IMPORTANT WARNING: Sequences tax1 and tax2 are exactly identical


IMPORTANT WARNING: Sequences tax3 and tax4 are exactly identical


IMPORTANT WARNING: Sequences tax3 and tax5 are exactly identical


IMPORTANT WARNING: Sequences tax3 and tax6 are exactly identical


IMPORTANT WARNING: Sequences tax3 and tax7 are exactly identical


IMPORTANT WARNING: Sequences tax3 and tax8 are exactly identical


IMPORTANT WARNING: Sequences tax3 and tax9 are exactly identical


IMPORTANT WARNING: Sequences tax3 and tax10 are exactly identical


IMPORTANT WARNING: Sequences tax3 and tax11 are exactly identical


IMPORTANT WARNING: Sequences tax23 and tax24 are exactly identical


IMPORTANT WARNING: Sequences tax25 and tax26 are exactly identical

IMPORTANT WARNING
Found 11 sequences that are exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates removed is printed to file /auto/dufayard/res/ori_prot_raxml/proteic_M1768_31x228_2004.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 60 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.000000

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: AA
Substitution Matrix: WAG
Fixed Base Frequencies:
pi(A): 0.087000 pi(R): 0.044000 pi(N): 0.039000 pi(D): 0.057000 
pi(C): 0.019000 pi(Q): 0.037000 pi(E): 0.058000 pi(G): 0.083000 
pi(H): 0.024000 pi(I): 0.049000 pi(L): 0.086000 pi(K): 0.062000 
pi(M): 0.020000 pi(F): 0.038000 pi(P): 0.046000 pi(S): 0.070000 
pi(T): 0.061000 pi(W): 0.014000 pi(Y): 0.035000 pi(V): 0.071000 



0.926385 -1080.057902
3.977600 -1056.790856
9.171007 -1056.740995
18.629823 -1056.736582
25.598939 -1056.732405
32.283901 -1056.730446
39.278820 -1052.183393
49.064112 -1052.173416
55.249387 -1052.173416
61.943332 -1052.173416
65.635996 -1052.173416
66.970184 -1052.173416


Overall Time for 1 Inference 66.984988
Likelihood   : -1052.173416


Parsimony starting tree written to:    /auto/dufayard/res/ori_prot_raxml/./RAxML_parsimonyTree.proteic_M1768_31x228_2004.phy_RAXML
Final tree written to:                 /auto/dufayard/res/ori_prot_raxml/./RAxML_result.proteic_M1768_31x228_2004.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/ori_prot_raxml/./RAxML_log.proteic_M1768_31x228_2004.phy_RAXML
Execution information file written to: /auto/dufayard/res/ori_prot_raxml/./RAxML_info.proteic_M1768_31x228_2004.phy_RAXML
65.96user 0.00system 1:07.00elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps