IMPORTANT WARNING: Sequences tax3 and tax16 are exactly identical


IMPORTANT WARNING: Sequences tax34 and tax43 are exactly identical


IMPORTANT WARNING: Sequences tax34 and tax46 are exactly identical


IMPORTANT WARNING: Sequences tax34 and tax49 are exactly identical


IMPORTANT WARNING: Sequences tax34 and tax51 are exactly identical


IMPORTANT WARNING: Sequences tax34 and tax52 are exactly identical


IMPORTANT WARNING: Sequences tax41 and tax45 are exactly identical


IMPORTANT WARNING: Sequences tax54 and tax55 are exactly identical


IMPORTANT WARNING: Sequences tax58 and tax59 are exactly identical


IMPORTANT WARNING: Sequences tax58 and tax76 are exactly identical

IMPORTANT WARNING
Found 10 sequences that are exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates removed is printed to file /auto/dufayard/res/ori_nucl_raxml/nucleic_M2928_81x1651_2006.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 507 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.028385

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.309570 pi(C): 0.261271 pi(G): 0.152666 pi(T): 0.276493



1.099696 -6794.127608
2.976420 -6793.688809
8.276706 -6769.046034
14.543753 -6754.189561
18.736893 -6750.999133
25.974031 -6748.285772
31.260195 -6748.190093
36.628480 -6748.098171
43.634377 -6747.603939
48.123135 -6747.603939
68.039543 -6692.093649


Overall Time for 1 Inference 68.056080
Likelihood   : -6692.093649


Parsimony starting tree written to:    /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2928_81x1651_2006.phy_RAXML
Final tree written to:                 /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2928_81x1651_2006.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2928_81x1651_2006.phy_RAXML
Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2928_81x1651_2006.phy_RAXML