IMPORTANT WARNING: Alignment column 28 contains only undetermined values which will be treated as missing data


IMPORTANT WARNING: Sequences tax8 and tax9 are exactly identical


IMPORTANT WARNING: Sequences tax15 and tax16 are exactly identical


IMPORTANT WARNING: Sequences tax17 and tax24 are exactly identical


IMPORTANT WARNING: Sequences tax18 and tax19 are exactly identical

IMPORTANT WARNING
Found 4 sequences that are exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.


IMPORTANT WARNING
Found 1 column that contains only undetermined values which will be treated as missing data.
Normally these columns should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates and undetermined columns removed is printed to file /auto/dufayard/res/ori_nucl_raxml/nucleic_M2567_64x1044_2006.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 408 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.020055

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.266861 pi(C): 0.211986 pi(G): 0.258171 pi(T): 0.262982



0.732991 -6852.882969
1.946578 -6847.361379
5.296618 -6819.979443
8.190914 -6813.084786
12.062429 -6811.638329
15.424946 -6811.316598
19.902523 -6811.221607
25.062290 -6810.678259
30.120054 -6810.384063
33.515537 -6810.384063
38.684983 -6792.488500


Overall Time for 1 Inference 38.700764
Likelihood   : -6792.488500


Parsimony starting tree written to:    /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2567_64x1044_2006.phy_RAXML
Final tree written to:                 /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2567_64x1044_2006.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2567_64x1044_2006.phy_RAXML
Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2567_64x1044_2006.phy_RAXML