IMPORTANT WARNING: Sequences tax7 and tax8 are exactly identical IMPORTANT WARNING: Sequences tax49 and tax50 are exactly identical IMPORTANT WARNING: Sequences tax49 and tax53 are exactly identical IMPORTANT WARNING: Sequences tax49 and tax54 are exactly identical IMPORTANT WARNING: Sequences tax49 and tax55 are exactly identical IMPORTANT WARNING: Sequences tax49 and tax56 are exactly identical IMPORTANT WARNING: Sequences tax51 and tax52 are exactly identical IMPORTANT WARNING: Sequences tax51 and tax64 are exactly identical IMPORTANT WARNING: Sequences tax57 and tax58 are exactly identical IMPORTANT WARNING: Sequences tax57 and tax60 are exactly identical IMPORTANT WARNING: Sequences tax57 and tax61 are exactly identical IMPORTANT WARNING: Sequences tax57 and tax62 are exactly identical IMPORTANT WARNING: Sequences tax68 and tax69 are exactly identical IMPORTANT WARNING Found 13 sequences that are exactly identical to other sequences in the alignment. Normally they should be excluded from the analysis. Just in case you might need it, an alignment file with sequence duplicates removed is printed to file /auto/dufayard/res/ori_nucl_raxml/nucleic_M2922_77x1101_2006.phy.reduced You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008 Alignment has 173 distinct alignment patterns Proportion of gaps and completely undetermined characters in this alignment: 0.028888 RAxML rapid hill-climbing mode Executing 1 inference on the original alignment using a distinct randomized MP tree All free model parameters will be estimated by RAxML GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units Partition: 0 Name: No Name Provided DataType: DNA Substitution Matrix: GTR Empirical Base Frequencies: pi(A): 0.390166 pi(C): 0.318390 pi(G): 0.082378 pi(T): 0.209066 0.491596 -3062.431512 1.130600 -3053.820590 2.542591 -3044.360681 4.866760 -3041.823165 5.657077 -3041.735238 8.451388 -3040.984521 10.496778 -3040.920539 12.453043 -3040.862086 14.625498 -3040.808353 16.534271 -3040.808353 20.783308 -3030.951925 Overall Time for 1 Inference 20.799524 Likelihood : -3030.951925 Parsimony starting tree written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2922_77x1101_2006.phy_RAXML Final tree written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2922_77x1101_2006.phy_RAXML Execution Log File written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2922_77x1101_2006.phy_RAXML Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2922_77x1101_2006.phy_RAXML