IMPORTANT WARNING: Sequences tax106 and tax108 are exactly identical

IMPORTANT WARNING
Found 1 sequence that is exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates removed is printed to file /auto/dufayard/res/ori_nucl_raxml/nucleic_M2623_139x1044_2006.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 959 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.260130

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.280146 pi(C): 0.226629 pi(G): 0.220059 pi(T): 0.273165



12.807598 -46608.192763
18.822098 -46364.988432
36.969334 -46315.288554
73.578052 -46299.631435
128.214723 -46011.941855
164.121561 -45939.880149
210.961218 -45926.995170
256.540860 -45922.346870
300.991517 -45916.077852
344.177580 -45914.022531
386.134809 -45913.207193
425.808575 -45913.003111
474.074948 -45912.906452
563.953647 -45912.812077
633.072700 -45912.812077
673.423462 -45868.310544


Overall Time for 1 Inference 673.457052
Likelihood   : -45868.310544


Parsimony starting tree written to:    /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2623_139x1044_2006.phy_RAXML
Final tree written to:                 /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2623_139x1044_2006.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2623_139x1044_2006.phy_RAXML
Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2623_139x1044_2006.phy_RAXML