You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008 Alignment has 725 distinct alignment patterns Proportion of gaps and completely undetermined characters in this alignment: 0.296597 RAxML rapid hill-climbing mode Executing 1 inference on the original alignment using a distinct randomized MP tree All free model parameters will be estimated by RAxML GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units Partition: 0 Name: No Name Provided DataType: DNA Substitution Matrix: GTR Empirical Base Frequencies: pi(A): 0.239893 pi(C): 0.250626 pi(G): 0.238236 pi(T): 0.271245 2.467936 -12480.602140 5.443453 -12460.728389 13.647420 -12456.166254 28.905083 -12375.786183 41.143885 -12338.341000 56.890052 -12334.589740 71.833772 -12332.767881 86.590418 -12332.227497 102.295073 -12332.126956 117.528961 -12332.030700 136.017356 -12331.937939 151.649520 -12331.937939 172.056040 -12285.585217 Overall Time for 1 Inference 172.072871 Likelihood : -12285.585217 Parsimony starting tree written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_parsimonyTree.nucleic_M2975_93x982_2006.phy_RAXML Final tree written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_result.nucleic_M2975_93x982_2006.phy_RAXML Execution Log File written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_log.nucleic_M2975_93x982_2006.phy_RAXML Execution information file written to: /auto/dufayard/res/ori_nucl_raxml/./RAxML_info.nucleic_M2975_93x982_2006.phy_RAXML