IMPORTANT WARNING: Sequences tax21 and tax22 are exactly identical


IMPORTANT WARNING: Sequences tax41 and tax43 are exactly identical


IMPORTANT WARNING: Sequences tax41 and tax44 are exactly identical


IMPORTANT WARNING: Sequences tax41 and tax45 are exactly identical

IMPORTANT WARNING
Found 4 sequences that are exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates removed is printed to file /auto/dufayard/res/ori_nucl_raxml/nucleic_M2675_51x1537_2006.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 607 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.114994

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.196604 pi(C): 0.328211 pi(G): 0.237355 pi(T): 0.237830



1.399989 -7917.246336
3.222862 -7915.344501
6.966362 -7890.258837
11.492433 -7880.232382
16.403005 -7878.058073
22.008507 -7877.413274
28.231101 -7877.206017
33.399017 -7877.111652
34.322301 -7877.111652
41.511160 -7856.196328


Overall Time for 1 Inference 41.526281
Likelihood   : -7856.196328


Parsimony starting tree written to:    /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2675_51x1537_2006.phy_RAXML
Final tree written to:                 /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2675_51x1537_2006.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2675_51x1537_2006.phy_RAXML
Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2675_51x1537_2006.phy_RAXML