You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008 Alignment has 780 distinct alignment patterns Proportion of gaps and completely undetermined characters in this alignment: 0.193425 RAxML rapid hill-climbing mode Executing 1 inference on the original alignment using a distinct randomized MP tree All free model parameters will be estimated by RAxML GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units Partition: 0 Name: No Name Provided DataType: DNA Substitution Matrix: GTR Empirical Base Frequencies: pi(A): 0.205134 pi(C): 0.264057 pi(G): 0.318827 pi(T): 0.211983 4.558699 -20585.552484 9.859468 -20566.061243 25.645887 -20560.643387 53.256570 -20559.791148 91.388903 -20449.748258 116.740530 -20414.518605 146.263509 -20408.415319 176.178114 -20404.799063 205.302973 -20403.926840 233.664542 -20403.717625 264.892105 -20403.624246 302.271965 -20403.535806 352.086868 -20403.450921 391.601106 -20403.450921 413.326025 -20395.854605 Overall Time for 1 Inference 413.353318 Likelihood : -20395.854605 Parsimony starting tree written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2564_142x1130_2006.phy_RAXML Final tree written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2564_142x1130_2006.phy_RAXML Execution Log File written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2564_142x1130_2006.phy_RAXML Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2564_142x1130_2006.phy_RAXML