IMPORTANT WARNING: Alignment column 347 contains only undetermined values which will be treated as missing data
IMPORTANT WARNING: Alignment column 348 contains only undetermined values which will be treated as missing data
IMPORTANT WARNING: Alignment column 349 contains only undetermined values which will be treated as missing data
IMPORTANT WARNING: Alignment column 350 contains only undetermined values which will be treated as missing data
IMPORTANT WARNING: Alignment column 351 contains only undetermined values which will be treated as missing data
IMPORTANT WARNING: Alignment column 352 contains only undetermined values which will be treated as missing data
IMPORTANT WARNING: Alignment column 353 contains only undetermined values which will be treated as missing data
IMPORTANT WARNING: Alignment column 354 contains only undetermined values which will be treated as missing data
IMPORTANT WARNING: Alignment column 355 contains only undetermined values which will be treated as missing data
IMPORTANT WARNING: Alignment column 356 contains only undetermined values which will be treated as missing data
IMPORTANT WARNING: Alignment column 357 contains only undetermined values which will be treated as missing data
IMPORTANT WARNING: Alignment column 358 contains only undetermined values which will be treated as missing data
IMPORTANT WARNING: Alignment column 359 contains only undetermined values which will be treated as missing data
IMPORTANT WARNING: Alignment column 360 contains only undetermined values which will be treated as missing data
IMPORTANT WARNING: Alignment column 361 contains only undetermined values which will be treated as missing data
IMPORTANT WARNING: Alignment column 362 contains only undetermined values which will be treated as missing data
IMPORTANT WARNING: Alignment column 363 contains only undetermined values which will be treated as missing data
IMPORTANT WARNING: Alignment column 364 contains only undetermined values which will be treated as missing data
IMPORTANT WARNING: Alignment column 365 contains only undetermined values which will be treated as missing data

IMPORTANT WARNING
Found 19 columns that contain only undetermined values which will be treated as missing data.
Normally these columns should be excluded from the analysis.

Just in case you might need it, an alignment file with 
undetermined columns removed is printed to file /auto/dufayard/res/ori_prot_raxml/proteic_M2302_24x365_2005.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 261 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.058676

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: AA
Substitution Matrix: WAG
Fixed Base Frequencies:
pi(A): 0.087000 pi(R): 0.044000 pi(N): 0.039000 pi(D): 0.057000 
pi(C): 0.019000 pi(Q): 0.037000 pi(E): 0.058000 pi(G): 0.083000 
pi(H): 0.024000 pi(I): 0.049000 pi(L): 0.086000 pi(K): 0.062000 
pi(M): 0.020000 pi(F): 0.038000 pi(P): 0.046000 pi(S): 0.070000 
pi(T): 0.061000 pi(W): 0.014000 pi(Y): 0.035000 pi(V): 0.071000 



3.416286 -4204.725712
11.817754 -4204.144998
26.980901 -4204.002397
52.430503 -4204.002397
82.656591 -4203.994082
108.524418 -4203.994082
137.503666 -4203.987547
137.916581 -4203.987547
142.379292 -4203.980498


Overall Time for 1 Inference 142.395321
Likelihood   : -4203.980498


Parsimony starting tree written to:    /auto/dufayard/res/ori_prot_raxml/./RAxML_parsimonyTree.proteic_M2302_24x365_2005.phy_RAXML
Final tree written to:                 /auto/dufayard/res/ori_prot_raxml/./RAxML_result.proteic_M2302_24x365_2005.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/ori_prot_raxml/./RAxML_log.proteic_M2302_24x365_2005.phy_RAXML
Execution information file written to: /auto/dufayard/res/ori_prot_raxml/./RAxML_info.proteic_M2302_24x365_2005.phy_RAXML
141.50user 0.00system 2:22.41elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps