IMPORTANT WARNING: Sequences tax47 and tax48 are exactly identical


IMPORTANT WARNING: Sequences tax47 and tax49 are exactly identical


IMPORTANT WARNING: Sequences tax56 and tax57 are exactly identical


IMPORTANT WARNING: Sequences tax63 and tax68 are exactly identical


IMPORTANT WARNING: Sequences tax63 and tax70 are exactly identical


IMPORTANT WARNING: Sequences tax64 and tax65 are exactly identical


IMPORTANT WARNING: Sequences tax64 and tax69 are exactly identical

IMPORTANT WARNING
Found 7 sequences that are exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates removed is printed to file /auto/dufayard/res/ori_nucl_raxml/nucleic_M2707_115x1677_2006.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 759 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.463416

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.254612 pi(C): 0.219608 pi(G): 0.309431 pi(T): 0.216349



6.867268 -9824.044506
10.856487 -9804.323752
22.670639 -9796.053250
44.295871 -9761.094009
53.094484 -9757.374329
79.706617 -9753.031074
108.508573 -9736.138838
129.098978 -9735.114137
157.344131 -9735.019492
201.190382 -9734.929410
239.871038 -9734.929410
259.325289 -9714.324773


Overall Time for 1 Inference 259.343533
Likelihood   : -9714.324773


Parsimony starting tree written to:    /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2707_115x1677_2006.phy_RAXML
Final tree written to:                 /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2707_115x1677_2006.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2707_115x1677_2006.phy_RAXML
Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2707_115x1677_2006.phy_RAXML