IMPORTANT WARNING: Alignment column 135 contains only undetermined values which will be treated as missing data


IMPORTANT WARNING: Sequences tax14 and tax15 are exactly identical


IMPORTANT WARNING: Sequences tax14 and tax85 are exactly identical


IMPORTANT WARNING: Sequences tax21 and tax26 are exactly identical


IMPORTANT WARNING: Sequences tax22 and tax54 are exactly identical


IMPORTANT WARNING: Sequences tax35 and tax36 are exactly identical


IMPORTANT WARNING: Sequences tax57 and tax105 are exactly identical


IMPORTANT WARNING: Sequences tax57 and tax112 are exactly identical


IMPORTANT WARNING: Sequences tax59 and tax60 are exactly identical


IMPORTANT WARNING: Sequences tax73 and tax74 are exactly identical


IMPORTANT WARNING: Sequences tax77 and tax151 are exactly identical


IMPORTANT WARNING: Sequences tax91 and tax148 are exactly identical


IMPORTANT WARNING: Sequences tax123 and tax124 are exactly identical


IMPORTANT WARNING: Sequences tax147 and tax150 are exactly identical

IMPORTANT WARNING
Found 13 sequences that are exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.


IMPORTANT WARNING
Found 1 column that contains only undetermined values which will be treated as missing data.
Normally these columns should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates and undetermined columns removed is printed to file /auto/dufayard/res/ori_nucl_raxml/nucleic_M2792_166x812_2006.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 616 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.182236

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.231180 pi(C): 0.294963 pi(G): 0.279020 pi(T): 0.194837



4.367977 -10635.980310
9.421330 -10621.839444
29.761223 -10590.161715
46.374795 -10573.713390
63.275300 -10569.270082
70.888562 -10568.942553
90.759466 -10568.846208
118.488438 -10568.754100
168.394751 -10568.667551
201.647122 -10568.667551
221.891244 -10553.394103


Overall Time for 1 Inference 221.985572
Likelihood   : -10553.394103


Parsimony starting tree written to:    /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2792_166x812_2006.phy_RAXML
Final tree written to:                 /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2792_166x812_2006.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2792_166x812_2006.phy_RAXML
Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2792_166x812_2006.phy_RAXML