] [Alpha              ][  0.533018]
. (   26 sec) [    -37186.0165] [Branch lengths     ]
. (   27 sec) [    -37186.0015] [Alpha              ][  0.529489]
. (   29 sec) [    -37185.9711] [Branch lengths     ]
. (   30 sec) [    -37185.9622] [Alpha              ][  0.526781]
. (   31 sec) [    -37185.9456] [Branch lengths     ]
. (   32 sec) [    -37185.9407] [Alpha              ][  0.524759]
. (   34 sec) [    -37185.9308] [Branch lengths     ]
. (   35 sec) [    -37185.9279] [Alpha              ][  0.523194]
. (   37 sec) [    -37185.9225] [Branch lengths     ]
. (   37 sec) [    -37185.9209] [Alpha              ][  0.522034]
. (   39 sec) [    -37185.9177] [Branch lengths     ]
. (   40 sec) [    -37185.9168] [Alpha              ][  0.521146]
. (   42 sec) [    -37185.9150] [Branch lengths     ]
. (   42 sec) [    -37185.9146] [Alpha              ][  0.520482]
. (   44 sec) [    -37185.9135] [Branch lengths     ]
. (   45 sec) [    -37185.9132] [Alpha              ][  0.519961]
. (   47 sec) [    -37185.9126] [Branch lengths     ]
. (   47 sec) [    -37185.9126] [Alpha              ][  0.519441]
. (   48 sec) [    -37185.9126] [Alpha              ][  0.519441]
. Log likelihood of the current tree: -37185.912559.

. Compute aLRT branch supports on the most likely tree...

. Printing the most likely tree in file 'proteic_M2558_27x1060_2005.phy_phyml_tree.txt'...


. Time used 0h1m33s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
java.lang.NullPointerException
	at java.io.FileInputStream.<init>(FileInputStream.java:103)
	at java.io.FileReader.<init>(FileReader.java:55)
	at Recomp.<init>(Recomp.java:114)
	at Recomp.main(Recomp.java:52)