IMPORTANT WARNING: Alignment column 634 contains only undetermined values which will be treated as missing data

IMPORTANT WARNING
Found 1 column that contains only undetermined values which will be treated as missing data.
Normally these columns should be excluded from the analysis.

Just in case you might need it, an alignment file with 
undetermined columns removed is printed to file /auto/dufayard/res/ori_nucl_raxml/nucleic_M2696_50x1472_2006.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 617 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.082092

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.258067 pi(C): 0.196106 pi(G): 0.202961 pi(T): 0.342866



0.637022 -6207.101607
1.951359 -6207.101603
5.075113 -6191.082422
8.039600 -6182.726078
12.358511 -6178.999330
16.531367 -6177.815555
20.841120 -6177.455871
23.844558 -6177.245257
24.813722 -6177.245257
29.612821 -6165.733361


Overall Time for 1 Inference 29.627789
Likelihood   : -6165.733361


Parsimony starting tree written to:    /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2696_50x1472_2006.phy_RAXML
Final tree written to:                 /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2696_50x1472_2006.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2696_50x1472_2006.phy_RAXML
Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2696_50x1472_2006.phy_RAXML