IMPORTANT WARNING: Alignment column 93 contains only undetermined values which will be treated as missing data


IMPORTANT WARNING: Sequences tax12 and tax47 are exactly identical


IMPORTANT WARNING: Sequences tax13 and tax17 are exactly identical


IMPORTANT WARNING: Sequences tax13 and tax18 are exactly identical


IMPORTANT WARNING: Sequences tax13 and tax19 are exactly identical


IMPORTANT WARNING: Sequences tax48 and tax49 are exactly identical

IMPORTANT WARNING
Found 5 sequences that are exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.


IMPORTANT WARNING
Found 1 column that contains only undetermined values which will be treated as missing data.
Normally these columns should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates and undetermined columns removed is printed to file /auto/dufayard/res/ori_nucl_raxml/nucleic_M2902_51x908_2006.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 467 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.247905

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.260825 pi(C): 0.214323 pi(G): 0.304425 pi(T): 0.220428



0.757258 -7683.254570
1.702854 -7653.220853
4.058756 -7616.209782
7.998989 -7593.709512
12.864438 -7591.389953
16.769691 -7590.890999
21.628497 -7590.636466
26.094191 -7590.387396
29.979411 -7590.299647
32.370511 -7590.299647
37.141681 -7567.758785


Overall Time for 1 Inference 37.157236
Likelihood   : -7567.758785


Parsimony starting tree written to:    /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2902_51x908_2006.phy_RAXML
Final tree written to:                 /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2902_51x908_2006.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2902_51x908_2006.phy_RAXML
Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2902_51x908_2006.phy_RAXML