IMPORTANT WARNING: Alignment column 810 contains only undetermined values which will be treated as missing data

IMPORTANT WARNING
Found 1 column that contains only undetermined values which will be treated as missing data.
Normally these columns should be excluded from the analysis.

Just in case you might need it, an alignment file with 
undetermined columns removed is printed to file /auto/dufayard/res/ori_nucl_raxml/nucleic_M2655_50x872_2006.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 374 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.040619

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.252566 pi(C): 0.208877 pi(G): 0.305041 pi(T): 0.233516



0.498761 -6589.969880
1.344699 -6576.446353
3.507941 -6540.366791
6.412954 -6529.362930
10.638626 -6527.911810
14.672720 -6527.586322
19.082496 -6527.495219
23.143637 -6527.409539
26.722367 -6527.326824
28.486668 -6527.326824
32.001192 -6508.780121


Overall Time for 1 Inference 32.017207
Likelihood   : -6508.780121


Parsimony starting tree written to:    /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2655_50x872_2006.phy_RAXML
Final tree written to:                 /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2655_50x872_2006.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2655_50x872_2006.phy_RAXML
Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2655_50x872_2006.phy_RAXML