IMPORTANT WARNING: Sequences tax22 and tax31 are exactly identical


IMPORTANT WARNING: Sequences tax62 and tax63 are exactly identical

IMPORTANT WARNING
Found 2 sequences that are exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates removed is printed to file /auto/dufayard/res/ori_nucl_raxml/nucleic_M2879_70x800_2006.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 466 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.176321

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.214768 pi(C): 0.287235 pi(G): 0.327399 pi(T): 0.170598



0.970132 -5837.728054
2.421039 -5827.080492
5.689539 -5821.901858
10.901055 -5807.093041
16.367562 -5798.167986
21.229433 -5796.777242
26.593343 -5796.448757
32.911725 -5796.288197
40.253622 -5794.601674
49.457683 -5794.516472
56.838846 -5794.436694
63.908092 -5794.361824
67.778692 -5794.361824
74.185885 -5781.536678


Overall Time for 1 Inference 74.202226
Likelihood   : -5781.536678


Parsimony starting tree written to:    /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2879_70x800_2006.phy_RAXML
Final tree written to:                 /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2879_70x800_2006.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2879_70x800_2006.phy_RAXML
Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2879_70x800_2006.phy_RAXML