IMPORTANT WARNING: Alignment column 782 contains only undetermined values which will be treated as missing data


IMPORTANT WARNING: Sequences tax51 and tax53 are exactly identical

IMPORTANT WARNING
Found 1 sequence that is exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.


IMPORTANT WARNING
Found 1 column that contains only undetermined values which will be treated as missing data.
Normally these columns should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates and undetermined columns removed is printed to file /auto/dufayard/res/ori_nucl_raxml/nucleic_M2566_73x918_2006.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 541 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.107142

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.249641 pi(C): 0.229518 pi(G): 0.310559 pi(T): 0.210282



1.610765 -12161.545555
3.410469 -12133.083394
8.689450 -12130.509938
16.527805 -12045.191683
22.399885 -12026.713483
29.696527 -12023.219132
38.545126 -12022.434715
48.322647 -12022.229086
57.958264 -12022.137687
61.799116 -12022.137687
69.680337 -12000.975162


Overall Time for 1 Inference 69.701864
Likelihood   : -12000.975162


Parsimony starting tree written to:    /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2566_73x918_2006.phy_RAXML
Final tree written to:                 /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2566_73x918_2006.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2566_73x918_2006.phy_RAXML
Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2566_73x918_2006.phy_RAXML