You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008 Alignment has 564 distinct alignment patterns Proportion of gaps and completely undetermined characters in this alignment: 0.067191 RAxML rapid hill-climbing mode Executing 1 inference on the original alignment using a distinct randomized MP tree All free model parameters will be estimated by RAxML GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units Partition: 0 Name: No Name Provided DataType: DNA Substitution Matrix: GTR Empirical Base Frequencies: pi(A): 0.301949 pi(C): 0.155500 pi(G): 0.222893 pi(T): 0.319658 1.191746 -11106.503841 2.580591 -11087.561042 6.383560 -11023.622146 12.225801 -10996.004874 19.655252 -10987.726114 27.069460 -10985.651304 35.986281 -10984.327707 43.176533 -10984.009366 51.115794 -10983.045200 54.573176 -10983.045200 64.074970 -10941.498492 Overall Time for 1 Inference 64.091073 Likelihood : -10941.498492 Parsimony starting tree written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2733_60x1207_2006.phy_RAXML Final tree written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2733_60x1207_2006.phy_RAXML Execution Log File written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2733_60x1207_2006.phy_RAXML Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2733_60x1207_2006.phy_RAXML