IMPORTANT WARNING: Sequences tax2 and tax6 are exactly identical


IMPORTANT WARNING: Sequences tax2 and tax13 are exactly identical


IMPORTANT WARNING: Sequences tax2 and tax53 are exactly identical


IMPORTANT WARNING: Sequences tax2 and tax63 are exactly identical


IMPORTANT WARNING: Sequences tax3 and tax9 are exactly identical


IMPORTANT WARNING: Sequences tax3 and tax57 are exactly identical


IMPORTANT WARNING: Sequences tax5 and tax45 are exactly identical


IMPORTANT WARNING: Sequences tax5 and tax54 are exactly identical


IMPORTANT WARNING: Sequences tax5 and tax58 are exactly identical


IMPORTANT WARNING: Sequences tax5 and tax59 are exactly identical


IMPORTANT WARNING: Sequences tax8 and tax49 are exactly identical


IMPORTANT WARNING: Sequences tax11 and tax55 are exactly identical


IMPORTANT WARNING: Sequences tax24 and tax27 are exactly identical


IMPORTANT WARNING: Sequences tax24 and tax28 are exactly identical


IMPORTANT WARNING: Sequences tax24 and tax33 are exactly identical


IMPORTANT WARNING: Sequences tax36 and tax38 are exactly identical


IMPORTANT WARNING: Sequences tax36 and tax39 are exactly identical


IMPORTANT WARNING: Sequences tax41 and tax42 are exactly identical


IMPORTANT WARNING: Sequences tax41 and tax47 are exactly identical


IMPORTANT WARNING: Sequences tax46 and tax50 are exactly identical


IMPORTANT WARNING: Sequences tax46 and tax52 are exactly identical


IMPORTANT WARNING: Sequences tax46 and tax62 are exactly identical


IMPORTANT WARNING: Sequences tax46 and tax66 are exactly identical

IMPORTANT WARNING
Found 23 sequences that are exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates removed is printed to file /auto/dufayard/res/ori_nucl_raxml/nucleic_M2599_66x1137_2006.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 131 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.107806

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.304800 pi(C): 0.189882 pi(G): 0.198142 pi(T): 0.307175



0.170547 -2168.043943
0.486003 -2168.043488
1.297635 -2167.056616
1.951425 -2166.773236
2.845157 -2165.583430
3.720115 -2165.511216
4.501672 -2165.451026
5.590371 -2165.398013
6.122235 -2165.398013
6.910141 -2163.392889


Overall Time for 1 Inference 6.925351
Likelihood   : -2163.392889


Parsimony starting tree written to:    /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2599_66x1137_2006.phy_RAXML
Final tree written to:                 /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2599_66x1137_2006.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2599_66x1137_2006.phy_RAXML
Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2599_66x1137_2006.phy_RAXML