IMPORTANT WARNING: Sequences tax1 and tax3 are exactly identical IMPORTANT WARNING: Sequences tax1 and tax159 are exactly identical IMPORTANT WARNING: Sequences tax1 and tax169 are exactly identical IMPORTANT WARNING: Sequences tax1 and tax171 are exactly identical IMPORTANT WARNING: Sequences tax1 and tax172 are exactly identical IMPORTANT WARNING: Sequences tax1 and tax173 are exactly identical IMPORTANT WARNING: Sequences tax1 and tax174 are exactly identical IMPORTANT WARNING: Sequences tax1 and tax175 are exactly identical IMPORTANT WARNING: Sequences tax1 and tax177 are exactly identical IMPORTANT WARNING: Sequences tax1 and tax178 are exactly identical IMPORTANT WARNING: Sequences tax1 and tax182 are exactly identical IMPORTANT WARNING: Sequences tax1 and tax183 are exactly identical IMPORTANT WARNING: Sequences tax1 and tax186 are exactly identical IMPORTANT WARNING: Sequences tax1 and tax189 are exactly identical IMPORTANT WARNING: Sequences tax1 and tax190 are exactly identical IMPORTANT WARNING: Sequences tax2 and tax160 are exactly identical IMPORTANT WARNING: Sequences tax2 and tax168 are exactly identical IMPORTANT WARNING: Sequences tax2 and tax170 are exactly identical IMPORTANT WARNING: Sequences tax2 and tax179 are exactly identical IMPORTANT WARNING: Sequences tax2 and tax180 are exactly identical IMPORTANT WARNING: Sequences tax2 and tax188 are exactly identical IMPORTANT WARNING: Sequences tax4 and tax5 are exactly identical IMPORTANT WARNING: Sequences tax4 and tax8 are exactly identical IMPORTANT WARNING: Sequences tax4 and tax162 are exactly identical IMPORTANT WARNING: Sequences tax4 and tax163 are exactly identical IMPORTANT WARNING: Sequences tax4 and tax166 are exactly identical IMPORTANT WARNING: Sequences tax4 and tax167 are exactly identical IMPORTANT WARNING: Sequences tax4 and tax185 are exactly identical IMPORTANT WARNING: Sequences tax4 and tax187 are exactly identical IMPORTANT WARNING: Sequences tax6 and tax7 are exactly identical IMPORTANT WARNING: Sequences tax6 and tax176 are exactly identical IMPORTANT WARNING: Sequences tax6 and tax184 are exactly identical IMPORTANT WARNING: Sequences tax6 and tax191 are exactly identical IMPORTANT WARNING: Sequences tax14 and tax17 are exactly identical IMPORTANT WARNING: Sequences tax15 and tax16 are exactly identical IMPORTANT WARNING: Sequences tax15 and tax18 are exactly identical IMPORTANT WARNING: Sequences tax15 and tax20 are exactly identical IMPORTANT WARNING: Sequences tax15 and tax21 are exactly identical IMPORTANT WARNING: Sequences tax15 and tax22 are exactly identical IMPORTANT WARNING: Sequences tax15 and tax23 are exactly identical IMPORTANT WARNING: Sequences tax15 and tax24 are exactly identical IMPORTANT WARNING: Sequences tax27 and tax28 are exactly identical IMPORTANT WARNING: Sequences tax29 and tax30 are exactly identical IMPORTANT WARNING: Sequences tax29 and tax34 are exactly identical IMPORTANT WARNING: Sequences tax31 and tax32 are exactly identical IMPORTANT WARNING: Sequences tax31 and tax35 are exactly identical IMPORTANT WARNING: Sequences tax36 and tax37 are exactly identical IMPORTANT WARNING: Sequences tax39 and tax40 are exactly identical IMPORTANT WARNING: Sequences tax47 and tax48 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax53 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax54 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax56 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax58 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax61 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax62 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax63 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax65 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax66 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax67 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax69 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax73 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax74 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax75 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax76 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax78 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax81 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax82 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax83 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax84 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax85 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax86 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax87 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax88 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax89 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax91 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax92 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax93 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax94 