Sequence filename : /auto/dufayard/res/simu_2.4.5/data100.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 11365200 . Log(lk) : * -> -10653.473833 . Log(lk) : -10653.473833 -> -10578.570310 3 swaps done . Log(lk) : -10578.570310 -> -10561.836464 3 swaps done . Log(lk) : -10561.836464 -> -10555.114792 2 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10507.661423 -> -10502.351919 2 swaps done . Log(lk) : -10502.351919 -> -10500.899106 0 swap done . Log(lk) : -10500.899106 -> -10500.181892 0 swap done . Log(lk) : -10500.181892 -> -10499.794156 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10499.564641 -> -10499.313179 0 swap done . Log(lk) : -10499.313179 -> -10499.175019 0 swap done . Log(lk) : -10499.175019 -> -10499.096267 0 swap done . Last optimization step... . Log(lk) : * -> -10499.026624 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10499.026624 -> -10498.988727 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10498.988727 -> -10498.979306 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10498.979306 -> -10498.976581 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10498.976581 -> -10498.975843 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10498.975843 -> -10498.975637 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10498.975637 -> -10498.975585 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10498.975585 -> -10498.975571 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10498.975571 -> -10498.975567 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -10498.975567 -> -10498.975566 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -10498.975566 . Time used 0h0m22s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 20.04user 0.00system 0:21.96elapsed 91%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps