IMPORTANT WARNING: Sequences tax26 and tax27 are exactly identical


IMPORTANT WARNING: Sequences tax41 and tax42 are exactly identical

IMPORTANT WARNING
Found 2 sequences that are exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates removed is printed to file /auto/dufayard/res/ori_nucl_raxml/nucleic_M2627_54x1915_2006.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 1299 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.104516

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.338821 pi(C): 0.293741 pi(G): 0.126068 pi(T): 0.241370



2.967869 -35371.160751
6.002025 -35365.229793
15.001306 -35300.292204
27.950143 -35287.394293
44.437499 -35283.783503
60.922647 -35282.020885
78.519929 -35281.462725
88.080726 -35281.462725
111.912560 -35253.623359


Overall Time for 1 Inference 111.929339
Likelihood   : -35253.623359


Parsimony starting tree written to:    /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2627_54x1915_2006.phy_RAXML
Final tree written to:                 /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2627_54x1915_2006.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2627_54x1915_2006.phy_RAXML
Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2627_54x1915_2006.phy_RAXML