are exactly identical IMPORTANT WARNING: Sequences tax52 and tax95 are exactly identical IMPORTANT WARNING: Sequences tax59 and tax60 are exactly identical IMPORTANT WARNING: Sequences tax59 and tax64 are exactly identical IMPORTANT WARNING: Sequences tax59 and tax70 are exactly identical IMPORTANT WARNING: Sequences tax59 and tax71 are exactly identical IMPORTANT WARNING: Sequences tax59 and tax72 are exactly identical IMPORTANT WARNING: Sequences tax77 and tax79 are exactly identical IMPORTANT WARNING: Sequences tax77 and tax80 are exactly identical IMPORTANT WARNING: Sequences tax96 and tax97 are exactly identical IMPORTANT WARNING: Sequences tax98 and tax99 are exactly identical IMPORTANT WARNING: Sequences tax98 and tax100 are exactly identical IMPORTANT WARNING: Sequences tax98 and tax101 are exactly identical IMPORTANT WARNING: Sequences tax98 and tax105 are exactly identical IMPORTANT WARNING: Sequences tax102 and tax103 are exactly identical IMPORTANT WARNING: Sequences tax102 and tax104 are exactly identical IMPORTANT WARNING: Sequences tax102 and tax106 are exactly identical IMPORTANT WARNING: Sequences tax110 and tax133 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax114 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax115 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax116 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax117 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax118 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax119 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax120 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax121 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax122 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax123 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax124 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax125 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax126 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax127 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax128 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax129 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax130 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax131 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax134 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax136 are exactly identical IMPORTANT WARNING: Sequences tax113 and tax137 are exactly identical IMPORTANT WARNING: Sequences tax139 and tax142 are exactly identical IMPORTANT WARNING: Sequences tax143 and tax144 are exactly identical IMPORTANT WARNING: Sequences tax143 and tax145 are exactly identical IMPORTANT WARNING: Sequences tax143 and tax146 are exactly identical IMPORTANT WARNING: Sequences tax143 and tax147 are exactly identical IMPORTANT WARNING: Sequences tax143 and tax148 are exactly identical IMPORTANT WARNING: Sequences tax143 and tax149 are exactly identical IMPORTANT WARNING: Sequences tax150 and tax151 are exactly identical IMPORTANT WARNING: Sequences tax150 and tax152 are exactly identical IMPORTANT WARNING: Sequences tax150 and tax154 are exactly identical IMPORTANT WARNING: Sequences tax150 and tax155 are exactly identical IMPORTANT WARNING: Sequences tax150 and tax156 are exactly identical IMPORTANT WARNING: Sequences tax150 and tax157 are exactly identical IMPORTANT WARNING Found 129 sequences that are exactly identical to other sequences in the alignment. Normally they should be excluded from the analysis. Just in case you might need it, an alignment file with sequence duplicates removed is printed to file /auto/dufayard/res/ori_nucl_raxml/nucleic_M2572_191x990_2006.phy.reduced You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008 Alignment has 285 distinct alignment patterns Proportion of gaps and completely undetermined characters in this alignment: 0.130742 RAxML rapid hill-climbing mode Executing 1 inference on the original alignment using a distinct randomized MP tree All free model parameters will be estimated by RAxML GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units Partition: 0 Name: No Name Provided DataType: DNA Substitution Matrix: GTR Empirical Base Frequencies: pi(A): 0.353545 pi(C): 0.137001 pi(G): 0.171748 pi(T): 0.337706 1.757693 -3519.287147 3.844913 -3519.287082 11.100864 -3514.877991 14.528842 -3513.164094 21.253471 -3512.218972 29.477205 -3511.879532 41.986075 -3511.783113 52.959393 -3511.783113 60.337939 -3508.502805 Overall Time for 1 Inference 60.356075 Likelihood : -3508.502805 Parsimony starting tree written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2572_191x990_2006.phy_RAXML Final tree written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2572_191x990_2006.phy_RAXML Execution Log File written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2572_191x990_2006.phy_RAXML Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2572_191x990_2006.phy_RAXML