IMPORTANT WARNING: Sequences tax26 and tax70 are exactly identical


IMPORTANT WARNING: Sequences tax106 and tax108 are exactly identical

IMPORTANT WARNING
Found 2 sequences that are exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates removed is printed to file /auto/dufayard/res/ori_prot_raxml/proteic_M2624_139x348_2006.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 347 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.260088

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: AA
Substitution Matrix: WAG
Fixed Base Frequencies:
pi(A): 0.087000 pi(R): 0.044000 pi(N): 0.039000 pi(D): 0.057000 
pi(C): 0.019000 pi(Q): 0.037000 pi(E): 0.058000 pi(G): 0.083000 
pi(H): 0.024000 pi(I): 0.049000 pi(L): 0.086000 pi(K): 0.062000 
pi(M): 0.020000 pi(F): 0.038000 pi(P): 0.046000 pi(S): 0.070000 
pi(T): 0.061000 pi(W): 0.014000 pi(Y): 0.035000 pi(V): 0.071000 



136.773287 -12952.940587
249.034624 -12873.927154
522.729243 -12872.875910
992.588301 -12872.376441
1682.841524 -12859.546679
2085.315924 -12846.555486
2528.217886 -12845.359331
2953.964796 -12844.899458
3297.311662 -12843.109164
3586.293103 -12843.109162
4151.071333 -12841.838924
4710.583831 -12840.534915
5102.724996 -12840.534915
5618.578417 -12840.534915
6326.929218 -12840.534915
7219.552490 -12840.534915
7286.646155 -12840.490769


Overall Time for 1 Inference 7286.672984
Likelihood   : -12840.490769


Parsimony starting tree written to:    /auto/dufayard/res/ori_prot_raxml/./RAxML_parsimonyTree.proteic_M2624_139x348_2006.phy_RAXML
Final tree written to:                 /auto/dufayard/res/ori_prot_raxml/./RAxML_result.proteic_M2624_139x348_2006.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/ori_prot_raxml/./RAxML_log.proteic_M2624_139x348_2006.phy_RAXML
Execution information file written to: /auto/dufayard/res/ori_prot_raxml/./RAxML_info.proteic_M2624_139x348_2006.phy_RAXML
7249.04user 0.00system 2:01:26elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps