Sequence filename : /auto/dufayard/res/simu_2.4.5/data10.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 7400008 . Log(lk) : * -> -4485.032613 . Log(lk) : -4485.032613 -> -4474.844004 2 swaps done . Log(lk) : -4474.844004 -> -4473.898737 0 swap done . Log(lk) : -4473.898737 -> -4473.742617 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4461.406342 -> -4461.356236 0 swap done . Log(lk) : -4461.356236 -> -4461.348389 0 swap done . Log(lk) : -4461.348389 -> -4461.346782 0 swap done . Log(lk) : -4461.346782 -> -4461.346433 0 swap done . Last optimization step... . Log(lk) : * -> -4461.346326 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4461.346326 -> -4461.309202 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4461.309202 -> -4461.309131 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4461.309131 -> -4461.309131 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -4461.309131 . Time used 0h0m10s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 8.49user 0.00system 0:10.05elapsed 84%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps