You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008 Alignment has 1192 distinct alignment patterns Proportion of gaps and completely undetermined characters in this alignment: 0.450320 RAxML rapid hill-climbing mode Executing 1 inference on the original alignment using a distinct randomized MP tree All free model parameters will be estimated by RAxML GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units Partition: 0 Name: No Name Provided DataType: DNA Substitution Matrix: GTR Empirical Base Frequencies: pi(A): 0.298460 pi(C): 0.173848 pi(G): 0.197950 pi(T): 0.329742 5.835374 -16119.936536 11.934151 -16100.089331 27.538121 -16085.508204 53.926637 -16083.957139 91.812246 -16025.187389 123.706928 -16002.533368 155.238227 -15986.274305 187.696464 -15980.172258 214.162864 -15979.969143 250.345067 -15979.872525 287.391072 -15979.781489 343.361263 -15979.692914 396.990616 -15979.692914 423.838158 -15969.145184 Overall Time for 1 Inference 423.856207 Likelihood : -15969.145184 Parsimony starting tree written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2587_117x1910_2006.phy_RAXML Final tree written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2587_117x1910_2006.phy_RAXML Execution Log File written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2587_117x1910_2006.phy_RAXML Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2587_117x1910_2006.phy_RAXML